Pregenerated sensors for RBMX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031134Ensembl transcript IDs: ENSMUST00000098470.9, ENSMUST00000114726.8, ENSMUST00000114730.8, ENSMUST00000140384.8
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCGCACTGGGTAAGCAACTGCTGTGGCTTAGTCTCAGCGTTCCTCTaGTTCAGCAACTCTGAGCATCTGATTGTTCCTTACTGCCAGCTT | + |
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Preference number: 1 (lower is better) Translates to: AHWVSNCCGLVSAFL*FSNSEHLIVPYCQL Trigger: AAGCTGGCAGTAAGGAACAATCAGATGCTCAGAGTTGCTGAAGCAGAGGAACGCTGAGACTAAGCCACAGCAGTTGCTTACCCAGTGCGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| 3UTR TCA 90 bp | GGTATAATTTTTCTGACTGAAATGTTTGTGTGTCCTGCCAGGGGTTaGATGCTAGCCTCACTGGTGCTTAGGCAAGCACTCACCATGGAG | + |
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Preference number: 1 (lower is better) Translates to: GIIFLTEMFVCPARG*MLASLVLRQALTME Trigger: CTCCATGGTGAGTGCTTGCCTAAGCACCAGTGAGGCTAGCATTCAACCCCTGGCAGGACACACAAACATTTCAGTCAGAAAAATTATACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| 3UTR GCA 90 bp | GGGTTTCTGGGTAAACAGTACATCCTAGGCATCGGAGCTCAGGTTTaGTCGTTGGTTTTAATATATATACTGCGAAGATTGAGATTTCAG | + |
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Preference number: 1 (lower is better) Translates to: GFLGKQYILGIGAQV*SLVLIYILRRLRFQ Trigger: CTGAAATCTCAATCTTCGCAGTATATATATTAAAACCAACGAGCAAACCTGAGCTCCGATGCCTAGGATGTACTGTTTACCCAGAAACCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| 3UTR CAA 90 bp | AATACTGAAAGTAGCACACCCAACCAACCCTCTCTAATGGCTAGCTaGTCTGCACAGGCAGGGCGATTCAGCTCTCAGTGGAGACCAGAG | + |
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Preference number: 2 (lower is better) Translates to: NTESSTPNQPSLMAS*SAQAGRFSSQWRPE Trigger: CTCTGGTCTCCACTGAGAGCTGAATCGCCCTGCCTGTGCAGACAAGCTAGCCATTAGAGAGGGTTGGTTGGGTGTGCTACTTTCAGTATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| 3UTR-3UTR GCA 90 bp | ATGGAGTTACAGCCCCAGCTCATTCAATGTTCTTCTCTCAGTGATCATCAGCTCCACTGGGTAAGCAACTaGTGTGGCTTAGTCTCAGCG | + |
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Preference number: 2 (lower is better) Translates to: MELQPQLIQCSSLSDHQLHWVSN*CGLVSA Trigger: CGCTGAGACTAAGCCACAGCAGTTGCTTACCCAGTG...GAGCTGATGATCACTGAGAGAAGAACATTGAATGAGCTGGGGCTGTAACTCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| 3UTR-3UTR TCA 90 bp | AGGCATCACTGTACTATGAGGAAGGTAAGTGCTCAATTTCGACTTAGACGGAAACTACCATTTGCTTGTTaGAAGCAGCTCATACTAGCA | + |
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Preference number: 2 (lower is better) Translates to: RHHCTMRKVSAQFRLRRKLPFAC*KQLILA Trigger: TGCTAGTATGAGCTGCTTTCAACAAGCAAATGGTAG...TTTCCGTCTAAGTCGAAATTGAGCACTTACCTTCCTCATAGTACAGTGATGCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098470.9 |
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| 3UTR CAA 90 bp | TGTAACAAATTCGTAAGAAAAATCTCACAAGTGGAGTTAAATTCTTaGACTCTAAAACTCAACCCGCTTCTGTTGAGATTATCTGCGTTC | + |
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Preference number: 2 (lower is better) Translates to: CNKFVRKISQVELNS*TLKLNPLLLRLSAF Trigger: GAACGCAGATAATCTCAACAGAAGCGGGTTGAGTTTTAGAGTCAAAGAATTTAACTCCACTTGTGAGATTTTTCTTACGAATTTGTTACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| 3UTR GCA 72 bp | TACCAAACCAATTCTGATGCGCACTGGGTAAGCAACTaGTGTGGCTTAGTCTCAGCGTTCCTCTGCTTCAGC | + |
