Pregenerated sensors for RBP7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028996Ensembl transcript IDs: ENSMUST00000030848.3, ENSMUST00000148596.8
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTTGCACACCTGGCCTTCGCAGAACATTTCTTTGTAGACCAGGCTaGCCTCGAACTCAGGAATCTTCCTGCCTCTGCCTCCCGAGTGCT | + |
|
Preference number: 1 (lower is better) Translates to: ACTPGLRRTFLCRPG*PRTQESSCLCLPSA Trigger: AGCACTCGGGAGGCAGAGGCAGGAAGATTCCTGAGTTCGAGGCCAGCCTGGTCTACAAAGAAATGTTCTGCGAAGGCCAGGTGTGCAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| 3UTR CCA 90 bp | AGTTGCCTCAAGCGGGCTCTGTTGCTGGAGATGTATCAGGCTCTCTaGAAGGTTTGCTTGCACACCTGGCCTTCGCAGAACATTTCTTTG | + |
|
Preference number: 1 (lower is better) Translates to: SCLKRALLLEMYQAL*KVCLHTWPSQNISL Trigger: CAAAGAAATGTTCTGCGAAGGCCAGGTGTGCAAGCAAACCTTCCAGAGAGCCTGATACATCTCCAGCAACAGAGCCCGCTTGAGGCAACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| 3UTR GCA 90 bp | GACAAACACCCGTTCCTTCTACGAGATAACTTGGCATTGAGTAGTTaGCTCAAGCGGGCTCTGTTGCTGGAGATGTATCAGGCTCTCTGG | + |
|
Preference number: 1 (lower is better) Translates to: DKHPFLLRDNLALSS*LKRALLLEMYQALW Trigger: CCAGAGAGCCTGATACATCTCCAGCAACAGAGCCCGCTTGAGGCAACTACTCAATGCCAAGTTATCTCGTAGAAGGAACGGGTGTTTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| 3UTR-3UTR CCA 90 bp | CTGGAGATGTATCAGGCTCTCTGGAAGGTTTGCTTGCACACCTGGCCTTCGCAGCTTTGTAGACCAGGCTaGCCTCGAACTCAGGAATCT | + |
|
Preference number: 2 (lower is better) Translates to: LEMYQALWKVCLHTWPSQLCRPG*PRTQES Trigger: AGATTCCTGAGTTCGAGGCCAGCCTGGTCTACAAAG...CTGCGAAGGCCAGGTGTGCAAGCAAACCTTCCAGAGAGCCTGATACATCTCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| 3UTR CAA 90 bp | CAAGCGGGCTCTGTTGCTGGAGATGTATCAGGCTCTCTGGAAGGTTaGCTTGCACACCTGGCCTTCGCAGAACATTTCTTTGTAGACCAG | + |
|
Preference number: 2 (lower is better) Translates to: QAGSVAGDVSGSLEG*LAHLAFAEHFFVDQ Trigger: CTGGTCTACAAAGAAATGTTCTGCGAAGGCCAGGTGTGCAAGCAAACCTTCCAGAGAGCCTGATACATCTCCAGCAACAGAGCCCGCTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| 3UTR CAA 90 bp | CTACGAGATAACTTGGCATTGAGTAGTTGCCTCAAGCGGGCTCTGTaGCTGGAGATGTATCAGGCTCTCTGGAAGGTTTGCTTGCACACC | + |
|
Preference number: 2 (lower is better) Translates to: LRDNLALSSCLKRAL*LEMYQALWKVCLHT Trigger: GGTGTGCAAGCAAACCTTCCAGAGAGCCTGATACATCTCCAGCAACAGAGCCCGCTTGAGGCAACTACTCAATGCCAAGTTATCTCGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| 3UTR-3UTR GCA 90 bp | CACTTGAGCAGGTTTATTGGAGCTGAAACTGTCCTGAAATCAAACAGTTTCTCAACTCAGGAATCTTCCTaGCTCTGCCTCCCGAGTGCT | + |
|
Preference number: 2 (lower is better) Translates to: HLSRFIGAETVLKSNSFSTQESS*LCLPSA Trigger: AGCACTCGGGAGGCAGAGGCAGGAAGATTCCTGAGT...TGAGAAACTGTTTGATTTCAGGACAGTTTCAGCTCCAATAAACCTGCTCAAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| 3UTR-3UTR CCA 90 bp | CCAATGACAAGACCCTTCATCAACCCAAAACAGACAAACACCCGTTCCTTCTACATGTATCAGGCTCTCTaGAAGGTTTGCTTGCACACC | + |
|
