Pregenerated sensors for RBM7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042396Ensembl transcript IDs: ENSMUST00000170000.4, ENSMUST00000213276.2, ENSMUST00000214923.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGTCTGAAAACACTGTTCATCACTGCTTGCCGCTGATAATCTTCTaGAGAAGAAAAGGACCTCTGGACCATCTGAGCTGTCGGAGACAC | + |
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Preference number: 1 (lower is better) Translates to: LSENTVHHCLPLIIF*RRKGPLDHLSCRRH Trigger: GTGTCTCCGACAGCTCAGATGGTCCAGAGGTCCTTTTCTTCTCCAGAAGATTATCAGCGGCAAGCAGTGATGAACAGTGTTTTCAGACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214923.2 |
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| 3UTR TCA 90 bp | TTTCCCAAGAATACAATTAAGATATCACTTGAAATGACTATGCTGTaGCTCACTGTAACACACACACAAAGAACTAGATCTTCACTAGCA | + |
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Preference number: 1 (lower is better) Translates to: FPKNTIKISLEMTML*LTVTHTQRTRSSLA Trigger: TGCTAGTGAAGATCTAGTTCTTTGTGTGTGTGTTACAGTGAGTCACAGCATAGTCATTTCAAGTGATATCTTAATTGTATTCTTGGGAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTAATCACAGCCACCCTTaGCCACACGCAGCCCAAGCT | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCNHSHP*PHAAQA Trigger: AGCTTGGGCTGCGTGTGGGCAAGGGTGGCTGTGATT...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| 3UTR-3UTR TCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTTCCGTTTCATCTTTCTaGGACTGTCTGACATGGCCG | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCSVSSF*DCLTWP Trigger: CGGCCATGTCAGACAGTCTCAGAAAGATGAAACGGA...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR TCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTGTATGGCCATGTGGTTaGGCTGATGGTGAAAATCCC | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCVWPCG*ADGENP Trigger: GGGATTTTCACCATCAGCTCAACCACATGGCCATAC...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR TCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTATCCGTTTCATCTTTCTaGGACTGTCTGACATGGCCG | + |
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Preference number: 2 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLSVSSF*DCLTWP Trigger: CGGCCATGTCAGACAGTCTCAGAAAGATGAAACGGA...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR CCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTCAACTGATCCGCATGTaGAGAACCAAATTTCCCAGC | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCQLIRM*RTKFPS Trigger: GCTGGGAAATTTGGTTCTCCACATGCGGATCAGTTG...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR TCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAGTGCAGACTAATTTCTaGGAGTCACAGCAGCAGGAA | + |
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Preference number: 2 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLVQTNF*ESQQQE Trigger: TTCCTGCTGCTGTGACTCTCAGAAATTAGTCTGCAC...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| 3UTR-3UTR TCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTACTACTGCAAGGGCATTaGGCAGAGTGCAGACTAATT | + |
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Preference number: 2 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLLLQGH*AECRLI Trigger: AATTAGTCTGCACTCTGCTCAATGCCCTTGCAGTAG...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| 3UTR-3UTR CCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTACAACTGATCCGCATGTaGAGAACCAAATTTCCCAGC | + |
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Preference number: 2 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLQLIRM*RTKFPS Trigger: GCTGGGAAATTTGGTTCTCCACATGCGGATCAGTTG...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR CCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTATGGGAGCTGGAAGACTaGTTAAAGGTATGGCCATGT | + |
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Preference number: 2 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLWELED*LKVWPC Trigger: ACATGGCCATACCTTTAACCAGTCTTCCAGCTCCCA...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR CCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTCCGCTGATAATCTTCTaGAGAAGAAAAGGACCTCTG | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCPLIIF*RRKGPL Trigger: CAGAGGTCCTTTTCTTCTCCAGAAGATTATCAGCGG...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214923.2 |
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| 3UTR-3UTR TCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAGACCCATATGCCTTCTaGGTGCTAAGACAATGTAAC | + |
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Preference number: 2 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLDPYAF*VLRQCN Trigger: GTTACATTGTCTTAGCACTCAGAAGGCATATGGGTC...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| 3UTR-3UTR TCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTGAAATGACTATGCTGTaGCTCACTGTAACACACACA | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCEMTML*LTVTHT Trigger: TGTGTGTGTTACAGTGAGTCACAGCATAGTCATTTC...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| 3UTR-3UTR GCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAGTGCATCTTAGAAGCTaGTGCAGGTCGATAAAAGCT | + |
