Pregenerated sensors for RBMXL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073894

Ensembl transcript IDs: ENSMUST00000098135.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	CAGGAAACTGATTCTTCTTTTTCTAGACTTCCGATGCCAGTCCTGAGGCCAGCGGTTCATGTCTCGGGCTaGGGCCTTGGCGTCCGCGGG	+
Preference number: 4 (lower is better) Translates to: QETDSSFSRLPMPVLRPAVHVSG*GLGVRG Trigger: CCCGCGGACGCCAAGGCCGCAGCCCGAGACATGAAC...CGCTGGCCTCAGGACTGGCATCGGAAGTCTAGAAAAAGAAGAATCAGTTTCCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098135.2
CDS-3UTR CAA 90 bp	CAGGAAACTGATTCTTCTTTTTCTAGACTTCCGATGCCAGTCCTGAGGCCAGCGTCTCGGGCTGCGGCCTaGGCGTCCGCGGGGTTCTCG	+
Preference number: 5 (lower is better) Translates to: QETDSSFSRLPMPVLRPASRAAA*ASAGFS Trigger: CGAGAACCCCGCGGACGCCAAGGCCGCAGCCCGAGA...CGCTGGCCTCAGGACTGGCATCGGAAGTCTAGAAAAAGAAGAATCAGTTTCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098135.2
CDS-3UTR CAA 90 bp	CAGGAAACTGATTCTTCTTTTTCTAGACTTCCGATGCCAGTCCTGAGGCCAGCGCACCGGCTTGGTGGCTaGGGCCACTTTGATGGCCTT	+
Preference number: 5 (lower is better) Translates to: QETDSSFSRLPMPVLRPAHRLGG*GHFDGL Trigger: AAGGCCATCAAAGTGGCCCAAGCCACCAAGCCGGTG...CGCTGGCCTCAGGACTGGCATCGGAAGTCTAGAAAAAGAAGAATCAGTTTCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098135.2
CDS-3UTR CAA 90 bp	CAGGAAACTGATTCTTCTTTTTCTAGACTTCCGATGCCAGTCCTGAGGCCAGCGATGATGCGGCCATACTaGCCGAAAGCGGTTTCGAGG	+
Preference number: 5 (lower is better) Translates to: QETDSSFSRLPMPVLRPAMMRPY*PKAVSR Trigger: CCTCGAAACCGCTTTCGGCAAGTATGGCCGCATCAT...CGCTGGCCTCAGGACTGGCATCGGAAGTCTAGAAAAAGAAGAATCAGTTTCCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098135.2
CDS GCA 72 bp	TACCCACGCGCTCACGGCCACTCGAGTAGCGCTCGCTaGGGTAGCTGTCGCGGCCGCCATAGCCGTCGGGCG	+
Preference number: 6 (lower is better) Translates to: YPRAHGHSSSAR*GSCRGRHSRRA Trigger: CGCCCGACGGCTATGGCGGCCGCGACAGCTACCGCAGCGAGCGCTACTCGAGTGGCCGTGAGCGCGTGGGTA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098135.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu