RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RBP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041534

Ensembl transcript IDs: ENSMUST00000035695.10

Found 220 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGCCATTCACATGTGGTGTCTACACATTCGAGCTGTGTAGCACATaGCAAGGCTTGGCAAGGGAAGCAATGACAACAGGGCTGTGGGGG +
Preference number: 1 (lower is better)
Translates to: LPFTCGVYTFELCST*QGLAREAMTTGLWG
Trigger: CCCCCACAGCCCTGTTGTCATTGCTTCCCTTGCCAAGCCTTGTCATGTGCTACACAGCTCGAATGTGTAGACACCACATGTGAATGGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR TCA 90 bp TTGAAGGGTGCCCCATGGACTCCCTGGAGTCTTGGTGGGTATTCGTaGGAGTCTTTGATGTGGGGCTGTGTTATCTTTGGAGAGCTTTGC +
Preference number: 1 (lower is better)
Translates to: LKGAPWTPWSLGGYS*ESLMWGCVIFGELC
Trigger: GCAAAGCTCTCCAAAGATAACACAGCCCCACATCAAAGACTCTCACGAATACCCACCAAGACTCCAGGGAGTCCATGGGGCACCCTTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR TCA 90 bp CCCCATGGACTCCCTGGAGTCTTGGTGGGTATTCGTGAGAGTCTTTaGTGTGGGGCTGTGTTATCTTTGGAGAGCTTTGCCACTTTATTA +
Preference number: 1 (lower is better)
Translates to: PHGLPGVLVGIRESL*CGAVLSLESFATLL
Trigger: TAATAAAGTGGCAAAGCTCTCCAAAGATAACACAGCCCCACATCAAAGACTCTCACGAATACCCACCAAGACTCCAGGGAGTCCATGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR CCA 90 bp TTGGAAGACCACACAGAGGCAGGCTACGGGCCACCATTGTCATCCTaGAATATTCACAAGAGGACTGTGGATATAGAAAGTCAGATACAT +
Preference number: 1 (lower is better)
Translates to: LEDHTEAGYGPPLSS*NIHKRTVDIESQIH
Trigger: ATGTATCTGACTTTCTATATCCACAGTCCTCTTGTGAATATTCCAGGATGACAATGGTGGCCCGTAGCCTGCCTCTGTGTGGTCTTCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR GCA 90 bp TGTGGGGCTGTGTTATCTTTGGAGAGCTTTGCCACTTTATTAGGCCCTGAGCAGGTGGCCCAGAGAGCCTaGCACCACAGCTCTGGCCGT +
Preference number: 2 (lower is better)
Translates to: CGAVLSLESFATLLGPEQVAQRA*HHSSGR
Trigger: ACGGCCAGAGCTGTGGTGGCAGGCTCTCTGGGCCAC...CTGCTCAGGGCCTAATAAAGTGGCAAAGCTCTCCAAAGATAACACAGCCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR CCA 90 bp GGAAGGGCTCCTAACCTCAGAAGCCATGAGCTGAAGGTCCCCACTGAGTACCAGGGGATGCCTTTGAGATaGCTGAGCTCCCACTTTTTG +
Preference number: 2 (lower is better)
Translates to: GRAPNLRSHELKVPTEYQGMPLR*LSSHFL
Trigger: CAAAAAGTGGGAGCTCAGCCATCTCAAAGGCATCCC...CTGGTACTCAGTGGGGACCTTCAGCTCATGGCTTCTGAGGTTAGGAGCCCTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR CCA 90 bp TGTGGGGCTGTGTTATCTTTGGAGAGCTTTGCCACTTTATTAGGCCCTGAGCAGCTCTTGGAGACAGTATaGGGACAGGAGACAGGCAGC +
Preference number: 2 (lower is better)
Translates to: CGAVLSLESFATLLGPEQLLETV*GQETGS
Trigger: GCTGCCTGTCTCCTGTCCCCATACTGTCTCCAAGAG...CTGCTCAGGGCCTAATAAAGTGGCAAAGCTCTCCAAAGATAACACAGCCCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR TCA 90 bp CATTCACATGTGGTGTCTACACATTCGAGCTGTGTAGCACATGACAAGGCTTGGGCTGAAGGTCCCCACTaGGTACCAGAAACACACAGA +
Preference number: 2 (lower is better)
Translates to: HSHVVSTHSSCVAHDKAWAEGPH*VPETHR
Trigger: TCTGTGTGTTTCTGGTACTCAGTGGGGACCTTCAGC...CCAAGCCTTGTCATGTGCTACACAGCTCGAATGTGTAGACACCACATGTGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR TCA 90 bp GTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGTCAGAAGCCATGAGCTaGAGGTCCCCACTGAGTACC +
Preference number: 2 (lower is better)
Translates to: VDLCPITLPFTCGVYTFESEAMS*RSPLST
Trigger: GGTACTCAGTGGGGACCTTCAGCTCATGGCTTCTGA...CTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR TCA 90 bp CCTGGTCTGCATAGAGTCTATATAGGGTCAGTTGAAGGGTGCCCCATGGACTCCATTCGTGAGAGTCTTTaGTGTGGGGCTGTGTTATCT +
Preference number: 2 (lower is better)
Translates to: PGLHRVYIGSVEGCPMDSIRESL*CGAVLS
Trigger: AGATAACACAGCCCCACATCAAAGACTCTCACGAAT...GGAGTCCATGGGGCACCCTTCAACTGACCCTATATAGACTCTATGCAGACCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR TCA 90 bp ATGACAAGGCTTGGCAAGGGAAGCAATGACAACAGGGCTGTGGGGGAGGATGGGTGCTTTCTGAAAAGGTaGCTACTAGAAAAAGCAAAC +
Preference number: 2 (lower is better)
Translates to: MTRLGKGSNDNRAVGEDGCFLKR*LLEKAN
Trigger: GTTTGCTTTTTCTAGTAGTCACCTTTTCAGAAAGCA...CCCATCCTCCCCCACAGCCCTGTTGTCATTGCTTCCCTTGCCAAGCCTTGTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR CCA 90 bp CCTGGTCTGCATAGAGTCTATATAGGGTCAGTTGAAGGGTGCCCCATGGACTCCCCACCATTGTCATCCTaGAATATTCACAAGAGGACT +
Preference number: 2 (lower is better)
Translates to: PGLHRVYIGSVEGCPMDSPPLSS*NIHKRT
Trigger: AGTCCTCTTGTGAATATTCCAGGATGACAATGGTGG...GGAGTCCATGGGGCACCCTTCAACTGACCCTATATAGACTCTATGCAGACCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR CAA 90 bp ACACTGAATTTGGAAGACCACACAGAGGCAGGCTACGGGCCACCATaGTCATCCTGGAATATTCACAAGAGGACTGTGGATATAGAAAGT +
Preference number: 2 (lower is better)
Translates to: TLNLEDHTEAGYGPP*SSWNIHKRTVDIES
Trigger: ACTTTCTATATCCACAGTCCTCTTGTGAATATTCCAGGATGACAATGGTGGCCCGTAGCCTGCCTCTGTGTGGTCTTCCAAATTCAGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR CCA 90 bp CAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTATGACAACAGGGCTGTaGGGGAGGATGGGATACATA +
Preference number: 2 (lower is better)
Translates to: QCRPVSYYSAIHMWCLHIMTTGL*GRMGYI
Trigger: TATGTATCCCATCCTCCCCCACAGCCCTGTTGTCAT...AATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR TCA 90 bp CAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTTTCAATTCCCTCTCCTaGCAGAATTGCTCTTGGAGA +
Preference number: 2 (lower is better)
Translates to: QCRPVSYYSAIHMWCLHIFNSLS*QNCSWR
Trigger: TCTCCAAGAGCAATTCTGTCAGGAGAGGGAATTGAA...AATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR CAA 90 bp GCTGTGACACTGGAAAGTGCTACAAGCACTAAGCACGTCTTTCTTTaGCTTTCTGAAAAGGTGACTACTAGAAAAAGCAAACTGTCACGT +
Preference number: 2 (lower is better)
Translates to: AVTLESATSTKHVFL*LSEKVTTRKSKLSR
Trigger: ACGTGACAGTTTGCTTTTTCTAGTAGTCACCTTTTCAGAAAGCAAAAGAAAGACGTGCTTAGTGCTTGTAGCACTTTCCAGTGTCACAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR TCA 90 bp CTGAGTACCAGAAACACACAGATGTTCAGTAACCCCAGACTACACACTGAATTTGTATTTCATGCATTTTaGCCTAGTAATGCTGTCCAC +
Preference number: 2 (lower is better)
Translates to: LSTRNTQMFSNPRLHTEFVFHAF*PSNAVH
Trigger: GTGGACAGCATTACTAGGTCAAAATGCATGAAATAC...AAATTCAGTGTGTAGTCTGGGGTTACTGAACATCTGTGTGTTTCTGGTACTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR TCA 90 bp GATTTTTACTCTAGCATAGGCTTGTTCAGGTATTTCATGCATTTTGACCTAGTAGTTAAAGAGGGGCTGTaGCACTGGAAAGTGCTACAA +
Preference number: 2 (lower is better)
Translates to: DFYSSIGLFRYFMHFDLVVKEGL*HWKVLQ
Trigger: TTGTAGCACTTTCCAGTGTCACAGCCCCTCTTTAAC...TACTAGGTCAAAATGCATGAAATACCTGAACAAGCCTATGCTAGAGTAAAAATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR CCA 72 bp TCAGTTGAAGGGTGCCCCATGGACTCCCTGGAGTCTTaGTGGGTATTCGTGAGAGTCTTTGATGTGGGGCTG +
Preference number: 3 (lower is better)
Translates to: SVEGCPMDSLES*WVFVRVFDVGL
Trigger: CAGCCCCACATCAAAGACTCTCACGAATACCCACCAAGACTCCAGGGAGTCCATGGGGCACCCTTCAACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR TCA 72 bp GCCCCATGGACTCCCTGGAGTCTTGGTGGGTATTCGTaGGAGTCTTTGATGTGGGGCTGTGTTATCTTTGGA +
Preference number: 3 (lower is better)
Translates to: APWTPWSLGGYS*ESLMWGCVIFG
Trigger: TCCAAAGATAACACAGCCCCACATCAAAGACTCTCACGAATACCCACCAAGACTCCAGGGAGTCCATGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR CAA 90 bp GGGGCTGTGTTATCTTTGGAGAGCTTTGCCACTTTATTAGGCCCTGAGCAGCAACTGAGCTCCCACTTTTaGGAGAGAGACTTTTTGGAG +
Preference number: 3 (lower is better)
Translates to: GAVLSLESFATLLGPEQQLSSHF*ERDFLE
Trigger: CTCCAAAAAGTCTCTCTCCAAAAAGTGGGAGCTCAG...TTGCTGCTCAGGGCCTAATAAAGTGGCAAAGCTCTCCAAAGATAACACAGCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR TCA 72 bp TGCCTTACTTTACATCCGTGGTTCAATTCCCTCTCCTaGCAGAATTGCTCTTGGAGACAGTATGGGGACAGG +
Preference number: 3 (lower is better)
Translates to: CLTLHPWFNSLS*QNCSWRQYGDR
Trigger: CCTGTCCCCATACTGTCTCCAAGAGCAATTCTGTCAGGAGAGGGAATTGAACCACGGATGTAAAGTAAGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR GCA 72 bp GGGAGGTGGGAAGGGCAGGGATTCCTGGAATTTAAGTaGTTAAGCCCTGTAGAGCAGTCACACATTTATCTT +
Preference number: 3 (lower is better)
Translates to: GRWEGQGFLEFK*LSPVEQSHIYL
Trigger: AAGATAAATGTGTGACTGCTCTACAGGGCTTAAGCACTTAAATTCCAGGAATCCCTGCCCTTCCCACCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR CCA 72 bp CACACAGAGGCAGGCTACGGGCCACCATTGTCATCCTaGAATATTCACAAGAGGACTGTGGATATAGAAAGT +
Preference number: 3 (lower is better)
Translates to: HTEAGYGPPLSS*NIHKRTVDIES
Trigger: ACTTTCTATATCCACAGTCCTCTTGTGAATATTCCAGGATGACAATGGTGGCCCGTAGCCTGCCTCTGTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR CAA 90 bp CAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTTACTCTAGCATAGGCTaGTTCAGGTATTTCATGCAT +
Preference number: 3 (lower is better)
Translates to: QVEGNVDLCPITLPFTCGYSSIG*FRYFMH
Trigger: ATGCATGAAATACCTGAACAAGCCTATGCTAGAGTA...ACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR CAA 90 bp AAATTAGTTTATAAGGTAGTGGGAACAAGTTGTATGAATTCTAGGGCACCAGCCGACTACACACTGAATTaGGAAGACCACACAGAGGCA +
Preference number: 3 (lower is better)
Translates to: KLVYKVVGTSCMNSRAPADYTLN*EDHTEA
Trigger: TGCCTCTGTGTGGTCTTCCAAATTCAGTGTGTAGTC...GGCTGGTGCCCTAGAATTCATACAACTTGTTCCCACTACCTTATAAACTAATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR-3UTR CAA 90 bp AAATTAGTTTATAAGGTAGTGGGAACAAGTTGTATGAATTCTAGGGCACCAGCCAAGCACGTCTTTCTTTaGCTTTCTGAAAAGGTGACT +
Preference number: 3 (lower is better)
Translates to: KLVYKVVGTSCMNSRAPAKHVFL*LSEKVT
Trigger: AGTCACCTTTTCAGAAAGCAAAAGAAAGACGTGCTT...GGCTGGTGCCCTAGAATTCATACAACTTGTTCCCACTACCTTATAAACTAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp ATGACAAGGCTTGGCAAGGGAAGCAATGACAACAGGGCTGTGGGGGAGGATGGGGGGCACGACGCAGGGTaGGGATGGCCAGGGCCTTTT +
Preference number: 4 (lower is better)
Translates to: MTRLGKGSNDNRAVGEDGGHDAG*GWPGPF
Trigger: AAAAGGCCCTGGCCATCCTCACCCTGCGTCGTGCCC...CCCATCCTCCCCCACAGCCCTGTTGTCATTGCTTCCCTTGCCAAGCCTTGTCAT
61% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp ATGACAAGGCTTGGCAAGGGAAGCAATGACAACAGGGCTGTGGGGGAGGATGGGTCCATGCTGGCCAGGTaGTGCAGCAGGCCCGGCACT +
Preference number: 4 (lower is better)
Translates to: MTRLGKGSNDNRAVGEDGSMLAR*CSRPGT
Trigger: AGTGCCGGGCCTGCTGCACCACCTGGCCAGCATGGA...CCCATCCTCCCCCACAGCCCTGTTGTCATTGCTTCCCTTGCCAAGCCTTGTCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp GGAAGGGCTCCTAACCTCAGAAGCCATGAGCTGAAGGTCCCCACTGAGTACCAGGCAGGTAGCCCACATTaGCCGGCAGCACGGACACCT +
Preference number: 4 (lower is better)
Translates to: GRAPNLRSHELKVPTEYQAGSPH*PAARTP
Trigger: AGGTGTCCGTGCTGCCGGGCAATGTGGGCTACCTGC...CTGGTACTCAGTGGGGACCTTCAGCTCATGGCTTCTGAGGTTAGGAGCCCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp AGGGAAGCAATGACAACAGGGCTGTGGGGGAGGATGGGATACATACGGAAGGGCCAGTGTGTCCGCTGGTaGGGACCACCACATCCTTGT +
Preference number: 4 (lower is better)
Translates to: REAMTTGLWGRMGYIRKGQCVRW*GPPHPC
Trigger: ACAAGGATGTGGTGGTCCTCACCAGCGGACACACTG...GCCCTTCCGTATGTATCCCATCCTCCCCCACAGCCCTGTTGTCATTGCTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp GGGAGGTGGGAAGGGCAGGGATTCCTGGAATTTAAGTGCTTAAGCCCTGTAGAGAGCTCTGGCCCGCTGTaGGATCTCTGGCCGGGCATA +
Preference number: 4 (lower is better)
Translates to: GRWEGQGFLEFKCLSPVESSGPL*DLWPGI
Trigger: TATGCCCGGCCAGAGATCGCACAGCGGGCCAGAGCT...CTCTACAGGGCTTAAGCACTTAAATTCCAGGAATCCCTGCCCTTCCCACCTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp AGGACTGCAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACAGTCTCTGGGTCCGGTaGCCCTCACCAGGAGCCTGG +
Preference number: 4 (lower is better)
Translates to: RTAGGGQCRPVSYYSAIHSLWVR*PSPGAW
Trigger: CCAGGCTCCTGGTGAGGGCCACCGGACCCAGAGACT...GTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTGCAGTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp ATGACAAGGCTTGGCAAGGGAAGCAATGACAACAGGGCTGTGGGGGAGGATGGGTGGCTGAAGTGCTCCTaGGTGATGTTGGTGCGGCGA +
Preference number: 4 (lower is better)
Translates to: MTRLGKGSNDNRAVGEDGWLKCS*VMLVRR
Trigger: TCGCCGCACCAACATCACCCAGGAGCACTTCAGCCA...CCCATCCTCCCCCACAGCCCTGTTGTCATTGCTTCCCTTGCCAAGCCTTGTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp ATGACAAGGCTTGGCAAGGGAAGCAATGACAACAGGGCTGTGGGGGAGGATGGGGCTTGGCAGCCATCTTaGCCCCCAATTCAGGGGATG +
Preference number: 4 (lower is better)
Translates to: MTRLGKGSNDNRAVGEDGAWQPS*PPIQGM
Trigger: CATCCCCTGAATTGGGGGCCAAGATGGCTGCCAAGC...CCCATCCTCCCCCACAGCCCTGTTGTCATTGCTTCCCTTGCCAAGCCTTGTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp AAGGGAAGCAATGACAACAGGGCTGTGGGGGAGGATGGGATACATACGGAAGGGAGCACAAGGCTGAGATaGAGGAGGTGGGGCCGCCAA +
Preference number: 4 (lower is better)
Translates to: KGSNDNRAVGEDGIHTEGSTRLR*RRWGRQ
Trigger: TTGGCGGCCCCACCTCCTCCATCTCAGCCTTGTGCT...CCCTTCCGTATGTATCCCATCCTCCCCCACAGCCCTGTTGTCATTGCTTCCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp GGGAGGTGGGAAGGGCAGGGATTCCTGGAATTTAAGTGCTTAAGCCCTGTAGAGGTGAGCACTGGTGCTTaGTGGGGAGCCTCGAGGGTA +
Preference number: 4 (lower is better)
Translates to: GRWEGQGFLEFKCLSPVEVSTGA*WGASRV
Trigger: TACCCTCGAGGCTCCCCAGCAAGCACCAGTGCTCAC...CTCTACAGGGCTTAAGCACTTAAATTCCAGGAATCCCTGCCCTTCCCACCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp TGTGGGGCTGTGTTATCTTTGGAGAGCTTTGCCACTTTATTAGGCCCTGAGCAGGATGCCCACGGAGAGTaGCCCTCCAGCTGTGGGCTC +
Preference number: 4 (lower is better)
Translates to: CGAVLSLESFATLLGPEQDAHGE*PSSCGL
Trigger: GAGCCCACAGCTGGAGGGGCACTCTCCGTGGGCATC...CTGCTCAGGGCCTAATAAAGTGGCAAAGCTCTCCAAAGATAACACAGCCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp AGAGAGACTTTTTGGAGTAGTGGGGACCAGCAGATGAACCCTGGAGGATGTCTGTGCCCACCTGGTAGATaGCCACGGAGAGTGCCCCTC +
Preference number: 4 (lower is better)
Translates to: RETFWSSGDQQMNPGGCLCPPGR*PRRVPL
Trigger: GAGGGGCACTCTCCGTGGGCATCTACCAGGTGGGCA...CAGACATCCTCCAGGGTTCATCTGCTGGTCCCCACTACTCCAAAAAGTCTCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp GGGGCTGTGTTATCTTTGGAGAGCTTTGCCACTTTATTAGGCCCTGAGCAGCAACCCAGGCCTCACCGGTaGTGGCACTCAGGGCCATCT +
Preference number: 4 (lower is better)
Translates to: GAVLSLESFATLLGPEQQPRPHR*WHSGPS
Trigger: AGATGGCCCTGAGTGCCAGCACCGGTGAGGCCTGGG...TTGCTGCTCAGGGCCTAATAAAGTGGCAAAGCTCTCCAAAGATAACACAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp TACACACTGAATTTGGAAGACCACACAGAGGCAGGCTACGGGCCACCATTGTCAAGGCCTCACCGGTGCTaGCACTCAGGGCCATCTGAG +
Preference number: 4 (lower is better)
Translates to: YTLNLEDHTEAGYGPPLSRPHRC*HSGPSE
Trigger: CTCAGATGGCCCTGAGTGCCAGCACCGGTGAGGCCT...TGACAATGGTGGCCCGTAGCCTGCCTCTGTGTGGTCTTCCAAATTCAGTGTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp GGAAGGGCTCCTAACCTCAGAAGCCATGAGCTGAAGGTCCCCACTGAGTACCAGCACCACTGGTCAGGATaGCTACGCTCTTCTTGGAGC +
Preference number: 4 (lower is better)
Translates to: GRAPNLRSHELKVPTEYQHHWSG*LRSSWS
Trigger: GCTCCAAGAAGAGCGTAGCCATCCTGACCAGTGGTG...CTGGTACTCAGTGGGGACCTTCAGCTCATGGCTTCTGAGGTTAGGAGCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp GGAAGGGCTCCTAACCTCAGAAGCCATGAGCTGAAGGTCCCCACTGAGTACCAGGTGGTAGGTCTGCGGTaGTTGGCAACCTCCACTTGT +
Preference number: 4 (lower is better)
Translates to: GRAPNLRSHELKVPTEYQVVGLR*LATSTC
Trigger: ACAAGTGGAGGTTGCCAACCACCGCAGACCTACCAC...CTGGTACTCAGTGGGGACCTTCAGCTCATGGCTTCTGAGGTTAGGAGCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp AGGGAAGCAATGACAACAGGGCTGTGGGGGAGGATGGGATACATACGGAAGGGCTCCTCAGATACCTCCTaGAGGTCAGCAGTGAGCTGT +
Preference number: 4 (lower is better)
Translates to: REAMTTGLWGRMGYIRKGSSDTS*RSAVSC
Trigger: ACAGCTCACTGCTGACCTTCAGGAGGTATCTGAGGA...GCCCTTCCGTATGTATCCCATCCTCCCCCACAGCCCTGTTGTCATTGCTTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp GGGGCTGTGTTATCTTTGGAGAGCTTTGCCACTTTATTAGGCCCTGAGCAGCAACTTGGCTGGAAGAGGTaGGTGGGACCAGCCGGAACC +
Preference number: 4 (lower is better)
Translates to: GAVLSLESFATLLGPEQQLGWKR*VGPAGT
Trigger: GGTTCCGGCTGGTCCCACGCACCTCTTCCAGCCAAG...TTGCTGCTCAGGGCCTAATAAAGTGGCAAAGCTCTCCAAAGATAACACAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp TACACACTGAATTTGGAAGACCACACAGAGGCAGGCTACGGGCCACCATTGTCACTGAGTAGTCCATGCTaGCCAGGTGGTGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: YTLNLEDHTEAGYGPPLSLSSPC*PGGAAG
Trigger: GCCTGCTGCACCACCTGGCCAGCATGGACTACTCAG...TGACAATGGTGGCCCGTAGCCTGCCTCTGTGTGGTCTTCCAAATTCAGTGTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp ATCCGTGGTTCAATTCCCTCTCCTGACAGAATTGCTCTTGGAGACAGTATGGGGCCCTCACCAGGAGCCTaGGATCCTCCGACACAGCCT +
Preference number: 4 (lower is better)
Translates to: IRGSIPSPDRIALGDSMGPSPGA*DPPTQP
Trigger: AGGCTGTGTCGGAGGATCCCAGGCTCCTGGTGAGGG...CCCCATACTGTCTCCAAGAGCAATTCTGTCAGGAGAGGGAATTGAACCACGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp GGAAGGGCTCCTAACCTCAGAAGCCATGAGCTGAAGGTCCCCACTGAGTACCAGGCTGTGGCAGTCCTGTaGCTAGTAAGCAGGTACACT +
Preference number: 4 (lower is better)
Translates to: GRAPNLRSHELKVPTEYQAVAVL*LVSRYT
Trigger: AGTGTACCTGCTTACTAGCCACAGGACTGCCACAGC...CTGGTACTCAGTGGGGACCTTCAGCTCATGGCTTCTGAGGTTAGGAGCCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp ATCCGTGGTTCAATTCCCTCTCCTGACAGAATTGCTCTTGGAGACAGTATGGGGTTTCGCCGACCAGTGTaGCCCAGCCCAGGGACTGCA +
Preference number: 4 (lower is better)
Translates to: IRGSIPSPDRIALGDSMGFRRPV*PSPGTA
Trigger: TGCAGTCCCTGGGCTGGGCCACACTGGTCGGCGAAA...CCCCATACTGTCTCCAAGAGCAATTCTGTCAGGAGAGGGAATTGAACCACGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp TGTGGGGCTGTGTTATCTTTGGAGAGCTTTGCCACTTTATTAGGCCCTGAGCAGGTAAGAGCACAAGGCTaGGATGGAGGAGGTGGGGCC +
Preference number: 4 (lower is better)
Translates to: CGAVLSLESFATLLGPEQVRAQG*DGGGGA
Trigger: GGCCCCACCTCCTCCATCTCAGCCTTGTGCTCTTAC...CTGCTCAGGGCCTAATAAAGTGGCAAAGCTCTCCAAAGATAACACAGCCCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp ATGACAAGGCTTGGCAAGGGAAGCAATGACAACAGGGCTGTGGGGGAGGATGGGATGTTCCTCTGTATCTaGGCCAGCAGTTCTTCTCGG +
Preference number: 4 (lower is better)
Translates to: MTRLGKGSNDNRAVGEDGMFLCI*ASSSSR
Trigger: CCGAGAAGAACTGCTGGCCCAGATACAGAGGAACAT...CCCATCCTCCCCCACAGCCCTGTTGTCATTGCTTCCCTTGCCAAGCCTTGTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp CAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTATAGGAGAGTTCCTCTaGGGAGGGAACGGCAGGGGG +
Preference number: 4 (lower is better)
Translates to: QVEGNVDLCPITLPFTCGIGEFL*GGNGRG
Trigger: CCCCCTGCCGTTCCCTCCCCAGAGGAACTCTCCTAT...ACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp GGAAGGGCTCCTAACCTCAGAAGCCATGAGCTGAAGGTCCCCACTGAGTACCAGGCAGAGCCACTAGTGTaGCTCATGAGGATGTATAGG +
Preference number: 4 (lower is better)
Translates to: GRAPNLRSHELKVPTEYQAEPLV*LMRMYR
