Pregenerated sensors for RBP4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024990Ensembl transcript IDs: ENSMUST00000025951.14, ENSMUST00000112335.4, ENSMUST00000236283.2, ENSMUST00000237287.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCAGACATACAGTTGTGTaGACAGAGTCAGTGACTCTC | + |
|
Preference number: 2 (lower is better) Translates to: VTICLINQVWNPKPQTSFRHTVV*TESVTL Trigger: GAGAGTCACTGACTCTGTTCACACAACTGTATGTCT...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| 3UTR TCA 72 bp | ATCTTTCAGGGACCTTCAGTAAGACATACAGTTGTGTaGACAGAGTCAGTGACTCTCATGTACTTTGGACGA | + |
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Preference number: 3 (lower is better) Translates to: IFQGPSVRHTVV*TESVTLMYFGR Trigger: TCGTCCAAAGTACATGAGAGTCACTGACTCTGTTCACACAACTGTATGTCTTACTGAAGGTCCCTGAAAGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CCA 90 bp | TTGGAATCCCAAGCCTCAAACATCTTTCAGGGACCTTCAGTAAGACATACAGTTTCAGGGTGGTCTCGGTaGAGCCAAACTCTCCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: LESQASNIFQGPSVRHTVSGWSR*SQTLQP Trigger: GGGCTGGAGAGTTTGGCTCCACCGAGACCACCCTGA...AACTGTATGTCTTACTGAAGGTCCCTGAAAGATGTTTGAGGCTTGGGATTCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025951.14 |
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| CDS-3UTR GCA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCGGAAGCTGCTCACCCTaGAGTCGCGCTCGGCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: VTICLINQVWNPKPQTSFGSCSP*SRARRC Trigger: GCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCC...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CCA 90 bp | ACCTTCAGTAAGACATACAGTTGTGTGAACAGAGTCAGTGACTCTCATGTACTTGAGCTCCGCTCAGGGTaGTCTCGGTGGAGCCAAACT | + |
|
Preference number: 4 (lower is better) Translates to: TFSKTYSCVNRVSDSHVLELRSG*SRWSQT Trigger: AGTTTGGCTCCACCGAGACCACCCTGAGCGGAGCTC...AAGTACATGAGAGTCACTGACTCTGTTCACACAACTGTATGTCTTACTGAAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025951.14 |
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| CDS-3UTR TCA 90 bp | TTGGAATCCCAAGCCTCAAACATCTTTCAGGGACCTTCAGTAAGACATACAGTTTGTCGAAGTTCTCCTTaGCTCGGAAGCTGCTCACCC | + |
|
Preference number: 4 (lower is better) Translates to: LESQASNIFQGPSVRHTVCRSSP*LGSCSP Trigger: GGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACA...AACTGTATGTCTTACTGAAGGTCCCTGAAAGATGTTTGAGGCTTGGGATTCCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CCA 90 bp | ACCTTCAGTAAGACATACAGTTGTGTGAACAGAGTCAGTGACTCTCATGTACTTCCTCGGGGTCCTTTTTaGCGATGGCATACCAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: TFSKTYSCVNRVSDSHVLPRGPF*RWHTRA Trigger: GGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGG...AAGTACATGAGAGTCACTGACTCTGTTCACACAACTGTATGTCTTACTGAAGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR TCA 90 bp | ACCTTCAGTAAGACATACAGTTGTGTGAACAGAGTCAGTGACTCTCATGTACTTGCTGTGGCGCTCATATaGCCCTTCTCGTCCACAGAA | + |
|
Preference number: 4 (lower is better) Translates to: TFSKTYSCVNRVSDSHVLAVALI*PFSSTE Trigger: TTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGC...AAGTACATGAGAGTCACTGACTCTGTTCACACAACTGTATGTCTTACTGAAGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR TCA 90 bp | TTGGAATCCCAAGCCTCAAACATCTTTCAGGGACCTTCAGTAAGACATACAGTTCGTAGTCCGTGTCGATaGTCCAGTGGTCATCGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: LESQASNIFQGPSVRHTVRSPCR*SSGHRF Trigger: GAAACGATGACCACTGGATCATCGACACGGACTACG...AACTGTATGTCTTACTGAAGGTCCCTGAAAGATGTTTGAGGCTTGGGATTCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CCA 90 bp | TTGGAATCCCAAGCCTCAAACATCTTTCAGGGACCTTCAGTAAGACATACAGTTCTGGGCTCAGGCCATTaGGGTCACGAGAAAACACAA | + |
|
Preference number: 4 (lower is better) Translates to: LESQASNIFQGPSVRHTVLGSGH*GHEKTQ Trigger: TTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAG...AACTGTATGTCTTACTGAAGGTCCCTGAAAGATGTTTGAGGCTTGGGATTCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR GCA 90 bp | ACCTTCAGTAAGACATACAGTTGTGTGAACAGAGTCAGTGACTCTCATGTACTTAGTGCCCACCATGTCTaGACACACTTCCCAGTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TFSKTYSCVNRVSDSHVLSAHHV*THFPVA Trigger: AGCAACTGGGAAGTGTGTGCAGACATGGTGGGCACT...AAGTACATGAGAGTCACTGACTCTGTTCACACAACTGTATGTCTTACTGAAGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR TCA 90 bp | TTGGAATCCCAAGCCTCAAACATCTTTCAGGGACCTTCAGTAAGACATACAGTTCCCAGTACTTCATCTTaGACTTGGCAGGATCTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: LESQASNIFQGPSVRHTVPSTSS*TWQDLQ Trigger: CTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGG...AACTGTATGTCTTACTGAAGGTCCCTGAAAGATGTTTGAGGCTTGGGATTCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR GCA 90 bp | ACCTTCAGTAAGACATACAGTTGTGTGAACAGAGTCAGTGACTCTCATGTACTTGCGATGATGTTGTCTTaGAAAAAGAGACCCTCGGGG | + |
