Pregenerated sensors for RBMY (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094658

Ensembl transcript IDs: ENSMUST00000100360.5, ENSMUST00000171534.8

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ATTGAAATTAGGAGTATATCTATCACCACCCAAGTTCCCTTCACATaGAGGACCACTTCTTGCTCTGCTTCTTCCTCCTCTTCCACATTT	+
Preference number: 5 (lower is better) Translates to: IEIRSISITTQVPFT*RTTSCSASSSSSTF Trigger: AAATGTGGAAGAGGAGGAAGAAGCAGAGCAAGAAGTGGTCCTTCATGTGAAGGGAACTTGGGTGGTGATAGATATACTCCTAATTTCAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS GCA 90 bp	GCCTCTAGACTTCTTAGTTTCACGATCTCTCATCAAAATAACACGTaGTACTGGTCCAAATCTCCCAAATATTTCTTGAAGAGTCTTTTG	+
Preference number: 5 (lower is better) Translates to: ASRLLSFTISHQNNT*YWSKSPKYFLKSLL Trigger: CAAAAGACTCTTCAAGAAATATTTGGGAGATTTGGACCAGTAGCACGTGTTATTTTGATGAGAGATCGTGAAACTAAGAAGTCTAGAGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS TCA 90 bp	ATCAAAATAACACGTGCTACTGGTCCAAATCTCCCAAATATTTCTTaGAGAGTCTTTTGTCTGGTCTTTATGTTGAGGCCTCCTATAAAA	+
Preference number: 5 (lower is better) Translates to: IKITRATGPNLPNIS*RVFCLVFMLRPPIK Trigger: TTTTATAGGAGGCCTCAACATAAAGACCAGACAAAAGACTCTTCAAGAAATATTTGGGAGATTTGGACCAGTAGCACGTGTTATTTTGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS GCA 72 bp	TCACGAGATGCACTATACAGCCCATCCTTAGGTGAATaGCCTCTTTCCTGTCTGCCCTCACGGTCAAAGTAT	+
Preference number: 6 (lower is better) Translates to: SRDALYSPSLGE*PLSCLPSRSKY Trigger: ATACTTTGACCGTGAGGGCAGACAGGAAAGAGGGCATTCACCTAAGGATGGGCTGTATAGTGCATCTCGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS CCA 72 bp	GCCCTCACGGTCAAAGTATTCCCTATCAATAGGTGGTaGAAGCACTTCTTGTCTACCACTACGTTCATAGTC	+
Preference number: 6 (lower is better) Translates to: ALTVKVFPINRW*KHFLSTTTFIV Trigger: GACTATGAACGTAGTGGTAGACAAGAAGTGCTTCCACCACCTATTGATAGGGAATACTTTGACCGTGAGGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS CCA 72 bp	GCTTTCTCCACGACCTCCATGGGATCCCCCAAATCTTaGTATTACTACTGTATGATTCACGAGATGCACTAT	+
Preference number: 6 (lower is better) Translates to: AFSTTSMGSPKS*YYYCMIHEMHY Trigger: ATAGTGCATCTCGTGAATCATACAGTAGTAATACCAAGATTTGGGGGATCCCATGGAGGTCGTGGAGAAAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS GCA 72 bp	TCCAAGATAGCCAGCATGATCACTGAAGACTTTAGATaGACTTTCTTCCCGAGAGTGGTAATTGCCATAGTC	+
Preference number: 6 (lower is better) Translates to: SKIASMITEDFR*TFFPRVVIAIV Trigger: GACTATGGCAATTACCACTCTCGGGAAGAAAGTGCATCTAAAGTCTTCAGTGATCATGCTGGCTATCTTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS GCA 72 bp	GTTACTATAGTCATCATAGCGGTTGTTTCCACCTCTTaGAGATGGTGCCTCATGGAATCTTCCATAACTTCT	+