Trigger: CCTATACATCCTCATGAGCCACACTAGTGGCTCTGC...CTGGTACTCAGTGGGGACCTTCAGCTCATGGCTTCTGAGGTTAGGAGCCCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp AGGACTGCAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACCGGCTGTCACACCACTaGTCAGGATGGCTACGCTCT +
Preference number: 4 (lower is better)
Translates to: RTAGGGQCRPVSYYSAIHRLSHH*SGWLRS
Trigger: AGAGCGTAGCCATCCTGACCAGTGGTGTGACAGCCG...GTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTGCAGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp AGGACTGCAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACCACTCATGGGCACAGTaGTGTCAGGTTCCACACCAG +
Preference number: 4 (lower is better)
Translates to: RTAGGGQCRPVSYYSAIHHSWAQ*CQVPHQ
Trigger: CTGGTGTGGAACCTGACATCACTGTGCCCATGAGTG...GTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTGCAGTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp GGGGCTGTGTTATCTTTGGAGAGCTTTGCCACTTTATTAGGCCCTGAGCAGCAAGCCCAGCCCAGGGACTaGATGAGGAAGGCAAACTCT +
Preference number: 4 (lower is better)
Translates to: GAVLSLESFATLLGPEQQAQPRD*MRKANS
Trigger: AGAGTTTGCCTTCCTCATGCAGTCCCTGGGCTGGGC...TTGCTGCTCAGGGCCTAATAAAGTGGCAAAGCTCTCCAAAGATAACACAGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp CAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTAGCAAAGGCCTCGGCTaGAGAGCCACTAGTGTGGCT +
Preference number: 4 (lower is better)
Translates to: QVEGNVDLCPITLPFTCGSKGLG*RATSVA
Trigger: AGCCACACTAGTGGCTCTGCAGCCGAGGCCTTTGCT...ACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp AGAGAGACTTTTTGGAGTAGTGGGGACCAGCAGATGAACCCTGGAGGATGTCTGTCCAGATCTCTGTGGTaGTGTTGGAGGGCCGATCGT +
Preference number: 4 (lower is better)
Translates to: RETFWSSGDQQMNPGGCLSRSLW*CWRADR
Trigger: ACGATCGGCCCTCCAACACCACCACAGAGATCTGGA...CAGACATCCTCCAGGGTTCATCTGCTGGTCCCCACTACTCCAAAAAGTCTCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp TACACACTGAATTTGGAAGACCACACAGAGGCAGGCTACGGGCCACCATTGTCAAGGACCACTATGTCCTaGGCTGTGGAAAGGGCCTCA +
Preference number: 4 (lower is better)
Translates to: YTLNLEDHTEAGYGPPLSRTTMS*AVERAS
Trigger: TGAGGCCCTTTCCACAGCCCAGGACATAGTGGTCCT...TGACAATGGTGGCCCGTAGCCTGCCTCTGTGTGGTCTTCCAAATTCAGTGTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR CAA 72 bp CACAGATGTTCAGTAACCCCAGACTACACACTGAATTaGGAAGACCACACAGAGGCAGGCTACGGGCCACCA +
Preference number: 4 (lower is better)
Translates to: HRCSVTPDYTLN*EDHTEAGYGPP
Trigger: TGGTGGCCCGTAGCCTGCCTCTGTGTGGTCTTCCAAATTCAGTGTGTAGTCTGGGGTTACTGAACATCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp GTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGACTTGGGCCAGCGTCTaGGGGTCTGAGATGCCCAGA +
Preference number: 4 (lower is better)
Translates to: VDLCPITLPFTCGVYTFETWASV*GSEMPR
Trigger: TCTGGGCATCTCAGACCCTCAGACGCTGGCCCAAGT...CTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp CATTCACATGTGGTGTCTACACATTCGAGCTGTGTAGCACATGACAAGGCTTGGCCTGAAGGTCAGCAGTaGGCTGTGAGGCCAGTGACT +
Preference number: 4 (lower is better)
Translates to: HSHVVSTHSSCVAHDKAWPEGQQ*AVRPVT
Trigger: AGTCACTGGCCTCACAGCTCACTGCTGACCTTCAGG...CCAAGCCTTGTCATGTGCTACACAGCTCGAATGTGTAGACACCACATGTGAATG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp AAGGGAAGCAATGACAACAGGGCTGTGGGGGAGGATGGGATACATACGGAAGGGTGCTCAATGGCTGCTTaGATTCCCATCAGGTTCTCA +
Preference number: 4 (lower is better)
Translates to: KGSNDNRAVGEDGIHTEGCSMAA*IPIRFS
Trigger: TGAGAACCTGATGGGAATGCAAGCAGCCATTGAGCA...CCCTTCCGTATGTATCCCATCCTCCCCCACAGCCCTGTTGTCATTGCTTCCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp CAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTAGGTAGCCCACGTTaGCCTCAAGAACCTCATGGC +
Preference number: 4 (lower is better)
Translates to: QVEGNVDLCPITLPFTCGVGSPR*PQEPHG
Trigger: GCCATGAGGTTCTTGAGGGCAACGTGGGCTACCTAC...ACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp AGGACTGCAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACTCCTCCGACACAGCCTaGAAGCCAGCATTGAGCTTT +
Preference number: 4 (lower is better)
Translates to: RTAGGGQCRPVSYYSAIHSSDTA*KPALSF
Trigger: AAAGCTCAATGCTGGCTTGCAGGCTGTGTCGGAGGA...GTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTGCAGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp CATTCACATGTGGTGTCTACACATTCGAGCTGTGTAGCACATGACAAGGCTTGGTACCCCCTCAGGGCCTaGTGGAGTATCTCCTTGGCT +
Preference number: 4 (lower is better)
Translates to: HSHVVSTHSSCVAHDKAWYPLRA*WSISLA
Trigger: AGCCAAGGAGATACTCCAGCAGGCCCTGAGGGGGTA...CCAAGCCTTGTCATGTGCTACACAGCTCGAATGTGTAGACACCACATGTGAATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp TTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGCTGTGTAGCACATGACCCTATTCTCAGCTTCTaGAGGTCCAGGGCCCCACCC +
Preference number: 4 (lower is better)
Translates to: LLCHSHVVSTHSSCVAHDPILSF*RSRAPP
Trigger: GGGTGGGGCCCTGGACCTCCAGAAGCTGAGAATAGG...GTCATGTGCTACACAGCTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp GTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGTTGAGGAGGAGTCTCTaGGTCCGGTGGCCCTCACCA +
Preference number: 4 (lower is better)
Translates to: VDLCPITLPFTCGVYTFELRRSL*VRWPSP
Trigger: TGGTGAGGGCCACCGGACCCAGAGACTCCTCCTCAA...CTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp CCTGGTCTGCATAGAGTCTATATAGGGTCAGTTGAAGGGTGCCCCATGGACTCCTCTTGTCCAGCAGAATaGGAGGTGCCTCGTCAAAGA +
Preference number: 4 (lower is better)
Translates to: PGLHRVYIGSVEGCPMDSSCPAE*EVPRQR
Trigger: TCTTTGACGAGGCACCTCCCATTCTGCTGGACAAGA...GGAGTCCATGGGGCACCCTTCAACTGACCCTATATAGACTCTATGCAGACCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp GTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGCAGCGTCTGAGGGTCTaGGATGCCCAGAATCTCGTG +
Preference number: 4 (lower is better)
Translates to: VDLCPITLPFTCGVYTFEQRLRV*DAQNLV
Trigger: CACGAGATTCTGGGCATCTCAGACCCTCAGACGCTG...CTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp GTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGAGGTCCTGCATAGTGTaGGCAAAGGCCTCGGCTGCA +
Preference number: 4 (lower is better)
Translates to: VDLCPITLPFTCGVYTFERSCIV*AKASAA
Trigger: TGCAGCCGAGGCCTTTGCTCACACTATGCAGGACCT...CTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp TTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGCTGTGTAGCACATGACAGCCAAGGCCCCTTCTaGAGTCACCCTTGCATAGCG +
Preference number: 4 (lower is better)
Translates to: LLCHSHVVSTHSSCVAHDSQGPF*SHPCIA
Trigger: CGCTATGCAAGGGTGACTTCAGAAGGGGCCTTGGCT...GTCATGTGCTACACAGCTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp GAAAGTGCTACAAGCACTAAGCACGTCTTTCTTTTGCTTTCTGAAAAGGTGACTTTGTCACTTCACCGATaGCCAGGGCCCGGCCCAGCC +
Preference number: 4 (lower is better)
Translates to: ESATSTKHVFLLLSEKVTLSLHR*PGPGPA
Trigger: GGCTGGGCCGGGCCCTGGTCATCGGTGAAGTGACAA...AGTCACCTTTTCAGAAAGCAAAAGAAAGACGTGCTTAGTGCTTGTAGCACTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp TTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGCTGTGTAGCACATGACGTAGGCAATGTCCTCTaGGACTCCCCCAGTGTGTCC +
Preference number: 4 (lower is better)
Translates to: LLCHSHVVSTHSSCVAHDVGNVL*DSPSVS
Trigger: GGACACACTGGGGGAGTCGCAGAGGACATTGCCTAC...GTCATGTGCTACACAGCTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp AGGACTGCAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACGAGTATTTGCAGATCTaGCCCCAGCATCTCAGCCAA +
Preference number: 4 (lower is better)
Translates to: RTAGGGQCRPVSYYSAIHEYLQI*PQHLSQ
Trigger: TTGGCTGAGATGCTGGGGGCAGATCTGCAAATACTC...GTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTGCAGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp AGAGAGACTTTTTGGAGTAGTGGGGACCAGCAGATGAACCCTGGAGGATGTCTGATCCTCTGGAATGTGTaGTGTCTTCAGGTGTGGGTC +
Preference number: 4 (lower is better)
Translates to: RETFWSSGDQQMNPGGCLILWNV*CLQVWV
Trigger: GACCCACACCTGAAGACAGCACACATTCCAGAGGAT...CAGACATCCTCCAGGGTTCATCTGCTGGTCCCCACTACTCCAAAAAGTCTCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp GTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGATCCAGTACCAGGCTTaGCTGGAAGAGGTGCGTGGG +
Preference number: 4 (lower is better)
Translates to: VDLCPITLPFTCGVYTFEIQYQA*LEEVRG
Trigger: CCCACGCACCTCTTCCAGCCAAGCCTGGTACTGGAT...CTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp TACACACTGAATTTGGAAGACCACACAGAGGCAGGCTACGGGCCACCATTGTCATCACTCAAGGAACTCTaGACTCCAGCTGTCAGCACT +
Preference number: 4 (lower is better)
Translates to: YTLNLEDHTEAGYGPPLSSLKEL*TPAVST
Trigger: AGTGCTGACAGCTGGAGTCCAGAGTTCCTTGAGTGA...TGACAATGGTGGCCCGTAGCCTGCCTCTGTGTGGTCTTCCAAATTCAGTGTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp TCACGTGTGCCTTACTTTACATCCGTGGTTCAATTCCCTCTCCTGACAGAATTGTCTCTGTGGTGGTGTTaGAGGGCCGATCGTAGACGG +
Preference number: 4 (lower is better)
Translates to: SRVPYFTSVVQFPLLTELSLWWC*RADRRR
Trigger: CCGTCTACGATCGGCCCTCCAACACCACCACAGAGA...CAATTCTGTCAGGAGAGGGAATTGAACCACGGATGTAAAGTAAGGCACACGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp TTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGCTGTGTAGCACATGACATTGCAGGAGAGCTCTaGCCCGCTGTGCGATCTCTG +
Preference number: 4 (lower is better)
Translates to: LLCHSHVVSTHSSCVAHDIAGEL*PAVRSL
Trigger: CAGAGATCGCACAGCGGGCCAGAGCTCTCCTGCAAT...GTCATGTGCTACACAGCTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp AGGACTGCAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACTCTCTAGCTCAGCCATaGCGTCAAAACGCAAGTAGC +