|
Preference number: 4 (lower is better) Translates to: TFSKTYSCVNRVSDSHVLAMMLS*KKRPSG Trigger: CCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGC...AAGTACATGAGAGTCACTGACTCTGTTCACACAACTGTATGTCTTACTGAAGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR GCA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCGTGCCATCCAGATTCTaGAGGCGGCAGGAGTACTGC | + |
|
Preference number: 4 (lower is better) Translates to: VTICLINQVWNPKPQTSFVPSRF*RRQEYC Trigger: GCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCAC...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR GCA 90 bp | TTGGAATCCCAAGCCTCAAACATCTTTCAGGGACCTTCAGTAAGACATACAGTTAAAGGAGTAGCTGTCTaGACAGGTGCCATCCAGATT | + |
|
Preference number: 4 (lower is better) Translates to: LESQASNIFQGPSVRHTVKGVAV*TGAIQI Trigger: AATCTGGATGGCACCTGTGCAGACAGCTACTCCTTT...AACTGTATGTCTTACTGAAGGTCCCTGAAAGATGTTTGAGGCTTGGGATTCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CCA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCCCTCGGGGTCCTTTTTaGCGATGGCATACCAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: VTICLINQVWNPKPQTSFPRGPF*RWHTRA Trigger: GGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGG...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CCA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCGACGGACTCGTCCCTTaGCTGTGGCGCTCATATGAC | + |
|
Preference number: 4 (lower is better) Translates to: VTICLINQVWNPKPQTSFDGLVP*LWRSYD Trigger: GTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTC...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR TCA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCTGTCGAAGTTCTCCTTaGCTCGGAAGCTGCTCACCC | + |
|
Preference number: 4 (lower is better) Translates to: VTICLINQVWNPKPQTSFCRSSP*LGSCSP Trigger: GGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACA...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR TCA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCGCTGTGGCGCTCATATaGCCCTTCTCGTCCACAGAA | + |
|
Preference number: 4 (lower is better) Translates to: VTICLINQVWNPKPQTSFAVALI*PFSSTE Trigger: TTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGC...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CCA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCCTCGTCCCTTGGCTGTaGCGCTCATATGACCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: VTICLINQVWNPKPQTSFLVPWL*RSYDPS Trigger: AGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAG...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR TCA 90 bp | GGTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCGTAGTCCGTGTCGATaGTCCAGTGGTCATCGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: GDYMFNKPSLESQASNIFRSPCR*SSGHRF Trigger: GAAACGATGACCACTGGATCATCGACACGGACTACG...AAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR GCA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCAGTGCCCACCATGTCTaGACACACTTCCCAGTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: VTICLINQVWNPKPQTSFSAHHV*THFPVA Trigger: AGCAACTGGGAAGTGTGTGCAGACATGGTGGGCACT...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CCA 90 bp | GGTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTTCATCGTTTCCTCGCTaGAGAAAGGAGGCTACACCC | + |
|
Preference number: 4 (lower is better) Translates to: GDYMFNKPSLESQASNIFSSFPR*RKEATP Trigger: GGGTGTAGCCTCCTTTCTCCAGCGAGGAAACGATGA...AAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CCA 90 bp | GGTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCTGGGCTCAGGCCATTaGGGTCACGAGAAAACACAA | + |
|
Preference number: 4 (lower is better) Translates to: GDYMFNKPSLESQASNIFLGSGH*GHEKTQ Trigger: TTGTGTTTTCTCGTGACCCCAATGGCCTGAGCCCAG...AAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR TCA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCGATCTTCAGTGTCTGTaGAAGTGCCCACCATGTCTG | + |
