Pregenerated sensors for RBMS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026970Ensembl transcript IDs: ENSMUST00000028347.13, ENSMUST00000112509.2, ENSMUST00000164147.8
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTGAGAGTCTTGGGCTGATCAACATACTCGATCCACGGAGGGTGTaGTGCCTTCAGTCTGGACTTCACAAAGCACAAGTTTTAGGGAGC | + |
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Preference number: 1 (lower is better) Translates to: SESLGLINILDPRRV*CLQSGLHKAQVLGS Trigger: GCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAGGCAGCACACCCTCCGTGGATCGAGTATGTTGATCAGCCCAAGACTCTCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| 3UTR GCA 90 bp | GAGAGTCTTGGGCTGATCAACATACTCGATCCACGGAGGGTGTGCTaGCTTCAGTCTGGACTTCACAAAGCACAAGTTTTAGGGAGCATA | + |
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Preference number: 1 (lower is better) Translates to: ESLGLINILDPRRVC*LQSGLHKAQVLGSI Trigger: TATGCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAGGCAGCACACCCTCCGTGGATCGAGTATGTTGATCAGCCCAAGACTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| 3UTR-3UTR CCA 90 bp | GGGCTGATCAACATACTCGATCCACGGAGGGTGTGCTGCCTTCAGTCTGGACTTCAATCGTTTTCCTTCTaGTCATATCTCAGCTTAGGT | + |
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Preference number: 2 (lower is better) Translates to: GLINILDPRRVCCLQSGLQSFSF*SYLSLG Trigger: ACCTAAGCTGAGATATGACCAGAAGGAAAACGATTG...AAGTCCAGACTGAAGGCAGCACACCCTCCGTGGATCGAGTATGTTGATCAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| 3UTR-3UTR TCA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGACGGGACACCATGGGTaGAGTCGGACAATTGAAACT | + |
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Preference number: 2 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMTGHHG*SRTIET Trigger: AGTTTCAATTGTCCGACTTCACCCATGGTGTCCCGT...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGGCTCGTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTCATTTGTTCTGCTGCTTACAAGGTaGACTAGACCAGCCCATTTG | + |
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Preference number: 2 (lower is better) Translates to: TGSSVFGEVTFKSAKSFVLLLTR*TRPAHL Trigger: CAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAG...AACAAATGACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGACGAGCCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| 3UTR GCA 72 bp | CTTGGGCTGATCAACATACTCGATCCACGGAGGGTGTaGTGCCTTCAGTCTGGACTTCACAAAGCACAAGTT | + |
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Preference number: 3 (lower is better) Translates to: LGLINILDPRRV*CLQSGLHKAQV Trigger: AACTTGTGCTTTGTGAAGTCCAGACTGAAGGCAGCACACCCTCCGTGGATCGAGTATGTTGATCAGCCCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| 3UTR GCA 72 bp | GGGCTGATCAACATACTCGATCCACGGAGGGTGTGCTaGCTTCAGTCTGGACTTCACAAAGCACAAGTTTTA | + |
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Preference number: 3 (lower is better) Translates to: GLINILDPRRVC*LQSGLHKAQVL Trigger: TAAAACTTGTGCTTTGTGAAGTCCAGACTGAAGGCAGCACACCCTCCGTGGATCGAGTATGTTGATCAGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| 3UTR-3UTR CAA 90 bp | GGGCTGATCAACATACTCGATCCACGGAGGGTGTGCTGCCTTCAGTCTGGACTTAATTCACCATTGCTTTaGAAAACGTATGCAACTGCC | + |
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Preference number: 3 (lower is better) Translates to: GLINILDPRRVCCLQSGLNSPLL*KTYATA Trigger: GGCAGTTGCATACGTTTTCAAAAGCAATGGTGAATT...AAGTCCAGACTGAAGGCAGCACACCCTCCGTGGATCGAGTATGTTGATCAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| 3UTR CCA 72 bp | CATACTCGATCCACGGAGGGTGTGCTGCCTTCAGTCTaGACTTCACAAAGCACAAGTTTTAGGGAGCATAAA | + |
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Preference number: 3 (lower is better) Translates to: HTRSTEGVLPSV*TSQSTSFREHK Trigger: TTTATGCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAGGCAGCACACCCTCCGTGGATCGAGTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| 3UTR CCA 72 bp | GAGAGAGAGAGAGCTCGTAGCCAATCGTTTTCCTTCTaGTCATATCTCAGCTTAGGTTTGAAGAGAAATCCT | + |
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Preference number: 3 (lower is better) Translates to: ERERARSQSFSF*SYLSLGLKRNP Trigger: AGGATTTCTCTTCAAACCTAAGCTGAGATATGACCAGAAGGAAAACGATTGGCTACGAGCTCTCTCTCTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR GCA 90 bp | AAAGCCCTAGGCTGCTGCTTACAAGGTGCACTAGACCAGCCCATTTGGTCAAAGTGGGGCCATGGGGTGTaGTGGGACCAGAGACTGCTG | + |
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Preference number: 4 (lower is better) Translates to: KALGCCLQGALDQPIWSKWGHGV*WDQRLL Trigger: CAGCAGTCTCTGGTCCCAGCACACCCCATGGCCCCA...CTTTGACCAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAGCCTAGGGCTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | GGGCTGATCAACATACTCGATCCACGGAGGGTGTGCTGCCTTCAGTCTGGACTTTGTTATTACTGCTGGTaGTGCTGGGACTGGGTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: GLINILDPRRVCCLQSGLCYYCW*CWDWVG Trigger: CCCCACCCAGTCCCAGCACCACCAGCAGTAATAACA...AAGTCCAGACTGAAGGCAGCACACCCTCCGTGGATCGAGTATGTTGATCAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR TCA 90 bp | GGGCTGATCAACATACTCGATCCACGGAGGGTGTGCTGCCTTCAGTCTGGACTTTTTGTCTTGCTCAGCTaGTCCCATCCTGAGTTGCTA | + |
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Preference number: 4 (lower is better) Translates to: GLINILDPRRVCCLQSGLFVLLS*SHPELL Trigger: TAGCAACTCAGGATGGGATCAGCTGAGCAAGACAAA...AAGTCCAGACTGAAGGCAGCACACCCTCCGTGGATCGAGTATGTTGATCAGCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR GCA 90 bp | AAAGCCCTAGGCTGCTGCTTACAAGGTGCACTAGACCAGCCCATTTGGTCAAAGCTCTCTGGTTTCCTTTaGCACCTGGTAGGCAGATAC | + |
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Preference number: 4 (lower is better) Translates to: KALGCCLQGALDQPIWSKLSGFL*HLVGRY Trigger: GTATCTGCCTACCAGGTGGCAAAGGAAACCAGAGAG...CTTTGACCAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAGCCTAGGGCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATGGTGCTGGGACTGGGTaGGGCCATGGGGTGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KQFSLLALHYLTRYVKNHGAGTG*GHGVCW Trigger: CCAGCACACCCCATGGCCCCACCCAGTCCCAGCACC...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | AAAGCCCTAGGCTGCTGCTTACAAGGTGCACTAGACCAGCCCATTTGGTCAAAGCACGATCTTCCCATATaGTTGGCAGAGCTTCACCAG | + |
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Preference number: 4 (lower is better) Translates to: KALGCCLQGALDQPIWSKHDLPI*LAELHQ Trigger: CTGGTGAAGCTCTGCCAACCATATGGGAAGATCGTG...CTTTGACCAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAGCCTAGGGCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR GCA 90 bp | AAAGCCCTAGGCTGCTGCTTACAAGGTGCACTAGACCAGCCCATTTGGTCAAAGTACTGTTGTTATTACTaGTGGTGGTGCTGGGACTGG | + |
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Preference number: 4 (lower is better) Translates to: KALGCCLQGALDQPIWSKYCCYY*WWCWDW Trigger: CCAGTCCCAGCACCACCAGCAGTAATAACAACAGTA...CTTTGACCAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAGCCTAGGGCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR GCA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGGTCTCCACAGCCACCTaGTGCTGGCCACTTGCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMVSTAT*CWPLAS Trigger: GGAAGCAAGTGGCCAGCAGCAGGTGGCTGTGGAGAC...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATGACTGGGTGGGGCCATaGGGTGTGCTGGGACCAGAG | + |