Preference number: 4 (lower is better)
Translates to: RTAGGGQCRPVSYYSAIHSLAQP*RQNASS
Trigger: GCTACTTGCGTTTTGACGCCATGGCTGAGCTAGAGA...GTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTGCAGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
3UTR CAA 72 bp TTGGAAGACCACACAGAGGCAGGCTACGGGCCACCATaGTCATCCTGGAATATTCACAAGAGGACTGTGGAT +
Preference number: 4 (lower is better)
Translates to: LEDHTEAGYGPP*SSWNIHKRTVD
Trigger: ATCCACAGTCCTCTTGTGAATATTCCAGGATGACAATGGTGGCCCGTAGCCTGCCTCTGTGTGGTCTTCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp TACACACTGAATTTGGAAGACCACACAGAGGCAGGCTACGGGCCACCATTGTCAGGTGCAAGTAAGAGATaGCATAAGGGATCCCAGAGA +
Preference number: 4 (lower is better)
Translates to: YTLNLEDHTEAGYGPPLSGASKR*HKGSQR
Trigger: TCTCTGGGATCCCTTATGTCATCTCTTACTTGCACC...TGACAATGGTGGCCCGTAGCCTGCCTCTGTGTGGTCTTCCAAATTCAGTGTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp TTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGCTGTGTAGCACATGACTTCAGAGACCACAGCTaGGTAGTCCATGCTGGCCAG +
Preference number: 4 (lower is better)
Translates to: LLCHSHVVSTHSSCVAHDFRDHS*VVHAGQ
Trigger: CTGGCCAGCATGGACTACTCAGCTGTGGTCTCTGAA...GTCATGTGCTACACAGCTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp CAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTGGACCCCCAGGGTTATaGCGCAGGTCCATGATGAGG +
Preference number: 4 (lower is better)
Translates to: QCRPVSYYSAIHMWCLHIGPPGL*RRSMMR
Trigger: CCTCATCATGGACCTGCGTCATAACCCTGGGGGTCC...AATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp TTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGCTGTGTAGCACATGACTCCCGATGGCTGAAGTaGTCCTGGGTGATGTTGGTG +
Preference number: 4 (lower is better)
Translates to: LLCHSHVVSTHSSCVAHDSRWLK*SWVMLV
Trigger: CACCAACATCACCCAGGAGCACTTCAGCCATCGGGA...GTCATGTGCTACACAGCTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp CTGAGTACCAGAAACACACAGATGTTCAGTAACCCCAGACTACACACTGAATTTCCAAGTCCACAGCTGTaGGGTAGGCTCCTTGGGCCA +
Preference number: 4 (lower is better)
Translates to: LSTRNTQMFSNPRLHTEFPSPQL*GRLLGP
Trigger: TGGCCCAAGGAGCCTACCGCACAGCTGTGGACTTGG...AAATTCAGTGTGTAGTCTGGGGTTACTGAACATCTGTGTGTTTCTGGTACTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp AGAGAGACTTTTTGGAGTAGTGGGGACCAGCAGATGAACCCTGGAGGATGTCTGCAGCAGAATGGGAGGTaGCTCGTCAAAGAAGTAAGA +
Preference number: 4 (lower is better)
Translates to: RETFWSSGDQQMNPGGCLQQNGR*LVKEVR
Trigger: TCTTACTTCTTTGACGAGGCACCTCCCATTCTGCTG...CAGACATCCTCCAGGGTTCATCTGCTGGTCCCCACTACTCCAAAAAGTCTCTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp CAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGAACCCAGAGCAGTGTaGACAAAACCAGGACCCATT +
Preference number: 4 (lower is better)
Translates to: QVEGNVDLCPITLPFTCGEPRAV*TKPGPI
Trigger: AATGGGTCCTGGTTTTGTCCACACTGCTCTGGGTTC...ACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp AAATTAGTTTATAAGGTAGTGGGAACAAGTTGTATGAATTCTAGGGCACCAGCCGCTCGCCCACCACGATaGCGCGCCGCATCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: KLVYKVVGTSCMNSRAPAARPPR*RAASAS
Trigger: TGAAGCAGATGCGGCGCGCCATCGTGGTGGGCGAGC...GGCTGGTGCCCTAGAATTCATACAACTTGTTCCCACTACCTTATAAACTAATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp CAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTCCTCAGCCAGCACGATaGCATCAGGTACCACCCCAC +
Preference number: 4 (lower is better)
Translates to: QCRPVSYYSAIHMWCLHIPQPAR*HQVPPH
Trigger: GTGGGGTGGTACCTGATGCCATCGTGCTGGCTGAGG...AATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp GTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGCTATGTCCTGGGCTGTaGAAAGGGCCTCACTCATGG +
Preference number: 4 (lower is better)
Translates to: VDLCPITLPFTCGVYTFELCPGL*KGPHSW
Trigger: CCATGAGTGAGGCCCTTTCCACAGCCCAGGACATAG...CTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp AGGACTGCAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACGTCTTTGGCATCCTCTaGAATGTGTGCTGTCTTCAG +
Preference number: 4 (lower is better)
Translates to: RTAGGGQCRPVSYYSAIHVFGIL*NVCCLQ
Trigger: CTGAAGACAGCACACATTCCAGAGGATGCCAAAGAC...GTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTGCAGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp CAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTAGCCCAGGGACTGCATaGGGAAGGCAAACTCTTCGG +
Preference number: 4 (lower is better)
Translates to: QCRPVSYYSAIHMWCLHISPGTA*GRQTLR
Trigger: CCGAAGAGTTTGCCTTCCTCATGCAGTCCCTGGGCT...AATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp GATTTTTACTCTAGCATAGGCTTGTTCAGGTATTTCATGCATTTTGACCTAGTAATGCTGGCCAGGTGGTaGAGCAGGCCCGGCACTCGG +
Preference number: 4 (lower is better)
Translates to: DFYSSIGLFRYFMHFDLVMLARW*SRPGTR
Trigger: CCGAGTGCCGGGCCTGCTGCACCACCTGGCCAGCAT...TACTAGGTCAAAATGCATGAAATACCTGAACAAGCCTATGCTAGAGTAAAAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp TCACGTGTGCCTTACTTTACATCCGTGGTTCAATTCCCTCTCCTGACAGAATTGCATATAAGGGGCTGTTaGCCACCTGGTAGATGCCCA +
Preference number: 4 (lower is better)
Translates to: SRVPYFTSVVQFPLLTELHIRGC*PPGRCP
Trigger: TGGGCATCTACCAGGTGGGCAACAGCCCCTTATATG...CAATTCTGTCAGGAGAGGGAATTGAACCACGGATGTAAAGTAAGGCACACGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp CAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTCCTGCAAGCCAGCATTaGGCTTTGTCACCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: QCRPVSYYSAIHMWCLHIPASQH*ALSPGP
Trigger: AGGACCTGGTGACAAAGCTCAATGCTGGCTTGCAGG...AATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp TTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGCTGTGTAGCACATGACCATATCGTTCACCTGTaGGCTGAGTGTGGGTCCAAA +
Preference number: 4 (lower is better)
Translates to: LLCHSHVVSTHSSCVAHDHIVHL*AECGSK
Trigger: TTTGGACCCACACTCAGCTCACAGGTGAACGATATG...GTCATGTGCTACACAGCTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR GCA 90 bp GTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTCGAGTCTGAGGGTCTGAGATaGCCAGAATCTCGTGACTCT +
Preference number: 4 (lower is better)
Translates to: VDLCPITLPFTCGVYTFESEGLR*PESRDS
Trigger: AGAGTCACGAGATTCTGGGCATCTCAGACCCTCAGA...CTCGAATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp GATTTTTACTCTAGCATAGGCTTGTTCAGGTATTTCATGCATTTTGACCTAGTAGGGATCCCAGAGAAGTaGCCGCCAGAGCAGTGCCGG +
Preference number: 4 (lower is better)
Translates to: DFYSSIGLFRYFMHFDLVGIPEK*PPEQCR
Trigger: CCGGCACTGCTCTGGCGGCCACTTCTCTGGGATCCC...TACTAGGTCAAAATGCATGAAATACCTGAACAAGCCTATGCTAGAGTAAAAATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp CTGAGTACCAGAAACACACAGATGTTCAGTAACCCCAGACTACACACTGAATTTAGGTCCAGATCTCTGTaGTGGTGTTGGAGGGCCGAT +
Preference number: 4 (lower is better)
Translates to: LSTRNTQMFSNPRLHTEFRSRSL*WCWRAD
Trigger: ATCGGCCCTCCAACACCACCACAGAGATCTGGACCT...AAATTCAGTGTGTAGTCTGGGGTTACTGAACATCTGTGTGTTTCTGGTACTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp TCACGTGTGCCTTACTTTACATCCGTGGTTCAATTCCCTCTCCTGACAGAATTGCTAGCTGAGGCCCAATaGCCTTTACTGTCTCTAGCT +
Preference number: 4 (lower is better)
Translates to: SRVPYFTSVVQFPLLTELLAEAQ*PLLSLA
Trigger: AGCTAGAGACAGTAAAGGCCATTGGGCCTCAGCTAG...CAATTCTGTCAGGAGAGGGAATTGAACCACGGATGTAAAGTAAGGCACACGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp AAATTAGTTTATAAGGTAGTGGGAACAAGTTGTATGAATTCTAGGGCACCAGCCCTGCCTTCCCATGTCTaGCCACCTCCACCTAGAGGT +
Preference number: 4 (lower is better)
Translates to: KLVYKVVGTSCMNSRAPALPSHV*PPPPRG
Trigger: ACCTCTAGGTGGAGGTGGCCAGACATGGGAAGGCAG...GGCTGGTGCCCTAGAATTCATACAACTTGTTCCCACTACCTTATAAACTAATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp CATTCACATGTGGTGTCTACACATTCGAGCTGTGTAGCACATGACAAGGCTTGGAGCCAGGCCTCACCGTaGTTGTCAATAAAAGTAAGT +
Preference number: 4 (lower is better)
Translates to: HSHVVSTHSSCVAHDKAWSQASP*LSIKVS
Trigger: ACTTACTTTTATTGACAACCACGGTGAGGCCTGGCT...CCAAGCCTTGTCATGTGCTACACAGCTCGAATGTGTAGACACCACATGTGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp TCACGTGTGCCTTACTTTACATCCGTGGTTCAATTCCCTCTCCTGACAGAATTGCAGGAATTCGGTCTTTaGCATCCTCTGGAATGTGTG +
Preference number: 4 (lower is better)
Translates to: SRVPYFTSVVQFPLLTELQEFGL*HPLECV
Trigger: CACACATTCCAGAGGATGCCAAAGACCGAATTCCTG...CAATTCTGTCAGGAGAGGGAATTGAACCACGGATGTAAAGTAAGGCACACGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp GATTTTTACTCTAGCATAGGCTTGTTCAGGTATTTCATGCATTTTGACCTAGTAGCAGACCGCTTAGCTTaGCAGCCATCTTGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: DFYSSIGLFRYFMHFDLVADRLA*QPSWPP
Trigger: TGGGGGCCAAGATGGCTGCCAAGCTAAGCGGTCTGC...TACTAGGTCAAAATGCATGAAATACCTGAACAAGCCTATGCTAGAGTAAAAATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CCA 90 bp GATTTTTACTCTAGCATAGGCTTGTTCAGGTATTTCATGCATTTTGACCTAGTAAGTACCAGGCTTGGCTaGAAGAGGTGCGTGGGACCA +
Preference number: 4 (lower is better)
Translates to: DFYSSIGLFRYFMHFDLVSTRLG*KRCVGP
Trigger: TGGTCCCACGCACCTCTTCCAGCCAAGCCTGGTACT...TACTAGGTCAAAATGCATGAAATACCTGAACAAGCCTATGCTAGAGTAAAAATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR TCA 90 bp AAATTAGTTTATAAGGTAGTGGGAACAAGTTGTATGAATTCTAGGGCACCAGCCGGTAAGGGCCAATTCTaGAGAGACAACTACATTAGG +
Preference number: 4 (lower is better)
Translates to: KLVYKVVGTSCMNSRAPAGKGQF*RDNYIR