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Preference number: 4 (lower is better) Translates to: VTICLINQVWNPKPQTSFDLQCL*KCPPCL Trigger: CAGACATGGTGGGCACTTTCACAGACACTGAAGATC...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR GCA 90 bp | GGTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTGCGATGATGTTGTCTTaGAAAAAGAGACCCTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: GDYMFNKPSLESQASNIFAMMLS*KKRPSG Trigger: CCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGC...AAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR TCA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCCCCAGTACTTCATCTTaGACTTGGCAGGATCTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: VTICLINQVWNPKPQTSFPSTSS*TWQDLQ Trigger: CTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGG...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS TCA 90 bp | TGGCATACCAGAGCCCAGAGAAACGAGCCTTGTCGAAGTTCTCCTTaGCTCGGAAGCTGCTCACCCTGCAGTCGCGCTCGGCGCTGCCGC | + |
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Preference number: 5 (lower is better) Translates to: WHTRAQRNEPCRSSP*LGSCSPCSRARRCR Trigger: GCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTTTCTCTGGGCTCTGGTATGCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 ENSMUST00000236283.2 ENSMUST00000237287.2 |
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| CDS TCA 90 bp | GGCGGCAGGAGTACTGCAGAGCGAAGGTGTCGTAGTCCGTGTCGATaGTCCAGTGGTCATCGTTTCCTCGCTGGAGAAAGGAGGCTACAC | + |
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Preference number: 5 (lower is better) Translates to: GGRSTAERRCRSPCR*SSGHRFLAGERRLH Trigger: GTGTAGCCTCCTTTCTCCAGCGAGGAAACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACTCCTGCCGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS GCA 90 bp | GCTCAGGCCATTGGGGTCACGAGAAAACACAAAGGAGTAGCTGTCTaGACAGGTGCCATCCAGATTCTGCAGGCGGCAGGAGTACTGCAG | + |
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Preference number: 5 (lower is better) Translates to: AQAIGVTRKHKGVAV*TGAIQILQAAGVLQ Trigger: CTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATGGCCTGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS GCA 90 bp | CATTGGGGTCACGAGAAAACACAAAGGAGTAGCTGTCTGCACAGGTaGCATCCAGATTCTGCAGGCGGCAGGAGTACTGCAGAGCGAAGG | + |
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Preference number: 5 (lower is better) Translates to: HWGHEKTQRSSCLHR*HPDSAGGRSTAERR Trigger: CCTTCGCTCTGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTGACCCCAATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS GCA 90 bp | GAACTTGGCAGGATCTTCAGTGTCTGTGAAAGTGCCCACCATGTCTaGACACACTTCCCAGTTGCTCAGAAGACGGACTCGTCCCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: ELGRIFSVCESAHHV*THFPVAQKTDSSLG Trigger: GCCAAGGGACGAGTCCGTCTTCTGAGCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 ENSMUST00000236283.2 |
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| CDS CCA 90 bp | TGTCTGCACACACTTCCCAGTTGCTCAGAAGACGGACTCGTCCCTTaGCTGTGGCGCTCATATGACCCTTCTCGTCCACAGAAAACTCAG | + |
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Preference number: 5 (lower is better) Translates to: CLHTLPSCSEDGLVP*LWRSYDPSRPQKTQ Trigger: CTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAGCAACTGGGAAGTGTGTGCAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 ENSMUST00000236283.2 |
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| CDS-3UTR CAA 90 bp | TTGGAATCCCAAGCCTCAAACATCTTTCAGGGACCTTCAGTAAGACATACAGTTCCAGAGAAACGAGCCTaGTCGAAGTTCTCCTTGACT | + |
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Preference number: 5 (lower is better) Translates to: LESQASNIFQGPSVRHTVPEKRA*SKFSLT Trigger: AGTCAAGGAGAACTTCGACAAGGCTCGTTTCTCTGG...AACTGTATGTCTTACTGAAGGTCCCTGAAAGATGTTTGAGGCTTGGGATTCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CAA 90 bp | GGTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCCCTCGGGGTCCTTTTaGGCGATGGCATACCAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: GDYMFNKPSLESQASNIFPSGSF*AMAYQS Trigger: GCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGG...AAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CAA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCCCCTCGGGGTCCTTTTaGGCGATGGCATACCAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: VTICLINQVWNPKPQTSFPSGSF*AMAYQS Trigger: GCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGG...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CAA 90 bp | ACCTTCAGTAAGACATACAGTTGTGTGAACAGAGTCAGTGACTCTCATGTACTTCCAGAGAAACGAGCCTaGTCGAAGTTCTCCTTGACT | + |