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Preference number: 4 (lower is better) Translates to: KQFSLLALHYLTRYVKNHDWVGP*GVLGPE Trigger: CTCTGGTCCCAGCACACCCCATGGCCCCACCCAGTC...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | AAAGCCCTAGGCTGCTGCTTACAAGGTGCACTAGACCAGCCCATTTGGTCAAAGATCTTCCCATATGGTTaGCAGAGCTTCACCAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: KALGCCLQGALDQPIWSKIFPYG*QSFTRS Trigger: AGACCTGGTGAAGCTCTGCCAACCATATGGGAAGAT...CTTTGACCAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAGCCTAGGGCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGGGCCATGGGGTGTGCTaGGACCAGAGACTGCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMGHGVC*DQRLLL Trigger: AAGCAGCAGTCTCTGGTCCCAGCACACCCCATGGCC...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000164147.8 |
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| CDS-3UTR GCA 90 bp | ACTGGCTCGTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTCATTTGTTTATTACTGCTGGTGGTaGTGGGACTGGGTGGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: TGSSVFGEVTFKSAKSFVYYCWW*WDWVGP Trigger: TGGCCCCACCCAGTCCCAGCACCACCAGCAGTAATA...AACAAATGACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGACGAGCCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR GCA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTATTACTGCTGGTGGTaGTGGGACTGGGTGGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMYYCWW*WDWVGP Trigger: TGGCCCCACCCAGTCCCAGCACCACCAGCAGTAATA...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR GCA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATCTGCTGCTGGCCACTTaGTTCCTCAACGGGCACCGC | + |
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Preference number: 4 (lower is better) Translates to: KQFSLLALHYLTRYVKNHLLLAT*FLNGHR Trigger: GCGGTGCCCGTTGAGGAAGCAAGTGGCCAGCAGCAG...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR GCA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATCCAGAGACTGCTGCTTaGGGTAGGGCGTCCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: KQFSLLALHYLTRYVKNHPETAA*GRASCS Trigger: GCTGCAGGACGCCCTACCGCAAGCAGCAGTCTCTGG...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | AAAGCCCTAGGCTGCTGCTTACAAGGTGCACTAGACCAGCCCATTTGGTCAAAGGATACTTGTTCTCTCTaGTTTCCTTTGCCACCTGGT | + |
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Preference number: 4 (lower is better) Translates to: KALGCCLQGALDQPIWSKDTCSL*FPLPPG Trigger: ACCAGGTGGCAAAGGAAACCAGAGAGAACAAGTATC...CTTTGACCAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAGCCTAGGGCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164147.8 |
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| 3UTR CAA 72 bp | GATAGGTGGAGCTGCTGGCTACTGGCTCGTCGGTCTTaGGTGAAGTTACCTTTAAAAGTGCCAAGTCATTTG | + |
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Preference number: 4 (lower is better) Translates to: DRWSCWLLARRS*VKLPLKVPSHL Trigger: CAAATGACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGACGAGCCAGTAGCCAGCAGCTCCACCTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR TCA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGGCTGAGCCAGAGGGCTaGTCATGGAAGCAGGTTGTA | + |
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Preference number: 4 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMAEPEG*SWKQVV Trigger: TACAACCTGCTTCCATGATCAGCCCTCTGGCTCAGC...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR GCA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATTGGGGCCATGGGGTGTaGTGGGACCAGAGACTGCTT | + |