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Preference number: 2 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLVHLRS*CRSIKA Trigger: AGCTTTTATCGACCTGCAGCAGCTTCTAAGATGCAC...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTAACACTGTTCATCACTaGTTGCCGCTGATAATCTTC | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCNTVHH*LPLIIF Trigger: GAAGATTATCAGCGGCAAGCAGTGATGAACAGTGTT...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214923.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTCAAACTGCTTCAGTTTaGCATCTTTATCTTTCGGGA | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCQTASV*HLYLSG Trigger: TCCCGAAAGATAAAGATGGCAAACTGAAGCAGTTTG...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214923.2 |
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| 3UTR-3UTR CCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTTCGCTTCAAGGAAGTTaGTCTAGAAGATGCATGTTA | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCSLQGS*SRRCML Trigger: TAACATGCATCTTCTAGACCAACTTCCTTGAAGCGA...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| 3UTR-3UTR TCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTAGAGCAACAGGATCTTaGAACATGGAAGTTTTGTTA | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCRATGS*NMEVLL Trigger: TAACAAAACTTCCATGTTTCAAGATCCTGTTGCTCT...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR TCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTAAATTTCCCAGCATATaGCATCTGTCTGAAAACACT | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCKFPSI*HLSENT Trigger: AGTGTTTTCAGACAGATGTCATATGCTGGGAAATTT...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR CCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAACAGGTGGAAAATTGTaGGATTACTCTGTACAGCTT | + |
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Preference number: 2 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLTGGKL*DYSVQL Trigger: AAGCTGTACAGAGTAATCCCACAATTTTCCACCTGT...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR CCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAGTCTATACAGAGCTGTaGGATAGCAAGAACTACAAA | + |
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Preference number: 2 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLVYTEL*DSKNYK Trigger: TTTGTAGTTCTTGCTATCCCACAGCTCTGTATAGAC...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| 3UTR-3UTR TCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAAGAGCAACAGGATCTTaGAACATGGAAGTTTTGTTA | + |
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Preference number: 2 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLRATGS*NMEVLL Trigger: TAACAAAACTTCCATGTTTCAAGATCCTGTTGCTCT...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTTACAAAATGAAACCCTaGCTCGAAAAAGATAAGGAA | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCYKMKP*LEKDKE Trigger: TTCCTTATCTTTTTCGAGGCAGGGTTTCATTTTGTA...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| 3UTR-3UTR CCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTTTTTTCAAAGACAGGTaGAAAATTGTGGGATTACTC | + |
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Preference number: 2 (lower is better) Translates to: LVSVWMRATSHLYYCPFCFFKDR*KIVGLL Trigger: GAGTAATCCCACAATTTTCCACCTGTCTTTGAAAAA...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR CCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTATTTTTCAAAGACAGGTaGAAAATTGTGGGATTACTC | + |
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Preference number: 2 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLFFKDR*KIVGLL Trigger: GAGTAATCCCACAATTTTCCACCTGTCTTTGAAAAA...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR CCA 72 bp | TCGGGATTTTCACTTTTATTACCGGCCCAGCCTGTATaGTCAGATGTCAGGAGATGCAGGCAGGAGGACCAG | + |
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Preference number: 3 (lower is better) Translates to: SGFSLLLPAQPV*SDVRRCRQEDQ Trigger: CTGGTCCTCCTGCCTGCATCTCCTGACATCTGACCATACAGGCTGGGCCGGTAATAAAAGTGAAAATCCCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214923.2 |
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| 3UTR CCA 72 bp | CCTGTAAACAGTGTCCTTGGAATGCTTGTTAGTGTCTaGATGAGGGCCACTTCCCACCTCTACTACTGTCCC | + |
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Preference number: 3 (lower is better) Translates to: PVNSVLGMLVSV*MRATSHLYYCP Trigger: GGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAGCATTCCAAGGACACTGTTTACAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR CAA 90 bp | CATGATGCTGGGGATATGACACACTGGCATCCTGAGAGGCGTGACTGCTTCCTGAAGACAGGTGGAAAATaGTGGGATTACTCTGTACAG | + |