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Preference number: 3 (lower is better) Translates to: YQTNSDAHWVSN*CGLVSAFLCFS Trigger: GCTGAAGCAGAGGAACGCTGAGACTAAGCCACAGCAGTTGCTTACCCAGTGCGCATCAGAATTGGTTTGGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| 3UTR TCA 72 bp | TTTCTGACTGAAATGTTTGTGTGTCCTGCCAGGGGTTaGATGCTAGCCTCACTGGTGCTTAGGCAAGCACTC | + |
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Preference number: 3 (lower is better) Translates to: FLTEMFVCPARG*MLASLVLRQAL Trigger: GAGTGCTTGCCTAAGCACCAGTGAGGCTAGCATTCAACCCCTGGCAGGACACACAAACATTTCAGTCAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| 3UTR-3UTR CAA 90 bp | AGGCATCACTGTACTATGAGGAAGGTAAGTGCTCAATTTCGACTTAGACGGAAAAGAAAGTTTCCACTTTaGTTTGTTGCTTTGAATGGG | + |
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Preference number: 3 (lower is better) Translates to: RHHCTMRKVSAQFRLRRKRKFPL*FVALNG Trigger: CCCATTCAAAGCAACAAACAAAAGTGGAAACTTTCT...TTTCCGTCTAAGTCGAAATTGAGCACTTACCTTCCTCATAGTACAGTGATGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098470.9 |
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| 3UTR-3UTR CAA 90 bp | AGCTCAGGTTTGCTCGTTGGTTTTAATATATATACTGCGAAGATTGAGATTTCATCTACCATTTGCTTGTaGAAAGCAGCTCATACTAGC | + |
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Preference number: 3 (lower is better) Translates to: SSGLLVGFNIYTAKIEISSTICL*KAAHTS Trigger: GCTAGTATGAGCTGCTTTCAACAAGCAAATGGTAGA...TGAAATCTCAATCTTCGCAGTATATATATTAAAACCAACGAGCAAACCTGAGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| 3UTR-3UTR CAA 90 bp | AGCTCAGGTTTGCTCGTTGGTTTTAATATATATACTGCGAAGATTGAGATTTCATCACACATCTACCATTaGCTTGTTGAAAGCAGCTCA | + |
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Preference number: 3 (lower is better) Translates to: SSGLLVGFNIYTAKIEISSHIYH*LVESSS Trigger: TGAGCTGCTTTCAACAAGCAAATGGTAGATGTGTGA...TGAAATCTCAATCTTCGCAGTATATATATTAAAACCAACGAGCAAACCTGAGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| 3UTR-3UTR CAA 90 bp | AGCTCAGGTTTGCTCGTTGGTTTTAATATATATACTGCGAAGATTGAGATTTCAAGAAAGTTTCCACTTTaGTTTGTTGCTTTGAATGGG | + |
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Preference number: 3 (lower is better) Translates to: SSGLLVGFNIYTAKIEISRKFPL*FVALNG Trigger: CCCATTCAAAGCAACAAACAAAAGTGGAAACTTTCT...TGAAATCTCAATCTTCGCAGTATATATATTAAAACCAACGAGCAAACCTGAGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| 3UTR TCA 72 bp | GATGAGGCAAAATTCATCAAATGGGTCAGACATGAGTaGGGTATAATTTTTCTGACTGAAATGTTTGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: DEAKFIKWVRHE*GIIFLTEMFVC Trigger: ACACACAAACATTTCAGTCAGAAAAATTATACCTCACTCATGTCTGACCCATTTGATGAATTTTGCCTCATC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| CDS-3UTR TCA 90 bp | CAGCTCTCAGTGGAGACCAGAGGCCATCTAGATGGCTGGAAGTTTGTGGATGATTGGCTTGCTCCACCTTaGTGGCTTTCCCATCTAAGG | + |
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Preference number: 4 (lower is better) Translates to: QLSVETRGHLDGWKFVDDWLAPP*WLSHLR Trigger: CCTTAGATGGGAAAGCCATCAAGGTGGAGCAAGCCA...ATCATCCACAAACTTCCAGCCATCTAGATGGCCTCTGGTCTCCACTGAGAGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| CDS-3UTR TCA 90 bp | GGCTTAGTCTCAGCGTTCCTCTGCTTCAGCAACTCTGAGCATCTGATTGTTCCTTGGCTTGCTCCACCTTaGTGGCTTTCCCATCTAAGG | + |
