Pregenerated sensors for RBM8A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038374Ensembl transcript IDs: ENSMUST00000048915.11, ENSMUST00000196456.5, ENSMUST00000198027.5, ENSMUST00000200647.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACCATACCCTTCCTATCCAGGCAGCTCACCTACTGGTTCTCTGGCTaGTACTGTTTACCAGCCCTCAGGACCTCATGCTTACTCAACTCA | + |
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Preference number: 1 (lower is better) Translates to: TIPFLSRQLTYWFSG*YCLPALRTSCLLNS Trigger: TGAGTTGAGTAAGCATGAGGTCCTGAGGGCTGGTAAACAGTATCAGCCAGAGAACCAGTAGGTGAGCTGCCTGGATAGGAAGGGTATGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR TCA 90 bp | GCTAATCCTCCACCTGGCTATGCAGCTGGGGATGACTTCAACTTATaGTTCTTTAGCCTTCACCTCCCCAGTAAGTGCCAGGATCAAAGG | + |
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Preference number: 1 (lower is better) Translates to: ANPPPGYAAGDDFNL*FFSLHLPSKCQDQR Trigger: CCTTTGATCCTGGCACTTACTGGGGAGGTGAAGGCTAAAGAATCATAAGTTGAAGTCATCCCCAGCTGCATAGCCAGGTGGAGGATTAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR TCA 90 bp | AAAATCTCATTATCCCTACCCTTATCTTCTAAGACAAAGAAATGCTaGACAGTCTCCATGAGCCTTTCTAGAAACTTAGAATGCCACGCC | + |
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Preference number: 1 (lower is better) Translates to: KISLSLPLSSKTKKC*TVSMSLSRNLECHA Trigger: GGCGTGGCATTCTAAGTTTCTAGAAAGGCTCATGGAGACTGTTCAGCATTTCTTTGTCTTAGAAGATAAGGGTAGGGATAATGAGATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR TCA 90 bp | AAAAGCCGGGCAGTGGTGGTGCACGCCTTTAATCCTAGCACCTGGGAGGCACAGGCATCACAAAGCCCCTaGAGTTCAAGGCCAGCTGCA | + |
|
Preference number: 2 (lower is better) Translates to: KSRAVVVHAFNPSTWEAQASQSP*SSRPAA Trigger: TGCAGCTGGCCTTGAACTTCAGGGGCTTTGTGATGC...CTGTGCCTCCCAGGTGCTAGGATTAAAGGCGTGCACCACCACTGCCCGGCTTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR CCA 90 bp | AAAAGCCGGGCAGTGGTGGTGCACGCCTTTAATCCTAGCACCTGGGAGGCACAGTATCTTCAGAGGGCATaGGATCCCATGGTGAGCCAC | + |
|
Preference number: 2 (lower is better) Translates to: KSRAVVVHAFNPSTWEAQYLQRA*DPMVSH Trigger: GTGGCTCACCATGGGATCCCATGCCCTCTGAAGATA...CTGTGCCTCCCAGGTGCTAGGATTAAAGGCGTGCACCACCACTGCCCGGCTTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR TCA 90 bp | TTTGCCATTATGCACTGGGGAGAGAGAGACAGGAACATCAGTCTGAGGCCAGTGCAGCTGCACAGGCTCTaGCAGAGAAGCAAGAGACAC | + |
|
Preference number: 2 (lower is better) Translates to: FAIMHWGERDRNISLRPVQLHRL*QRSKRH Trigger: GTGTCTCTTGCTTCTCTGTCAGAGCCTGTGCAGCTG...CACTGGCCTCAGACTGATGTTCCTGTCTCTCTCTCCCCAGTGCATAATGGCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR TCA 90 bp | CCCCCTTTCCATCCCCTTTCACCCAGGACAAGATCTCATAGGCTAATCCTCCACAGTGCCCTTAACTACTaGGCCATCTCTCCAGCCCAT | + |
|
Preference number: 2 (lower is better) Translates to: PPFHPLSPRTRSHRLILHSALNY*AISPAH Trigger: ATGGGCTGGAGAGATGGCTCAGTAGTTAAGGGCACT...GTGGAGGATTAGCCTATGAGATCTTGTCCTGGGTGAAAGGGGATGGAAAGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR TCA 90 bp | TTTGCCATTATGCACTGGGGAGAGAGAGACAGGAACATCAGTCTGAGGCCAGTGAGTGCCCTTAACTACTaGGCCATCTCTCCAGCCCAT | + |
|
