Pregenerated sensors for RBM8A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078184

Ensembl transcript IDs: ENSMUST00000104983.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	CTTACATCACATTCTTCTTTCCCTTTTGTACCCCAACTCCTCCTGGAGAGCCCCGGCAGCATAACCAAATaGACTTGTAGAGAGACCACC	+
Preference number: 2 (lower is better) Translates to: LTSHSSFPFVPQLLLESPGSITK*TCRETT Trigger: GGTGGTCTCTCTACAAGTCCATTTGGTTATGCTGCC...GGGGCTCTCCAGGAGGAGTTGGGGTACAAAAGGGAAAGAAGAATGTGATGTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000104983.2
3UTR-3UTR GCA 90 bp	CTTACATCACATTCTTCTTTCCCTTTTGTACCCCAACTCCTCCTGGAGAGCCCCAAAACTCAAAAGCAATaGCAAGTAGATAGGGTAAGA	+
Preference number: 2 (lower is better) Translates to: LTSHSSFPFVPQLLLESPKTQKQ*QVDRVR Trigger: TCTTACCCTATCTACTTGGCATTGCTTTTGAGTTTT...GGGGCTCTCCAGGAGGAGTTGGGGTACAAAAGGGAAAGAAGAATGTGATGTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000104983.2
CDS-3UTR CCA 90 bp	CTTACATCACATTCTTCTTTCCCTTTTGTACCCCAACTCCTCCTGGAGAGCCCCTTCAACAGAGCGCTGTaGCCCAGGTTCATCGCTGTC	+
Preference number: 4 (lower is better) Translates to: LTSHSSFPFVPQLLLESPFNRAL*PRFIAV Trigger: GACAGCGATGAACCTGGGCCACAGCGCTCTGTTGAA...GGGGCTCTCCAGGAGGAGTTGGGGTACAAAAGGGAAAGAAGAATGTGATGTAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000104983.2
CDS-3UTR CAA 90 bp	CTTACATCACATTCTTCTTTCCCTTTTGTACCCCAACTCCTCCTGGAGAGCCCCCCATATTCAGCGAATTaGTCATGGATGTCTTCTTCA	+
Preference number: 5 (lower is better) Translates to: LTSHSSFPFVPQLLLESPPYSAN*SWMSSS Trigger: TGAAGAAGACATCCATGACAAATTCGCTGAATATGG...GGGGCTCTCCAGGAGGAGTTGGGGTACAAAAGGGAAAGAAGAATGTGATGTAAG 46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000104983.2