Trigger: CCTAATGTAGTTGTCTCTTCAGAATTGGCCCTTACC...GGCTGGTGCCCTAGAATTCATACAACTTGTTCCCACTACCTTATAAACTAATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp GCCAGGCCACCCTGGGGCGAGTCCAGCAGTGGCACCGTGCAGGTGTaGAGCAGGCTACCCGCGGTGATTTCGCCGACCAGTGTGGCCCAG +
Preference number: 5 (lower is better)
Translates to: ARPPWGESSSGTVQV*SRLPAVISPTSVAQ
Trigger: CTGGGCCACACTGGTCGGCGAAATCACCGCGGGTAGCCTGCTCCACACCTGCACGGTGCCACTGCTGGACTCGCCCCAGGGTGGCCTGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp TACCGGTACTGTGAGCGCCAGGCCACCCTGGGGCGAGTCCAGCAGTaGCACCGTGCAGGTGTGGAGCAGGCTACCCGCGGTGATTTCGCC +
Preference number: 5 (lower is better)
Translates to: YRYCERQATLGRVQQ*HRAGVEQATRGDFA
Trigger: GGCGAAATCACCGCGGGTAGCCTGCTCCACACCTGCACGGTGCCACTGCTGGACTCGCCCCAGGGTGGCCTGGCGCTCACAGTACCGGTA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 90 bp CTCGGGGGTGGCTGCTGGGGACTCATTAGGCCCAGTCTCAGGTCTTaGGGAGGAGTCTCTGGGTCCGGTGGCCCTCACCAGGAGCCTGGG +
Preference number: 5 (lower is better)
Translates to: LGGGCWGLIRPSLRS*GGVSGSGGPHQEPG
Trigger: CCCAGGCTCCTGGTGAGGGCCACCGGACCCAGAGACTCCTCCTCAAGACCTGAGACTGGGCCTAATGAGTCCCCAGCAGCCACCCCCGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp TCTGGAGGTCCAGGGCCCCACCCTCCGTCCGCTCGCCCACCACGATaGCGCGCCGCATCTGCTTCAGGATGTAGGCAATGTCCTCTGCGA +
Preference number: 5 (lower is better)
Translates to: SGGPGPHPPSARPPR*RAASASGCRQCPLR
Trigger: TCGCAGAGGACATTGCCTACATCCTGAAGCAGATGCGGCGCGCCATCGTGGTGGGCGAGCGGACGGAGGGTGGGGCCCTGGACCTCCAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 90 bp GTGCGATCTCTGGCCGGGCATAGTGAGCCTCCAGCAGGCGACCCGTaGCCTCTACCAAGGCGCCCAGACTGCGATGGAAGTCCAGCACCT +
Preference number: 5 (lower is better)
Translates to: VRSLAGHSEPPAGDP*PLPRRPDCDGSPAP
Trigger: AGGTGCTGGACTTCCATCGCAGTCTGGGCGCCTTGGTAGAGGGCACGGGTCGCCTGCTGGAGGCTCACTATGCCCGGCCAGAGATCGCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 90 bp GAGCCTCCAGCAGGCGACCCGTGCCCTCTACCAAGGCGCCCAGACTaGGATGGAAGTCCAGCACCTCCTGAGCTCTCTCTAAGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: EPPAGDPCPLPRRPD*DGSPAPPELSLRPP
Trigger: AGGAGGCCTTAGAGAGAGCTCAGGAGGTGCTGGACTTCCATCGCAGTCTGGGCGCCTTGGTAGAGGGCACGGGTCGCCTGCTGGAGGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp GGCCAACTTAGATTGCAGGAGAGCTCTGGCCCGCTGTGCGATCTCTaGCCGGGCATAGTGAGCCTCCAGCAGGCGACCCGTGCCCTCTAC +
Preference number: 5 (lower is better)
Translates to: GQLRLQESSGPLCDL*PGIVSLQQATRALY
Trigger: GTAGAGGGCACGGGTCGCCTGCTGGAGGCTCACTATGCCCGGCCAGAGATCGCACAGCGGGCCAGAGCTCTCCTGCAATCTAAGTTGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 90 bp GGTCCGGTGGCCCTCACCAGGAGCCTGGGATCCTCCGACACAGCCTaGAAGCCAGCATTGAGCTTTGTCACCAGGTCCTCTTCAGAGACC +
Preference number: 5 (lower is better)
Translates to: GPVALTRSLGSSDTA*KPALSFVTRSSSET
Trigger: GGTCTCTGAAGAGGACCTGGTGACAAAGCTCAATGCTGGCTTGCAGGCTGTGTCGGAGGATCCCAGGCTCCTGGTGAGGGCCACCGGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp ACAGGCACTGTGAGGAAGAAGTTGGACTGGCCTATTCTCAGCTTCTaGAGGTCCAGGGCCCCACCCTCCGTCCGCTCGCCCACCACGATG +
Preference number: 5 (lower is better)
Translates to: TGTVRKKLDWPILSF*RSRAPPSVRSPTTM
Trigger: CATCGTGGTGGGCGAGCGGACGGAGGGTGGGGCCCTGGACCTCCAGAAGCTGAGAATAGGCCAGTCCAACTTCTTCCTCACAGTGCCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp GGTCCCAGGGACCTGGACACAGGCACTGTGAGGAAGAAGTTGGACTaGCCTATTCTCAGCTTCTGGAGGTCCAGGGCCCCACCCTCCGTC +
Preference number: 5 (lower is better)
Translates to: GPRDLDTGTVRKKLD*PILSFWRSRAPPSV
Trigger: GACGGAGGGTGGGGCCCTGGACCTCCAGAAGCTGAGAATAGGCCAGTCCAACTTCTTCCTCACAGTGCCTGTGTCCAGGTCCCTGGGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 90 bp CGCCAGAGCAGTGCCGGAGATCTAGCACCAAGGAGGAGGTGCTCATaGGCTGCCTCCACACATGGCTCACTAAGAACTCCCCCAGCTCGC +
Preference number: 5 (lower is better)
Translates to: RQSSAGDLAPRRRCS*AASTHGSLRTPPAR
Trigger: GCGAGCTGGGGGAGTTCTTAGTGAGCCATGTGTGGAGGCAGCTCATGAGCACCTCCTCCTTGGTGCTAGATCTCCGGCACTGCTCTGGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 90 bp GCCAGCATTGAGCTTTGTCACCAGGTCCTCTTCAGAGACCACAGCTaGGTAGTCCATGCTGGCCAGGTGGTGCAGCAGGCCCGGCACTCG +
Preference number: 5 (lower is better)
Translates to: ASIELCHQVLFRDHS*VVHAGQVVQQARHS
Trigger: CGAGTGCCGGGCCTGCTGCACCACCTGGCCAGCATGGACTACTCAGCTGTGGTCTCTGAAGAGGACCTGGTGACAAAGCTCAATGCTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 90 bp CCACTATGTCCTGGGCTGTGGAAAGGGCCTCACTCATGGGCACAGTaGTGTCAGGTTCCACACCAGCCAAGTCCCAGGCCTCACCGGTGC +
Preference number: 5 (lower is better)
Translates to: PLCPGLWKGPHSWAQ*CQVPHQPSPRPHRC
Trigger: GCACCGGTGAGGCCTGGGACTTGGCTGGTGTGGAACCTGACATCACTGTGCCCATGAGTGAGGCCCTTTCCACAGCCCAGGACATAGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 90 bp CACGATGGCGCGCCGCATCTGCTTCAGGATGTAGGCAATGTCCTCTaGGACTCCCCCAGTGTGTCCGCTGGTGAGGACCACCACATCCTT +
Preference number: 5 (lower is better)
Translates to: HDGAPHLLQDVGNVL*DSPSVSAGEDHHIL
Trigger: AAGGATGTGGTGGTCCTCACCAGCGGACACACTGGGGGAGTCGCAGAGGACATTGCCTACATCCTGAAGCAGATGCGGCGCGCCATCGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 90 bp GCACAGCGGCGTCTGCAAATCTATCAAAGCGCAGGTAGCCCACATTaGCCGGCAGCACGGACACCTGAAACACAGAGTCCACCAGGGCCC +
Preference number: 5 (lower is better)
Translates to: AQRRLQIYQSAGSPH*PAARTPETQSPPGP
Trigger: GGGCCCTGGTGGACTCTGTGTTTCAGGTGTCCGTGCTGCCGGGCAATGTGGGCTACCTGCGCTTTGATAGATTTGCAGACGCCGCTGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp GGATCTTGGCCATATCCAGTACCAGGCTTGGCTGGAAGAGGTGCGTaGGACCAGCCGGAACCCAGAGCAGTGTGGACAAAACCAGGACCC +
Preference number: 5 (lower is better)
Translates to: GSWPYPVPGLAGRGA*DQPEPRAVWTKPGP
Trigger: GGGTCCTGGTTTTGTCCACACTGCTCTGGGTTCCGGCTGGTCCCACGCACCTCTTCCAGCCAAGCCTGGTACTGGATATGGCCAAGATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp GGAAGGGCTCCTAACCTCAGAAGCCATGAGCTGAAGGTCCCCACTGAGTACCAGCTCGCTCAGTACCTCTaGGCCAGGGAGGTCGTCCAC +
Preference number: 5 (lower is better)
Translates to: GRAPNLRSHELKVPTEYQLAQYL*AREVVH
Trigger: GTGGACGACCTCCCTGGCCAAGAGGTACTGAGCGAG...CTGGTACTCAGTGGGGACCTTCAGCTCATGGCTTCTGAGGTTAGGAGCCCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 90 bp GGATGTAGGCAATGTCCTCTGCGACTCCCCCAGTGTGTCCGCTGGTaGGGACCACCACATCCTTGTCAGCACTGTATCTCTCCCCGAGGA +
Preference number: 5 (lower is better)
Translates to: GCRQCPLRLPQCVRW*GPPHPCQHCISPRG
Trigger: TCCTCGGGGAGAGATACAGTGCTGACAAGGATGTGGTGGTCCTCACCAGCGGACACACTGGGGGAGTCGCAGAGGACATTGCCTACATCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 90 bp AGCGCAGCTGTGTCCACCAGCCTCTGCCACACCAGCTGTACTAGCTaGGGCCCAATGGCCTTTACTGTCTCTAGCTCAGCCATGGCGTCA +
Preference number: 5 (lower is better)
Translates to: SAAVSTSLCHTSCTS*GPMAFTVSSSAMAS
Trigger: TGACGCCATGGCTGAGCTAGAGACAGTAAAGGCCATTGGGCCTCAGCTAGTACAGCTGGTGTGGCAGAGGCTGGTGGACACAGCTGCGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 90 bp AGGAGGATCTTGGCCATATCCAGTACCAGGCTTGGCTGGAAGAGGTaGGTGGGACCAGCCGGAACCCAGAGCAGTGTGGACAAAACCAGG +
Preference number: 5 (lower is better)
Translates to: RRILAISSTRLGWKR*VGPAGTQSSVDKTR
Trigger: CCTGGTTTTGTCCACACTGCTCTGGGTTCCGGCTGGTCCCACGCACCTCTTCCAGCCAAGCCTGGTACTGGATATGGCCAAGATCCTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 90 bp GTACCTCTTGGCCAGGGAGGTCGTCCACTCGTAGGTAGCCCACGTTaGCCTCAAGAACCTCATGGCGGATGTTCCTCTGTATCTGGGCCA +
Preference number: 5 (lower is better)
Translates to: VPLGQGGRPLVGSPR*PQEPHGGCSSVSGP
Trigger: TGGCCCAGATACAGAGGAACATCCGCCATGAGGTTCTTGAGGGCAACGTGGGCTACCTACGAGTGGACGACCTCCCTGGCCAAGAGGTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp CTGGGGAGCCTCGAGGGTACTGGGCTCGTAAGAGATGAAGAGTCGTaGGTCACTCAAGGAACTCTGGACTCCAGCTGTCAGCACTTGGGC +
Preference number: 5 (lower is better)
Translates to: LGSLEGTGLVRDEES*VTQGTLDSSCQHLG
Trigger: GCCCAAGTGCTGACAGCTGGAGTCCAGAGTTCCTTGAGTGACCCACGACTCTTCATCTCTTACGAGCCCAGTACCCTCGAGGCTCCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 90 bp ACTCTGGACTCCAGCTGTCAGCACTTGGGCCAGCGTCTGAGGGTCTaGGATGCCCAGAATCTCGTGACTCTTCATCGCCTGCTCAATGGC +
Preference number: 5 (lower is better)
Translates to: TLDSSCQHLGQRLRV*DAQNLVTLHRLLNG
Trigger: GCCATTGAGCAGGCGATGAAGAGTCACGAGATTCTGGGCATCTCAGACCCTCAGACGCTGGCCCAAGTGCTGACAGCTGGAGTCCAGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 90 bp GGACTCCAGCTGTCAGCACTTGGGCCAGCGTCTGAGGGTCTGAGATaGCCAGAATCTCGTGACTCTTCATCGCCTGCTCAATGGCTGCTT +
Preference number: 5 (lower is better)
Translates to: GLQLSALGPASEGLR*PESRDSSSPAQWLL
Trigger: AAGCAGCCATTGAGCAGGCGATGAAGAGTCACGAGATTCTGGGCATCTCAGACCCTCAGACGCTGGCCCAAGTGCTGACAGCTGGAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp GCAGTAGTTATCCAGGAGGATCTTGGCCATATCCAGTACCAGGCTTaGCTGGAAGAGGTGCGTGGGACCAGCCGGAACCCAGAGCAGTGT +
Preference number: 5 (lower is better)
Translates to: AVVIQEDLGHIQYQA*LEEVRGTSRNPEQC
Trigger: ACACTGCTCTGGGTTCCGGCTGGTCCCACGCACCTCTTCCAGCCAAGCCTGGTACTGGATATGGCCAAGATCCTCCTGGATAACTACTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp CCCACGTTGCCCTCAAGAACCTCATGGCGGATGTTCCTCTGTATCTaGGCCAGCAGTTCTTCTCGGGTGAGGTTGGTGAGCACTGGTGCT +
Preference number: 5 (lower is better)
Translates to: PTLPSRTSWRMFLCI*ASSSSRVRLVSTGA
Trigger: AGCACCAGTGCTCACCAACCTCACCCGAGAAGAACTGCTGGCCCAGATACAGAGGAACATCCGCCATGAGGTTCTTGAGGGCAACGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp GTACTAGCTGAGGCCCAATGGCCTTTACTGTCTCTAGCTCAGCCATaGCGTCAAAACGCAAGTAGCCGAGCTGGCCGGGTAGCACATCCG +