|
Preference number: 5 (lower is better) Translates to: TFSKTYSCVNRVSDSHVLPEKRA*SKFSLT Trigger: AGTCAAGGAGAACTTCGACAAGGCTCGTTTCTCTGG...AAGTACATGAGAGTCACTGACTCTGTTCACACAACTGTATGTCTTACTGAAGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CAA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCTTGTCGAAGTTCTCCTaGACTCGGAAGCTGCTCACC | + |
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Preference number: 5 (lower is better) Translates to: VTICLINQVWNPKPQTSFLSKFS*TRKLLT Trigger: GGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAA...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CAA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCCCCCAGTACTTCATCTaGAACTTGGCAGGATCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: VTICLINQVWNPKPQTSFPQYFI*NLAGSS Trigger: TGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGG...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CAA 90 bp | GGTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCCCCAGTACTTCATCTaGAACTTGGCAGGATCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: GDYMFNKPSLESQASNIFPQYFI*NLAGSS Trigger: TGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGG...AAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CAA 90 bp | GGTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTAACTCAGCGATGATGTaGTCTTGCAAAAAGAGACCC | + |
|
Preference number: 5 (lower is better) Translates to: GDYMFNKPSLESQASNIFNSAMM*SCKKRP Trigger: GGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTT...AAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS-3UTR CAA 90 bp | GTGACTATATGTTTAATAAACCAAGTTTGGAATCCCAAGCCTCAAACATCTTTCTACTTCATCTTGAACTaGGCAGGATCTTCAGTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: VTICLINQVWNPKPQTSFYFILN*AGSSVS Trigger: AGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTA...GAAAGATGTTTGAGGCTTGGGATTCCAAACTTGGTTTATTAAACATATAGTCAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS GCA 72 bp | CTCGGAAGCTGCTCACCCTGCAGTCGCGCTCGGCGCTaGCGCCTCCCAGAGCCGCCAGCAGCACGAGCGCCC | + |
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Preference number: 6 (lower is better) Translates to: LGSCSPCSRARR*RLPEPPAARAP Trigger: GGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 ENSMUST00000236283.2 ENSMUST00000237287.2 |
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| CDS CCA 72 bp | GTCCCACGTCGCCTATGCTCCGAGCTCCGCTCAGGGTaGTCTCGGTGGAGCCAAACTCTCCAGCCCAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: VPRRLCSELRSG*SRWSQTLQPRG Trigger: TCCTCTGGGCTGGAGAGTTTGGCTCCACCGAGACCACCCTGAGCGGAGCTCGGAGCATAGGCGACGTGGGAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000237287.2 |
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| CDS GCA 72 bp | ATCCATCTGTACTGCCTCTCTAGGCACAGCTCCTCCTaGCGCTGCCTCACCAGCCTCCGTGTCTCTGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: IHLYCLSRHSSS*RCLTSLRVSGL Trigger: GAGCCCAGAGACACGGAGGCTGGTGAGGCAGCGGCAGGAGGAGCTGTGCCTAGAGAGGCAGTACAGATGGAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS CAA 90 bp | ATGGCATACCAGAGCCCAGAGAAACGAGCCTTGTCGAAGTTCTCCTaGACTCGGAAGCTGCTCACCCTGCAGTCGCGCTCGGCGCTGCCG | + |
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Preference number: 6 (lower is better) Translates to: MAYQSPEKRALSKFS*TRKLLTLQSRSALP Trigger: CGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTTTCTCTGGGCTCTGGTATGCCAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 ENSMUST00000236283.2 ENSMUST00000237287.2 |
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| CDS TCA 72 bp | AGAGCCCAGAGAAACGAGCCTTGTCGAAGTTCTCCTTaGCTCGGAAGCTGCTCACCCTGCAGTCGCGCTCGG | + |
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Preference number: 6 (lower is better) Translates to: RAQRNEPCRSSP*LGSCSPCSRAR Trigger: CCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTTTCTCTGGGCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 ENSMUST00000236283.2 ENSMUST00000237287.2 |
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| CDS CAA 72 bp | CAGAGCCCAGAGAAACGAGCCTTGTCGAAGTTCTCCTaGACTCGGAAGCTGCTCACCCTGCAGTCGCGCTCG | + |
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Preference number: 6 (lower is better) Translates to: QSPEKRALSKFS*TRKLLTLQSRS Trigger: CGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTTTCTCTGGGCTCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 ENSMUST00000236283.2 ENSMUST00000237287.2 |