Preference number: 2 (lower is better) Translates to: FAIMHWGERDRNISLRPVSALNY*AISPAH Trigger: ATGGGCTGGAGAGATGGCTCAGTAGTTAAGGGCACT...CACTGGCCTCAGACTGATGTTCCTGTCTCTCTCTCCCCAGTGCATAATGGCAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | CTGGATTTGGACTTAGGACCTCTGGAAGAGGTGGTTCTTACCCACCCGCTAAGCGACAGGATCTCTCTGTaGAGCCCTGGCTATCCTAAA | + |
|
Preference number: 2 (lower is better) Translates to: LDLDLGPLEEVVLTHPLSDRISL*SPGYPK Trigger: TTTAGGATAGCCAGGGCTGCACAGAGAGATCCTGTC...GCTTAGCGGGTGGGTAAGAACCACCTCTTCCAGAGGTCCTAAGTCCAAATCCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR TCA 90 bp | CATGTAGTTGCTGGATTTGGACTTAGGACCTCTGGAAGAGGTGGTTCTTACCCACAGCTGCACAGGCTCTaGCAGAGAAGCAAGAGACAC | + |
|
Preference number: 2 (lower is better) Translates to: HVVAGFGLRTSGRGGSYPQLHRL*QRSKRH Trigger: GTGTCTCTTGCTTCTCTGTCAGAGCCTGTGCAGCTG...TGGGTAAGAACCACCTCTTCCAGAGGTCCTAAGTCCAAATCCAGCAACTACATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR TCA 90 bp | GCCACCATGTGGGTGCTGGGAATTGAACTCAGGACCTCTGGAAGGACAGTCAGTAAGACAAAGAAATGCTaGACAGTCTCCATGAGCCTT | + |
|
Preference number: 2 (lower is better) Translates to: ATMWVLGIELRTSGRTVSKTKKC*TVSMSL Trigger: AAGGCTCATGGAGACTGTTCAGCATTTCTTTGTCTT...ACTGACTGTCCTTCCAGAGGTCCTGAGTTCAATTCCCAGCACCCACATGGTGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR TCA 90 bp | TGTAGCTATCTTCAGAGGGCATGGGATCCCATGGTGAGCCACCATGTGGGTGCTAAGACAAAGAAATGCTaGACAGTCTCCATGAGCCTT | + |
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Preference number: 2 (lower is better) Translates to: CSYLQRAWDPMVSHHVGAKTKKC*TVSMSL Trigger: AAGGCTCATGGAGACTGTTCAGCATTTCTTTGTCTT...AGCACCCACATGGTGGCTCACCATGGGATCCCATGCCCTCTGAAGATAGCTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | GAGACAGGATCTCTCTGTGCAGCCCTGGCTATCCTAAAACTCTCCTGTAGACCAACCAAAAGATCCACCTaGTTCCCAAGTGCTGGGATT | + |
|
Preference number: 2 (lower is better) Translates to: ETGSLCAALAILKLSCRPTKRST*FPSAGI Trigger: AATCCCAGCACTTGGGAAGCAGGTGGATCTTTTGGT...TGGTCTACAGGAGAGTTTTAGGATAGCCAGGGCTGCACAGAGAGATCCTGTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR TCA 90 bp | AAGTTTAATATTTGCCATTATGCACTGGGGAGAGAGAGACAGGAACATCAGTCTCATGGGATCCCATGGTaGGCCACCATGTGGGTGCTG | + |
|
Preference number: 2 (lower is better) Translates to: KFNICHYALGRERQEHQSHGIPW*ATMWVL Trigger: CAGCACCCACATGGTGGCTCACCATGGGATCCCATG...AGACTGATGTTCCTGTCTCTCTCTCCCCAGTGCATAATGGCAAATATTAAACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | ATCACAAAGCCCCTGAAGTTCAAGGCCAGCTGCACAGGCTCTGACAGAGAAGCACACAATCATTCACAATaGCCCACTGTAGTTGTTCAG | + |
|
Preference number: 2 (lower is better) Translates to: ITKPLKFKASCTGSDREAHNHSQ*PTVVVQ Trigger: CTGAACAACTACAGTGGGGCATTGTGAATGATTGTG...TGCTTCTCTGTCAGAGCCTGTGCAGCTGGCCTTGAACTTCAGGGGCTTTGTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR TCA 90 bp | TCAACTCACTCTTCCAAATACCTTACAACAGCTAGAAATCTGAGAACCAGGCGTGCATCACAAAGCCCCTaGAGTTCAAGGCCAGCTGCA | + |
|
Preference number: 2 (lower is better) Translates to: STHSSKYLTTARNLRTRRASQSP*SSRPAA Trigger: TGCAGCTGGCCTTGAACTTCAGGGGCTTTGTGATGC...ACGCCTGGTTCTCAGATTTCTAGCTGTTGTAAGGTATTTGGAAGAGTGAGTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR TCA 90 bp | TCATTCTACCAACTGAGCCACATCTCTAATCCCTATGAGCTATTCTTATTTCTCCATGGGATCCCATGGTaGGCCACCATGTGGGTGCTG | + |
|
