Pregenerated sensors for RBPMS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032387Ensembl transcript IDs: ENSMUST00000055844.10, ENSMUST00000169003.8, ENSMUST00000216342.2, ENSMUST00000216382.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATGACCACAGGCTCAGGGACCCCTGAAGCAGGGTGGGTGCAGGAGTaGAAAGAAGCAGTAGGCTGGACCAGCCTCCAGTGCCAAGACCTG | + |
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Preference number: 1 (lower is better) Translates to: MTTGSGTPEAGWVQE*KEAVGWTSLQCQDL Trigger: CAGGTCTTGGCACTGGAGGCTGGTCCAGCCTACTGCTTCTTTCCACTCCTGCACCCACCCTGCTTCAGGGGTCCCTGAGCCTGTGGTCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR CCA 90 bp | CCCAAGGCAGAAATGACCACAGGCTCAGGGACCCCTGAAGCAGGGTaGGTGCAGGAGTGGAAAGAAGCAGTAGGCTGGACCAGCCTCCAG | + |
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Preference number: 1 (lower is better) Translates to: PKAEMTTGSGTPEAG*VQEWKEAVGWTSLQ Trigger: CTGGAGGCTGGTCCAGCCTACTGCTTCTTTCCACTCCTGCACCCACCCTGCTTCAGGGGTCCCTGAGCCTGTGGTCATTTCTGCCTTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR GCA 90 bp | TGGTTTCGAAGTTCAGGAAGAATGAGGTGCAGTGGCAGGGTGGGGTaGACTGGGGAAGGCAAGCGCAAGGCAGGCTTCTCAGACCTGTCA | + |
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Preference number: 1 (lower is better) Translates to: WFRSSGRMRCSGRVG*TGEGKRKAGFSDLS Trigger: TGACAGGTCTGAGAAGCCTGCCTTGCGCTTGCCTTCCCCAGTGCACCCCACCCTGCCACTGCACCTCATTCTTCCTGAACTTCGAAACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR TCA 90 bp | ACAGATACAAGTCTGAGCAGGAGGACAGGCTGCGCTGGGTCCCAGTaGGGCCTGCAAACTGGACCTAGGTATCCAAGGCCTCAGATCCTT | + |
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Preference number: 1 (lower is better) Translates to: TDTSLSRRTGCAGSQ*GLQTGPRYPRPQIL Trigger: AAGGATCTGAGGCCTTGGATACCTAGGTCCAGTTTGCAGGCCTCACTGGGACCCAGCGCAGCCTGTCCTCCTGCTCAGACTTGTATCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR TCA 90 bp | GAGGCCTGCAAACTGGACCTAGGTATCCAAGGCCTCAGATCCTTCTaGAGGCCTTGGAGAACTGAGGAAGAAAACAAGAGCCATCCACTG | + |
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Preference number: 1 (lower is better) Translates to: EACKLDLGIQGLRSF*RPWRTEEENKSHPL Trigger: CAGTGGATGGCTCTTGTTTTCTTCCTCAGTTCTCCAAGGCCTTCAGAAGGATCTGAGGCCTTGGATACCTAGGTCCAGTTTGCAGGCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR CCA 90 bp | CTGGACCAGCCTCCAGTGCCAAGACCTGTTGCTACGGCGACAGTTTaGGAACAAACCATACACACATTTGCACAAGTGTCACAATTCATA | + |
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Preference number: 1 (lower is better) Translates to: LDQPPVPRPVATATV*EQTIHTFAQVSQFI Trigger: TATGAATTGTGACACTTGTGCAAATGTGTGTATGGTTTGTTCCCAAACTGTCGCCGTAGCAACAGGTCTTGGCACTGGAGGCTGGTCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CCA 90 bp | GCGTGCGCGTGTGCTCCCAAGTTAGGAGCTGGGACCCCCAAGGCAGAAATGACCGAGGACAGGCTGCGCTaGGTCCCAGTGAGGCCTGCA | + |
