Pregenerated sensors for RBM6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032582Ensembl transcript IDs: ENSMUST00000035201.13, ENSMUST00000181986.8, ENSMUST00000183032.8, ENSMUST00000194436.2, ENSMUST00000195883.6
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCCTCATCCGCCCTTCAATCTCCTCTGATGAACCCAATCCAGGATaGCTATATCCCAGGCCCGCCCCTTTCCTCCAGCCAGTGGCCTGC | + |
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Preference number: 1 (lower is better) Translates to: PLIRPSISSDEPNPG*LYPRPAPFLQPVAC Trigger: GCAGGCCACTGGCTGGAGGAAAGGGGCGGGCCTGGGATATAGCCATCCTGGATTGGGTTCATCAGAGGAGATTGAAGGGCGGATGAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 90 bp | GGATGGCTATATCCCAGGCCCGCCCCTTTCCTCCAGCCAGTGGCCTaGTGGGCACAGCCTCCTTTGCTACTAGTGTCAGTGTCTTCTTTA | + |
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Preference number: 1 (lower is better) Translates to: GWLYPRPAPFLQPVA*WAQPPLLLVSVSSL Trigger: TAAAGAAGACACTGACACTAGTAGCAAAGGAGGCTGTGCCCAGCAGGCCACTGGCTGGAGGAAAGGGGCGGGCCTGGGATATAGCCATCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 90 bp | CGTCTTCATTCTCTTTCTTGGTCATTTCCTCGCGAGGCTGTGCTGTaGGAGGCTGCACAGGAGGAGCCTGTTCCTCTTCTTCCTCTTCCT | + |
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Preference number: 1 (lower is better) Translates to: RLHSLSWSFPREAVL*EAAQEEPVPLLPLP Trigger: AGGAAGAGGAAGAAGAGGAACAGGCTCCTCCTGTGCAGCCTCGCACAGCACAGCCTCGCGAGGAAATGACCAAGAAAGAGAATGAAGACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 90 bp | TTTGTCGTCTTCATTCTCTTTCTTGGTCATTTCCTCGCGAGGCTGTaGTGTGCGAGGCTGCACAGGAGGAGCCTGTTCCTCTTCTTCCTC | + |
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Preference number: 1 (lower is better) Translates to: FVVFILFLGHFLARL*CARLHRRSLFLFFL Trigger: GAGGAAGAAGAGGAACAGGCTCCTCCTGTGCAGCCTCGCACAGCACAGCCTCGCGAGGAAATGACCAAGAAAGAGAATGAAGACGACAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR TCA 90 bp | TCTTCTGATGTCCTAATCTTGACTCTTGGCCTTCCTCCCGTTTCCTaGGTTCATGCTCCTTATCAGCAGGTCGTGGCTGGTTGGGCTGTT | + |
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Preference number: 1 (lower is better) Translates to: SSDVLILTLGLPPVS*VHAPYQQVVAGWAV Trigger: AACAGCCCAACCAGCCACGACCTGCTGATAAGGAGCATGAACTCAGGAAACGGGAGGAAGGCCAAGAGTCAAGATTAGGACATCAGAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 90 bp | TGTCCTAATCTTGACTCTTGGCCTTCCTCCCGTTTCCTGAGTTCATaGTCCTTATCAGCAGGTCGTGGCTGGTTGGGCTGTTTTTCTGAA | + |
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Preference number: 1 (lower is better) Translates to: CPNLDSWPSSRFLSS*SLSAGRGWLGCFSE Trigger: TTCAGAAAAACAGCCCAACCAGCCACGACCTGCTGATAAGGAGCATGAACTCAGGAAACGGGAGGAAGGCCAAGAGTCAAGATTAGGACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 90 bp | TGGTGGATCAAGGTTCTGCAAAATCTTCACTACTCGAAGAGCTTCTaGATGGGAGTCAAGGTCTATAAAACCGTAAGTGTGACCCATGGG | + |