Preference number: 2 (lower is better) Translates to: SFYQLSHISNPYELFLFLHGIPW*ATMWVL Trigger: CAGCACCCACATGGTGGCTCACCATGGGATCCCATG...GAGAAATAAGAATAGCTCATAGGGATTAGAGATGTGGCTCAGTTGGTAGAATGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR TCA 90 bp | GTGCCAGGATCAAAGGCAGGAGTGTCGTACCCATTTGGTCCTGTTATAAAGCCTAAGACAAAGAAATGCTaGACAGTCTCCATGAGCCTT | + |
|
Preference number: 2 (lower is better) Translates to: VPGSKAGVSYPFGPVIKPKTKKC*TVSMSL Trigger: AAGGCTCATGGAGACTGTTCAGCATTTCTTTGTCTT...AGGCTTTATAACAGGACCAAATGGGTACGACACTCCTGCCTTTGATCCTGGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | CCCCCTTTCCATCCCCTTTCACCCAGGACAAGATCTCATAGGCTAATCCTCCACGTTAAGTTTAATATTTaGCATTATGCACTGGGGAGA | + |
|
Preference number: 2 (lower is better) Translates to: PPFHPLSPRTRSHRLILHVKFNI*HYALGR Trigger: TCTCCCCAGTGCATAATGGCAAATATTAAACTTAAC...GTGGAGGATTAGCCTATGAGATCTTGTCCTGGGTGAAAGGGGATGGAAAGGGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR CCA 90 bp | TCATTCTACCAACTGAGCCACATCTCTAATCCCTATGAGCTATTCTTATTTCTCTATCTTCAGAGGGCATaGGATCCCATGGTGAGCCAC | + |
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Preference number: 2 (lower is better) Translates to: SFYQLSHISNPYELFLFLYLQRA*DPMVSH Trigger: GTGGCTCACCATGGGATCCCATGCCCTCTGAAGATA...GAGAAATAAGAATAGCTCATAGGGATTAGAGATGTGGCTCAGTTGGTAGAATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR TCA 90 bp | AGGCGTATCTTCCACAAAACCAATACTTATTTAATCTACCTTCTCAGAAACCACAGTGCCCTTAACTACTaGGCCATCTCTCCAGCCCAT | + |
|
Preference number: 2 (lower is better) Translates to: RRIFHKTNTYLIYLLRNHSALNY*AISPAH Trigger: ATGGGCTGGAGAGATGGCTCAGTAGTTAAGGGCACT...GTGGTTTCTGAGAAGGTAGATTAAATAAGTATTGGTTTTGTGGAAGATACGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | CATGTAGTTGCTGGATTTGGACTTAGGACCTCTGGAAGAGGTGGTTCTTACCCACTGGGATTAAAGGTGTaGATATTGTTACATAGTACC | + |
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Preference number: 2 (lower is better) Translates to: HVVAGFGLRTSGRGGSYPLGLKV*ILLHST Trigger: GGTACTATGTAACAATATGCACACCTTTAATCCCAG...TGGGTAAGAACCACCTCTTCCAGAGGTCCTAAGTCCAAATCCAGCAACTACATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | CTTAACCAATTCAATTCAAACCCCAAGCAATTTATCAAAAGGAAGAGAAGGGCCGACAGGATCTCTCTGTaGAGCCCTGGCTATCCTAAA | + |
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Preference number: 2 (lower is better) Translates to: LNQFNSNPKQFIKRKRRADRISL*SPGYPK Trigger: TTTAGGATAGCCAGGGCTGCACAGAGAGATCCTGTC...GGCCCTTCTCTTCCTTTTGATAAATTGCTTGGGGTTTGAATTGAATTGGTTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR CCA 90 bp | CTTCCACAAAACCAATACTTATTTAATCTACCTTCTCAGAAACCACCAAGGCATTTTAATCCTAGCACCTaGGAGGCACAGGGGAGACAG | + |
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Preference number: 2 (lower is better) Translates to: LPQNQYLFNLPSQKPPRHFNPST*EAQGRQ Trigger: CTGTCTCCCCTGTGCCTCCCAGGTGCTAGGATTAAA...ATGCCTTGGTGGTTTCTGAGAAGGTAGATTAAATAAGTATTGGTTTTGTGGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | TCAACTCACTCTTCCAAATACCTTACAACAGCTAGAAATCTGAGAACCAGGCGTCACAATCATTCACAATaGCCCACTGTAGTTGTTCAG | + |