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Preference number: 3 (lower is better) Translates to: HDAGDMTHWHPERRDCFLKTGGK*WDYSVQ Trigger: CTGTACAGAGTAATCCCACAATTTTCCACCTGTCTT...CAGGAAGCAGTCACGCCTCTCAGGATGCCAGTGTGTCATATCCCCAGCATCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214923.2 |
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| 3UTR-3UTR CAA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTGATGGTGACACACTCTaGTATGAACCTTCCTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: LVSVWMRATSHLYYCPFCDGDTL*YEPSSS Trigger: TGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATC...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR CAA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAAGCAGCAGGAATAGGTaGTGCATCTTAGAAGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLSSRNR*CILEAA Trigger: AGCAGCTTCTAAGATGCACAACCTATTCCTGCTGCT...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| 3UTR-3UTR CAA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAACTACTGCAAGGGCATaGAGCAGAGTGCAGACTAAT | + |
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Preference number: 3 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLTTARA*SRVQTN Trigger: ATTAGTCTGCACTCTGCTCAATGCCCTTGCAGTAGT...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| 3UTR-3UTR CAA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAGATGGTGACACACTCTaGTATGAACCTTCCTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLDGDTL*YEPSSS Trigger: TGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATC...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR CAA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAAAGACAGGTGGAAAATaGTGGGATTACTCTGTACAG | + |
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Preference number: 3 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLKTGGK*WDYSVQ Trigger: CTGTACAGAGTAATCCCACAATTTTCCACCTGTCTT...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| 3UTR-3UTR CAA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTATTCTTAGAAACAGTTTaGCAGTCAAAGAGCAACAGG | + |
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Preference number: 3 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLFLETV*QSKSNR Trigger: CCTGTTGCTCTTTGACTGCAAAACTGTTTCTAAGAA...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 ENSMUST00000214923.2 |
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| CDS-3UTR CCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAACCGGCCCAGCCTGGTaGAACAGCTCGAAGAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLTGPAW*NSSKRS Trigger: GCTCCTCTTCGAGCTGTTCCACCAGGCTGGGCCGGT...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 |
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| CDS-3UTR CCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTATTACCGGCCCAGCCTaGTGGAACAGCTCGAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LVSVWMRATSHLYYCPFCITGPA*WNSSKR Trigger: CCTCTTCGAGCTGTTCCACCAGGCTGGGCCGGTAAT...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| CDS-3UTR CCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAATTACCGGCCCAGCCTaGTGGAACAGCTCGAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLITGPA*WNSSKR Trigger: CCTCTTCGAGCTGTTCCACCAGGCTGGGCCGGTAAT...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 |
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| CDS-3UTR CCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAGGGGATATGACACACTaGCATCCTGAGAGGCGTGAC | + |
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Preference number: 4 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLGDMTH*HPERRD Trigger: GTCACGCCTCTCAGGATGCCAGTGTGTCATATCCCC...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 |
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| CDS-3UTR TCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTATGATGCTGGGGATATaGCACACTGGCATCCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: LVSVWMRATSHLYYCPFCMMLGI*HTGILR Trigger: TCTCAGGATGCCAGTGTGTCATATCCCCAGCATCAT...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| CDS-3UTR TCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAATGATGCTGGGGATATaGCACACTGGCATCCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLMMLGI*HTGILR Trigger: TCTCAGGATGCCAGTGTGTCATATCCCCAGCATCAT...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 |
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| CDS-3UTR TCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAGTATGGCCATGTGGTTaGGCTGATGGTGAAAATCCC | + |