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Preference number: 4 (lower is better) Translates to: GLVSAFLCFSNSEHLIVPWLAPP*WLSHLR Trigger: CCTTAGATGGGAAAGCCATCAAGGTGGAGCAAGCCA...AGGAACAATCAGATGCTCAGAGTTGCTGAAGCAGAGGAACGCTGAGACTAAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| CDS-3UTR GCA 90 bp | GCGATTCAGCTCTCAGTGGAGACCAGAGGCCATCTAGATGGCTGGAAGTTTGTGATCTCTTGGTGGTGGTaGATAATCTCGTGTATCTCG | + |
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Preference number: 4 (lower is better) Translates to: AIQLSVETRGHLDGWKFVISWWW*IISCIS Trigger: CGAGATACACGAGATTATGCACCACCACCAAGAGAT...CACAAACTTCCAGCCATCTAGATGGCCTCTGGTCTCCACTGAGAGCTGAATCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| CDS-3UTR GCA 90 bp | CAGCTCTCAGTGGAGACCAGAGGCCATCTAGATGGCTGGAAGTTTGTGGATGATATCTCTTGGTGGTGGTaGATAATCTCGTGTATCTCG | + |
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Preference number: 4 (lower is better) Translates to: QLSVETRGHLDGWKFVDDISWWW*IISCIS Trigger: CGAGATACACGAGATTATGCACCACCACCAAGAGAT...ATCATCCACAAACTTCCAGCCATCTAGATGGCCTCTGGTCTCCACTGAGAGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| CDS-3UTR GCA 90 bp | GGCTTAGTCTCAGCGTTCCTCTGCTTCAGCAACTCTGAGCATCTGATTGTTCCTATCTCTTGGTGGTGGTaGATAATCTCGTGTATCTCG | + |
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Preference number: 4 (lower is better) Translates to: GLVSAFLCFSNSEHLIVPISWWW*IISCIS Trigger: CGAGATACACGAGATTATGCACCACCACCAAGAGAT...AGGAACAATCAGATGCTCAGAGTTGCTGAAGCAGAGGAACGCTGAGACTAAGCC 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| CDS-3UTR CCA 90 bp | GCGATTCAGCTCTCAGTGGAGACCAGAGGCCATCTAGATGGCTGGAAGTTTGTGATCCTTTGCATCTGCTaGGCTTTCAAAAGTGACAAA | + |
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Preference number: 4 (lower is better) Translates to: AIQLSVETRGHLDGWKFVILCIC*AFKSDK Trigger: TTTGTCACTTTTGAAAGCCCAGCAGATGCAAAGGAT...CACAAACTTCCAGCCATCTAGATGGCCTCTGGTCTCCACTGAGAGCTGAATCGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| CDS-3UTR CCA 90 bp | CAGCTCTCAGTGGAGACCAGAGGCCATCTAGATGGCTGGAAGTTTGTGGATGATATCCTTTGCATCTGCTaGGCTTTCAAAAGTGACAAA | + |
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Preference number: 4 (lower is better) Translates to: QLSVETRGHLDGWKFVDDILCIC*AFKSDK Trigger: TTTGTCACTTTTGAAAGCCCAGCAGATGCAAAGGAT...ATCATCCACAAACTTCCAGCCATCTAGATGGCCTCTGGTCTCCACTGAGAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| CDS-3UTR CCA 90 bp | GGCTTAGTCTCAGCGTTCCTCTGCTTCAGCAACTCTGAGCATCTGATTGTTCCTATCCTTTGCATCTGCTaGGCTTTCAAAAGTGACAAA | + |
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Preference number: 4 (lower is better) Translates to: GLVSAFLCFSNSEHLIVPILCIC*AFKSDK Trigger: TTTGTCACTTTTGAAAGCCCAGCAGATGCAAAGGAT...AGGAACAATCAGATGCTCAGAGTTGCTGAAGCAGAGGAACGCTGAGACTAAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| CDS-3UTR TCA 90 bp | GCTCAGGTTTGCTCGTTGGTTTTAATATATATACTGCGAAGATTGAGATTTCAGTGGCTTGCTCCACCTTaGTGGCTTTCCCATCTAAGG | + |
