RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RBX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022400

Ensembl transcript IDs: ENSMUST00000023036.7, ENSMUST00000230062.2, ENSMUST00000230219.2

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTGGCTGGTCCAAGGCTGCCATGTTCTTCCTCATTCCTGCCTGGTaGTATCTCAGAAGGAAGACAGAGCTGGAGGGGTTTCCAGGTGCC +
Preference number: 1 (lower is better)
Translates to: PGWSKAAMFFLIPAW*YLRRKTELEGFPGA
Trigger: GGCACCTGGAAACCCCTCCAGCTCTGTCTTCCTTCTGAGATAGCACCAGGCAGGAATGAGGAAGAACATGGCAGCCTTGGACCAGCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
3UTR CCA 90 bp TCTTCCTCATTCCTGCCTGGTGCTATCTCAGAAGGAAGACAGAGCTaGAGGGGTTTCCAGGTGCCAGTTACCCGCACTCCCGACTCTGAC +
Preference number: 1 (lower is better)
Translates to: SSSFLPGAISEGRQS*RGFQVPVTRTPDSD
Trigger: GTCAGAGTCGGGAGTGCGGGTAACTGGCACCTGGAAACCCCTCCAGCTCTGTCTTCCTTCTGAGATAGCACCAGGCAGGAATGAGGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
3UTR GCA 90 bp TGCCTCTGGCTCCCAAGTGTTGGGATTAAAGGCATGCACCACCACTaGCTGGCCCTGGCCAGCATGTTTAAAGAAAACTTAAGCTCTTGC +
Preference number: 1 (lower is better)
Translates to: CLWLPSVGIKGMHHH*LALASMFKENLSSC
Trigger: GCAAGAGCTTAAGTTTTCTTTAAACATGCTGGCCAGGGCCAGGCAGTGGTGGTGCATGCCTTTAATCCCAACACTTGGGAGCCAGAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
3UTR CCA 90 bp GTTCTTAGACTCCATCATGAGATGAAAACTCAGAGCAGACCTGGCTaGTCCAAGGCTGCCATGTTCTTCCTCATTCCTGCCTGGTGCTAT +
Preference number: 1 (lower is better)
Translates to: VLRLHHEMKTQSRPG*SKAAMFFLIPAWCY
Trigger: ATAGCACCAGGCAGGAATGAGGAAGAACATGGCAGCCTTGGACCAGCCAGGTCTGCTCTGAGTTTTCATCTCATGATGGAGTCTAAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
3UTR CCA 90 bp CTCCTTAAGAACAGAGCACTTCTTGAGGCTGCCTTTCTGGCTTTCTaGCTCCTTCTCAGATCACTCTCCACATACATGAAACAGCAACCA +
Preference number: 1 (lower is better)
Translates to: LLKNRALLEAAFLAF*LLLRSLSTYMKQQP
Trigger: TGGTTGCTGTTTCATGTATGTGGAGAGTGATCTGAGAAGGAGCCAGAAAGCCAGAAAGGCAGCCTCAAGAAGTGCTCTGTTCTTAAGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023036.7
ENSMUST00000230062.2
3UTR GCA 90 bp GTCACTGCTAACCCTGTAGTGTTTAGAGTTTACAAAGCCTTCCTGTaGCCACTTGATGCCAGTCACTCGTTCTTAGACTCCATCATGAGA +
Preference number: 1 (lower is better)
Translates to: VTANPVVFRVYKAFL*PLDASHSFLDSIMR
Trigger: TCTCATGATGGAGTCTAAGAACGAGTGACTGGCATCAAGTGGGCACAGGAAGGCTTTGTAAACTCTAAACACTACAGGGTTAGCAGTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
3UTR-3UTR GCA 90 bp GTAGTGTTTAGAGTTTACAAAGCCTTCCTGTGCCCACTTGATGCCAGTCACTCGGGAGGGGTTTCCAGGTaGCAGTTACCCGCACTCCCG +
Preference number: 2 (lower is better)
Translates to: VVFRVYKAFLCPLDASHSGGVSR*QLPALP
Trigger: CGGGAGTGCGGGTAACTGGCACCTGGAAACCCCTCC...CGAGTGACTGGCATCAAGTGGGCACAGGAAGGCTTTGTAAACTCTAAACACTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