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Preference number: 2 (lower is better) Translates to: STHSSKYLTTARNLRTRRHNHSQ*PTVVVQ Trigger: CTGAACAACTACAGTGGGGCATTGTGAATGATTGTG...ACGCCTGGTTCTCAGATTTCTAGCTGTTGTAAGGTATTTGGAAGAGTGAGTTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | AGGCGTATCTTCCACAAAACCAATACTTATTTAATCTACCTTCTCAGAAACCACAAGTTCAAGGCCAGCTaGACAGGCTCTGACAGAGAA | + |
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Preference number: 2 (lower is better) Translates to: RRIFHKTNTYLIYLLRNHKFKAS*TGSDRE Trigger: TTCTCTGTCAGAGCCTGTGCAGCTGGCCTTGAACTT...GTGGTTTCTGAGAAGGTAGATTAAATAAGTATTGGTTTTGTGGAAGATACGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | GTTTACCAGCCCTCAGGACCTCATGCTTACTCAACTCACTCTTCCAAATACCTTCTGGGATTAAAGGTGTaGATATTGTTACATAGTACC | + |
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Preference number: 2 (lower is better) Translates to: VYQPSGPHAYSTHSSKYLLGLKV*ILLHST Trigger: GGTACTATGTAACAATATGCACACCTTTAATCCCAG...AAGGTATTTGGAAGAGTGAGTTGAGTAAGCATGAGGTCCTGAGGGCTGGTAAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | AAAACGTTAAGTTTAATATTTGCCATTATGCACTGGGGAGAGAGAGACAGGAACCACAATCATTCACAATaGCCCACTGTAGTTGTTCAG | + |
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Preference number: 2 (lower is better) Translates to: KTLSLIFAIMHWGERDRNHNHSQ*PTVVVQ Trigger: CTGAACAACTACAGTGGGGCATTGTGAATGATTGTG...GTTCCTGTCTCTCTCTCCCCAGTGCATAATGGCAAATATTAAACTTAACGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | TCATTCTACCAACTGAGCCACATCTCTAATCCCTATGAGCTATTCTTATTTCTCCACAATCATTCACAATaGCCCACTGTAGTTGTTCAG | + |
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Preference number: 2 (lower is better) Translates to: SFYQLSHISNPYELFLFLHNHSQ*PTVVVQ Trigger: CTGAACAACTACAGTGGGGCATTGTGAATGATTGTG...GAGAAATAAGAATAGCTCATAGGGATTAGAGATGTGGCTCAGTTGGTAGAATGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | AGGCGTATCTTCCACAAAACCAATACTTATTTAATCTACCTTCTCAGAAACCACCTGGGATTAAAGGTGTaGATATTGTTACATAGTACC | + |
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Preference number: 2 (lower is better) Translates to: RRIFHKTNTYLIYLLRNHLGLKV*ILLHST Trigger: GGTACTATGTAACAATATGCACACCTTTAATCCCAG...GTGGTTTCTGAGAAGGTAGATTAAATAAGTATTGGTTTTGTGGAAGATACGCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR GCA 90 bp | CTTAACCAATTCAATTCAAACCCCAAGCAATTTATCAAAAGGAAGAGAAGGGCCGTTAAGTTTAATATTTaGCATTATGCACTGGGGAGA | + |
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Preference number: 2 (lower is better) Translates to: LNQFNSNPKQFIKRKRRAVKFNI*HYALGR Trigger: TCTCCCCAGTGCATAATGGCAAATATTAAACTTAAC...GGCCCTTCTCTTCCTTTTGATAAATTGCTTGGGGTTTGAATTGAATTGGTTAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR CCA 72 bp | CGGGCAGTGGTGGTGCACGCCTTTAATCCTAGCACCTaGGAGGCACAGGGGAGACAGTCAGGGCTACACAGA | + |
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Preference number: 3 (lower is better) Translates to: RAVVVHAFNPST*EAQGRQSGLHR Trigger: TCTGTGTAGCCCTGACTGTCTCCCCTGTGCCTCCCAGGTGCTAGGATTAAAGGCGTGCACCACCACTGCCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR CCA 72 bp | GGCATGGGATCCCATGGTGAGCCACCATGTGGGTGCTaGGAATTGAACTCAGGACCTCTGGAAGGACAGTCA | + |