Preference number: 2 (lower is better) Translates to: PMTRPFINPKQTNTRSFYMYQAL*KVCLHT Trigger: GGTGTGCAAGCAAACCTTCCAGAGAGCCTGATACAT...GTAGAAGGAACGGGTGTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| 3UTR-3UTR GCA 90 bp | TTGAGCAGGTTTATTGGAGCTGAAACTGTCCTGAAATCAAACAGTTTCTCATACGCTCTCTGGAAGGTTTaGTTGCACACCTGGCCTTCG | + |
|
Preference number: 2 (lower is better) Translates to: LSRFIGAETVLKSNSFSYALWKV*LHTWPS Trigger: CGAAGGCCAGGTGTGCAAGCAAACCTTCCAGAGAGC...GTATGAGAAACTGTTTGATTTCAGGACAGTTTCAGCTCCAATAAACCTGCTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| 3UTR-3UTR TCA 90 bp | GGAGCTGAAACTGTCCTGAAATCAAACAGTTTCTCATACAGGCTGTGTGACATCGTGACATCTTTCCAATaGCAAGACCCTTCATCAACC | + |
|
Preference number: 2 (lower is better) Translates to: GAETVLKSNSFSYRLCDIVTSFQ*QDPSST Trigger: GGTTGATGAAGGGTCTTGTCATTGGAAAGATGTCAC...GATGTCACACAGCCTGTATGAGAAACTGTTTGATTTCAGGACAGTTTCAGCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030848.3 ENSMUST00000148596.8 |
||
| 3UTR-3UTR TCA 90 bp | AGGCTGTGTGACATCTTTCCAATGACAAGACCCTTCATCAACCCAAAACAGACAGAGCTGAAACTGTCCTaGAATCAAACAGTTTCTCAT | + |
|
Preference number: 2 (lower is better) Translates to: RLCDIFPMTRPFINPKQTELKLS*NQTVSH Trigger: ATGAGAAACTGTTTGATTTCAGGACAGTTTCAGCTC...TGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGGAAAGATGTCACACAGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030848.3 ENSMUST00000148596.8 |
||
| 3UTR CCA 72 bp | CCTGGCCTTCGCAGAACATTTCTTTGTAGACCAGGCTaGCCTCGAACTCAGGAATCTTCCTGCCTCTGCCTC | + |
|
Preference number: 3 (lower is better) Translates to: PGLRRTFLCRPG*PRTQESSCLCL Trigger: GAGGCAGAGGCAGGAAGATTCCTGAGTTCGAGGCCAGCCTGGTCTACAAAGAAATGTTCTGCGAAGGCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| 3UTR CCA 72 bp | AAGCGGGCTCTGTTGCTGGAGATGTATCAGGCTCTCTaGAAGGTTTGCTTGCACACCTGGCCTTCGCAGAAC | + |
|
Preference number: 3 (lower is better) Translates to: KRALLLEMYQAL*KVCLHTWPSQN Trigger: GTTCTGCGAAGGCCAGGTGTGCAAGCAAACCTTCCAGAGAGCCTGATACATCTCCAGCAACAGAGCCCGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| 3UTR GCA 72 bp | CTGTTGCTGGAGATGTATCAGGCTCTCTGGAAGGTTTaGTTGCACACCTGGCCTTCGCAGAACATTTCTTTG | + |
|
Preference number: 3 (lower is better) Translates to: LLLEMYQALWKV*LHTWPSQNISL Trigger: CAAAGAAATGTTCTGCGAAGGCCAGGTGTGCAAGCAAACCTTCCAGAGAGCCTGATACATCTCCAGCAACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| 3UTR-3UTR CAA 90 bp | AGGCTGTGTGACATCTTTCCAATGACAAGACCCTTCATCAACCCAAAACAGACACGAGATAACTTGGCATaGAGTAGTTGCCTCAAGCGG | + |
|
Preference number: 3 (lower is better) Translates to: RLCDIFPMTRPFINPKQTRDNLA*SSCLKR Trigger: CCGCTTGAGGCAACTACTCAATGCCAAGTTATCTCG...TGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGGAAAGATGTCACACAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030848.3 ENSMUST00000148596.8 |
||
| 3UTR-3UTR CAA 90 bp | AGGTTTATTGGAGCTGAAACTGTCCTGAAATCAAACAGTTTCTCATACAGGCTGCGAGATAACTTGGCATaGAGTAGTTGCCTCAAGCGG | + |
|
Preference number: 3 (lower is better) Translates to: RFIGAETVLKSNSFSYRLRDNLA*SSCLKR Trigger: CCGCTTGAGGCAACTACTCAATGCCAAGTTATCTCG...CAGCCTGTATGAGAAACTGTTTGATTTCAGGACAGTTTCAGCTCCAATAAACCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030848.3 ENSMUST00000148596.8 |