3UTR-3UTR TCA 90 bp CATGAGATGAAAACTCAGAGCAGACCTGGCTGGTCCAAGGCTGCCATGTTCTTCGAACAGAGCACTTCTTaGGGCTGCCTTTCTGGCTTT +
Preference number: 2 (lower is better)
Translates to: HEMKTQSRPGWSKAAMFFEQSTS*GCLSGF
Trigger: AAAGCCAGAAAGGCAGCCTCAAGAAGTGCTCTGTTC...GAAGAACATGGCAGCCTTGGACCAGCCAGGTCTGCTCTGAGTTTTCATCTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
3UTR-3UTR CCA 90 bp TCAACTTTTGTTCTAGAGATTGCTGCATGTCATTCACAGTCACTGCTAACCCTGCAGAGCAGACCTGGCTaGTCCAAGGCTGCCATGTTC +
Preference number: 2 (lower is better)
Translates to: STFVLEIAACHSQSLLTLQSRPG*SKAAMF
Trigger: GAACATGGCAGCCTTGGACCAGCCAGGTCTGCTCTG...CAGGGTTAGCAGTGACTGTGAATGACATGCAGCAATCTCTAGAACAAAAGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
3UTR-3UTR CCA 90 bp TGTGTTCTCCTTAAGAACAGAGCACTTCTTGAGGCTGCCTTTCTGGCTTTCTGGACACAAAATACAATATaGCTGCGGGAACACCAAACT +
Preference number: 2 (lower is better)
Translates to: CVLLKNRALLEAAFLAFWTQNTI*LREHQT
Trigger: AGTTTGGTGTTCCCGCAGCCATATTGTATTTTGTGT...CCAGAAAGCCAGAAAGGCAGCCTCAAGAAGTGCTCTGTTCTTAAGGAGAACACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023036.7
ENSMUST00000230062.2
3UTR CCA 72 bp TTCCTGCCTGGTGCTATCTCAGAAGGAAGACAGAGCTaGAGGGGTTTCCAGGTGCCAGTTACCCGCACTCCC +
Preference number: 3 (lower is better)
Translates to: FLPGAISEGRQS*RGFQVPVTRTP
Trigger: GGGAGTGCGGGTAACTGGCACCTGGAAACCCCTCCAGCTCTGTCTTCCTTCTGAGATAGCACCAGGCAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
3UTR CCA 72 bp CTCCATCATGAGATGAAAACTCAGAGCAGACCTGGCTaGTCCAAGGCTGCCATGTTCTTCCTCATTCCTGCC +
Preference number: 3 (lower is better)
Translates to: LHHEMKTQSRPG*SKAAMFFLIPA
Trigger: GGCAGGAATGAGGAAGAACATGGCAGCCTTGGACCAGCCAGGTCTGCTCTGAGTTTTCATCTCATGATGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
3UTR TCA 72 bp GATGCCAGTCACTCGTTCTTAGACTCCATCATGAGATaGAAACTCAGAGCAGACCTGGCTGGTCCAAGGCTG +
Preference number: 3 (lower is better)
Translates to: DASHSFLDSIMR*KLRADLAGPRL
Trigger: CAGCCTTGGACCAGCCAGGTCTGCTCTGAGTTTTCATCTCATGATGGAGTCTAAGAACGAGTGACTGGCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
3UTR CCA 72 bp TCCTTAAGAACAGAGCACTTCTTGAGGCTGCCTTTCTaGCTTTCTGGCTCCTTCTCAGATCACTCTCCACAT +
Preference number: 3 (lower is better)
Translates to: SLRTEHFLRLPF*LSGSFSDHSPH
Trigger: ATGTGGAGAGTGATCTGAGAAGGAGCCAGAAAGCCAGAAAGGCAGCCTCAAGAAGTGCTCTGTTCTTAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023036.7
ENSMUST00000230062.2
3UTR TCA 72 bp AGAAGGCACAGATACTCTCAAGACTGTTTTAGGCTTTaGAGACAACCCCTGAGGGTGGCTGAATACTGCACA +
Preference number: 3 (lower is better)
Translates to: RRHRYSQDCFRL*RQPLRVAEYCT
Trigger: TGTGCAGTATTCAGCCACCCTCAGGGGTTGTCTTCAAAGCCTAAAACAGTCTTGAGAGTATCTGTGCCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230219.2
3UTR GCA 72 bp AACCCTGTAGTGTTTAGAGTTTACAAAGCCTTCCTGTaGCCACTTGATGCCAGTCACTCGTTCTTAGACTCC +
Preference number: 3 (lower is better)