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Preference number: 4 (lower is better) Translates to: KQFSLLALHYLTRYVKNHWGHGV*WDQRLL Trigger: AAGCAGTCTCTGGTCCCAGCACACCCCATGGCCCCA...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR GCA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGATCCAAGAGGGGCTCTaGACCTTGATAGCAGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMIQEGL*TLIAEP Trigger: GGGCTCTGCTATCAAGGTGCAGAGCCCCTCTTGGAT...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGGGACCAGAGACTGCTTaGCTTGCAGATACTGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMGPETA*LADTGG Trigger: ACCCCCAGTATCTGCAAGCCAAGCAGTCTCTGGTCC...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR CCA 90 bp | CTTCAGTCTGGACTTCACAAAGCACAAGTTTTAGGGAGCATAAAACCAATAATATACTGCTGGTGGTGCTaGGACTGGGTGGGGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: LQSGLHKAQVLGSIKPIIYCWWC*DWVGPW Trigger: CCATGGCCCCACCCAGTCCCAGCACCACCAGCAGTA...TATTATTGGTTTTATGCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR CCA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGTTATTACTGCTGGTaGTGCTGGGACTGGGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMCYYCW*CWDWVG Trigger: CCCCACCCAGTCCCAGCACCACCAGCAGTAATAACA...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | AAAGCCCTAGGCTGCTGCTTACAAGGTGCACTAGACCAGCCCATTTGGTCAAAGAACCTTTGCACTTGTTaGTGGCCTTATCCAAAATCG | + |
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Preference number: 4 (lower is better) Translates to: KALGCCLQGALDQPIWSKNLCTC*WPYPKS Trigger: CGATTTTGGATAAGGCCACCAACAAGTGCAAAGGTT...CTTTGACCAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAGCCTAGGGCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR GCA 90 bp | AAAGCCCTAGGCTGCTGCTTACAAGGTGCACTAGACCAGCCCATTTGGTCAAAGATCCTGAGTTGCTACTaGTGCTACTGTTGTTATTAC | + |
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Preference number: 4 (lower is better) Translates to: KALGCCLQGALDQPIWSKILSCY*CYCCYY Trigger: GTAATAACAACAGTAGCAGCAGTAGCAACTCAGGAT...CTTTGACCAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAGCCTAGGGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR GCA 90 bp | CTTCAGTCTGGACTTCACAAAGCACAAGTTTTAGGGAGCATAAAACCAATAATAGTCTCCACAGCCACCTaGTGCTGGCCACTTGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: LQSGLHKAQVLGSIKPIIVSTAT*CWPLAS Trigger: GGAAGCAAGTGGCCAGCAGCAGGTGGCTGTGGAGAC...TATTATTGGTTTTATGCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR CCA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATCACGGCTGGCACCACTaGAATCACGTAGGACCCTTG | + |
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Preference number: 4 (lower is better) Translates to: KQFSLLALHYLTRYVKNHHGWHH*NHVGPL Trigger: CAAGGGTCCTACGTGATTCCAGTGGTGCCAGCCGTG...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR TCA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATGCTGAGCCAGAGGGCTaGTCATGGAAGCAGGTTGTA | + |
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Preference number: 4 (lower is better) Translates to: KQFSLLALHYLTRYVKNHAEPEG*SWKQVV Trigger: TACAACCTGCTTCCATGATCAGCCCTCTGGCTCAGC...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | ACTGGCTCGTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTCATTTGTTGGGGGTAGTAATAGGTaGCGTACTGAGGGTACATCT | + |