Preference number: 5 (lower is better)
Translates to: VLAEAQWPLLSLAQP*RQNASSRAGRVAHP
Trigger: CGGATGTGCTACCCGGCCAGCTCGGCTACTTGCGTTTTGACGCCATGGCTGAGCTAGAGACAGTAAAGGCCATTGGGCCTCAGCTAGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp GTCTGCAGAACAGTGGGCACCTTAGCACGCAGGACCACTATGTCCTaGGCTGTGGAAAGGGCCTCACTCATGGGCACAGTGATGTCAGGT +
Preference number: 5 (lower is better)
Translates to: VCRTVGTLARRTTMS*AVERASLMGTVMSG
Trigger: ACCTGACATCACTGTGCCCATGAGTGAGGCCCTTTCCACAGCCCAGGACATAGTGGTCCTGCGTGCTAAGGTGCCCACTGTTCTGCAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp GATGGTGATGTAGAGATGGGTGTCATCCACGTGGTAGGTCTGCGGTaGTTGGCAACCTCCACTTGTCACTTCACCGATGACCAGGGCCCG +
Preference number: 5 (lower is better)
Translates to: DGDVEMGVIHVVGLR*LATSTCHFTDDQGP
Trigger: CGGGCCCTGGTCATCGGTGAAGTGACAAGTGGAGGTTGCCAACCACCGCAGACCTACCACGTGGATGACACCCATCTCTACATCACCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp AGATCTAGCACCAAGGAGGAGGTGCTCATGAGCTGCCTCCACACATaGCTCACTAAGAACTCCCCCAGCTCGCTCAGTACCTCTTGGCCA +
Preference number: 5 (lower is better)
Translates to: RSSTKEEVLMSCLHT*LTKNSPSSLSTSWP
Trigger: TGGCCAAGAGGTACTGAGCGAGCTGGGGGAGTTCTTAGTGAGCCATGTGTGGAGGCAGCTCATGAGCACCTCCTCCTTGGTGCTAGATCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp TACACACTGAATTTGGAAGACCACACAGAGGCAGGCTACGGGCCACCATTGTCATGCAGACCGCTTAGCTaGGCAGCCATCTTGGCCCCC +
Preference number: 5 (lower is better)
Translates to: YTLNLEDHTEAGYGPPLSCRPLS*AAILAP
Trigger: GGGGGCCAAGATGGCTGCCAAGCTAAGCGGTCTGCA...TGACAATGGTGGCCCGTAGCCTGCCTCTGTGTGGTCTTCCAAATTCAGTGTGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 90 bp AGGATGGCTACGCTCTTCTTGGAGCCATATCGTTCACCTGTGAGCTaGGTGTGGGTCCAAAGTTCGCTGACCGAGTCATTGGGCCGGTTG +
Preference number: 5 (lower is better)
Translates to: RMATLFLEPYRSPVS*VWVQSSLTESLGRL
Trigger: CAACCGGCCCAATGACTCGGTCAGCGAACTTTGGACCCACACTCAGCTCACAGGTGAACGATATGGCTCCAAGAAGAGCGTAGCCATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 90 bp CAGGGCCTGCTGGAGTATCTCCTTGGCTCTGGTAAGGGCCAATTCTaGAGAGACAACTACATTAGGTGTCACGCCCACCCCTTCCCAGGA +
Preference number: 5 (lower is better)
Translates to: QGLLEYLLGSGKGQF*RDNYIRCHAHPFPG
Trigger: TCCTGGGAAGGGGTGGGCGTGACACCTAATGTAGTTGTCTCTTCAGAATTGGCCCTTACCAGAGCCAAGGAGATACTCCAGCAGGCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp TGTCCACCAGCCTCTGCCACACCAGCTGTACTAGCTGAGGCCCAATaGCCTTTACTGTCTCTAGCTCAGCCATGGCGTCAAAACGCAAGT +
Preference number: 5 (lower is better)
Translates to: CPPASATPAVLAEAQ*PLLSLAQPWRQNAS
Trigger: ACTTGCGTTTTGACGCCATGGCTGAGCTAGAGACAGTAAAGGCCATTGGGCCTCAGCTAGTACAGCTGGTGTGGCAGAGGCTGGTGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp TTCCCATCAGGTTCTCAGGGAAGCAGTAGTTATCCAGGAGGATCTTaGCCATATCCAGTACCAGGCTTGGCTGGAAGAGGTGCGTGGGAC +
Preference number: 5 (lower is better)
Translates to: FPSGSQGSSSYPGGS*PYPVPGLAGRGAWD
Trigger: GTCCCACGCACCTCTTCCAGCCAAGCCTGGTACTGGATATGGCCAAGATCCTCCTGGATAACTACTGCTTCCCTGAGAACCTGATGGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp ATCCGTGGTTCAATTCCCTCTCCTGACAGAATTGCTCTTGGAGACAGTATGGGGGCCCAGTCTCAGGTCTaGAGGAGGAGTCTCTGGGTC +
Preference number: 5 (lower is better)
Translates to: IRGSIPSPDRIALGDSMGAQSQV*RRSLWV
Trigger: GACCCAGAGACTCCTCCTCAAGACCTGAGACTGGGC...CCCCATACTGTCTCCAAGAGCAATTCTGTCAGGAGAGGGAATTGAACCACGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp AATTCGGTCTTTGGCATCCTCTGGAATGTGTGCTGTCTTCAGGTGTaGGTCCCCAGAGAGTATTTGCAGATCTGCCCCCAGCATCTCAGC +
Preference number: 5 (lower is better)
Translates to: NSVFGILWNVCCLQV*VPREYLQICPQHLS
Trigger: GCTGAGATGCTGGGGGCAGATCTGCAAATACTCTCTGGGGACCCACACCTGAAGACAGCACACATTCCAGAGGATGCCAAAGACCGAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp CAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTAGCTTGGCAGCCATCTaGGCCCCCAATTCAGGGGAT +
Preference number: 5 (lower is better)
Translates to: QVEGNVDLCPITLPFTCGSLAAI*APNSGD
Trigger: ATCCCCTGAATTGGGGGCCAAGATGGCTGCCAAGCT...ACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 90 bp AGGCACGATTCCAGGAATTCGGTCTTTGGCATCCTCTGGAATGTGTaGTGTCTTCAGGTGTGGGTCCCCAGAGAGTATTTGCAGATCTGC +
Preference number: 5 (lower is better)
Translates to: RHDSRNSVFGILWNV*CLQVWVPREYLQIC
Trigger: GCAGATCTGCAAATACTCTCTGGGGACCCACACCTGAAGACAGCACACATTCCAGAGGATGCCAAAGACCGAATTCCTGGAATCGTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp CTGAGTACCAGAAACACACAGATGTTCAGTAACCCCAGACTACACACTGAATTTGGTGAGCACTGGTGCTaGCTGGGGAGCCTCGAGGGT +
Preference number: 5 (lower is better)
Translates to: LSTRNTQMFSNPRLHTEFGEHWC*LGSLEG
Trigger: ACCCTCGAGGCTCCCCAGCAAGCACCAGTGCTCACC...AAATTCAGTGTGTAGTCTGGGGTTACTGAACATCTGTGTGTTTCTGGTACTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp GGGAGGTGGGAAGGGCAGGGATTCCTGGAATTTAAGTGCTTAAGCCCTGTAGAGACTGTGAGGAAGAAGTaGGACTGGCCTATTCTCAGC +
Preference number: 5 (lower is better)
Translates to: GRWEGQGFLEFKCLSPVETVRKK*DWPILS
Trigger: GCTGAGAATAGGCCAGTCCAACTTCTTCCTCACAGT...CTCTACAGGGCTTAAGCACTTAAATTCCAGGAATCCCTGCCCTTCCCACCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp ATCCGTGGTTCAATTCCCTCTCCTGACAGAATTGCTCTTGGAGACAGTATGGGGCTTCTGAAGTCACCCTaGCATAGCGGCTCTGCAGAC +
Preference number: 5 (lower is better)
Translates to: IRGSIPSPDRIALGDSMGLLKSP*HSGSAD
Trigger: GTCTGCAGAGCCGCTATGCAAGGGTGACTTCAGAAG...CCCCATACTGTCTCCAAGAGCAATTCTGTCAGGAGAGGGAATTGAACCACGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp GGTCTGAGATGCCCAGAATCTCGTGACTCTTCATCGCCTGCTCAATaGCTGCTTGCATTCCCATCAGGTTCTCAGGGAAGCAGTAGTTAT +
Preference number: 5 (lower is better)
Translates to: GLRCPESRDSSSPAQ*LLAFPSGSQGSSSY
Trigger: ATAACTACTGCTTCCCTGAGAACCTGATGGGAATGCAAGCAGCCATTGAGCAGGCGATGAAGAGTCACGAGATTCTGGGCATCTCAGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp TGTGGGGCTGTGTTATCTTTGGAGAGCTTTGCCACTTTATTAGGCCCTGAGCAGAGGACCACCACATCCTaGTCAGCACTGTATCTCTCC +
Preference number: 5 (lower is better)
Translates to: CGAVLSLESFATLLGPEQRTTTS*SALYLS
Trigger: GGAGAGATACAGTGCTGACAAGGATGTGGTGGTCCT...CTGCTCAGGGCCTAATAAAGTGGCAAAGCTCTCCAAAGATAACACAGCCCCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp CAGGTGGAGGGCAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTTGCTGGAGTATCTCCTaGGCTCTGGTAAGGGCCAAT +
Preference number: 5 (lower is better)
Translates to: QVEGNVDLCPITLPFTCGCWSIS*ALVRAN
Trigger: ATTGGCCCTTACCAGAGCCAAGGAGATACTCCAGCA...ACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTGCCCTCCACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 90 bp AATCTGCATAGGCACGATTCCAGGAATTCGGTCTTTGGCATCCTCTaGAATGTGTGCTGTCTTCAGGTGTGGGTCCCCAGAGAGTATTTG +
Preference number: 5 (lower is better)
Translates to: NLHRHDSRNSVFGIL*NVCCLQVWVPREYL
Trigger: CAAATACTCTCTGGGGACCCACACCTGAAGACAGCACACATTCCAGAGGATGCCAAAGACCGAATTCCTGGAATCGTGCCTATGCAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp CTGAGTACCAGAAACACACAGATGTTCAGTAACCCCAGACTACACACTGAATTTGTCCCCAGAGAGTATTaGCAGATCTGCCCCCAGCAT +
Preference number: 5 (lower is better)
Translates to: LSTRNTQMFSNPRLHTEFVPREY*QICPQH
Trigger: ATGCTGGGGGCAGATCTGCAAATACTCTCTGGGGAC...AAATTCAGTGTGTAGTCTGGGGTTACTGAACATCTGTGTGTTTCTGGTACTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp AAATTAGTTTATAAGGTAGTGGGAACAAGTTGTATGAATTCTAGGGCACCAGCCTATCCAGTACCAGGCTaGGCTGGAAGAGGTGCGTGG +
Preference number: 5 (lower is better)
Translates to: KLVYKVVGTSCMNSRAPAYPVPG*AGRGAW
Trigger: CCACGCACCTCTTCCAGCCAAGCCTGGTACTGGATA...GGCTGGTGCCCTAGAATTCATACAACTTGTTCCCACTACCTTATAAACTAATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp GATTTTTACTCTAGCATAGGCTTGTTCAGGTATTTCATGCATTTTGACCTAGTATCCAGCTGTCAGCACTaGGGCCAGCGTCTGAGGGTC +
Preference number: 5 (lower is better)
Translates to: DFYSSIGLFRYFMHFDLVSSCQH*GQRLRV
Trigger: GACCCTCAGACGCTGGCCCAAGTGCTGACAGCTGGA...TACTAGGTCAAAATGCATGAAATACCTGAACAAGCCTATGCTAGAGTAAAAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp CAATGTAGACCTGTGTCCTATTACTCTGCCATTCACATGTGGTGTCTACACATTTTATCCAGGAGGATCTaGGCCATATCCAGTACCAGG +
Preference number: 5 (lower is better)
Translates to: QCRPVSYYSAIHMWCLHILSRRI*AISSTR
Trigger: CCTGGTACTGGATATGGCCAAGATCCTCCTGGATAA...AATGTGTAGACACCACATGTGAATGGCAGAGTAATAGGACACAGGTCTACATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp AAATTAGTTTATAAGGTAGTGGGAACAAGTTGTATGAATTCTAGGGCACCAGCCCTGCTCAATGGCTGCTaGCATTCCCATCAGGTTCTC +
Preference number: 5 (lower is better)
Translates to: KLVYKVVGTSCMNSRAPALLNGC*HSHQVL
Trigger: GAGAACCTGATGGGAATGCAAGCAGCCATTGAGCAG...GGCTGGTGCCCTAGAATTCATACAACTTGTTCCCACTACCTTATAAACTAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp AAATTAGTTTATAAGGTAGTGGGAACAAGTTGTATGAATTCTAGGGCACCAGCCCAGGCCTCACCGTGGTaGTCAATAAAAGTAAGTACC +
Preference number: 5 (lower is better)
Translates to: KLVYKVVGTSCMNSRAPAQASPW*SIKVST
Trigger: GGTACTTACTTTTATTGACAACCACGGTGAGGCCTG...GGCTGGTGCCCTAGAATTCATACAACTTGTTCCCACTACCTTATAAACTAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS-3UTR CAA 90 bp GATTTTTACTCTAGCATAGGCTTGTTCAGGTATTTCATGCATTTTGACCTAGTAGTGTGGAAGGAAAACTaGATCAGGTCTTCAAAGACT +
Preference number: 5 (lower is better)