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Preference number: 4 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLVWPCG*ADGENP Trigger: GGGATTTTCACCATCAGCTCAACCACATGGCCATAC...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170000.4 |
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| CDS-3UTR CCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTACCGCTGATAATCTTCTaGAGAAGAAAAGGACCTCTG | + |
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Preference number: 4 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLPLIIF*RRKGPL Trigger: CAGAGGTCCTTTTCTTCTCCAGAAGATTATCAGCGG...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 |
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| CDS-3UTR TCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAGGCGTGACTGCTTCCTaGTCTAAACTGAATTTTGAT | + |
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Preference number: 4 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLGVTAS*SKLNFD Trigger: ATCAAAATTCAGTTTAGATCAGGAAGCAGTCACGCC...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 |
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| CDS-3UTR GCA 90 bp | CTTGTTAGTGTCTGGATGAGGGCCACTTCCCACCTCTACTACTGTCCCTTCTGTTTTGAAGTTCACGAATaGAAACTGCTTCAGTTTGCC | + |
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Preference number: 4 (lower is better) Translates to: LVSVWMRATSHLYYCPFCFEVHE*KLLQFA Trigger: GGCAAACTGAAGCAGTTTGCATTCGTGAACTTCAAA...ACAGAAGGGACAGTAGTAGAGGTGGGAAGTGGCCCTCATCCAGACACTAACAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| CDS-3UTR GCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAAACACTGTTCATCACTaGTTGCCGCTGATAATCTTC | + |
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Preference number: 4 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLNTVHH*LPLIIF Trigger: GAAGATTATCAGCGGCAAGCAGTGATGAACAGTGTT...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170000.4 |
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| CDS-3UTR GCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTACAAACTGCTTCAGTTTaGCATCTTTATCTTTCGGGA | + |
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Preference number: 4 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLQTASV*HLYLSG Trigger: TCCCGAAAGATAAAGATGGCAAACTGAAGCAGTTTG...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 |
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| CDS-3UTR GCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTATTTGAAGTTCACGAATaGAAACTGCTTCAGTTTGCC | + |
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Preference number: 4 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLFEVHE*KLLQFA Trigger: GGCAAACTGAAGCAGTTTGCATTCGTGAACTTCAAA...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 |
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| CDS-3UTR TCA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAAAATTTCCCAGCATATaGCATCTGTCTGAAAACACT | + |
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Preference number: 4 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLKFPSI*HLSENT Trigger: AGTGTTTTCAGACAGATGTCATATGCTGGGAAATTT...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170000.4 |
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| CDS-3UTR CAA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTACCTGCCTACCACTGCTaGCCGCTGATAATCTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLPAYHC*PLIIFW Trigger: CCAGAAGATTATCAGCGGCAAGCAGTGGTAGGCAGG...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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| CDS-3UTR CAA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAACTGTTCATCACTGCTaGCCGCTGATAATCTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLTVHHC*PLIIFW Trigger: CCAGAAGATTATCAGCGGCAAGCAGTGATGAACAGT...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170000.4 |
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| CDS-3UTR CAA 90 bp | CGGGATGGTGACACACTCTTGTATGAACCTTCCTCTTCAGAACCCCTGAGGTTAACAGACACTTCATGTTaGAAGTTCACGAATGCAAAC | + |
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Preference number: 5 (lower is better) Translates to: RDGDTLLYEPSSSEPLRLTDTSC*KFTNAN Trigger: GTTTGCATTCGTGAACTTCAAACATGAAGTGTCTGT...TAACCTCAGGGGTTCTGAAGAGGAAGGTTCATACAAGAGTGTGTCACCATCCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000170000.4 ENSMUST00000213276.2 |
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| CDS CCA 72 bp | AGACCTGCCTACCACTGCTTGCCGCTGATAATCTTCTaGAGAAGAAAAGGACCTCTGGACCATCTGAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: RPAYHCLPLIIF*RRKGPLDHLSC Trigger: ACAGCTCAGATGGTCCAGAGGTCCTTTTCTTCTCCAGAAGATTATCAGCGGCAAGCAGTGGTAGGCAGGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213276.2 |
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