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Preference number: 4 (lower is better) Translates to: TGSSVFGEVTFKSAKSFVGGSNR*RTEGTS Trigger: AGATGTACCCTCAGTACGCCACCTATTACTACCCCC...AACAAATGACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGACGAGCCAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR CCA 90 bp | ACTGGCTCGTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTCATTTGTTTGTTGTTATTACTGCTaGTGGTGCTGGGACTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: TGSSVFGEVTFKSAKSFVCCYYC*WCWDWV Trigger: CACCCAGTCCCAGCACCACCAGCAGTAATAACAACA...AACAAATGACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGACGAGCCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR CCA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGTTGTTATTACTGCTaGTGGTGCTGGGACTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMCCYYC*WCWDWV Trigger: CACCCAGTCCCAGCACCACCAGCAGTAATAACAACA...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | CTTCAGTCTGGACTTCACAAAGCACAAGTTTTAGGGAGCATAAAACCAATAATACACGGCTGGCACCACTaGAATCACGTAGGACCCTTG | + |
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Preference number: 4 (lower is better) Translates to: LQSGLHKAQVLGSIKPIIHGWHH*NHVGPL Trigger: CAAGGGTCCTACGTGATTCCAGTGGTGCCAGCCGTG...TATTATTGGTTTTATGCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR TCA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTTTGTCTTGCTCAGCTaGTCCCATCCTGAGTTGCTA | + |
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Preference number: 4 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMFVLLS*SHPELL Trigger: TAGCAACTCAGGATGGGATCAGCTGAGCAAGACAAA...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGATCTTCCCATATGGTTaGCAGAGCTTCACCAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMIFPYG*QSFTRS Trigger: AGACCTGGTGAAGCTCTGCCAACCATATGGGAAGAT...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR GCA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGATATTTTCAAGTTCCTaGTCATCCATGGACAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMIFSSS*SSMDSG Trigger: GCCGCTGTCCATGGATGAGCAGGAACTTGAAAATAT...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | CTTCAGTCTGGACTTCACAAAGCACAAGTTTTAGGGAGCATAAAACCAATAATACACGATCTTCCCATATaGTTGGCAGAGCTTCACCAG | + |
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Preference number: 4 (lower is better) Translates to: LQSGLHKAQVLGSIKPIIHDLPI*LAELHQ Trigger: CTGGTGAAGCTCTGCCAACCATATGGGAAGATCGTG...TATTATTGGTTTTATGCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR GCA 90 bp | CTTCAGTCTGGACTTCACAAAGCACAAGTTTTAGGGAGCATAAAACCAATAATATACTGTTGTTATTACTaGTGGTGGTGCTGGGACTGG | + |
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Preference number: 4 (lower is better) Translates to: LQSGLHKAQVLGSIKPIIYCCYY*WWCWDW Trigger: CCAGTCCCAGCACCACCAGCAGTAATAACAACAGTA...TATTATTGGTTTTATGCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR GCA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATATATTTTCAAGTTCCTaGTCATCCATGGACAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: KQFSLLALHYLTRYVKNHIFSSS*SSMDSG Trigger: GCCGCTGTCCATGGATGAGCAGGAACTTGAAAATAT...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATCTTTGCACTTGTTGGTaGCCTTATCCAAAATCGCCT | + |
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Preference number: 4 (lower is better) Translates to: KQFSLLALHYLTRYVKNHLCTCW*PYPKSP Trigger: AGGCGATTTTGGATAAGGCCACCAACAAGTGCAAAG...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CCA 90 bp | CTTCAGTCTGGACTTCACAAAGCACAAGTTTTAGGGAGCATAAAACCAATAATACTTTGCACTTGTTGGTaGCCTTATCCAAAATCGCCT | + |
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Preference number: 4 (lower is better) Translates to: LQSGLHKAQVLGSIKPIILCTCW*PYPKSP Trigger: AGGCGATTTTGGATAAGGCCACCAACAAGTGCAAAG...TATTATTGGTTTTATGCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR CCA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATAACCTTTGCACTTGTTaGTGGCCTTATCCAAAATCG | + |
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Preference number: 4 (lower is better) Translates to: KQFSLLALHYLTRYVKNHNLCTC*WPYPKS Trigger: CGATTTTGGATAAGGCCACCAACAAGTGCAAAGGTT...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR GCA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATCAAAACCATAACCTTTaGACTTGTTGGTGGCCTTAT | + |