Translates to: NPVVFRVYKAFL*PLDASHSFLDS
Trigger: GGAGTCTAAGAACGAGTGACTGGCATCAAGTGGGCACAGGAAGGCTTTGTAAACTCTAAACACTACAGGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
CDS-3UTR CCA 90 bp TGGGCCAAGTGTGTTCTCCTTAAGAACAGAGCACTTCTTGAGGCTGCCTTTCTGTGCCCGCGCCGCTGTTaGTGCCGCTGGGGGTATCCA +
Preference number: 4 (lower is better)
Translates to: WAKCVLLKNRALLEAAFLCPRRC*CRWGYP
Trigger: TGGATACCCCCAGCGGCACCAACAGCGGCGCGGGCA...CAGAAAGGCAGCCTCAAGAAGTGCTCTGTTCTTAAGGAGAACACACTTGGCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
CDS-3UTR CCA 90 bp AGGGGGCAGCTCGTCGTTTCCCCTAATAATTCTCAAGATGGCAAAGCAGCAATGTGCCCGCGCCGCTGTTaGTGCCGCTGGGGGTATCCA +
Preference number: 4 (lower is better)
Translates to: RGQLVVSPNNSQDGKAAMCPRRC*CRWGYP
Trigger: TGGATACCCCCAGCGGCACCAACAGCGGCGCGGGCA...CATTGCTGCTTTGCCATCTTGAGAATTATTAGGGGAAACGACGAGCTGCCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000230219.2
CDS-3UTR GCA 90 bp GCTTTCTGGCTCCTTCTCAGATCACTCTCCACATACATGAAACAGCAACCACCTCTTCAAAGCGCTTCTTaGCCGCGCCGCTGTTGGTGC +
Preference number: 4 (lower is better)
Translates to: AFWLLLRSLSTYMKQQPPLQSAS*PRRCWC
Trigger: GCACCAACAGCGGCGCGGGCAAGAAGCGCTTTGAAG...AGGTGGTTGCTGTTTCATGTATGTGGAGAGTGATCTGAGAAGGAGCCAGAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
CDS-3UTR GCA 90 bp GAAAACTCAGAGCAGACCTGGCTGGTCCAAGGCTGCCATGTTCTTCCTCATTCCGTTGCAGACTCCCCATaGAACCGTACACTCTTCGGA +
Preference number: 4 (lower is better)
Translates to: ENSEQTWLVQGCHVLPHSVADSP*NRTLFG
Trigger: TCCGAAGAGTGTACGGTTGCATGGGGAGTCTGCAAC...GGAATGAGGAAGAACATGGCAGCCTTGGACCAGCCAGGTCTGCTCTGAGTTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
CDS-3UTR GCA 90 bp CTCGTCGTTTCCCCTAATAATTCTCAAGATGGCAAAGCAGCAATGCATGCAGAGCTTCAAAGCGCTTCTTaGCCGCGCCGCTGTTGGTGC +
Preference number: 4 (lower is better)
Translates to: LVVSPNNSQDGKAAMHAELQSAS*PRRCWC
Trigger: GCACCAACAGCGGCGCGGGCAAGAAGCGCTTTGAAG...CTCTGCATGCATTGCTGCTTTGCCATCTTGAGAATTATTAGGGGAAACGACGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230219.2
CDS-3UTR GCA 90 bp GGATGTGAATCTGCTTTACTGTCTGTAACCTCTGGGGAGAAAGGGGGCAGCTCGGGCCCAGAGGGCCACTaGATTCCACTTTTTAACTTC +
Preference number: 4 (lower is better)
Translates to: GCESALLSVTSGEKGGSSGPEGH*IPLFNF
Trigger: GAAGTTAAAAAGTGGAATGCAGTGGCCCTCTGGGCC...CGAGCTGCCCCCTTTCTCCCCAGAGGTTACAGACAGTAAAGCAGATTCACATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000230219.2
CDS-3UTR GCA 90 bp AGGGGGCAGCTCGTCGTTTCCCCTAATAATTCTCAAGATGGCAAAGCAGCAATGGATGGTTCCTTACGTTaGAGACTCCCCATGCAACCG +
Preference number: 4 (lower is better)
Translates to: RGQLVVSPNNSQDGKAAMDGSLR*RLPMQP
Trigger: CGGTTGCATGGGGAGTCTGCAACGTAAGGAACCATC...CATTGCTGCTTTGCCATCTTGAGAATTATTAGGGGAAACGACGAGCTGCCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000230219.2