||
| 3UTR TCA 72 bp | ACAGTTTCTCATACAGGCTGTGTGACATCTTTCCAATaGCAAGACCCTTCATCAACCCAAAACAGACAAACA | + |
|
Preference number: 3 (lower is better) Translates to: TVSHTGCVTSFQ*QDPSSTQNRQT Trigger: TGTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGGAAAGATGTCACACAGCCTGTATGAGAAACTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030848.3 ENSMUST00000148596.8 |
||
| CDS-3UTR CCA 90 bp | TTTGCTTGCACACCTGGCCTTCGCAGAACATTTCTTTGTAGACCAGGCTGGCCTTCCCCTTCGATCCAGTaGCTCCAGCCTCTGTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: FACTPGLRRTFLCRPGWPSPSIQ*LQPLFF Trigger: GAAAAACAGAGGCTGGAGCCACTGGATCGAAGGGGA...AGGCCAGCCTGGTCTACAAAGAAATGTTCTGCGAAGGCCAGGTGTGCAAGCAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| CDS-3UTR TCA 90 bp | CTTTCCAATGACAAGACCCTTCATCAACCCAAAACAGACAAACACCCGTTCCTTCGAAGTTGTCGCTGCTaGGAAGATTCCAGGTACCGC | + |
|
Preference number: 4 (lower is better) Translates to: LSNDKTLHQPKTDKHPFLRSCRC*EDSRYR Trigger: GCGGTACCTGGAATCTTCTCAGCAGCGACAACTTCG...AAGGAACGGGTGTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS-3UTR GCA 90 bp | CATCTTTCCAATGACAAGACCCTTCATCAACCCAAAACAGACAAACACCCGTTCGCTCTCTGGAAGGTTTaGTTGCACACCTGGCCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: HLSNDKTLHQPKTDKHPFALWKV*LHTWPS Trigger: CGAAGGCCAGGTGTGCAAGCAAACCTTCCAGAGAGC...GAACGGGTGTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGGAAAGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS-3UTR CCA 90 bp | CTTTCCAATGACAAGACCCTTCATCAACCCAAAACAGACAAACACCCGTTCCTTATTTCCAGGTGGAGCTaGTCCCCTTCGATCCAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: LSNDKTLHQPKTDKHPFLISRWS*SPSIQW Trigger: CCACTGGATCGAAGGGGACCAGCTCCACCTGGAAAT...AAGGAACGGGTGTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| 3UTR CAA 72 bp | TCTGTTGCTGGAGATGTATCAGGCTCTCTGGAAGGTTaGCTTGCACACCTGGCCTTCGCAGAACATTTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: SVAGDVSGSLEG*LAHLAFAEHFF Trigger: AAAGAAATGTTCTGCGAAGGCCAGGTGTGCAAGCAAACCTTCCAGAGAGCCTGATACATCTCCAGCAACAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| CDS-3UTR CCA 90 bp | TTTCCAATGACAAGACCCTTCATCAACCCAAAACAGACAAACACCCGTTCCTTCCAGAACATTTCCAGGTaGAGCTGGTCCCCTTCGATC | + |
|
Preference number: 4 (lower is better) Translates to: FPMTRPFINPKQTNTRSFQNISR*SWSPSI Trigger: GATCGAAGGGGACCAGCTCCACCTGGAAATGTTCTG...GAAGGAACGGGTGTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS-3UTR CCA 90 bp | TTTCCAATGACAAGACCCTTCATCAACCCAAAACAGACAAACACCCGTTCCTTCGTTTGCTTGCACACCTaGCCTTCGCAGAACATTTCC | + |
|
Preference number: 4 (lower is better) Translates to: FPMTRPFINPKQTNTRSFVCLHT*PSQNIS Trigger: GGAAATGTTCTGCGAAGGCCAGGTGTGCAAGCAAAC...GAAGGAACGGGTGTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS-3UTR GCA 90 bp | CCAATGACAAGACCCTTCATCAACCCAAAACAGACAAACACCCGTTCCTTCTACAAGGAGTCCCCATTTTaGTCAATCACTTTCTGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: PMTRPFINPKQTNTRSFYKESPF*SITFCG Trigger: GCCACAGAAAGTGATTGAGCAAAATGGGGACTCCTT...GTAGAAGGAACGGGTGTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS-3UTR CCA 90 bp | CACTTGAGCAGGTTTATTGGAGCTGAAACTGTCCTGAAATCAAACAGTTTCTCATCCCCTTCGATCCAGTaGCTCCAGCCTCTGTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: HLSRFIGAETVLKSNSFSSPSIQ*LQPLFF Trigger: GAAAAACAGAGGCTGGAGCCACTGGATCGAAGGGGA...TGAGAAACTGTTTGATTTCAGGACAGTTTCAGCTCCAATAAACCTGCTCAAGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030848.3 ENSMUST00000148596.8 |