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Preference number: 1 (lower is better) Translates to: WWIKVLQNLHYSKSF*MGVKVYKTVSVTHG Trigger: CCCATGGGTCACACTTACGGTTTTATAGACCTTGACTCCCATGCAGAAGCTCTTCGAGTAGTGAAGATTTTGCAGAACCTTGATCCACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 90 bp | ACAGCTACCATCTTCCCATCAATGCTAAATGGTGGATCAAGGTTCTaGAAAATCTTCACTACTCGAAGAGCTTCTGCATGGGAGTCAAGG | + |
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Preference number: 1 (lower is better) Translates to: TATIFPSMLNGGSRF*KIFTTRRASAWESR Trigger: CCTTGACTCCCATGCAGAAGCTCTTCGAGTAGTGAAGATTTTGCAGAACCTTGATCCACCATTTAGCATTGATGGGAAGATGGTAGCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 90 bp | GGGCACATAGACTTCTTGCTGGGTGTTGGGATCATAGTAAGTTCCTaGCAAGGGGTCATAATAGTAGCCAGTAGTAGAATCATATATGTA | + |
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Preference number: 1 (lower is better) Translates to: GHIDFLLGVGIIVSS*QGVIIVASSRIIYV Trigger: TACATATATGATTCTACTACTGGCTACTATTATGACCCCTTGGCAGGAACTTACTATGATCCCAACACCCAGCAAGAAGTCTATGTGCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR TCA 90 bp | GTGACTCAGGGTCCTGGGGCACATAGACTTCTTGCTGGGTGTTGGGATCATAGTCTCCCCATCCTGGCGTaGATCTCCAGACCATGGCTC | + |
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Preference number: 2 (lower is better) Translates to: VTQGPGAHRLLAGCWDHSLPILA*ISRPWL Trigger: GAGCCATGGTCTGGAGATTCACGCCAGGATGGGGAG...ACTATGATCCCAACACCCAGCAAGAAGTCTATGTGCCCCAGGACCCTGAGTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CCA 90 bp | CAATCCAGGATGGCTATATCCCAGGCCCGCCCCTTTCCTCCAGCCAGTGGCCTGCTTCATTCTCTTTCTTaGTCATTTCCTCGCGAGGCT | + |
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Preference number: 2 (lower is better) Translates to: QSRMAISQARPFPPASGLLHSLS*SFPREA Trigger: AGCCTCGCGAGGAAATGACCAAGAAAGAGAATGAAG...CAGGCCACTGGCTGGAGGAAAGGGGCGGGCCTGGGATATAGCCATCCTGGATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR GCA 90 bp | AGGCTGTGCTGTGCGAGGCTGCACAGGAGGAGCCTGTTCCTCTTCTTCCTCTTCTACTCGAAGAGCTTCTaGATGGGAGTCAAGGTCTAT | + |
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Preference number: 2 (lower is better) Translates to: RLCCARLHRRSLFLFFLFYSKSF*MGVKVY Trigger: ATAGACCTTGACTCCCATGCAGAAGCTCTTCGAGTA...GAAGAGGAAGAAGAGGAACAGGCTCCTCCTGTGCAGCCTCGCACAGCACAGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR TCA 90 bp | TCATCCGCCCTTCAATCTCCTCTGATGAACCCAATCCAGGATGGCTATATCCCATTCTTCTTCATCAGGTaGCTCAGGGTCCTGGGGCAC | + |
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Preference number: 2 (lower is better) Translates to: SSALQSPLMNPIQDGYIPFFFIR*LRVLGH Trigger: GTGCCCCAGGACCCTGAGTCACCTGATGAAGAAGAA...TGGGATATAGCCATCCTGGATTGGGTTCATCAGAGGAGATTGAAGGGCGGATGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR GCA 90 bp | CCATGGCTCCTTTTCCCGGTCTCTTCGGAAAGTAAGCCCTTCCCTTCGAGAGTGCGTTTCCTGAGTTCATaGTCCTTATCAGCAGGTCGT | + |