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Preference number: 2 (lower is better) Translates to: ACACAPKLGAGTPKAEMTEDRLR*VPVRPA Trigger: TGCAGGCCTCACTGGGACCCAGCGCAGCCTGTCCTC...GGTCATTTCTGCCTTGGGGGTCCCAGCTCCTAACTTGGGAGCACACGCGCACGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR TCA 90 bp | CACTGGGGAAGGCAAGCGCAAGGCAGGCTTCTCAGACCTGTCAGCCTGGAGAAGCCCCCAAGGCAGAAATaGCCACAGGCTCAGGGACCC | + |
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Preference number: 2 (lower is better) Translates to: HWGRQAQGRLLRPVSLEKPPRQK*PQAQGP Trigger: GGGTCCCTGAGCCTGTGGTCATTTCTGCCTTGGGGG...CTTCTCCAGGCTGACAGGTCTGAGAAGCCTGCCTTGCGCTTGCCTTCCCCAGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CCA 90 bp | ACAGGCTCAGGGACCCCTGAAGCAGGGTGGGTGCAGGAGTGGAAAGAAGCAGTAGAGGACAGGCTGCGCTaGGTCCCAGTGAGGCCTGCA | + |
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Preference number: 2 (lower is better) Translates to: TGSGTPEAGWVQEWKEAVEDRLR*VPVRPA Trigger: TGCAGGCCTCACTGGGACCCAGCGCAGCCTGTCCTC...TACTGCTTCTTTCCACTCCTGCACCCACCCTGCTTCAGGGGTCCCTGAGCCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR TCA 90 bp | GCGTGCGCGTGTGCTCCCAAGTTAGGAGCTGGGACCCCCAAGGCAGAAATGACCGGCCTCAGATCCTTCTaGAGGCCTTGGAGAACTGAG | + |
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Preference number: 2 (lower is better) Translates to: ACACAPKLGAGTPKAEMTGLRSF*RPWRTE Trigger: CTCAGTTCTCCAAGGCCTTCAGAAGGATCTGAGGCC...GGTCATTTCTGCCTTGGGGGTCCCAGCTCCTAACTTGGGAGCACACGCGCACGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CCA 90 bp | CACTGGGGAAGGCAAGCGCAAGGCAGGCTTCTCAGACCTGTCAGCCTGGAGAAGGGGTGGGTGCAGGAGTaGAAAGAAGCAGTAGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: HWGRQAQGRLLRPVSLEKGWVQE*KEAVGW Trigger: CCAGCCTACTGCTTCTTTCCACTCCTGCACCCACCC...CTTCTCCAGGCTGACAGGTCTGAGAAGCCTGCCTTGCGCTTGCCTTCCCCAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR TCA 90 bp | CACTGGGGAAGGCAAGCGCAAGGCAGGCTTCTCAGACCTGTCAGCCTGGAGAAGGGCCTCAGATCCTTCTaGAGGCCTTGGAGAACTGAG | + |
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Preference number: 2 (lower is better) Translates to: HWGRQAQGRLLRPVSLEKGLRSF*RPWRTE Trigger: CTCAGTTCTCCAAGGCCTTCAGAAGGATCTGAGGCC...CTTCTCCAGGCTGACAGGTCTGAGAAGCCTGCCTTGCGCTTGCCTTCCCCAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR TCA 90 bp | ATGTGCGTGCGCGTGTGCTCCCAAGTTAGGAGCTGGGACCCCCAAGGCAGAAATCTACAGATACAAGTCTaGGCAGGAGGACAGGCTGCG | + |
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Preference number: 2 (lower is better) Translates to: MCVRVCSQVRSWDPQGRNLQIQV*AGGQAA Trigger: CGCAGCCTGTCCTCCTGCTCAGACTTGTATCTGTAG...ATTTCTGCCTTGGGGGTCCCAGCTCCTAACTTGGGAGCACACGCGCACGCACAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CCA 90 bp | TGGTTTCGAAGTTCAGGAAGAATGAGGTGCAGTGGCAGGGTGGGGTGCACTGGGTCAGACCTGTCAGCCTaGAGAAGGAGACGATGCAGG | + |