||
| CDS-3UTR CCA 90 bp | CCAATGACAAGACCCTTCATCAACCCAAAACAGACAAACACCCGTTCCTTCTACCTCAATCACTTTCTGTaGCTTCAGCAACTTGGCAAT | + |
|
Preference number: 4 (lower is better) Translates to: PMTRPFINPKQTNTRSFYLNHFL*LQQLGN Trigger: ATTGCCAAGTTGCTGAAGCCACAGAAAGTGATTGAG...GTAGAAGGAACGGGTGTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS-3UTR CCA 90 bp | CTGTGTGACATCTTTCCAATGACAAGACCCTTCATCAACCCAAAACAGACAAACGTGGCTTCAGCAACTTaGCAATCTTACGAGTTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: LCDIFPMTRPFINPKQTNVASAT*QSYELQ Trigger: TTGCAACTCGTAAGATTGCCAAGTTGCTGAAGCCAC...GTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGGAAAGATGTCACACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS-3UTR TCA 90 bp | AGGTTTATTGGAGCTGAAACTGTCCTGAAATCAAACAGTTTCTCATACAGGCTGACTCTTCTCCAACTTTaGATTTTACAAGGTAGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: RFIGAETVLKSNSFSYRLTLLQL*ILQGSS Trigger: GGAACTACCTTGTAAAATTCAAAGTTGGAGAAGAGT...CAGCCTGTATGAGAAACTGTTTGATTTCAGGACAGTTTCAGCTCCAATAAACCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS CCA 90 bp | CCTTCGCAGAACATTTCCAGGTGGAGCTGGTCCCCTTCGATCCAGTaGCTCCAGCCTCTGTTTTTCTTCTCTCCTCTCTGTACGCAAGTG | + |
|
Preference number: 5 (lower is better) Translates to: PSQNISRWSWSPSIQ*LQPLFFFSPLCTQV Trigger: CACTTGCGTACAGAGAGGAGAGAAGAAAAACAGAGGCTGGAGCCACTGGATCGAAGGGGACCAGCTCCACCTGGAAATGTTCTGCGAAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS GCA 90 bp | TTCCTGAGGCTGCTGCACGTCTGGATGGTGAAGGAGTCCCCATTTTaGTCAATCACTTTCTGTGGCTTCAGCAACTTGGCAATCTTACGA | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLHVWMVKESPF*SITFCGFSNLAILR Trigger: TCGTAAGATTGCCAAGTTGCTGAAGCCACAGAAAGTGATTGAGCAAAATGGGGACTCCTTCACCATCCAGACGTGCAGCAGCCTCAGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS-3UTR CAA 90 bp | CTTTCCAATGACAAGACCCTTCATCAACCCAAAACAGACAAACACCCGTTCCTTGGCTCTCTGGAAGGTTaGCTTGCACACCTGGCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LSNDKTLHQPKTDKHPFLGSLEG*LAHLAF Trigger: GAAGGCCAGGTGTGCAAGCAAACCTTCCAGAGAGCC...AAGGAACGGGTGTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS-3UTR CAA 90 bp | GCAGAACATTTCTTTGTAGACCAGGCTGGCCTCGAACTCAGGAATCTTCCTGCCCTGTTATCCAGGCCTTaGTTATCCTCCTCAAACTCT | + |
|
Preference number: 5 (lower is better) Translates to: AEHFFVDQAGLELRNLPALLSRP*LSSSNS Trigger: AGAGTTTGAGGAGGATAACAAAGGCCTGGATAACAG...GGCAGGAAGATTCCTGAGTTCGAGGCCAGCCTGGTCTACAAAGAAATGTTCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148596.8 |
||
| CDS-3UTR CAA 90 bp | TTTCCAATGACAAGACCCTTCATCAACCCAAAACAGACAAACACCCGTTCCTTCTGTGGCTTCAGCAACTaGGCAATCTTACGAGTTGCA | + |
|