Preference number: 6 (lower is better) Translates to: VTIVIIAVVSTS*RWCLMESSITS Trigger: AGAAGTTATGGAAGATTCCATGAGGCACCATCTGCAAGAGGTGGAAACAACCGCTATGATGACTATAGTAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS CCA 72 bp	ATAGTCATCATAGCGGTTGTTTCCACCTCTTGCAGATaGTGCCTCATGGAATCTTCCATAACTTCTGTATGT	+
Preference number: 6 (lower is better) Translates to: IVIIAVVSTSCR*CLMESSITSVC Trigger: ACATACAGAAGTTATGGAAGATTCCATGAGGCACCATCTGCAAGAGGTGGAAACAACCGCTATGATGACTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS CAA 72 bp	AGTTACTATAGTCATCATAGCGGTTGTTTCCACCTCTaGCAGATGGTGCCTCATGGAATCTTCCATAACTTC	+
Preference number: 6 (lower is better) Translates to: SYYSHHSGCFHL*QMVPHGIFHNF Trigger: GAAGTTATGGAAGATTCCATGAGGCACCATCTGCAAGAGGTGGAAACAACCGCTATGATGACTATAGTAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS TCA 72 bp	ACACGTGCTACTGGTCCAAATCTCCCAAATATTTCTTaGAGAGTCTTTTGTCTGGTCTTTATGTTGAGGCCT	+
Preference number: 6 (lower is better) Translates to: TRATGPNLPNIS*RVFCLVFMLRP Trigger: AGGCCTCAACATAAAGACCAGACAAAAGACTCTTCAAGAAATATTTGGGAGATTTGGACCAGTAGCACGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS CAA 72 bp	AACACGTGCTACTGGTCCAAATCTCCCAAATATTTCTaGAAGAGTCTTTTGTCTGGTCTTTATGTTGAGGCC	+
Preference number: 6 (lower is better) Translates to: NTCYWSKSPKYF*KSLLSGLYVEA Trigger: GGCCTCAACATAAAGACCAGACAAAAGACTCTTCAAGAAATATTTGGGAGATTTGGACCAGTAGCACGTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS CAA 90 bp	CATCTTGTGAGTTACTATAGTCATCATAGCGGTTGTTTCCACCTCTaGCAGATGGTGCCTCATGGAATCTTCCATAACTTCTGTATGTAT	+
Preference number: 6 (lower is better) Translates to: HLVSYYSHHSGCFHL*QMVPHGIFHNFCMY Trigger: ATACATACAGAAGTTATGGAAGATTCCATGAGGCACCATCTGCAAGAGGTGGAAACAACCGCTATGATGACTATAGTAACTCACAAGATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS CAA 72 bp	GAAGCACTTCTTGTCTACCACTACGTTCATAGTCACTaGAGTATATGTTACTTCGGTTGCTTATGTATGGTT	+
Preference number: 6 (lower is better) Translates to: EALLVYHYVHSH*SICYFGCLCMV Trigger: AACCATACATAAGCAACCGAAGTAACATATACTCAAGTGACTATGAACGTAGTGGTAGACAAGAAGTGCTTC 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS GCA 72 bp	CTTCTTAGTTTCACGATCTCTCATCAAAATAACACGTaGTACTGGTCCAAATCTCCCAAATATTTCTTGAAG	+
Preference number: 6 (lower is better) Translates to: LLSFTISHQNNT*YWSKSPKYFLK Trigger: CTTCAAGAAATATTTGGGAGATTTGGACCAGTAGCACGTGTTATTTTGATGAGAGATCGTGAAACTAAGAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8
CDS CAA 72 bp	TGGTCCAAATCTCCCAAATATTTCTTGAAGAGTCTTTaGTCTGGTCTTTATGTTGAGGCCTCCTATAAAAAT	+
Preference number: 6 (lower is better) Translates to: WSKSPKYFLKSL*SGLYVEASYKN Trigger: ATTTTTATAGGAGGCCTCAACATAAAGACCAGACAAAAGACTCTTCAAGAAATATTTGGGAGATTTGGACCA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000100360.5 ENSMUST00000171534.8

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