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Preference number: 2 (lower is better) Translates to: WFRSSGRMRCSGRVGCTGSDLSA*RRRRCR Trigger: CCTGCATCGTCTCCTTCTCCAGGCTGACAGGTCTGA...CCCAGTGCACCCCACCCTGCCACTGCACCTCATTCTTCCTGAACTTCGAAACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CCA 90 bp | CACTGGGGAAGGCAAGCGCAAGGCAGGCTTCTCAGACCTGTCAGCCTGGAGAAGGGCTCTGATCTGAAGTaGAATTCAGAGGCTGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: HWGRQAQGRLLRPVSLEKGSDLK*NSEAVD Trigger: ATCCACAGCCTCTGAATTCCACTTCAGATCAGAGCC...CTTCTCCAGGCTGACAGGTCTGAGAAGCCTGCCTTGCGCTTGCCTTCCCCAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR TCA 90 bp | GCTACGGCGACAGTTTGGGAACAAACCATACACACATTTGCACAAGTGTCACAAGGCCTCGGGTGGCAGTaGGGGCAGAGCCCTGTTTTG | + |
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Preference number: 2 (lower is better) Translates to: ATATVWEQTIHTFAQVSQGLGWQ*GQSPVL Trigger: CAAAACAGGGCTCTGCCCTCACTGCCACCCGAGGCC...TTGTGACACTTGTGCAAATGTGTGTATGGTTTGTTCCCAAACTGTCGCCGTAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR GCA 90 bp | CCTGTCAGCCTGGAGAAGGAGACGATGCAGGGCTCTGATCTGAAGTGGAATTCAGGTCCCAGTGAGGCCTaGAAACTGGACCTAGGTATC | + |
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Preference number: 2 (lower is better) Translates to: PVSLEKETMQGSDLKWNSGPSEA*KLDLGI Trigger: GATACCTAGGTCCAGTTTGCAGGCCTCACTGGGACC...TGAATTCCACTTCAGATCAGAGCCCTGCATCGTCTCCTTCTCCAGGCTGACAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CCA 90 bp | CCTGTCAGCCTGGAGAAGGAGACGATGCAGGGCTCTGATCTGAAGTGGAATTCAAAAGAAGCAGTAGGCTaGACCAGCCTCCAGTGCCAA | + |
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Preference number: 2 (lower is better) Translates to: PVSLEKETMQGSDLKWNSKEAVG*TSLQCQ Trigger: TTGGCACTGGAGGCTGGTCCAGCCTACTGCTTCTTT...TGAATTCCACTTCAGATCAGAGCCCTGCATCGTCTCCTTCTCCAGGCTGACAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CCA 90 bp | CCTGTCAGCCTGGAGAAGGAGACGATGCAGGGCTCTGATCTGAAGTGGAATTCATCCCAAGTTAGGAGCTaGGACCCCCAAGGCAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: PVSLEKETMQGSDLKWNSSQVRS*DPQGRN Trigger: ATTTCTGCCTTGGGGGTCCCAGCTCCTAACTTGGGA...TGAATTCCACTTCAGATCAGAGCCCTGCATCGTCTCCTTCTCCAGGCTGACAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CCA 90 bp | AAGGCAAGCGCAAGGCAGGCTTCTCAGACCTGTCAGCCTGGAGAAGGAGACGATCTGTGGATCTGCTGTTaGATGAGAACAGAGTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: KASARQASQTCQPGEGDDLWICC*MRTESV Trigger: CACAGACTCTGTTCTCATCCAACAGCAGATCCACAG...ATCGTCTCCTTCTCCAGGCTGACAGGTCTGAGAAGCCTGCCTTGCGCTTGCCTT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CCA 90 bp | AAAGCCCGACACAAAGGCCAACTGCTAAAGAACGGAAACCCCTTTTCTTCTTCAGGCAGAGCCCTGTTTTaGCCCCACACAACCCAGGAC | + |