Translates to: DFYSSIGLFRYFMHFDLVVWKEN*IRSSKT
Trigger: AGTCTTTGAAGACCTGATCAAGTTTTCCTTCCACAC...TACTAGGTCAAAATGCATGAAATACCTGAACAAGCCTATGCTAGAGTAAAAATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp TGTGAGCGCCAGGCCACCCTGGGGCGAGTCCAGCAGTaGCACCGTGCAGGTGTGGAGCAGGCTACCCGCGGT +
Preference number: 6 (lower is better)
Translates to: CERQATLGRVQQ*HRAGVEQATRG
Trigger: ACCGCGGGTAGCCTGCTCCACACCTGCACGGTGCCACTGCTGGACTCGCCCCAGGGTGGCCTGGCGCTCACA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp CCAGGGCCCCACCCTCCGTCCGCTCGCCCACCACGATaGCGCGCCGCATCTGCTTCAGGATGTAGGCAATGT +
Preference number: 6 (lower is better)
Translates to: PGPHPPSARPPR*RAASASGCRQC
Trigger: ACATTGCCTACATCCTGAAGCAGATGCGGCGCGCCATCGTGGTGGGCGAGCGGACGGAGGGTGGGGCCCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp GTCCTGGAGGGCTTCCTGAAGTCGGAGGACAACCCCTaGCAGGGCACGACGCAGGGTGAGGATGGCCAGGGC +
Preference number: 6 (lower is better)
Translates to: VLEGFLKSEDNP*QGTTQGEDGQG
Trigger: GCCCTGGCCATCCTCACCCTGCGTCGTGCCCTGCCAGGGGTTGTCCTCCGACTTCAGGAAGCCCTCCAGGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp CCCTGGGGCGAGTCCAGCAGTGGCACCGTGCAGGTGTaGAGCAGGCTACCCGCGGTGATTTCGCCGACCAGT +
Preference number: 6 (lower is better)
Translates to: PWGESSSGTVQV*SRLPAVISPTS
Trigger: ACTGGTCGGCGAAATCACCGCGGGTAGCCTGCTCCACACCTGCACGGTGCCACTGCTGGACTCGCCCCAGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp CTGGCCGGGCATAGTGAGCCTCCAGCAGGCGACCCGTaGCCTCTACCAAGGCGCCCAGACTGCGATGGAAGT +
Preference number: 6 (lower is better)
Translates to: LAGHSEPPAGDP*PLPRRPDCDGS
Trigger: ACTTCCATCGCAGTCTGGGCGCCTTGGTAGAGGGCACGGGTCGCCTGCTGGAGGCTCACTATGCCCGGCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp GCTCTGCAGGGGTCCCCACACAAGGCAGCACGCCACTaGCTTCCCATGTCTGGCCACCTCCACCTAGAGGTC +
Preference number: 6 (lower is better)
Translates to: ALQGSPHKAARH*LPMSGHLHLEV
Trigger: GACCTCTAGGTGGAGGTGGCCAGACATGGGAAGGCAGTGGCGTGCTGCCTTGTGTGGGGACCCCTGCAGAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp CCCACACAAGGCAGCACGCCACTGCCTTCCCATGTCTaGCCACCTCCACCTAGAGGTCCCAGGGACCTGGAC +
Preference number: 6 (lower is better)
Translates to: PTQGSTPLPSHV*PPPPRGPRDLD
Trigger: GTCCAGGTCCCTGGGACCTCTAGGTGGAGGTGGCCAGACATGGGAAGGCAGTGGCGTGCTGCCTTGTGTGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp AGATTGCAGGAGAGCTCTGGCCCGCTGTGCGATCTCTaGCCGGGCATAGTGAGCCTCCAGCAGGCGACCCGT +
Preference number: 6 (lower is better)
Translates to: RLQESSGPLCDL*PGIVSLQQATR
Trigger: ACGGGTCGCCTGCTGGAGGCTCACTATGCCCGGCCAGAGATCGCACAGCGGGCCAGAGCTCTCCTGCAATCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp GGCCAGCAGTTCTTCTCGGGTGAGGTTGGTGAGCACTaGTGCTTGCTGGGGAGCCTCGAGGGTACTGGGCTC +
Preference number: 6 (lower is better)
Translates to: GQQFFSGEVGEH*CLLGSLEGTGL
Trigger: GAGCCCAGTACCCTCGAGGCTCCCCAGCAAGCACCAGTGCTCACCAACCTCACCCGAGAAGAACTGCTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp CCCCGAGGACCTCGGGCAAGGTCCAGATCTCTGTGGTaGTGTTGGAGGGCCGATCGTAGACGGTGTCCACGT +
Preference number: 6 (lower is better)
Translates to: PRGPRARSRSLW*CWRADRRRCPR
Trigger: ACGTGGACACCGTCTACGATCGGCCCTCCAACACCACCACAGAGATCTGGACCTTGCCCGAGGTCCTCGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp GTGAGGAAGAAGTTGGACTGGCCTATTCTCAGCTTCTaGAGGTCCAGGGCCCCACCCTCCGTCCGCTCGCCC +
Preference number: 6 (lower is better)
Translates to: VRKKLDWPILSF*RSRAPPSVRSP
Trigger: GGGCGAGCGGACGGAGGGTGGGGCCCTGGACCTCCAGAAGCTGAGAATAGGCCAGTCCAACTTCTTCCTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp GGTCCTCTTCAGAGACCACAGCTGAGTAGTCCATGCTaGCCAGGTGGTGCAGCAGGCCCGGCACTCGGTCCA +
Preference number: 6 (lower is better)
Translates to: GPLQRPQLSSPC*PGGAAGPALGP
Trigger: TGGACCGAGTGCCGGGCCTGCTGCACCACCTGGCCAGCATGGACTACTCAGCTGTGGTCTCTGAAGAGGACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp CAGTCTCAGGTCTTGAGGAGGAGTCTCTGGGTCCGGTaGCCCTCACCAGGAGCCTGGGATCCTCCGACACAG +
Preference number: 6 (lower is better)
Translates to: QSQVLRRSLWVR*PSPGAWDPPTQ
Trigger: CTGTGTCGGAGGATCCCAGGCTCCTGGTGAGGGCCACCGGACCCAGAGACTCCTCCTCAAGACCTGAGACTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CAA 72 bp CCCCCAGTGTGTCCGCTGGTGAGGACCACCACATCCTaGTCAGCACTGTATCTCTCCCCGAGGACCTCGGGC +
Preference number: 6 (lower is better)
Translates to: PPVCPLVRTTTS*SALYLSPRTSG
Trigger: GCCCGAGGTCCTCGGGGAGAGATACAGTGCTGACAAGGATGTGGTGGTCCTCACCAGCGGACACACTGGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CAA 90 bp TCTGCGACTCCCCCAGTGTGTCCGCTGGTGAGGACCACCACATCCTaGTCAGCACTGTATCTCTCCCCGAGGACCTCGGGCAAGGTCCAG +
Preference number: 6 (lower is better)
Translates to: SATPPVCPLVRTTTS*SALYLSPRTSGKVQ
Trigger: CTGGACCTTGCCCGAGGTCCTCGGGGAGAGATACAGTGCTGACAAGGATGTGGTGGTCCTCACCAGCGGACACACTGGGGGAGTCGCAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 72 bp ACCAGAGGCATCGCCGAGGACGGACCCCCAGGGTTATaGCGCAGGTCCATGATGAGGTGTTCCGTGTCCTGC +
Preference number: 6 (lower is better)
Translates to: TRGIAEDGPPGL*RRSMMRCSVSC
Trigger: GCAGGACACGGAACACCTCATCATGGACCTGCGTCATAACCCTGGGGGTCCGTCCTCGGCGATGCCTCTGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 72 bp TCCCAGGCCTCACCGGTGCTGGCACTCAGGGCCATCTaGGTAGGCATGGAGGCATATAAGGGGCTGTTGCCC +
Preference number: 6 (lower is better)
Translates to: SQASPVLALRAI*VGMEAYKGLLP
Trigger: GGGCAACAGCCCCTTATATGCCTCCATGCCTACTCAGATGGCCCTGAGTGCCAGCACCGGTGAGGCCTGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp GCGCCGCATCTGCTTCAGGATGTAGGCAATGTCCTCTaGGACTCCCCCAGTGTGTCCGCTGGTGAGGACCAC +
Preference number: 6 (lower is better)
Translates to: APHLLQDVGNVL*DSPSVSAGEDH
Trigger: GTGGTCCTCACCAGCGGACACACTGGGGGAGTCGCAGAGGACATTGCCTACATCCTGAAGCAGATGCGGCGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp TGGAGGCATATAAGGGGCTGTTGCCCACCTGGTAGATaGCCACGGAGAGTGCCCCTCCAGCTGTGGGCTCTC +
Preference number: 6 (lower is better)
Translates to: WRHIRGCCPPGR*PRRVPLQLWAL
Trigger: GAGAGCCCACAGCTGGAGGGGCACTCTCCGTGGGCATCTACCAGGTGGGCAACAGCCCCTTATATGCCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp TCTCCCCGAGGACCTCGGGCAAGGTCCAGATCTCTGTaGTGGTGTTGGAGGGCCGATCGTAGACGGTGTCCA +
Preference number: 6 (lower is better)
Translates to: SPRGPRARSRSL*WCWRADRRRCP
Trigger: TGGACACCGTCTACGATCGGCCCTCCAACACCACCACAGAGATCTGGACCTTGCCCGAGGTCCTCGGGGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CAA 90 bp CCTAGAGGTCCCAGGGACCTGGACACAGGCACTGTGAGGAAGAAGTaGGACTGGCCTATTCTCAGCTTCTGGAGGTCCAGGGCCCCACCC +
Preference number: 6 (lower is better)
Translates to: PRGPRDLDTGTVRKK*DWPILSFWRSRAPP
Trigger: GGGTGGGGCCCTGGACCTCCAGAAGCTGAGAATAGGCCAGTCCAACTTCTTCCTCACAGTGCCTGTGTCCAGGTCCCTGGGACCTCTAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CAA 90 bp CTCCAAGTCCACAGCTGTGCGGTAGGCTCCTTGGGCCAACTTAGATaGCAGGAGAGCTCTGGCCCGCTGTGCGATCTCTGGCCGGGCATA +
Preference number: 6 (lower is better)
Translates to: LQVHSCAVGSLGQLR*QESSGPLCDLWPGI
Trigger: TATGCCCGGCCAGAGATCGCACAGCGGGCCAGAGCTCTCCTGCAATCTAAGTTGGCCCAAGGAGCCTACCGCACAGCTGTGGACTTGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 72 bp CCTGGGCTGTGGAAAGGGCCTCACTCATGGGCACAGTaGTGTCAGGTTCCACACCAGCCAAGTCCCAGGCCT +
Preference number: 6 (lower is better)
Translates to: PGLWKGPHSWAQ*CQVPHQPSPRP
Trigger: AGGCCTGGGACTTGGCTGGTGTGGAACCTGACATCACTGTGCCCATGAGTGAGGCCCTTTCCACAGCCCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 72 bp CAGATCTGCCCCCAGCATCTCAGCCAAGGCCCCTTCTaGAGTCACCCTTGCATAGCGGCTCTGCAGACCGCT +
Preference number: 6 (lower is better)
Translates to: QICPQHLSQGPF*SHPCIAALQTA
Trigger: AGCGGTCTGCAGAGCCGCTATGCAAGGGTGACTTCAGAAGGGGCCTTGGCTGAGATGCTGGGGGCAGATCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp TTGGCCATATCCAGTACCAGGCTTGGCTGGAAGAGGTaGGTGGGACCAGCCGGAACCCAGAGCAGTGTGGAC +
Preference number: 6 (lower is better)
Translates to: LAISSTRLGWKR*VGPAGTQSSVD
Trigger: GTCCACACTGCTCTGGGTTCCGGCTGGTCCCACGCACCTCTTCCAGCCAAGCCTGGTACTGGATATGGCCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp CAGCAGTTCTTCTCGGGTGAGGTTGGTGAGCACTGGTaGTTGCTGGGGAGCCTCGAGGGTACTGGGCTCGTA +
Preference number: 6 (lower is better)
Translates to: QQFFSGEVGEHW*LLGSLEGTGLV
Trigger: TACGAGCCCAGTACCCTCGAGGCTCCCCAGCAAGCACCAGTGCTCACCAACCTCACCCGAGAAGAACTGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp GCCCTCACCAGGAGCCTGGGATCCTCCGACACAGCCTaGAAGCCAGCATTGAGCTTTGTCACCAGGTCCTCT +
Preference number: 6 (lower is better)
Translates to: ALTRSLGSSDTA*KPALSFVTRSS
Trigger: AGAGGACCTGGTGACAAAGCTCAATGCTGGCTTGCAGGCTGTGTCGGAGGATCCCAGGCTCCTGGTGAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp AGGAGGATCTTGGCCATATCCAGTACCAGGCTTGGCTaGAAGAGGTGCGTGGGACCAGCCGGAACCCAGAGC +
Preference number: 6 (lower is better)
Translates to: RRILAISSTRLG*KRCVGPAGTQS
Trigger: GCTCTGGGTTCCGGCTGGTCCCACGCACCTCTTCCAGCCAAGCCTGGTACTGGATATGGCCAAGATCCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp AGAGGGACCTCCTCTGCCACAAGCTCCCCAGGGCTATaGAATACCAGCAGGCGGTGGTCCTCAGATACCTCC +
Preference number: 6 (lower is better)
Translates to: RGTSSATSSPGL*NTSRRWSSDTS
Trigger: GGAGGTATCTGAGGACCACCGCCTGCTGGTATTCCATAGCCCTGGGGAGCTTGTGGCAGAGGAGGTCCCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp CCTCGGCGGCACCGGCTGTCACACCACTGGTCAGGATaGCTACGCTCTTCTTGGAGCCATATCGTTCACCTG +