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| CDS CAA 90 bp | GGGTCCTTTTTGGCGATGGCATACCAGAGCCCAGAGAAACGAGCCTaGTCGAAGTTCTCCTTGACTCGGAAGCTGCTCACCCTGCAGTCG | + |
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Preference number: 6 (lower is better) Translates to: GSFLAMAYQSPEKRA*SKFSLTRKLLTLQS Trigger: CGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGTTTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 ENSMUST00000236283.2 ENSMUST00000237287.2 |
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| CDS CCA 72 bp | ACACTTCCCAGTTGCTCAGAAGACGGACTCGTCCCTTaGCTGTGGCGCTCATATGACCCTTCTCGTCCACAG | + |
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Preference number: 6 (lower is better) Translates to: TLPSCSEDGLVP*LWRSYDPSRPQ Trigger: CTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAGCAACTGGGAAGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 ENSMUST00000236283.2 |
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| CDS CCA 72 bp | CCCAGTTGCTCAGAAGACGGACTCGTCCCTTGGCTGTaGCGCTCATATGACCCTTCTCGTCCACAGAAAACT | + |
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Preference number: 6 (lower is better) Translates to: PSCSEDGLVPWL*RSYDPSRPQKT Trigger: AGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAGCAACTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 ENSMUST00000236283.2 |
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| CDS TCA 72 bp | AGTACTGCAGAGCGAAGGTGTCGTAGTCCGTGTCGATaGTCCAGTGGTCATCGTTTCCTCGCTGGAGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: STAERRCRSPCR*SSGHRFLAGER Trigger: CCTTTCTCCAGCGAGGAAACGATGACCACTGGATCATCGACACGGACTACGACACCTTCGCTCTGCAGTACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS GCA 72 bp | CACGAGAAAACACAAAGGAGTAGCTGTCTGCACAGGTaGCATCCAGATTCTGCAGGCGGCAGGAGTACTGCA | + |
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Preference number: 6 (lower is better) Translates to: HEKTQRSSCLHR*HPDSAGGRSTA Trigger: TGCAGTACTCCTGCCGCCTGCAGAATCTGGATGGCACCTGTGCAGACAGCTACTCCTTTGTGTTTTCTCGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS GCA 72 bp | AGGATCTTCAGTGTCTGTGAAAGTGCCCACCATGTCTaGACACACTTCCCAGTTGCTCAGAAGACGGACTCG | + |
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Preference number: 6 (lower is better) Translates to: RIFSVCESAHHV*THFPVAQKTDS Trigger: CGAGTCCGTCTTCTGAGCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 ENSMUST00000236283.2 |
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| CDS CCA 72 bp | TCCGTGTCGATGATCCAGTGGTCATCGTTTCCTCGCTaGAGAAAGGAGGCTACACCCCAGTACTTCATCTTG | + |
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Preference number: 6 (lower is better) Translates to: SVSMIQWSSFPR*RKEATPQYFIL Trigger: CAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAAACGATGACCACTGGATCATCGACACGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS CAA 90 bp | CCTCGCTGGAGAAAGGAGGCTACACCCCAGTACTTCATCTTGAACTaGGCAGGATCTTCAGTGTCTGTGAAAGTGCCCACCATGTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: PRWRKEATPQYFILN*AGSSVSVKVPTMSA Trigger: TGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS CAA 90 bp | TCGTTTCCTCGCTGGAGAAAGGAGGCTACACCCCAGTACTTCATCTaGAACTTGGCAGGATCTTCAGTGTCTGTGAAAGTGCCCACCATG | + |
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Preference number: 6 (lower is better) Translates to: SFPRWRKEATPQYFI*NLAGSSVSVKVPTM Trigger: CATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAAACGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS CAA 72 bp | AGAAAGGAGGCTACACCCCAGTACTTCATCTTGAACTaGGCAGGATCTTCAGTGTCTGTGAAAGTGCCCACC | + |
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Preference number: 6 (lower is better) Translates to: RKEATPQYFILN*AGSSVSVKVPT Trigger: GGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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| CDS CAA 72 bp | CGCTGGAGAAAGGAGGCTACACCCCAGTACTTCATCTaGAACTTGGCAGGATCTTCAGTGTCTGTGAAAGTG | + |
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Preference number: 6 (lower is better) Translates to: RWRKEATPQYFI*NLAGSSVSVKV Trigger: CACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025951.14 ENSMUST00000112335.4 |
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