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Preference number: 2 (lower is better) Translates to: KARHKGQLLKNGNPFSSSGRALF*PHTTQD Trigger: GTCCTGGGTTGTGTGGGGCCAAAACAGGGCTCTGCC...TGAAGAAGAAAAGGGGTTTCCGTTCTTTAGCAGTTGGCCTTTGTGTCGGGCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR TCA 90 bp | TCATTCTTCTTAAACCAAAGCCCGACACAAAGGCCAACTGCTAAAGAACGGAAAGAAGTTCAGGAAGAATaGGGTGCAGTGGCAGGGTGG | + |
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Preference number: 2 (lower is better) Translates to: SFFLNQSPTQRPTAKERKEVQEE*GAVAGW Trigger: CCACCCTGCCACTGCACCTCATTCTTCCTGAACTTC...TTTCCGTTCTTTAGCAGTTGGCCTTTGTGTCGGGCTTTGGTTTAAGAAGAATGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CCA 90 bp | AAAGCCCGACACAAAGGCCAACTGCTAAAGAACGGAAACCCCTTTTCTTCTTCAATACTTTTCACGTTTTaGTTGGTTTCGAAGTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: KARHKGQLLKNGNPFSSSILFTF*LVSKFR Trigger: CCTGAACTTCGAAACCAACCAAAACGTGAAAAGTAT...TGAAGAAGAAAAGGGGTTTCCGTTCTTTAGCAGTTGGCCTTTGTGTCGGGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CCA 90 bp | TCATTCTTCTTAAACCAAAGCCCGACACAAAGGCCAACTGCTAAAGAACGGAAATTTTCACGTTTTGGTTaGTTTCGAAGTTCAGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: SFFLNQSPTQRPTAKERKFSRFG*FRSSGR Trigger: TCTTCCTGAACTTCGAAACCAACCAAAACGTGAAAA...TTTCCGTTCTTTAGCAGTTGGCCTTTGTGTCGGGCTTTGGTTTAAGAAGAATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR CCA 72 bp | CAGGCCTCGGGTGGCAGTGAGGGCAGAGCCCTGTTTTaGCCCCACACAACCCAGGACCAACTCCAGGGTGAC | + |
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Preference number: 3 (lower is better) Translates to: QASGGSEGRALF*PHTTQDQLQGD Trigger: GTCACCCTGGAGTTGGTCCTGGGTTGTGTGGGGCCAAAACAGGGCTCTGCCCTCACTGCCACCCGAGGCCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR CCA 72 bp | GGCTCAGGGACCCCTGAAGCAGGGTGGGTGCAGGAGTaGAAAGAAGCAGTAGGCTGGACCAGCCTCCAGTGC | + |
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Preference number: 3 (lower is better) Translates to: GSGTPEAGWVQE*KEAVGWTSLQC Trigger: GCACTGGAGGCTGGTCCAGCCTACTGCTTCTTTCCACTCCTGCACCCACCCTGCTTCAGGGGTCCCTGAGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CAA 90 bp | AAGGCAAGCGCAAGGCAGGCTTCTCAGACCTGTCAGCCTGGAGAAGGAGACGATGGGCAGAGCCCTGTTTaGGCCCCACACAACCCAGGA | + |
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Preference number: 3 (lower is better) Translates to: KASARQASQTCQPGEGDDGQSPV*APHNPG Trigger: TCCTGGGTTGTGTGGGGCCAAAACAGGGCTCTGCCC...ATCGTCTCCTTCTCCAGGCTGACAGGTCTGAGAAGCCTGCCTTGCGCTTGCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR GCA 72 bp | AGTTCAGGAAGAATGAGGTGCAGTGGCAGGGTGGGGTaGACTGGGGAAGGCAAGCGCAAGGCAGGCTTCTCA | + |
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Preference number: 3 (lower is better) Translates to: SSGRMRCSGRVG*TGEGKRKAGFS Trigger: TGAGAAGCCTGCCTTGCGCTTGCCTTCCCCAGTGCACCCCACCCTGCCACTGCACCTCATTCTTCCTGAACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR CCA 72 bp | TGTATGTGCGTGCGCGTGTGCTCCCAAGTTAGGAGCTaGGACCCCCAAGGCAGAAATGACCACAGGCTCAGG | + |