Preference number: 6 (lower is better)
Translates to: PRRHRLSHHWSG*LRSSWSHIVHL
Trigger: CAGGTGAACGATATGGCTCCAAGAAGAGCGTAGCCATCCTGACCAGTGGTGTGACAGCCGGTGCCGCCGAGG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CAA 72 bp CACAGCTGTGCGGTAGGCTCCTTGGGCCAACTTAGATaGCAGGAGAGCTCTGGCCCGCTGTGCGATCTCTGG +
Preference number: 6 (lower is better)
Translates to: HSCAVGSLGQLR*QESSGPLCDLW
Trigger: CCAGAGATCGCACAGCGGGCCAGAGCTCTCCTGCAATCTAAGTTGGCCCAAGGAGCCTACCGCACAGCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CAA 90 bp GGTGATGTAGAGATGGGTGTCATCCACGTGGTAGGTCTGCGGTGGTaGGCAACCTCCACTTGTCACTTCACCGATGACCAGGGCCCGGCC +
Preference number: 6 (lower is better)
Translates to: GDVEMGVIHVVGLRW*ATSTCHFTDDQGPA
Trigger: GGCCGGGCCCTGGTCATCGGTGAAGTGACAAGTGGAGGTTGCCAACCACCGCAGACCTACCACGTGGATGACACCCATCTCTACATCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 72 bp CCTATAACGGTGGCCCGCTGTAGGTCCTGCATAGTGTaGGCAAAGGCCTCGGCTGCAGAGCCACTAGTGTGG +
Preference number: 6 (lower is better)
Translates to: PITVARCRSCIV*AKASAAEPLVW
Trigger: CCACACTAGTGGCTCTGCAGCCGAGGCCTTTGCTCACACTATGCAGGACCTACAGCGGGCCACCGTTATAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp GGCCAGGGAGGTCGTCCACTCGTAGGTAGCCCACGTTaGCCTCAAGAACCTCATGGCGGATGTTCCTCTGTA +
Preference number: 6 (lower is better)
Translates to: GQGGRPLVGSPR*PQEPHGGCSSV
Trigger: TACAGAGGAACATCCGCCATGAGGTTCTTGAGGGCAACGTGGGCTACCTACGAGTGGACGACCTCCCTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp CACGTAAGGGCCCAGCGTCTCCAGCACAGCGGCGTCTaGAAATCTATCAAAGCGCAGGTAGCCCACATTGCC +
Preference number: 6 (lower is better)
Translates to: HVRAQRLQHSGV*KSIKAQVAHIA
Trigger: GGCAATGTGGGCTACCTGCGCTTTGATAGATTTGCAGACGCCGCTGTGCTGGAGACGCTGGGCCCTTACGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp ACAGTGGGCACCTTAGCACGCAGGACCACTATGTCCTaGGCTGTGGAAAGGGCCTCACTCATGGGCACAGTG +
Preference number: 6 (lower is better)
Translates to: TVGTLARRTTMS*AVERASLMGTV
Trigger: CACTGTGCCCATGAGTGAGGCCCTTTCCACAGCCCAGGACATAGTGGTCCTGCGTGCTAAGGTGCCCACTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CAA 72 bp CAGTTCTTCTCGGGTGAGGTTGGTGAGCACTGGTGCTaGCTGGGGAGCCTCGAGGGTACTGGGCTCGTAAGA +
Preference number: 6 (lower is better)
Translates to: QFFSGEVGEHWC*LGSLEGTGLVR
Trigger: TCTTACGAGCCCAGTACCCTCGAGGCTCCCCAGCAAGCACCAGTGCTCACCAACCTCACCCGAGAAGAACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 72 bp TCCAGCTGTCAGCACTTGGGCCAGCGTCTGAGGGTCTaGGATGCCCAGAATCTCGTGACTCTTCATCGCCTG +
Preference number: 6 (lower is better)
Translates to: SSCQHLGQRLRV*DAQNLVTLHRL
Trigger: CAGGCGATGAAGAGTCACGAGATTCTGGGCATCTCAGACCCTCAGACGCTGGCCCAAGTGCTGACAGCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp CCATATCCAGTACCAGGCTTGGCTGGAAGAGGTGCGTaGGACCAGCCGGAACCCAGAGCAGTGTGGACAAAA +
Preference number: 6 (lower is better)
Translates to: PYPVPGLAGRGA*DQPEPRAVWTK
Trigger: TTTTGTCCACACTGCTCTGGGTTCCGGCTGGTCCCACGCACCTCTTCCAGCCAAGCCTGGTACTGGATATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp GACCTGGACACAGGCACTGTGAGGAAGAAGTTGGACTaGCCTATTCTCAGCTTCTGGAGGTCCAGGGCCCCA +
Preference number: 6 (lower is better)
Translates to: DLDTGTVRKKLD*PILSFWRSRAP
Trigger: TGGGGCCCTGGACCTCCAGAAGCTGAGAATAGGCCAGTCCAACTTCTTCCTCACAGTGCCTGTGTCCAGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp GAGGCCCAATGGCCTTTACTGTCTCTAGCTCAGCCATaGCGTCAAAACGCAAGTAGCCGAGCTGGCCGGGTA +
Preference number: 6 (lower is better)
Translates to: EAQWPLLSLAQP*RQNASSRAGRV
Trigger: TACCCGGCCAGCTCGGCTACTTGCGTTTTGACGCCATGGCTGAGCTAGAGACAGTAAAGGCCATTGGGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 72 bp CAATGTCCTCTGCGACTCCCCCAGTGTGTCCGCTGGTaGGGACCACCACATCCTTGTCAGCACTGTATCTCT +
Preference number: 6 (lower is better)
Translates to: QCPLRLPQCVRW*GPPHPCQHCIS
Trigger: AGAGATACAGTGCTGACAAGGATGTGGTGGTCCTCACCAGCGGACACACTGGGGGAGTCGCAGAGGACATTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp CTGTCAGCACTTGGGCCAGCGTCTGAGGGTCTGAGATaGCCAGAATCTCGTGACTCTTCATCGCCTGCTCAA +
Preference number: 6 (lower is better)
Translates to: LSALGPASEGLR*PESRDSSSPAQ
Trigger: TTGAGCAGGCGATGAAGAGTCACGAGATTCTGGGCATCTCAGACCCTCAGACGCTGGCCCAAGTGCTGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp CCCTCAAGAACCTCATGGCGGATGTTCCTCTGTATCTaGGCCAGCAGTTCTTCTCGGGTGAGGTTGGTGAGC +
Preference number: 6 (lower is better)
Translates to: PSRTSWRMFLCI*ASSSSRVRLVS
Trigger: GCTCACCAACCTCACCCGAGAAGAACTGCTGGCCCAGATACAGAGGAACATCCGCCATGAGGTTCTTGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp GCCTCTGCCACACCAGCTGTACTAGCTGAGGCCCAATaGCCTTTACTGTCTCTAGCTCAGCCATGGCGTCAA +
Preference number: 6 (lower is better)
Translates to: ASATPAVLAEAQ*PLLSLAQPWRQ
Trigger: TTGACGCCATGGCTGAGCTAGAGACAGTAAAGGCCATTGGGCCTCAGCTAGTACAGCTGGTGTGGCAGAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CAA 72 bp CACAAGGCTGAGATGGAGGAGGTGGGGCCGCCAAGGTaGAACCTCATGTCGATGATCAGGGCATCAGTGTGT +
Preference number: 6 (lower is better)
Translates to: HKAEMEEVGPPR*NLMSMIRASVC
Trigger: ACACACTGATGCCCTGATCATCGACATGAGGTTCAACCTTGGCGGCCCCACCTCCTCCATCTCAGCCTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CAA 72 bp GAGATGGGTGTCATCCACGTGGTAGGTCTGCGGTGGTaGGCAACCTCCACTTGTCACTTCACCGATGACCAG +
Preference number: 6 (lower is better)
Translates to: EMGVIHVVGLRW*ATSTCHFTDDQ
Trigger: CTGGTCATCGGTGAAGTGACAAGTGGAGGTTGCCAACCACCGCAGACCTACCACGTGGATGACACCCATCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp CGTCTGCAAATCTATCAAAGCGCAGGTAGCCCACATTaGCCGGCAGCACGGACACCTGAAACACAGAGTCCA +
Preference number: 6 (lower is better)
Translates to: RLQIYQSAGSPH*PAARTPETQSP
Trigger: TGGACTCTGTGTTTCAGGTGTCCGTGCTGCCGGGCAATGTGGGCTACCTGCGCTTTGATAGATTTGCAGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp AGGAAGGCAAACTCTTCGGCAGCTGTGGCAGTCCTGTaGCTAGTAAGCAGGTACACTCCACGCTGGTTACCA +
Preference number: 6 (lower is better)
Translates to: RKANSSAAVAVL*LVSRYTPRWLP
Trigger: TGGTAACCAGCGTGGAGTGTACCTGCTTACTAGCCACAGGACTGCCACAGCTGCCGAAGAGTTTGCCTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp GTAGAGATGGGTGTCATCCACGTGGTAGGTCTGCGGTaGTTGGCAACCTCCACTTGTCACTTCACCGATGAC +
Preference number: 6 (lower is better)
Translates to: VEMGVIHVVGLR*LATSTCHFTDD
Trigger: GTCATCGGTGAAGTGACAAGTGGAGGTTGCCAACCACCGCAGACCTACCACGTGGATGACACCCATCTCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp AATAGGAGCAGAGTAGAGGAACGGCAGAAGAGTAGCTaGCAGGGTTGTAGCGCAGGTCAACAATCAGCGCAG +
Preference number: 6 (lower is better)
Translates to: NRSRVEERQKSS*QGCSAGQQSAQ
Trigger: CTGCGCTGATTGTTGACCTGCGCTACAACCCTGGCAGCTACTCTTCTGCCGTTCCTCTACTCTGCTCCTATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp TTCTTCCAGATGTGTTCTACCAGCAGCTCGGAGACCTaGGTAAGCAGCTCGCAGTCCCCGAACATGTCGAAT +
Preference number: 6 (lower is better)
Translates to: FFQMCSTSSSET*VSSSQSPNMSN
Trigger: ATTCGACATGTTCGGGGACTGCGAGCTGCTTACCCAGGTCTCCGAGCTGCTGGTAGAACACATCTGGAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS TCA 72 bp ACGCTCTTCTTGGAGCCATATCGTTCACCTGTGAGCTaGGTGTGGGTCCAAAGTTCGCTGACCGAGTCATTG +
Preference number: 6 (lower is better)
Translates to: TLFLEPYRSPVS*VWVQSSLTESL
Trigger: CAATGACTCGGTCAGCGAACTTTGGACCCACACTCAGCTCACAGGTGAACGATATGGCTCCAAGAAGAGCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp GGTTCTCAGGGAAGCAGTAGTTATCCAGGAGGATCTTaGCCATATCCAGTACCAGGCTTGGCTGGAAGAGGT +
Preference number: 6 (lower is better)
Translates to: GSQGSSSYPGGS*PYPVPGLAGRG
Trigger: ACCTCTTCCAGCCAAGCCTGGTACTGGATATGGCCAAGATCCTCCTGGATAACTACTGCTTCCCTGAGAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CAA 90 bp GATGCCCAGAATCTCGTGACTCTTCATCGCCTGCTCAATGGCTGCTaGCATTCCCATCAGGTTCTCAGGGAAGCAGTAGTTATCCAGGAG +
Preference number: 6 (lower is better)
Translates to: DAQNLVTLHRLLNGC*HSHQVLREAVVIQE
Trigger: CTCCTGGATAACTACTGCTTCCCTGAGAACCTGATGGGAATGCAAGCAGCCATTGAGCAGGCGATGAAGAGTCACGAGATTCTGGGCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS GCA 72 bp CAGAATCTCGTGACTCTTCATCGCCTGCTCAATGGCTaGTTGCATTCCCATCAGGTTCTCAGGGAAGCAGTA +
Preference number: 6 (lower is better)
Translates to: QNLVTLHRLLNG*LHSHQVLREAV
Trigger: TACTGCTTCCCTGAGAACCTGATGGGAATGCAAGCAGCCATTGAGCAGGCGATGAAGAGTCACGAGATTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp AGTCATTGGGCCGGTTGTAGATCTTGTCCAGCAGAATaGGAGGTGCCTCGTCAAAGAAGTAAGAGCACAAGG +
Preference number: 6 (lower is better)
Translates to: SHWAGCRSCPAE*EVPRQRSKSTR
Trigger: CCTTGTGCTCTTACTTCTTTGACGAGGCACCTCCCATTCTGCTGGACAAGATCTACAACCGGCCCAATGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CCA 72 bp GTGGAAGGAAAACTTGATCAGGTCTTCAAAGACTTCTaGGGAGGGAATCTGCATAGGCACGATTCCAGGAAT +
Preference number: 6 (lower is better)
Translates to: VEGKLDQVFKDF*GGNLHRHDSRN
Trigger: ATTCCTGGAATCGTGCCTATGCAGATTCCCTCCCCAGAAGTCTTTGAAGACCTGATCAAGTTTTCCTTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10
CDS CAA 72 bp ATGTTGTCCTCAAGGACATTTGTGTGGAAGGAAAACTaGATCAGGTCTTCAAAGACTTCTGGGGAGGGAATC +
Preference number: 6 (lower is better)
Translates to: MLSSRTFVWKEN*IRSSKTSGEGI
Trigger: GATTCCCTCCCCAGAAGTCTTTGAAGACCTGATCAAGTTTTCCTTCCACACAAATGTCCTTGAGGACAACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035695.10