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Preference number: 4 (lower is better) Translates to: KQFSLLALHYLTRYVKNHQNHNL*TCWWPY Trigger: ATAAGGCCACCAACAAGTGCAAAGGTTATGGTTTTG...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR GCA 90 bp | CTTCAGTCTGGACTTCACAAAGCACAAGTTTTAGGGAGCATAAAACCAATAATAATCCTGAGTTGCTACTaGTGCTACTGTTGTTATTAC | + |
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Preference number: 4 (lower is better) Translates to: LQSGLHKAQVLGSIKPIIILSCY*CYCCYY Trigger: GTAATAACAACAGTAGCAGCAGTAGCAACTCAGGAT...TATTATTGGTTTTATGCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS CCA 90 bp | ACTGCTGCTACTGTTGTTATTACTGCTGGTGGTGCTGGGACTGGGTaGGGCCATGGGGTGTGCTGGGACCAGAGACTGCTTGGCTTGCAG | + |
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Preference number: 5 (lower is better) Translates to: TAATVVITAGGAGTG*GHGVCWDQRLLGLQ Trigger: CTGCAAGCCAAGCAGTCTCTGGTCCCAGCACACCCCATGGCCCCACCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS CCA 90 bp | ACTGCTGCTACTGTTGTTATTACTGCTGGTGGTGCTGGGACTGGGTaGGGCCATGGGGTGTGCTGGGACCAGAGACTGCTGCTTGCGGTA | + |
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Preference number: 5 (lower is better) Translates to: TAATVVITAGGAGTG*GHGVCWDQRLLLAV Trigger: TACCGCAAGCAGCAGTCTCTGGTCCCAGCACACCCCATGGCCCCACCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164147.8 |
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| CDS CCA 90 bp | TACTGTTGTTATTACTGCTGGTGGTGCTGGGACTGGGTGGGGCCATaGGGTGTGCTGGGACCAGAGACTGCTTGGCTTGCAGATACTGGG | + |
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Preference number: 5 (lower is better) Translates to: YCCYYCWWCWDWVGP*GVLGPETAWLADTG Trigger: CCCAGTATCTGCAAGCCAAGCAGTCTCTGGTCCCAGCACACCCCATGGCCCCACCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS TCA 90 bp | ATTGAGGGAGTTAACACGGCACCAGGATGCTGCAGAATGTACGGCTaGGGCTGCATCCAAGAGGGGCTCTGCACCTTGATAGCAGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: IEGVNTAPGCCRMYG*GCIQEGLCTLIAEP Trigger: GGGCTCTGCTATCAAGGTGCAGAGCCCCTCTTGGATGCAGCCTCAGCCGTACATTCTGCAGCATCCTGGTGCCGTGTTAACTCCCTCAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112509.2 ENSMUST00000164147.8 |
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| CDS-3UTR CAA 90 bp | AAAGCCCTAGGCTGCTGCTTACAAGGTGCACTAGACCAGCCCATTTGGTCAAAGGAGGGGCTCTGCACCTaGATAGCAGAGCCCCGATAC | + |
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Preference number: 5 (lower is better) Translates to: KALGCCLQGALDQPIWSKEGLCT*IAEPRY Trigger: GTATCGGGGCTCTGCTATCAAGGTGCAGAGCCCCTC...CTTTGACCAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAGCCTAGGGCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164147.8 |
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| CDS-3UTR CAA 90 bp | GGGCTGATCAACATACTCGATCCACGGAGGGTGTGCTGCCTTCAGTCTGGACTTGATCTTCCCATATGGTaGGCAGAGCTTCACCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: GLINILDPRRVCCLQSGLDLPIW*AELHQV Trigger: GACCTGGTGAAGCTCTGCCAACCATATGGGAAGATC...AAGTCCAGACTGAAGGCAGCACACCCTCCGTGGATCGAGTATGTTGATCAGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR CAA 90 bp | GGGCTGATCAACATACTCGATCCACGGAGGGTGTGCTGCCTTCAGTCTGGACTTCTGAGGGTACATCTGTaGTTTCCACACTTTGCCCAT | + |