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Preference number: 3 (lower is better) Translates to: GMGSHGEPPCGC*ELNSGPLEGQS Trigger: TGACTGTCCTTCCAGAGGTCCTGAGTTCAATTCCCAGCACCCACATGGTGGCTCACCATGGGATCCCATGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR TCA 72 bp | GTTGTAGCTATCTTCAGAGGGCATGGGATCCCATGGTaGGCCACCATGTGGGTGCTGGGAATTGAACTCAGG | + |
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Preference number: 3 (lower is better) Translates to: VVAIFRGHGIPW*ATMWVLGIELR Trigger: CCTGAGTTCAATTCCCAGCACCCACATGGTGGCTCACCATGGGATCCCATGCCCTCTGAAGATAGCTACAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR TCA 72 bp | AGGACCTCTGGAAGGACAGTCAGTGCCCTTAACTACTaGGCCATCTCTCCAGCCCATCAAGCTGGGTTTCTT | + |
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Preference number: 3 (lower is better) Translates to: RTSGRTVSALNY*AISPAHQAGFL Trigger: AAGAAACCCAGCTTGATGGGCTGGAGAGATGGCTCAGTAGTTAAGGGCACTGACTGTCCTTCCAGAGGTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR TCA 72 bp | TTCCTATCCAGGCAGCTCACCTACTGGTTCTCTGGCTaGTACTGTTTACCAGCCCTCAGGACCTCATGCTTA | + |
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Preference number: 3 (lower is better) Translates to: FLSRQLTYWFSG*YCLPALRTSCL Trigger: TAAGCATGAGGTCCTGAGGGCTGGTAAACAGTATCAGCCAGAGAACCAGTAGGTGAGCTGCCTGGATAGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR TCA 72 bp | CCACCTGGCTATGCAGCTGGGGATGACTTCAACTTATaGTTCTTTAGCCTTCACCTCCCCAGTAAGTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: PPGYAAGDDFNL*FFSLHLPSKCQ Trigger: CTGGCACTTACTGGGGAGGTGAAGGCTAAAGAATCATAAGTTGAAGTCATCCCCAGCTGCATAGCCAGGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR CCA 72 bp | GCCCTAGCCCTGTTTATCCAAGGCAGCATAACCAAATaGACTTGTAGAGAGACCACCCAGTCGACAGAGGAT | + |
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Preference number: 3 (lower is better) Translates to: ALALFIQGSITK*TCRETTQSTED Trigger: ATCCTCTGTCGACTGGGTGGTCTCTCTACAAGTCCATTTGGTTATGCTGCCTTGGATAAACAGGGCTAGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR GCA 72 bp | CTAAGCATCACAAAGCCCCTGAAGTTCAAGGCCAGCTaGACAGGCTCTGACAGAGAAGCAAGAGACACTAAT | + |
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Preference number: 3 (lower is better) Translates to: LSITKPLKFKAS*TGSDREARDTN Trigger: ATTAGTGTCTCTTGCTTCTCTGTCAGAGCCTGTGCAGCTGGCCTTGAACTTCAGGGGCTTTGTGATGCTTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR CAA 90 bp | CCCCCTTTCCATCCCCTTTCACCCAGGACAAGATCTCATAGGCTAATCCTCCACTTAAAGGTGTGCATATaGTTACATAGTACCCAAGCT | + |
|
Preference number: 3 (lower is better) Translates to: PPFHPLSPRTRSHRLILHLKVCI*LHSTQA Trigger: AGCTTGGGTACTATGTAACAATATGCACACCTTTAA...GTGGAGGATTAGCCTATGAGATCTTGTCCTGGGTGAAAGGGGATGGAAAGGGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR TCA 72 bp | CTGGGGCTGTGCATACTAGGCAGTCATTCTACCAACTaGGCCACATCTCTAATCCCTATGAGCTATTCTTAT | + |
|
Preference number: 3 (lower is better) Translates to: LGLCILGSHSTN*ATSLIPMSYSY Trigger: ATAAGAATAGCTCATAGGGATTAGAGATGTGGCTCAGTTGGTAGAATGACTGCCTAGTATGCACAGCCCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR GCA 72 bp | CTACCTTCTCAGAAACCACCAAGGCATCCTAAACCCTaGAAATCTCAACTAAGATATATTCTTAACCAATTC | + |
|