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Preference number: 2 (lower is better) Translates to: PWLLFPVSSESKPFPSRVRFLSS*SLSAGR Trigger: ACGACCTGCTGATAAGGAGCATGAACTCAGGAAACG...CACTCTCGAAGGGAAGGGCTTACTTTCCGAAGAGACCGGGAAAAGGAGCCATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CCA 90 bp | GTGACTCAGGGTCCTGGGGCACATAGACTTCTTGCTGGGTGTTGGGATCATAGTCAGGTCGTGGCTGGTTaGGCTGTTTTTCTGAAGGTA | + |
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Preference number: 2 (lower is better) Translates to: VTQGPGAHRLLAGCWDHSQVVAG*AVFLKV Trigger: TACCTTCAGAAAAACAGCCCAACCAGCCACGACCTG...ACTATGATCCCAACACCCAGCAAGAAGTCTATGTGCCCCAGGACCCTGAGTCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR CAA 90 bp | GCCAGTTTATTCCAGTCAGTGAGTTTGTCGTCTTCATTCTCTTTCTaGGTCATTTCCTCGCGAGGCTGTGCTGTGCGAGGCTGCACAGGA | + |
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Preference number: 2 (lower is better) Translates to: ASLFQSVSLSSSFSF*VISSRGCAVRGCTG Trigger: TCCTGTGCAGCCTCGCACAGCACAGCCTCGCGAGGAAATGACCAAGAAAGAGAATGAAGACGACAAACTCACTGACTGGAATAAACTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CCA 90 bp | GTGACTCAGGGTCCTGGGGCACATAGACTTCTTGCTGGGTGTTGGGATCATAGTTCACTTCGGGTGGAGTaGAACGATAGATACGCTTTA | + |
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Preference number: 2 (lower is better) Translates to: VTQGPGAHRLLAGCWDHSSLRVE*NDRYAL Trigger: TAAAGCGTATCTATCGTTCCACTCCACCCGAAGTGA...ACTATGATCCCAACACCCAGCAAGAAGTCTATGTGCCCCAGGACCCTGAGTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR TCA 90 bp | CCAGACCATGGCTCCTTTTCCCGGTCTCTTCGGAAAGTAAGCCCTTCCCTTCGATCTGTATCTCTCTTCTaGTGTCCTAATCTTGACTCT | + |
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Preference number: 2 (lower is better) Translates to: PDHGSFSRSLRKVSPSLRSVSLF*CPNLDS Trigger: AGAGTCAAGATTAGGACATCAGAAGAGAGATACAGA...TCGAAGGGAAGGGCTTACTTTCCGAAGAGACCGGGAAAAGGAGCCATGGTCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR GCA 90 bp | GTGACTCAGGGTCCTGGGGCACATAGACTTCTTGCTGGGTGTTGGGATCATAGTTCAGATGATGACTGTTaGCCTTGTCGATTTGTATCT | + |
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Preference number: 2 (lower is better) Translates to: VTQGPGAHRLLAGCWDHSSDDDC*PCRFVS Trigger: AGATACAAATCGACAAGGGCAACAGTCATCATCTGA...ACTATGATCCCAACACCCAGCAAGAAGTCTATGTGCCCCAGGACCCTGAGTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGAATCATTTCTTCGTTTTCCAGTGGCCAGGTTTACAGCTACCATCTTCCCATTACTCTCCCCATCCTaGCGTGAATCTCCAGACCAT | + |
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Preference number: 2 (lower is better) Translates to: PESFLRFPVARFTATIFPLLSPS*RESPDH Trigger: ATGGTCTGGAGATTCACGCCAGGATGGGGAGAGTAA...TGGGAAGATGGTAGCTGTAAACCTGGCCACTGGAAAACGAAGAAATGATTCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CCA 90 bp | AATGGTCCCCAGAATCATTTCTTCGTTTTCCAGTGGCCAGGTTTACAGCTACCAGACTATCACTTCGGGTaGAGTGGAACGATAGATACG | + |