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Preference number: 4 (lower is better) Translates to: AQVCSLVLIYILRRLRFQWLAPP*WLSHLR Trigger: CCTTAGATGGGAAAGCCATCAAGGTGGAGCAAGCCA...CTGAAATCTCAATCTTCGCAGTATATATATTAAAACCAACGAGCAAACCTGAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| 3UTR CAA 72 bp | CAATATGTTTTCCTAACTAGCCTAACGTTGCCAGTTTaGACTTTCATTTCCCAGCACTGTTCTTCCCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QYVFLTSLTLPV*TFISQHCSSPS Trigger: AGAAGGGGAAGAACAGTGCTGGGAAATGAAAGTCAAAACTGGCAACGTTAGGCTAGTTAGGAAAACATATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| CDS-3UTR CCA 90 bp | TTTCTCAACTGGGAAGTTTTAAACTCTACCATTGCTGGCCATAAGAGGGAATTGATCCTTTGCATCTGCTaGGCTTTCAAAAGTGACAAA | + |
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Preference number: 4 (lower is better) Translates to: FLNWEVLNSTIAGHKRELILCIC*AFKSDK Trigger: TTTGTCACTTTTGAAAGCCCAGCAGATGCAAAGGAT...CAATTCCCTCTTATGGCCAGCAATGGTAGAGTTTAAAACTTCCCAGTTGAGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098470.9 |
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| 3UTR CAA 72 bp | CAGTACATCCTAGGCATCGGAGCTCAGGTTTGCTCGTaGGTTTTAATATATATACTGCGAAGATTGAGATTT | + |
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Preference number: 4 (lower is better) Translates to: QYILGIGAQVCS*VLIYILRRLRF Trigger: AAATCTCAATCTTCGCAGTATATATATTAAAACCAACGAGCAAACCTGAGCTCCGATGCCTAGGATGTACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| 3UTR CAA 72 bp | TTCGTAAGAAAAATCTCACAAGTGGAGTTAAATTCTTaGACTCTAAAACTCAACCCGCTTCTGTTGAGATTA | + |
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Preference number: 4 (lower is better) Translates to: FVRKISQVELNS*TLKLNPLLLRL Trigger: TAATCTCAACAGAAGCGGGTTGAGTTTTAGAGTCAAAGAATTTAACTCCACTTGTGAGATTTTTCTTACGAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| CDS-3UTR CAA 90 bp | CTAATGGCTAGCTTGTCTGCACAGGCAGGGCGATTCAGCTCTCAGTGGAGACCAGTGGCTTGCTCCACCTaGATGGCTTTCCCATCTAAG | + |
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Preference number: 5 (lower is better) Translates to: LMASLSAQAGRFSSQWRPVACST*MAFPSK Trigger: CTTAGATGGGAAAGCCATCAAGGTGGAGCAAGCCAC...TGGTCTCCACTGAGAGCTGAATCGCCCTGCCTGTGCAGACAAGCTAGCCATTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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| CDS-3UTR CAA 90 bp | ATGGAGTTACAGCCCCAGCTCATTCAATGTTCTTCTCTCAGTGATCATCAGCTCGTGGCTTGCTCCACCTaGATGGCTTTCCCATCTAAG | + |
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Preference number: 5 (lower is better) Translates to: MELQPQLIQCSSLSDHQLVACST*MAFPSK Trigger: CTTAGATGGGAAAGCCATCAAGGTGGAGCAAGCCAC...GAGCTGATGATCACTGAGAGAAGAACATTGAATGAGCTGGGGCTGTAACTCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140384.8 |
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| CDS-3UTR CAA 90 bp | AAAAATCAGGAAGTGGCTGGCCTTCAGGGACACTTTCACTTGGAAAATTACAACGTGGCTTGCTCCACCTaGATGGCTTTCCCATCTAAG | + |
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Preference number: 5 (lower is better) Translates to: KNQEVAGLQGHFHLENYNVACST*MAFPSK Trigger: CTTAGATGGGAAAGCCATCAAGGTGGAGCAAGCCAC...GTTGTAATTTTCCAAGTGAAAGTGTCCCTGAAGGCCAGCCACTTCCTGATTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000098470.9 ENSMUST00000114726.8 ENSMUST00000114730.8 |
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