Pregenerated sensors for RBP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046402Ensembl transcript IDs: ENSMUST00000052068.11
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCCATCCCACTTGTTCCTaGAGACCAAGGTTATCTCCT | + |
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Preference number: 2 (lower is better) Translates to: QRERLRWQKPGVGMRFGPHPTCS*RPRLSP Trigger: AGGAGATAACCTTGGTCTTCAGGAACAAGTGGGATG...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| 3UTR-3UTR CAA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCACAGGCCCATCCCACTaGTTCCTGAAGACCAAGGTT | + |
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Preference number: 3 (lower is better) Translates to: QRERLRWQKPGVGMRFGPTGPSH*FLKTKV Trigger: AACCTTGGTCTTCAGGAACAAGTGGGATGGGCCTGT...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| 3UTR CCA 72 bp | AAAGGAAAAGAGACCAGGCAAAGAGAGAGACTTCGCTaGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCC | + |
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Preference number: 3 (lower is better) Translates to: KGKETRQRERLR*QKPGVGMRFGP Trigger: GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTGCCTGGTCTCTTTTCCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR GCA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCTCACCCTCGATCCACTaGGTCCAGCCACGTCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: QRERLRWQKPGVGMRFGPSPSIH*VQPRPS Trigger: GGAGGGACGTGGCTGGACGCAGTGGATCGAGGGTGA...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR TCA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCTGCTCAGCGTGCGGATaGTCATGTGGTCGCCATCCT | + |
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Preference number: 4 (lower is better) Translates to: QRERLRWQKPGVGMRFGPCSACG*SCGRHP Trigger: AGGATGGCGACCACATGATCATCCGCACGCTGAGCA...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR CCA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCGTGCGGATGATCATGTaGTCGCCATCCTGCACGATC | + |
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Preference number: 4 (lower is better) Translates to: QRERLRWQKPGVGMRFGPVRMIM*SPSCTI Trigger: GATCGTGCAGGATGGCGACCACATGATCATCCGCAC...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR GCA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCATGTGGTCGCCATCCTaGACGATCTCTTTGTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: QRERLRWQKPGVGMRFGPMWSPS*TISLSG Trigger: GCCAGACAAAGAGATCGTGCAGGATGGCGACCACAT...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR GCA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCCAGTGGTCATGCACTTaGGGTCGTCTATGCCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: QRERLRWQKPGVGMRFGPQWSCT*GRLCLS Trigger: TGACAGGCATAGACGACCGCAAGTGCATGACCACTG...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR CCA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCCCCTTCTGCACACACTaGAGTTTGTCACCATCCCAG | + |
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Preference number: 4 (lower is better) Translates to: QRERLRWQKPGVGMRFGPPFCTH*SLSPSQ Trigger: CTGGGATGGTGACAAACTCCAGTGTGTGCAGAAGGG...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR TCA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCGCTCTCATTTCCAGGTaGAGTTCATCACCCTCGATC | + |
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Preference number: 4 (lower is better) Translates to: QRERLRWQKPGVGMRFGPALISR*SSSPSI Trigger: GATCGAGGGTGATGAACTTCACCTGGAAATGAGAGC...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR CCA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCCTGGCTTCAGCAAGTTaGCGATTTTGCGTAAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: QRERLRWQKPGVGMRFGPLASAS*RFCVRP Trigger: TGGCCTTACGCAAAATCGCCAACTTGCTGAAGCCAG...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR CCA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCCACGATCTCTTTGTCTaGCTTCAGCAAGTTGGCGAT | + |
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Preference number: 4 (lower is better) Translates to: QRERLRWQKPGVGMRFGPHDLFV*LQQVGD Trigger: ATCGCCAACTTGCTGAAGCCAGACAAAGAGATCGTG...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR TCA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCCAACTTGGAAGTCCATaGTATAGTTCCGAAAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: QRERLRWQKPGVGMRFGPQLGSP*YSSEKC Trigger: GCACTTTTCGGAACTATATCATGGACTTCCAAGTTG...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR CAA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCACAGTGGTCATGCACTaGCGGTCGTCTATGCCTGTC | + |
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Preference number: 5 (lower is better) Translates to: QRERLRWQKPGVGMRFGPTVVMH*RSSMPV Trigger: GACAGGCATAGACGACCGCAAGTGCATGACCACTGT...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR CAA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCAGCAAGTTGGCGATTTaGCGTAAGGCCACGTTGACG | + |
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Preference number: 5 (lower is better) Translates to: QRERLRWQKPGVGMRFGPSKLAI*RKATLT Trigger: CGTCAACGTGGCCTTACGCAAAATCGCCAACTTGCT...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR CAA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCTCTGGCTTCAGCAAGTaGGCGATTTTGCGTAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: QRERLRWQKPGVGMRFGPSGFSK*AILRKA Trigger: GGCCTTACGCAAAATCGCCAACTTGCTGAAGCCAGA...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR CAA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCTGCACACACTGGAGTTaGTCACCATCCCAGCTCACA | + |
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Preference number: 5 (lower is better) Translates to: QRERLRWQKPGVGMRFGPCTHWS*SPSQLT Trigger: TGTGAGCTGGGATGGTGACAAACTCCAGTGTGTGCA...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR CAA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCTCCTGCACGATCTCTTaGTCTGGCTTCAGCAAGTTG | + |
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Preference number: 5 (lower is better) Translates to: QRERLRWQKPGVGMRFGPSCTIS*SGFSKL Trigger: CAACTTGCTGAAGCCAGACAAAGAGATCGTGCAGGA...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR CAA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCTTCTTAAACACTTGCTaGCAGATCACACCCTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: QRERLRWQKPGVGMRFGPFLNTC*QITPSA Trigger: AGCTGAGGGTGTGATCTGCAAGCAAGTGTTTAAGAA...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS GCA 90 bp | TGTCACCATCCCAGCTCACAGTGGTCATGCACTTGCGGTCGTCTATaGCTGTCAGATCTTCCTCAAACTCCTTCCCAACTTGGAAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: CHHPSSQWSCTCGRL*LSDLPQTPSQLGSP Trigger: TGGACTTCCAAGTTGGGAAGGAGTTTGAGGAAGATCTGACAGGCATAGACGACCGCAAGTGCATGACCACTGTGAGCTGGGATGGTGACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR CAA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCTACTTTCTTAAACACTaGCTTGCAGATCACACCCTC | + |
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Preference number: 5 (lower is better) Translates to: QRERLRWQKPGVGMRFGPYFLKH*LADHTL Trigger: GAGGGTGTGATCTGCAAGCAAGTGTTTAAGAAAGTA...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS-3UTR CAA 90 bp | CAAAGAGAGAGACTTCGCTGGCAGAAGCCTGGGGTGGGTATGCGTTTCGGTCCCAAACTCCTTCCCAACTaGGAAGTCCATGATATAGTT | + |
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Preference number: 5 (lower is better) Translates to: QRERLRWQKPGVGMRFGPKLLPN*EVHDIV Trigger: AACTATATCATGGACTTCCAAGTTGGGAAGGAGTTT...GGGACCGAAACGCATACCCACCCCAGGCTTCTGCCAGCGAAGTCTCTCTCTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS GCA 72 bp | GTGCTCAGCGTGCGGATGATCATGTGGTCGCCATCCTaGACGATCTCTTTGTCTGGCTTCAGCAAGTTGGCG | + |
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Preference number: 6 (lower is better) Translates to: VLSVRMIMWSPS*TISLSGFSKLA Trigger: CGCCAACTTGCTGAAGCCAGACAAAGAGATCGTGCAGGATGGCGACCACATGATCATCCGCACGCTGAGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS TCA 72 bp | GCTTCAGCAAGTTGGCGATTTTGCGTAAGGCCACGTTaGCGTCGAGCGCGCGCAGGTACTCCTCGAAATTCT | + |
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Preference number: 6 (lower is better) Translates to: ASASWRFCVRPR*RRARAGTPRNS Trigger: AGAATTTCGAGGAGTACCTGCGCGCGCTCGACGTCAACGTGGCCTTACGCAAAATCGCCAACTTGCTGAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS TCA 72 bp | TGCTTGCAGATCACACCCTCAGCTCTCATTTCCAGGTaGAGTTCATCACCCTCGATCCACTGCGTCCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: CLQITPSALISR*SSSPSIHCVQP Trigger: TGGCTGGACGCAGTGGATCGAGGGTGATGAACTTCACCTGGAAATGAGAGCTGAGGGTGTGATCTGCAAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS CAA 72 bp | ACGTCGAGCGCGCGCAGGTACTCCTCGAAATTCTCATaGCTCAGCATCTTCCAGTACCCGTTGAAGTCCACA | + |
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Preference number: 6 (lower is better) Translates to: TSSARRYSSKFS*LSIFQYPLKST Trigger: TGTGGACTTCAACGGGTACTGGAAGATGCTGAGCAATGAGAATTTCGAGGAGTACCTGCGCGCGCTCGACGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS GCA 72 bp | GTTTGTCACCATCCCAGCTCACAGTGGTCATGCACTTaGGGTCGTCTATGCCTGTCAGATCTTCCTCAAACT | + |
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Preference number: 6 (lower is better) Translates to: VCHHPSSQWSCT*GRLCLSDLPQT Trigger: AGTTTGAGGAAGATCTGACAGGCATAGACGACCGCAAGTGCATGACCACTGTGAGCTGGGATGGTGACAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS CAA 72 bp | AGTTTGTCACCATCCCAGCTCACAGTGGTCATGCACTaGCGGTCGTCTATGCCTGTCAGATCTTCCTCAAAC | + |
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Preference number: 6 (lower is better) Translates to: SLSPSQLTVVMH*RSSMPVRSSSN Trigger: GTTTGAGGAAGATCTGACAGGCATAGACGACCGCAAGTGCATGACCACTGTGAGCTGGGATGGTGACAAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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| CDS CAA 72 bp | TATGCCTGTCAGATCTTCCTCAAACTCCTTCCCAACTaGGAAGTCCATGATATAGTTCCGAAAAGTGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: YACQIFLKLLPN*EVHDIVPKSAQ Trigger: CTGAGCACTTTTCGGAACTATATCATGGACTTCCAAGTTGGGAAGGAGTTTGAGGAAGATCTGACAGGCATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052068.11 |
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