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Preference number: 2 (lower is better) Translates to: NGPQNHFFVFQWPGLQLPDYHFG*SGTIDT Trigger: CGTATCTATCGTTCCACTCCACCCGAAGTGATAGTC...TGGTAGCTGTAAACCTGGCCACTGGAAAACGAAGAAATGATTCTGGGGACCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CCA 90 bp | GTCGGACAGTTGTTGGTGTTTCGTAAGAACTTCTTTATTGGGAAACTGCCTTCTTCAGCAGGTCGTGGCTaGTTGGGCTGTTTTTCTGAA | + |
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Preference number: 2 (lower is better) Translates to: VGQLLVFRKNFFIGKLPSSAGRG*LGCFSE Trigger: TTCAGAAAAACAGCCCAACCAGCCACGACCTGCTGA...AGAAGGCAGTTTCCCAATAAAGAAGTTCTTACGAAACACCAACAACTGTCCGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR GCA 90 bp | TCATCCGCCCTTCAATCTCCTCTGATGAACCCAATCCAGGATGGCTATATCCCAATCATAGTAAGTTCCTaGCAAGGGGTCATAATAGTA | + |
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Preference number: 2 (lower is better) Translates to: SSALQSPLMNPIQDGYIPIIVSS*QGVIIV Trigger: TACTATTATGACCCCTTGGCAGGAACTTACTATGAT...TGGGATATAGCCATCCTGGATTGGGTTCATCAGAGGAGATTGAAGGGCGGATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CCA 90 bp | GATTTGTATCTGAAGACCAGTCTGAATTTCTGTTTCCTCCTCTCCTATCTCGAACTTATCAGCAGGTCGTaGCTGGTTGGGCTGTTTTTC | + |
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Preference number: 2 (lower is better) Translates to: DLYLKTSLNFCFLLSYLELISRS*LVGLFF Trigger: GAAAAACAGCCCAACCAGCCACGACCTGCTGATAAG...TTCGAGATAGGAGAGGAGGAAACAGAAATTCAGACTGGTCTTCAGATACAAATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR GCA 90 bp | TTTGTATCTGAAGACCAGTCTGAATTTCTGTTTCCTCCTCTCCTATCTCGAAAAGGTGGATCAAGGTTCTaGAAAATCTTCACTACTCGA | + |
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Preference number: 2 (lower is better) Translates to: FVSEDQSEFLFPPLLSRKGGSRF*KIFTTR Trigger: TCGAGTAGTGAAGATTTTGCAGAACCTTGATCCACC...TTTTCGAGATAGGAGAGGAGGAAACAGAAATTCAGACTGGTCTTCAGATACAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR TCA 90 bp | TTTGTATCTGAAGACCAGTCTGAATTTCTGTTTCCTCCTCTCCTATCTCGAAAAAGATACGCTTTAGCATaGTTGTTTTACTCTCCCCAT | + |
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Preference number: 2 (lower is better) Translates to: FVSEDQSEFLFPPLLSRKRYALA*LFYSPH Trigger: ATGGGGAGAGTAAAACAATCATGCTAAAGCGTATCT...TTTTCGAGATAGGAGAGGAGGAAACAGAAATTCAGACTGGTCTTCAGATACAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 72 bp | TATCCCAGGCCCGCCCCTTTCCTCCAGCCAGTGGCCTaGTGGGCACAGCCTCCTTTGCTACTAGTGTCAGTG | + |
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Preference number: 3 (lower is better) Translates to: YPRPAPFLQPVA*WAQPPLLLVSV Trigger: CACTGACACTAGTAGCAAAGGAGGCTGTGCCCAGCAGGCCACTGGCTGGAGGAAAGGGGCGGGCCTGGGATA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 72 bp | TTGGTCATTTCCTCGCGAGGCTGTGCTGTGCGAGGCTaGACAGGAGGAGCCTGTTCCTCTTCTTCCTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: LVISSRGCAVRG*TGGACSSSSSS Trigger: GGAAGAGGAAGAAGAGGAACAGGCTCCTCCTGTGCAGCCTCGCACAGCACAGCCTCGCGAGGAAATGACCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR CCA 72 bp | CGCCCTTCAATCTCCTCTGATGAACCCAATCCAGGATaGCTATATCCCAGGCCCGCCCCTTTCCTCCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: RPSISSDEPNPG*LYPRPAPFLQP Trigger: TGGCTGGAGGAAAGGGGCGGGCCTGGGATATAGCCATCCTGGATTGGGTTCATCAGAGGAGATTGAAGGGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CAA 90 bp | CAATCCAGGATGGCTATATCCCAGGCCCGCCCCTTTCCTCCAGCCAGTGGCCTGTCTTCATTCTCTTTCTaGGTCATTTCCTCGCGAGGC | + |