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Preference number: 3 (lower is better) Translates to: CMCVRVCSQVRS*DPQGRNDHRLR Trigger: CCTGAGCCTGTGGTCATTTCTGCCTTGGGGGTCCCAGCTCCTAACTTGGGAGCACACGCGCACGCACATACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGCCCGACACAAAGGCCAACTGCTAAAGAACGGAAACCCCTTTTCTTCTTCAGGGCAGAGCCCTGTTTaGGCCCCACACAACCCAGGA | + |
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Preference number: 3 (lower is better) Translates to: KARHKGQLLKNGNPFSSSGQSPV*APHNPG Trigger: TCCTGGGTTGTGTGGGGCCAAAACAGGGCTCTGCCC...TGAAGAAGAAAAGGGGTTTCCGTTCTTTAGCAGTTGGCCTTTGTGTCGGGCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CAA 90 bp | CACTGGGGAAGGCAAGCGCAAGGCAGGCTTCTCAGACCTGTCAGCCTGGAGAAGAAACCATACACACATTaGCACAAGTGTCACAATTCA | + |
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Preference number: 3 (lower is better) Translates to: HWGRQAQGRLLRPVSLEKKPYTH*HKCHNS Trigger: TGAATTGTGACACTTGTGCAAATGTGTGTATGGTTT...CTTCTCCAGGCTGACAGGTCTGAGAAGCCTGCCTTGCGCTTGCCTTCCCCAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR CCA 72 bp | CCTCCAGTGCCAAGACCTGTTGCTACGGCGACAGTTTaGGAACAAACCATACACACATTTGCACAAGTGTCA | + |
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Preference number: 3 (lower is better) Translates to: PPVPRPVATATV*EQTIHTFAQVS Trigger: TGACACTTGTGCAAATGTGTGTATGGTTTGTTCCCAAACTGTCGCCGTAGCAACAGGTCTTGGCACTGGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CAA 90 bp | TGGTTTCGAAGTTCAGGAAGAATGAGGTGCAGTGGCAGGGTGGGGTGCACTGGGAAACCATACACACATTaGCACAAGTGTCACAATTCA | + |
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Preference number: 3 (lower is better) Translates to: WFRSSGRMRCSGRVGCTGKPYTH*HKCHNS Trigger: TGAATTGTGACACTTGTGCAAATGTGTGTATGGTTT...CCCAGTGCACCCCACCCTGCCACTGCACCTCATTCTTCCTGAACTTCGAAACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGCCCGACACAAAGGCCAACTGCTAAAGAACGGAAACCCCTTTTCTTCTTCAAATACTTTTCACGTTTaGGTTGGTTTCGAAGTTCAG | + |
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Preference number: 3 (lower is better) Translates to: KARHKGQLLKNGNPFSSSNTFHV*VGFEVQ Trigger: CTGAACTTCGAAACCAACCAAAACGTGAAAAGTATT...TGAAGAAGAAAAGGGGTTTCCGTTCTTTAGCAGTTGGCCTTTGTGTCGGGCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR TCA 90 bp | GGTGGCAGTGAGGGCAGAGCCCTGTTTTGGCCCCACACAACCCAGGACCAACTCCCACAGGGAGGCCACTaGCAAACAGTGTGCGGACCT | + |
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Preference number: 4 (lower is better) Translates to: GGSEGRALFWPHTTQDQLPQGGH*QTVCGP Trigger: AGGTCCGCACACTGTTTGTCAGTGGCCTCCCTGTGG...GAGTTGGTCCTGGGTTGTGTGGGGCCAAAACAGGGCTCTGCCCTCACTGCCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR CCA 90 bp | CCTGTCAGCCTGGAGAAGGAGACGATGCAGGGCTCTGATCTGAAGTGGAATTCACCTGAGCATGTAGGGTaGCGGCGGCAGCAGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: PVSLEKETMQGSDLKWNSPEHVG*RRQQQQ Trigger: CTGCTGCTGCTGCCGCCGCCACCCTACATGCTCAGG...TGAATTCCACTTCAGATCAGAGCCCTGCATCGTCTCCTTCTCCAGGCTGACAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR TCA 90 bp | ATGTGCGTGCGCGTGTGCTCCCAAGTTAGGAGCTGGGACCCCCAAGGCAGAAATGGTGAACGTGGTATGTaGAATGGCTGGGGTCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: MCVRVCSQVRSWDPQGRNGERGM*NGWGQL Trigger: GAGCTGACCCCAGCCATTTCACATACCACGTTCACC...ATTTCTGCCTTGGGGGTCCCAGCTCCTAACTTGGGAGCACACGCGCACGCACAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055844.10 |
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| CDS-3UTR CCA 90 bp | ACAGGCTCAGGGACCCCTGAAGCAGGGTGGGTGCAGGAGTGGAAAGAAGCAGTAGCTCCTAGAGCAGGGTaGACACTGGTGGGATTTGGT | + |
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Preference number: 4 (lower is better) Translates to: TGSGTPEAGWVQEWKEAVAPRAG*TLVGFG Trigger: ACCAAATCCCACCAGTGTCCACCCTGCTCTAGGAGC...TACTGCTTCTTTCCACTCCTGCACCCACCCTGCTTCAGGGGTCCCTGAGCCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR CCA 90 bp | AGGGTGGGTGCAGGAGTGGAAAGAAGCAGTAGGCTGGACCAGCCTCCAGTGCCAACGTGGTATGTGAAATaGCTGGGGTCAGCTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: RVGAGVERSSRLDQPPVPTWYVK*LGSALW Trigger: CCACAGAGCTGACCCCAGCCATTTCACATACCACGT...TGGCACTGGAGGCTGGTCCAGCCTACTGCTTCTTTCCACTCCTGCACCCACCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055844.10 |
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| CDS-3UTR TCA 90 bp | GCCTCCAGTGCCAAGACCTGTTGCTACGGCGACAGTTTGGGAACAAACCATACACCACAGGGAGGCCACTaGCAAACAGTGTGCGGACCT | + |
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Preference number: 4 (lower is better) Translates to: ASSAKTCCYGDSLGTNHTPQGGH*QTVCGP Trigger: AGGTCCGCACACTGTTTGTCAGTGGCCTCCCTGTGG...TGTATGGTTTGTTCCCAAACTGTCGCCGTAGCAACAGGTCTTGGCACTGGAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR TCA 90 bp | ATGTGCGTGCGCGTGTGCTCCCAAGTTAGGAGCTGGGACCCCCAAGGCAGAAATACCAACAGGCTGTCTTaGGGTGAGCTTGATCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: MCVRVCSQVRSWDPQGRNTNRLS*GELDQG Trigger: TCCCTGATCAAGCTCACCTCAAGACAGCCTGTTGGT...ATTTCTGCCTTGGGGGTCCCAGCTCCTAACTTGGGAGCACACGCGCACGCACAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR CCA 90 bp | AGGGTGGGTGCAGGAGTGGAAAGAAGCAGTAGGCTGGACCAGCCTCCAGTGCCACAGGGTGGACACTGGTaGGATTTGGTGTCGCTATTA | + |
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Preference number: 4 (lower is better) Translates to: RVGAGVERSSRLDQPPVPQGGHW*DLVSLL Trigger: TAATAGCGACACCAAATCCCACCAGTGTCCACCCTG...TGGCACTGGAGGCTGGTCCAGCCTACTGCTTCTTTCCACTCCTGCACCCACCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR TCA 90 bp | GGACCAGCCTCCAGTGCCAAGACCTGTTGCTACGGCGACAGTTTGGGAACAAACACCAACAGGCTGTCTTaGGGTGAGCTTGATCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: GPASSAKTCCYGDSLGTNTNRLS*GELDQG Trigger: TCCCTGATCAAGCTCACCTCAAGACAGCCTGTTGGT...GTTTGTTCCCAAACTGTCGCCGTAGCAACAGGTCTTGGCACTGGAGGCTGGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR CCA 90 bp | GTGCCAAGACCTGTTGCTACGGCGACAGTTTGGGAACAAACCATACACACATTTCCTGAGCATGTAGGGTaGCGGCGGCAGCAGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: VPRPVATATVWEQTIHTFPEHVG*RRQQQQ Trigger: CTGCTGCTGCTGCCGCCGCCACCCTACATGCTCAGG...AAATGTGTGTATGGTTTGTTCCCAAACTGTCGCCGTAGCAACAGGTCTTGGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR CCA 90 bp | AAAGCCCGACACAAAGGCCAACTGCTAAAGAACGGAAACCCCTTTTCTTCTTCACAGCAGCAGCAGCAGTaGCAGAAGGGTCCCGGGCGA | + |
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Preference number: 4 (lower is better) Translates to: KARHKGQLLKNGNPFSSSQQQQQ*QKGPGR Trigger: TCGCCCGGGACCCTTCTGCCACTGCTGCTGCTGCTG...TGAAGAAGAAAAGGGGTTTCCGTTCTTTAGCAGTTGGCCTTTGTGTCGGGCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169003.8 |
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| CDS-3UTR CCA 90 bp | GCCTCCAGTGCCAAGACCTGTTGCTACGGCGACAGTTTGGGAACAAACCATACACAGGGTGGACACTGGTaGGATTTGGTGTCGCTATTA | + |
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Preference number: 4 (lower is better) Translates to: ASSAKTCCYGDSLGTNHTQGGHW*DLVSLL Trigger: TAATAGCGACACCAAATCCCACCAGTGTCCACCCTG...TGTATGGTTTGTTCCCAAACTGTCGCCGTAGCAACAGGTCTTGGCACTGGAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR GCA 90 bp | AATGTCCCTTTTCCTAGATGGGGAGCTACAGATACAAGTCTGAGCAGGAGGACATCTAGCCTCAGGGTCTaGGGGTTCTCCGGATCAAAG | + |
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Preference number: 4 (lower is better) Translates to: NVPFPRWGATDTSLSRRTSSLRV*GFSGSK Trigger: CTTTGATCCGGAGAACCCGCAGACCCTGAGGCTAGA...TGTCCTCCTGCTCAGACTTGTATCTGTAGCTCCCCATCTAGGAAAAGGGACATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR CCA 90 bp | AATGTCCCTTTTCCTAGATGGGGAGCTACAGATACAAGTCTGAGCAGGAGGACAGCTCCTAGAGCAGGGTaGACACTGGTGGGATTTGGT | + |
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Preference number: 4 (lower is better) Translates to: NVPFPRWGATDTSLSRRTAPRAG*TLVGFG Trigger: ACCAAATCCCACCAGTGTCCACCCTGCTCTAGGAGC...TGTCCTCCTGCTCAGACTTGTATCTGTAGCTCCCCATCTAGGAAAAGGGACATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| 3UTR CAA 72 bp | GCCTCCAGTGCCAAGACCTGTTGCTACGGCGACAGTTaGGGAACAAACCATACACACATTTGCACAAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: ASSAKTCCYGDS*GTNHTHICTSV Trigger: GACACTTGTGCAAATGTGTGTATGGTTTGTTCCCAAACTGTCGCCGTAGCAACAGGTCTTGGCACTGGAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR CCA 90 bp | AAAGCCCGACACAAAGGCCAACTGCTAAAGAACGGAAACCCCTTTTCTTCTTCAAGCAGCAGTGGCAGCTaGGTAGGTGAACGTGGTATG | + |
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Preference number: 4 (lower is better) Translates to: KARHKGQLLKNGNPFSSSSSSGS*VGERGM Trigger: CATACCACGTTCACCTACCCAGCTGCCACTGCTGCT...TGAAGAAGAAAAGGGGTTTCCGTTCTTTAGCAGTTGGCCTTTGTGTCGGGCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055844.10 |