Preference number: 3 (lower is better) Translates to: LPSQKPPRHPKP*KSQLRYILNQF Trigger: GAATTGGTTAAGAATATATCTTAGTTGAGATTTGCAGGGTTTAGGATGCCTTGGTGGTTTCTGAGAAGGTAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR-3UTR CAA 90 bp | TCATTCTACCAACTGAGCCACATCTCTAATCCCTATGAGCTATTCTTATTTCTCTTAAAGGTGTGCATATaGTTACATAGTACCCAAGCT | + |
|
Preference number: 3 (lower is better) Translates to: SFYQLSHISNPYELFLFLLKVCI*LHSTQA Trigger: AGCTTGGGTACTATGTAACAATATGCACACCTTTAA...GAGAAATAAGAATAGCTCATAGGGATTAGAGATGTGGCTCAGTTGGTAGAATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| 3UTR TCA 72 bp | TTATCCCTACCCTTATCTTCTAAGACAAAGAAATGCTaGACAGTCTCCATGAGCCTTTCTAGAAACTTAGAA | + |
|
Preference number: 3 (lower is better) Translates to: LSLPLSSKTKKC*TVSMSLSRNLE Trigger: TTCTAAGTTTCTAGAAAGGCTCATGGAGACTGTTCAGCATTTCTTTGTCTTAGAAGATAAGGGTAGGGATAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR GCA 90 bp | AAAAGCCGGGCAGTGGTGGTGCACGCCTTTAATCCTAGCACCTGGGAGGCACAGGGCCTCCTCTCCTCTTaGCCTTTGGTGGTCCACGAA | + |
|
Preference number: 4 (lower is better) Translates to: KSRAVVVHAFNPSTWEAQGLLSS*PLVVHE Trigger: TTCGTGGACCACCAAAGGGCAAGAGGAGAGGAGGCC...CTGTGCCTCCCAGGTGCTAGGATTAAAGGCGTGCACCACCACTGCCCGGCTTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000200647.2 |
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| CDS-3UTR GCA 90 bp | CCACCATGTGGGTGCTGGGAATTGAACTCAGGACCTCTGGAAGGACAGTCAGTGGGCCTCCTCTCCTCTTaGCCTTTGGTGGTCCACGAA | + |
|
Preference number: 4 (lower is better) Translates to: PPCGCWELNSGPLEGQSVGLLSS*PLVVHE Trigger: TTCGTGGACCACCAAAGGGCAAGAGGAGAGGAGGCC...CACTGACTGTCCTTCCAGAGGTCCTGAGTTCAATTCCCAGCACCCACATGGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000200647.2 |
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| CDS-3UTR CCA 90 bp | AGCATCACAAAGCCCCTGAAGTTCAAGGCCAGCTGCACAGGCTCTGACAGAGAATTCAACAGAGCGCTGTaGTCCAGGTTCATCGCCGTC | + |
|
Preference number: 4 (lower is better) Translates to: SITKPLKFKASCTGSDREFNRAL*SRFIAV Trigger: GACGGCGATGAACCTGGACCACAGCGCTCTGTTGAA...TTCTCTGTCAGAGCCTGTGCAGCTGGCCTTGAACTTCAGGGGCTTTGTGATGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR TCA 90 bp | TGTAGCTATCTTCAGAGGGCATGGGATCCCATGGTGAGCCACCATGTGGGTGCTAACACCAGTCCACACTaGTTGGCTGCCCCATCAAAT | + |
|
Preference number: 4 (lower is better) Translates to: CSYLQRAWDPMVSHHVGANTSPH*LAAPSN Trigger: ATTTGATGGGGCAGCCAATCAGTGTGGACTGGTGTT...AGCACCCACATGGTGGCTCACCATGGGATCCCATGCCCTCTGAAGATAGCTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR CCA 90 bp | GCCCTAGCCCTGTTTATCCAAGGCAGCATAACCAAATGGACTTGTAGAGAGACCTTCAACAGAGCGCTGTaGTCCAGGTTCATCGCCGTC | + |
|
Preference number: 4 (lower is better) Translates to: ALALFIQGSITKWTCRETFNRAL*SRFIAV Trigger: GACGGCGATGAACCTGGACCACAGCGCTCTGTTGAA...GGTCTCTCTACAAGTCCATTTGGTTATGCTGCCTTGGATAAACAGGGCTAGGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR CCA 90 bp | TTTGCCATTATGCACTGGGGAGAGAGAGACAGGAACATCAGTCTGAGGCCAGTGCCAGTCCACACTGATTaGCTGCCCCATCAAATCTTG | + |
|
Preference number: 4 (lower is better) Translates to: FAIMHWGERDRNISLRPVPVHTD*LPHQIL Trigger: CAAGATTTGATGGGGCAGCCAATCAGTGTGGACTGG...CACTGGCCTCAGACTGATGTTCCTGTCTCTCTCTCCCCAGTGCATAATGGCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR CCA 90 bp | GAGACAGGATCTCTCTGTGCAGCCCTGGCTATCCTAAAACTCTCCTGTAGACCACCAGTCCACACTGATTaGCTGCCCCATCAAATCTTG | + |
|
Preference number: 4 (lower is better) Translates to: ETGSLCAALAILKLSCRPPVHTD*LPHQIL Trigger: CAAGATTTGATGGGGCAGCCAATCAGTGTGGACTGG...TGGTCTACAGGAGAGTTTTAGGATAGCCAGGGCTGCACAGAGAGATCCTGTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR TCA 90 bp | AAACACAAGGTCCGCCCTAGCCCTGTTTATCCAAGGCAGCATAACCAAATGGACAACACCAGTCCACACTaGTTGGCTGCCCCATCAAAT | + |
|
Preference number: 4 (lower is better) Translates to: KHKVRPSPVYPRQHNQMDNTSPH*LAAPSN Trigger: ATTTGATGGGGCAGCCAATCAGTGTGGACTGGTGTT...GTCCATTTGGTTATGCTGCCTTGGATAAACAGGGCTAGGGCGGACCTTGTGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR CCA 90 bp | TTCAAGGCCAGCTGCACAGGCTCTGACAGAGAAGCAAGAGACACTAATATAACATTCAACAGAGCGCTGTaGTCCAGGTTCATCGCCGTC | + |
|
Preference number: 4 (lower is better) Translates to: FKASCTGSDREARDTNITFNRAL*SRFIAV Trigger: GACGGCGATGAACCTGGACCACAGCGCTCTGTTGAA...TGTTATATTAGTGTCTCTTGCTTCTCTGTCAGAGCCTGTGCAGCTGGCCTTGAA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR CCA 90 bp | TGTAGCTATCTTCAGAGGGCATGGGATCCCATGGTGAGCCACCATGTGGGTGCTTCAGCGAATTTGTCATaGATATCTTCTTCAGTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: CSYLQRAWDPMVSHHVGASANLS*ISSSVA Trigger: AGCCACTGAAGAAGATATCCATGACAAATTCGCTGA...AGCACCCACATGGTGGCTCACCATGGGATCCCATGCCCTCTGAAGATAGCTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR CCA 90 bp | CTTTCTAGAAACTTAGAATGCCACGCCAGACAGAAGGATCTTCACAATCATTCATTCAACAGAGCGCTGTaGTCCAGGTTCATCGCCGTC | + |
|
Preference number: 4 (lower is better) Translates to: LSRNLECHARQKDLHNHSFNRAL*SRFIAV Trigger: GACGGCGATGAACCTGGACCACAGCGCTCTGTTGAA...TGAATGATTGTGAAGATCCTTCTGTCTGGCGTGGCATTCTAAGTTTCTAGAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR GCA 90 bp | AGGCGTATCTTCCACAAAACCAATACTTATTTAATCTACCTTCTCAGAAACCACGGCCTCCTCTCCTCTTaGCCTTTGGTGGTCCACGAA | + |
|
Preference number: 4 (lower is better) Translates to: RRIFHKTNTYLIYLLRNHGLLSS*PLVVHE Trigger: TTCGTGGACCACCAAAGGGCAAGAGGAGAGGAGGCC...GTGGTTTCTGAGAAGGTAGATTAAATAAGTATTGGTTTTGTGGAAGATACGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000200647.2 |
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| CDS-3UTR CCA 90 bp | ACTACTGAGCCATCTCTCCAGCCCATCAAGCTGGGTTTCTTTTACATTGTAAGAGGATATCTTCTTCAGTaGCTTCTTCGTGGACTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: TTEPSLQPIKLGFFYIVRGYLLQ*LLRGLQ Trigger: CTGGAGTCCACGAAGAAGCCACTGAAGAAGATATCC...TCTTACAATGTAAAAGAAACCCAGCTTGATGGGCTGGAGAGATGGCTCAGTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR CCA 90 bp | GCCCTAGCCCTGTTTATCCAAGGCAGCATAACCAAATGGACTTGTAGAGAGACCTCAGCGAATTTGTCATaGATATCTTCTTCAGTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: ALALFIQGSITKWTCRETSANLS*ISSSVA Trigger: AGCCACTGAAGAAGATATCCATGACAAATTCGCTGA...GGTCTCTCTACAAGTCCATTTGGTTATGCTGCCTTGGATAAACAGGGCTAGGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR CCA 90 bp | AGGCACAGGGGAGACAGTCAGGGCTACACAGAGAAACCCTGTCTCAGAAAAATTTCAGCGAATTTGTCATaGATATCTTCTTCAGTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: RHRGDSQGYTEKPCLRKISANLS*ISSSVA Trigger: AGCCACTGAAGAAGATATCCATGACAAATTCGCTGA...AATTTTTCTGAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCTCCCCTGTGCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR TCA 90 bp | CTTTCTAGAAACTTAGAATGCCACGCCAGACAGAAGGATCTTCACAATCATTCAAACACCAGTCCACACTaGTTGGCTGCCCCATCAAAT | + |