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Preference number: 3 (lower is better) Translates to: QSRMAISQARPFPPASGLSSFSF*VISSRG Trigger: GCCTCGCGAGGAAATGACCAAGAAAGAGAATGAAGA...CAGGCCACTGGCTGGAGGAAAGGGGCGGGCCTGGGATATAGCCATCCTGGATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 72 bp | TTCATTCTCTTTCTTGGTCATTTCCTCGCGAGGCTGTaGTGTGCGAGGCTGCACAGGAGGAGCCTGTTCCTC | + |
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Preference number: 3 (lower is better) Translates to: FILFLGHFLARL*CARLHRRSLFL Trigger: GAGGAACAGGCTCCTCCTGTGCAGCCTCGCACAGCACAGCCTCGCGAGGAAATGACCAAGAAAGAGAATGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CAA 90 bp | ATGCACGTAGGGCTCCAGCACTTCGACTATCACTTCGGGTGGAGTGGAACGATAGCAGGTCGTGGCTGGTaGGGCTGTTTTTCTGAAGGT | + |
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Preference number: 3 (lower is better) Translates to: MHVGLQHFDYHFGWSGTIAGRGW*GCFSEG Trigger: ACCTTCAGAAAAACAGCCCAACCAGCCACGACCTGC...TATCGTTCCACTCCACCCGAAGTGATAGTCGAAGTGCTGGAGCCCTACGTGCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CAA 90 bp | GACCACCCCCAGGTCCCCTCATCCGCCCTTCAATCTCCTCTGATGAACCCAATCCTCACTGGTACTTTCTaGAAACTTTGTCATTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: DHPQVPSSALQSPLMNPILTGTF*KLCHSS Trigger: AGAGGAATGACAAAGTTTCAAGAAAGTACCAGTGAG...GATTGGGTTCATCAGAGGAGATTGAAGGGCGGATGAGGGGACCTGGGGGTGGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR CCA 72 bp | ACTGTCTCCTCCATATTCACCCAGGAGACCAATCAGTaGATTTACCACCTTAGGTGGAGGAGGACTCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: TVSSIFTQETNQ*IYHLRWRRTLF Trigger: GAAGAGAGTCCTCCTCCACCTAAGGTGGTAAATCCACTGATTGGTCTCCTGGGTGAATATGGAGGAGACAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR CCA 72 bp | TTCCTGAGTTCATGCTCCTTATCAGCAGGTCGTGGCTaGTTGGGCTGTTTTTCTGAAGGTACTGGTATGGAT | + |
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Preference number: 3 (lower is better) Translates to: FLSSCSLSAGRG*LGCFSEGTGMD Trigger: ATCCATACCAGTACCTTCAGAAAAACAGCCCAACCAGCCACGACCTGCTGATAAGGAGCATGAACTCAGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CAA 90 bp | CCAGAATCATTTCTTCGTTTTCCAGTGGCCAGGTTTACAGCTACCATCTTCCCATCTGATGTCCTAATCTaGACTCTTGGCCTTCCTCCC | + |
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Preference number: 3 (lower is better) Translates to: PESFLRFPVARFTATIFPSDVLI*TLGLPP Trigger: GGGAGGAAGGCCAAGAGTCAAGATTAGGACATCAGA...TGGGAAGATGGTAGCTGTAAACCTGGCCACTGGAAAACGAAGAAATGATTCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CAA 90 bp | AATGGTCCCCAGAATCATTTCTTCGTTTTCCAGTGGCCAGGTTTACAGCTACCAAAAACAAAGAGGAAATaGTGTCCTGCGGGGTGTCTC | + |