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| CDS CCA 90 bp | AGCGCACCTGAGCATGTAGGGTGGCGGCGGCAGCAGCAGCAGCAGTaGCAGAAGGGTCCCGGGCGATCAAGTGTGCTCCTAGAGCAGGGT | + |
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Preference number: 5 (lower is better) Translates to: SAPEHVGWRRQQQQQ*QKGPGRSSVLLEQG Trigger: ACCCTGCTCTAGGAGCACACTTGATCGCCCGGGACCCTTCTGCCACTGCTGCTGCTGCTGCCGCCGCCACCCTACATGCTCAGGTGCGCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169003.8 |
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| CDS-3UTR CAA 90 bp | ACAGGCTCAGGGACCCCTGAAGCAGGGTGGGTGCAGGAGTGGAAAGAAGCAGTAGGACACTGGTGGGATTaGGTGTCGCTATTAGTTTGC | + |
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Preference number: 5 (lower is better) Translates to: TGSGTPEAGWVQEWKEAVGHWWD*VSLLVC Trigger: GCAAACTAATAGCGACACCAAATCCCACCAGTGTCC...TACTGCTTCTTTCCACTCCTGCACCCACCCTGCTTCAGGGGTCCCTGAGCCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS-3UTR CAA 90 bp | TGGTTTCGAAGTTCAGGAAGAATGAGGTGCAGTGGCAGGGTGGGGTGCACTGGGGGACACTGGTGGGATTaGGTGTCGCTATTAGTTTGC | + |
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Preference number: 5 (lower is better) Translates to: WFRSSGRMRCSGRVGCTGGHWWD*VSLLVC Trigger: GCAAACTAATAGCGACACCAAATCCCACCAGTGTCC...CCCAGTGCACCCCACCCTGCCACTGCACCTCATTCTTCCTGAACTTCGAAACCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS CCA 72 bp | GGCGCGCCTCAGGCGAAGCGTAAGCCCCACCGGGCTTaGGGAAGGAGGGCAGCGGGAGTAGGACCTCCGCGG | + |
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Preference number: 6 (lower is better) Translates to: GAPQAKRKPHRA*GRRAAGVGPPR Trigger: CCGCGGAGGTCCTACTCCCGCTGCCCTCCTTCCCCAAGCCCGGTGGGGCTTACGCTTCGCCTGAGGCGCGCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000216342.2 ENSMUST00000216382.2 |
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| CDS GCA 72 bp | ACAGTGTGCGGACCTCCTCCTCCAGCGGGCTGCCGGTaGCCGCGCCCGTGCAGTGCTCGACGTCCGGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: TVCGPPPPAGCR*PRPCSARRPAS Trigger: TGAAGCCGGACGTCGAGCACTGCACGGGCGCGGGCACCGGCAGCCCGCTGGAGGAGGAGGTCCGCACACTGT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055844.10 ENSMUST00000169003.8 |
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| CDS CCA 72 bp | GAGCATGTAGGGTGGCGGCGGCAGCAGCAGCAGCAGTaGCAGAAGGGTCCCGGGCGATCAAGTGTGCTCCTA | + |
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Preference number: 6 (lower is better) Translates to: EHVGWRRQQQQQ*QKGPGRSSVLL Trigger: TAGGAGCACACTTGATCGCCCGGGACCCTTCTGCCACTGCTGCTGCTGCTGCCGCCGCCACCCTACATGCTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169003.8 |
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