Preference number: 5 (lower is better) Translates to: FPMTRPFINPKQTNTRSFCGFSN*AILRVA Trigger: TGCAACTCGTAAGATTGCCAAGTTGCTGAAGCCACA...GAAGGAACGGGTGTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS-3UTR CAA 90 bp | CCAATGACAAGACCCTTCATCAACCCAAAACAGACAAACACCCGTTCCTTCTACCTGTTATCCAGGCCTTaGTTATCCTCCTCAAACTCT | + |
|
Preference number: 5 (lower is better) Translates to: PMTRPFINPKQTNTRSFYLLSRP*LSSSNS Trigger: AGAGTTTGAGGAGGATAACAAAGGCCTGGATAACAG...GTAGAAGGAACGGGTGTTTGTCTGTTTTGGGTTGATGAAGGGTCTTGTCATTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030848.3 ENSMUST00000148596.8 |
||
| CDS-3UTR CAA 90 bp | TTGAGCAGGTTTATTGGAGCTGAAACTGTCCTGAAATCAAACAGTTTCTCATACTGGCAATCTTACGAGTaGCAAAGTCAATACCCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: LSRFIGAETVLKSNSFSYWQSYE*QSQYPG Trigger: CCCTGGGTATTGACTTTGCAACTCGTAAGATTGCCA...GTATGAGAAACTGTTTGATTTCAGGACAGTTTCAGCTCCAATAAACCTGCTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS CCA 72 bp | CACACCTGGCCTTCGCAGAACATTTCCAGGTGGAGCTaGTCCCCTTCGATCCAGTGGCTCCAGCCTCTGTTT | + |
|
Preference number: 6 (lower is better) Translates to: HTWPSQNISRWS*SPSIQWLQPLF Trigger: AAACAGAGGCTGGAGCCACTGGATCGAAGGGGACCAGCTCCACCTGGAAATGTTCTGCGAAGGCCAGGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS CAA 90 bp | GTTCCTGAGGCTGCTGCACGTCTGGATGGTGAAGGAGTCCCCATTTaGCTCAATCACTTTCTGTGGCTTCAGCAACTTGGCAATCTTACG | + |
|
Preference number: 6 (lower is better) Translates to: VPEAAARLDGEGVPI*LNHFLWLQQLGNLT Trigger: CGTAAGATTGCCAAGTTGCTGAAGCCACAGAAAGTGATTGAGCAAAATGGGGACTCCTTCACCATCCAGACGTGCAGCAGCCTCAGGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS GCA 72 bp | TTTCTGTGGCTTCAGCAACTTGGCAATCTTACGAGTTaGAAAGTCAATACCCAGGGCCAGCATGTAGCCCTC | + |
|
Preference number: 6 (lower is better) Translates to: FLWLQQLGNLTS*KVNTQGQHVAL Trigger: GAGGGCTACATGCTGGCCCTGGGTATTGACTTTGCAACTCGTAAGATTGCCAAGTTGCTGAAGCCACAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS CAA 72 bp | CTTTCTGTGGCTTCAGCAACTTGGCAATCTTACGAGTaGCAAAGTCAATACCCAGGGCCAGCATGTAGCCCT | + |
|
Preference number: 6 (lower is better) Translates to: LSVASATWQSYE*QSQYPGPACSP Trigger: AGGGCTACATGCTGGCCCTGGGTATTGACTTTGCAACTCGTAAGATTGCCAAGTTGCTGAAGCCACAGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030848.3 |
||
| CDS CAA 90 bp | CTCCAGCCTCTGTTTTTCTTCTCTCCTCTCTGTACGCAAGTGAGTTaGTCATTCTCCCAGGTAACCAGGCTCGTGCATTTTCTGTTATCC | + |
|
Preference number: 6 (lower is better) Translates to: LQPLFFFSPLCTQVS*SFSQVTRLVHFLLS Trigger: GGATAACAGAAAATGCACGAGCCTGGTTACCTGGGAGAATGACAAACTCACTTGCGTACAGAGAGGAGAGAAGAAAAACAGAGGCTGGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030848.3 ENSMUST00000148596.8 |
||
| CDS CAA 72 bp | CTGTTTTTCTTCTCTCCTCTCTGTACGCAAGTGAGTTaGTCATTCTCCCAGGTAACCAGGCTCGTGCATTTT | + |
|
Preference number: 6 (lower is better) Translates to: LFFFSPLCTQVS*SFSQVTRLVHF Trigger: AAAATGCACGAGCCTGGTTACCTGGGAGAATGACAAACTCACTTGCGTACAGAGAGGAGAGAAGAAAAACAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030848.3 ENSMUST00000148596.8 |
||