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Preference number: 5 (lower is better) Translates to: GLINILDPRRVCCLQSGLLRVHL*FPHFAH Trigger: ATGGGCAAAGTGTGGAAACAACAGATGTACCCTCAG...AAGTCCAGACTGAAGGCAGCACACCCTCCGTGGATCGAGTATGTTGATCAGCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR CAA 90 bp | AAAGCCCTAGGCTGCTGCTTACAAGGTGCACTAGACCAGCCCATTTGGTCAAAGGCAGAGCCCCGATACTaGTTCTCTCTGGTTTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: KALGCCLQGALDQPIWSKAEPRY*FSLVSF Trigger: AAAGGAAACCAGAGAGAACAAGTATCGGGGCTCTGC...CTTTGACCAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAGCCTAGGGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164147.8 |
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| CDS-3UTR CAA 90 bp | AAAGCCCTAGGCTGCTGCTTACAAGGTGCACTAGACCAGCCCATTTGGTCAAAGCTACTGCTGCTACTGTaGTTATTACTGCTGGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: KALGCCLQGALDQPIWSKLLLLL*LLLLVV Trigger: CACCACCAGCAGTAATAACAACAGTAGCAGCAGTAG...CTTTGACCAAATGGGCTGGTCTAGTGCACCTTGTAAGCAGCAGCCTAGGGCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CAA 90 bp | ACTGGCTCGTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTCATTTGTTCAGAGACTGCTTGGCTaGCAGATACTGGGGGTAGTA | + |
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Preference number: 5 (lower is better) Translates to: TGSSVFGEVTFKSAKSFVQRLLG*QILGVV Trigger: TACTACCCCCAGTATCTGCAAGCCAAGCAGTCTCTG...AACAAATGACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGACGAGCCAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR CAA 90 bp | CTTCAGTCTGGACTTCACAAAGCACAAGTTTTAGGGAGCATAAAACCAATAATAGGGACCAGAGACTGCTaGGCTTGCAGATACTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: LQSGLHKAQVLGSIKPIIGTRDC*ACRYWG Trigger: CCCCCAGTATCTGCAAGCCAAGCAGTCTCTGGTCCC...TATTATTGGTTTTATGCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR CAA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTCTCTCTGGTTTCCTTaGCCACCTGGTAGGCAGATA | + |
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Preference number: 5 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMSLWFP*PPGRQI Trigger: TATCTGCCTACCAGGTGGCAAAGGAAACCAGAGAGA...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164147.8 |
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| CDS-3UTR CAA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATGATCTTCCCATATGGTaGGCAGAGCTTCACCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: KQFSLLALHYLTRYVKNHDLPIW*AELHQV Trigger: GACCTGGTGAAGCTCTGCCAACCATATGGGAAGATC...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CAA 90 bp | TGTTTCACACAAAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGCTTCGCATTTTTCCGTaGATTCCATCCTGGCAAAGC | + |
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Preference number: 5 (lower is better) Translates to: CFTQNSFPSLHFTTLHAMLRIFP*IPSWQS Trigger: GCTTTGCCAGGATGGAATCAACGGAAAAATGCGAAG...CATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTTTGTGTGAAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CAA 90 bp | ACTGGCTCGTCGGTCTTTGGTGAAGTTACCTTTAAAAGTGCCAAGTCATTTGTTTATCCAAAATCGCCTTaGTGGACACGATCTTCCCAT | + |
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Preference number: 5 (lower is better) Translates to: TGSSVFGEVTFKSAKSFVYPKSP*WTRSSH Trigger: ATGGGAAGATCGTGTCCACAAAGGCGATTTTGGATA...AACAAATGACTTGGCACTTTTAAAGGTAACTTCACCAAAGACCGACGAGCCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR CAA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATCTTCGCATTTTTCCGTaGATTCCATCCTGGCAAAGC | + |
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Preference number: 5 (lower is better) Translates to: KQFSLLALHYLTRYVKNHLRIFP*IPSWQS Trigger: GCTTTGCCAGGATGGAATCAACGGAAAAATGCGAAG...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS-3UTR CAA 90 bp | CTTCAGTCTGGACTTCACAAAGCACAAGTTTTAGGGAGCATAAAACCAATAATACTACTGCTGCTACTGTaGTTATTACTGCTGGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: LQSGLHKAQVLGSIKPIILLLLL*LLLLVV Trigger: CACCACCAGCAGTAATAACAACAGTAGCAGCAGTAG...TATTATTGGTTTTATGCTCCCTAAAACTTGTGCTTTGTGAAGTCCAGACTGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS-3UTR CAA 90 bp | AAACAGTTTTCCCTCCTTGCACTTCACTACCTTACACGCTATGTGAAAAATCATTATCCAAAATCGCCTTaGTGGACACGATCTTCCCAT | + |