CDS-3UTR TCA 90 bp GCTTTCTGGCTCCTTCTCAGATCACTCTCCACATACATGAAACAGCAACCACCTACACCTGCCTCGTTTTaGGCCATCGAGAGATGCAGT +
Preference number: 4 (lower is better)
Translates to: AFWLLLRSLSTYMKQQPPTPASF*AIERCS
Trigger: ACTGCATCTCTCGATGGCTCAAAACGAGGCAGGTGT...AGGTGGTTGCTGTTTCATGTATGTGGAGAGTGATCTGAGAAGGAGCCAGAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023036.7
ENSMUST00000230062.2
CDS-3UTR GCA 90 bp CATGAGATGAAAACTCAGAGCAGACCTGGCTGGTCCAAGGCTGCCATGTTCTTCAATGAAAAGCATGGTTaGAGACTCCCCATGCAACCG +
Preference number: 4 (lower is better)
Translates to: HEMKTQSRPGWSKAAMFFNEKHG*RLPMQP
Trigger: CGGTTGCATGGGGAGTCTGCAACCATGCTTTTCATT...GAAGAACATGGCAGCCTTGGACCAGCCAGGTCTGCTCTGAGTTTTCATCTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
CDS-3UTR TCA 90 bp GGGCCAAGTGTGTTCTCCTTAAGAACAGAGCACTTCTTGAGGCTGCCTTTCTGGGAGATGCAGTGGAAATaGAAAGCATGGTTGCAGACT +
Preference number: 4 (lower is better)
Translates to: GPSVFSLRTEHFLRLPFWEMQWK*KAWLQT
Trigger: AGTCTGCAACCATGCTTTTCATTTCCACTGCATCTC...CCAGAAAGGCAGCCTCAAGAAGTGCTCTGTTCTTAAGGAGAACACACTTGGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023036.7
ENSMUST00000230062.2
CDS-3UTR TCA 90 bp CTTTCTGGCTTTCTGGCTCCTTCTCAGATCACTCTCCACATACATGAAACAGCAACACCTGCCTCGTTTTaGGCCATCGAGAGATGCAGT +
Preference number: 4 (lower is better)
Translates to: LSGFLAPSQITLHIHETATPASF*AIERCS
Trigger: ACTGCATCTCTCGATGGCTCAAAACGAGGCAGGTGT...TGCTGTTTCATGTATGTGGAGAGTGATCTGAGAAGGAGCCAGAAAGCCAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023036.7
ENSMUST00000230062.2
CDS-3UTR GCA 90 bp GCTTTCTGGCTCCTTCTCAGATCACTCTCCACATACATGAAACAGCAACCACCTGGCCCAGAGGGCCACTaGATTCCACTTTTTAACTTC +
Preference number: 4 (lower is better)
Translates to: AFWLLLRSLSTYMKQQPPGPEGH*IPLFNF
Trigger: GAAGTTAAAAAGTGGAATGCAGTGGCCCTCTGGGCC...AGGTGGTTGCTGTTTCATGTATGTGGAGAGTGATCTGAGAAGGAGCCAGAAAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
CDS-3UTR TCA 90 bp TGGGCCAAGTGTGTTCTCCTTAAGAACAGAGCACTTCTTGAGGCTGCCTTTCTGGAGATGCAGTGGAAATaGAAAGCATGGTTGCAGACT +
Preference number: 4 (lower is better)
Translates to: WAKCVLLKNRALLEAAFLEMQWK*KAWLQT
Trigger: AGTCTGCAACCATGCTTTTCATTTCCACTGCATCTC...CAGAAAGGCAGCCTCAAGAAGTGCTCTGTTCTTAAGGAGAACACACTTGGCCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023036.7
ENSMUST00000230062.2
CDS-3UTR GCA 90 bp GCTTTCTGGCTCCTTCTCAGATCACTCTCCACATACATGAAACAGCAACCACCTAATGAAAAGCATGGTTaGAGACTCCCCATGCAACCG +
Preference number: 4 (lower is better)
Translates to: AFWLLLRSLSTYMKQQPPNEKHG*RLPMQP
Trigger: CGGTTGCATGGGGAGTCTGCAACCATGCTTTTCATT...AGGTGGTTGCTGTTTCATGTATGTGGAGAGTGATCTGAGAAGGAGCCAGAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023036.7
ENSMUST00000230062.2
CDS-3UTR CAA 90 bp GCCAAGTGTGTTCTCCTTAAGAACAGAGCACTTCTTGAGGCTGCCTTTCTGGCTTTGCCCGCGCCGCTGTaGGTGCCGCTGGGGGTATCC +
Preference number: 5 (lower is better)