|
Preference number: 4 (lower is better) Translates to: LSRNLECHARQKDLHNHSNTSPH*LAAPSN Trigger: ATTTGATGGGGCAGCCAATCAGTGTGGACTGGTGTT...TGAATGATTGTGAAGATCCTTCTGTCTGGCGTGGCATTCTAAGTTTCTAGAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR CCA 90 bp | TCACAATCATTCACAATGCCCCACTGTAGTTGTTCAGTTTCCAGAACAGTAAAGCCAGTCCACACTGATTaGCTGCCCCATCAAATCTTG | + |
|
Preference number: 4 (lower is better) Translates to: SQSFTMPHCSCSVSRTVKPVHTD*LPHQIL Trigger: CAAGATTTGATGGGGCAGCCAATCAGTGTGGACTGG...CTTTACTGTTCTGGAAACTGAACAACTACAGTGGGGCATTGTGAATGATTGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR GCA 90 bp | CTTTCTAGAAACTTAGAATGCCACGCCAGACAGAAGGATCTTCACAATCATTCACTTTTAGTTTGTGGATaGTTCCCCTCTTCCCGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: LSRNLECHARQKDLHNHSLLVCG*FPSSRS Trigger: ACTGCGGGAAGAGGGGAAGCATCCACAAACTAAAAG...TGAATGATTGTGAAGATCCTTCTGTCTGGCGTGGCATTCTAAGTTTCTAGAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198027.5 |
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| 3UTR CAA 72 bp | ACCCACCCGCTAAGCCATCTCACCAGCCCCAAGAAATaGCTTACTTCTTTAAGCTCAAGTTTTAAAGTCATA | + |
|
Preference number: 4 (lower is better) Translates to: THPLSHLTSPKK*LTSLSSSFKVI Trigger: TATGACTTTAAAACTTGAGCTTAAAGAAGTAAGCAATTTCTTGGGGCTGGTGAGATGGCTTAGCGGGTGGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR TCA 90 bp | AGGCGTATCTTCCACAAAACCAATACTTATTTAATCTACCTTCTCAGAAACCACAACACCAGTCCACACTaGTTGGCTGCCCCATCAAAT | + |
|
Preference number: 4 (lower is better) Translates to: RRIFHKTNTYLIYLLRNHNTSPH*LAAPSN Trigger: ATTTGATGGGGCAGCCAATCAGTGTGGACTGGTGTT...GTGGTTTCTGAGAAGGTAGATTAAATAAGTATTGGTTTTGTGGAAGATACGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR CCA 90 bp | AGGCGTATCTTCCACAAAACCAATACTTATTTAATCTACCTTCTCAGAAACCACCCAGTCCACACTGATTaGCTGCCCCATCAAATCTTG | + |
|
Preference number: 4 (lower is better) Translates to: RRIFHKTNTYLIYLLRNHPVHTD*LPHQIL Trigger: CAAGATTTGATGGGGCAGCCAATCAGTGTGGACTGG...GTGGTTTCTGAGAAGGTAGATTAAATAAGTATTGGTTTTGTGGAAGATACGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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| CDS-3UTR GCA 90 bp | AGACAGAAGGATCTTCACAATCATTCACAATGCCCCACTGTAGTTGTTCAGTTTCTTTTAGTTTGTGGATaGTTTCGTCCCCATCCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: RQKDLHNHSQCPTVVVQFLLVCG*FRPHPH Trigger: ATGAGGATGGGGACGAAAGCATCCACAAACTAAAAG...AAACTGAACAACTACAGTGGGGCATTGTGAATGATTGTGAAGATCCTTCTGTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 |
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| CDS-3UTR CCA 90 bp | AAGTTTAATATTTGCCATTATGCACTGGGGAGAGAGAGACAGGAACATCAGTCTTCAGCGAATTTGTCATaGATATCTTCTTCAGTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: KFNICHYALGRERQEHQSSANLS*ISSSVA Trigger: AGCCACTGAAGAAGATATCCATGACAAATTCGCTGA...AGACTGATGTTCCTGTCTCTCTCTCCCCAGTGCATAATGGCAAATATTAAACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000048915.11 ENSMUST00000196456.5 ENSMUST00000198027.5 ENSMUST00000200647.2 |
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