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Preference number: 5 (lower is better) Translates to: KQFSLLALHYLTRYVKNHYPKSP*WTRSSH Trigger: ATGGGAAGATCGTGTCCACAAAGGCGATTTTGGATA...ATGATTTTTCACATAGCGTGTAAGGTAGTGAAGTGCAAGGAGGGAAAACTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028347.13 ENSMUST00000164147.8 |
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| CDS GCA 72 bp | GGGCCATGGGGTGTGCTGGGACCAGAGACTGCTGCTTaGGGTAGGGCGTCCTGCAGCCGCCGGCAGCGCCGG | + |
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Preference number: 6 (lower is better) Translates to: GPWGVLGPETAA*GRASCSRRQRR Trigger: CCGGCGCTGCCGGCGGCTGCAGGACGCCCTACCGCAAGCAGCAGTCTCTGGTCCCAGCACACCCCATGGCCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164147.8 |
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| CDS CCA 72 bp | GGTGGTGCTGGGACTGGGTGGGGCCATGGGGTGTGCTaGGACCAGAGACTGCTTGGCTTGCAGATACTGGGG | + |
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Preference number: 6 (lower is better) Translates to: GGAGTGWGHGVC*DQRLLGLQILG Trigger: CCCCAGTATCTGCAAGCCAAGCAGTCTCTGGTCCCAGCACACCCCATGGCCCCACCCAGTCCCAGCACCACC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS CCA 72 bp | ACTGTTGTTATTACTGCTGGTGGTGCTGGGACTGGGTaGGGCCATGGGGTGTGCTGGGACCAGAGACTGCTG | + |
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Preference number: 6 (lower is better) Translates to: TVVITAGGAGTG*GHGVCWDQRLL Trigger: CAGCAGTCTCTGGTCCCAGCACACCCCATGGCCCCACCCAGTCCCAGCACCACCAGCAGTAATAACAACAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164147.8 |
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| CDS CCA 72 bp | ACTGTTGTTATTACTGCTGGTGGTGCTGGGACTGGGTaGGGCCATGGGGTGTGCTGGGACCAGAGACTGCTT | + |
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Preference number: 6 (lower is better) Translates to: TVVITAGGAGTG*GHGVCWDQRLL Trigger: AAGCAGTCTCTGGTCCCAGCACACCCCATGGCCCCACCCAGTCCCAGCACCACCAGCAGTAATAACAACAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS CAA 72 bp | GGCCATGGGGTGTGCTGGGACCAGAGACTGCTTGGCTaGCAGATACTGGGGGTAGTAATAGGTGGCGTACTG | + |
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Preference number: 6 (lower is better) Translates to: GHGVCWDQRLLG*QILGVVIGGVL Trigger: CAGTACGCCACCTATTACTACCCCCAGTATCTGCAAGCCAAGCAGTCTCTGGTCCCAGCACACCCCATGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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| CDS TCA 72 bp | GTTAACACGGCACCAGGATGCTGCAGAATGTACGGCTaGGGCTGCATCCAAGAGGGGCTCTGCACCTTGATA | + |
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Preference number: 6 (lower is better) Translates to: VNTAPGCCRMYG*GCIQEGLCTLI Trigger: TATCAAGGTGCAGAGCCCCTCTTGGATGCAGCCTCAGCCGTACATTCTGCAGCATCCTGGTGCCGTGTTAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112509.2 ENSMUST00000164147.8 |
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| CDS CCA 72 bp | ACTGCTTGGCTTGCAGATACTGGGGGTAGTAATAGGTaGCGTACTGAGGGTACATCTGTTGTTTCCACACTT | + |
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Preference number: 6 (lower is better) Translates to: TAWLADTGGSNR*RTEGTSVVSTL Trigger: AAGTGTGGAAACAACAGATGTACCCTCAGTACGCCACCTATTACTACCCCCAGTATCTGCAAGCCAAGCAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028347.13 |
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