Translates to: AKCVLLKNRALLEAAFLALPAPL*VPLGVS
Trigger: GGATACCCCCAGCGGCACCAACAGCGGCGCGGGCAA...AGCCAGAAAGGCAGCCTCAAGAAGTGCTCTGTTCTTAAGGAGAACACACTTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
CDS-3UTR CAA 90 bp CTCGTCGTTTCCCCTAATAATTCTCAAGATGGCAAAGCAGCAATGCATGCAGAGTTGCCCGCGCCGCTGTaGGTGCCGCTGGGGGTATCC +
Preference number: 5 (lower is better)
Translates to: LVVSPNNSQDGKAAMHAELPAPL*VPLGVS
Trigger: GGATACCCCCAGCGGCACCAACAGCGGCGCGGGCAA...CTCTGCATGCATTGCTGCTTTGCCATCTTGAGAATTATTAGGGGAAACGACGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230219.2
CDS-3UTR CAA 90 bp GTAGTGTTTAGAGTTTACAAAGCCTTCCTGTGCCCACTTGATGCCAGTCACTCGACTTCAAAGCGCTTCTaGCCCGCGCCGCTGTTGGTG +
Preference number: 5 (lower is better)
Translates to: VVFRVYKAFLCPLDASHSTSKRF*PAPLLV
Trigger: CACCAACAGCGGCGCGGGCAAGAAGCGCTTTGAAGT...CGAGTGACTGGCATCAAGTGGGCACAGGAAGGCTTTGTAAACTCTAAACACTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
CDS-3UTR CAA 90 bp AAAACTCAGAGCAGACCTGGCTGGTCCAAGGCTGCCATGTTCTTCCTCATTCCTAACTCCCACTCTCTGTaGTCCAACGGACACACCTGC +
Preference number: 5 (lower is better)
Translates to: KTQSRPGWSKAAMFFLIPNSHSL*SNGHTC
Trigger: GCAGGTGTGTCCGTTGGACAACAGAGAGTGGGAGTT...AGGAATGAGGAAGAACATGGCAGCCTTGGACCAGCCAGGTCTGCTCTGAGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023036.7
CDS-3UTR CAA 90 bp GTCGTTTCCCCTAATAATTCTCAAGATGGCAAAGCAGCAATGCATGCAGAGCCAACTTCAAAGCGCTTCTaGCCCGCGCCGCTGTTGGTG +
Preference number: 5 (lower is better)
Translates to: VVSPNNSQDGKAAMHAEPTSKRF*PAPLLV
Trigger: CACCAACAGCGGCGCGGGCAAGAAGCGCTTTGAAGT...TGGCTCTGCATGCATTGCTGCTTTGCCATCTTGAGAATTATTAGGGGAAACGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230219.2
CDS-3UTR CAA 90 bp TGTGTTCTCCTTAAGAACAGAGCACTTCTTGAGGCTGCCTTTCTGGCTTTCTGGCACACCTGCCTCGTTTaGAGCCATCGAGAGATGCAG +
Preference number: 5 (lower is better)
Translates to: CVLLKNRALLEAAFLAFWHTCLV*SHREMQ
Trigger: CTGCATCTCTCGATGGCTCAAAACGAGGCAGGTGTG...CCAGAAAGCCAGAAAGGCAGCCTCAAGAAGTGCTCTGTTCTTAAGGAGAACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023036.7
ENSMUST00000230062.2
CDS-3UTR CAA 90 bp CTTTCTGGCTTTCTGGCTCCTTCTCAGATCACTCTCCACATACATGAAACAGCAAACTCCCACTCTCTGTaGTCCAACGGACACACCTGC +
Preference number: 5 (lower is better)
Translates to: LSGFLAPSQITLHIHETANSHSL*SNGHTC
Trigger: GCAGGTGTGTCCGTTGGACAACAGAGAGTGGGAGTT...TGCTGTTTCATGTATGTGGAGAGTGATCTGAGAAGGAGCCAGAAAGCCAGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023036.7
ENSMUST00000230062.2
CDS TCA 72 bp GACTCCCCATGCAACCGTACACTCTTCGGAAGTAGCTaGCGCCTGGTTGGCCTGACATTCGATACAAAGATC +
Preference number: 6 (lower is better)
Translates to: DSPCNRTLFGSS*RLVGLTFDTKI
Trigger: GATCTTTGTATCGAATGTCAGGCCAACCAGGCGTCAGCTACTTCCGAAGAGTGTACGGTTGCATGGGGAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023036.7
ENSMUST00000230062.2
ENSMUST00000230219.2