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Preference number: 3 (lower is better) Translates to: NGPQNHFFVFQWPGLQLPKTKRK*CPAGCL Trigger: GAGACACCCCGCAGGACACAATTTCCTCTTTGTTTT...TGGTAGCTGTAAACCTGGCCACTGGAAAACGAAGAAATGATTCTGGGGACCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 72 bp | GACTTCTTGCTGGGTGTTGGGATCATAGTAAGTTCCTaGCAAGGGGTCATAATAGTAGCCAGTAGTAGAATC | + |
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Preference number: 3 (lower is better) Translates to: DFLLGVGIIVSS*QGVIIVASSRI Trigger: GATTCTACTACTGGCTACTATTATGACCCCTTGGCAGGAACTTACTATGATCCCAACACCCAGCAAGAAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR-3UTR CAA 90 bp | TTTGTATCTGAAGACCAGTCTGAATTTCTGTTTCCTCCTCTCCTATCTCGAAAATTGATGATGCGGACATaGGCAGTAGTGAGATGCACG | + |
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Preference number: 3 (lower is better) Translates to: FVSEDQSEFLFPPLLSRKLMMRT*AVVRCT Trigger: CGTGCATCTCACTACTGCCAATGTCCGCATCATCAA...TTTTCGAGATAGGAGAGGAGGAAACAGAAATTCAGACTGGTCTTCAGATACAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 72 bp | AAGGTTCTGCAAAATCTTCACTACTCGAAGAGCTTCTaGATGGGAGTCAAGGTCTATAAAACCGTAAGTGTG | + |
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Preference number: 3 (lower is better) Translates to: KVLQNLHYSKSF*MGVKVYKTVSV Trigger: CACACTTACGGTTTTATAGACCTTGACTCCCATGCAGAAGCTCTTCGAGTAGTGAAGATTTTGCAGAACCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR GCA 72 bp | ATCTTCCCATCAATGCTAAATGGTGGATCAAGGTTCTaGAAAATCTTCACTACTCGAAGAGCTTCTGCATGG | + |
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Preference number: 3 (lower is better) Translates to: IFPSMLNGGSRF*KIFTTRRASAW Trigger: CCATGCAGAAGCTCTTCGAGTAGTGAAGATTTTGCAGAACCTTGATCCACCATTTAGCATTGATGGGAAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR CCA 72 bp | CAGGTTTACAGCTACCATCTTCCCATCAATGCTAAATaGTGGATCAAGGTTCTGCAAAATCTTCACTACTCG | + |
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Preference number: 3 (lower is better) Translates to: QVYSYHLPINAK*WIKVLQNLHYS Trigger: CGAGTAGTGAAGATTTTGCAGAACCTTGATCCACCATTTAGCATTGATGGGAAGATGGTAGCTGTAAACCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR CCA 72 bp | ATTTCCAGGTTTTGCTTGTGCAGGTCGGACAGTTGTTaGTGTTTCGTAAGAACTTCTTTATTGGGAAACTGC | + |
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Preference number: 3 (lower is better) Translates to: ISRFCLCRSDSC*CFVRTSLLGNC Trigger: GCAGTTTCCCAATAAAGAAGTTCTTACGAAACACCAACAACTGTCCGACCTGCACAAGCAAAACCTGGAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| CDS-3UTR TCA 90 bp | CAGCAGGTCGTGGCTGGTTGGGCTGTTTTTCTGAAGGTACTGGTATGGATGTTTTGGGCCCTTGCAGAATaGACAAGAAGACTGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: QQVVAGWAVFLKVLVWMFWALAE*TRRLMP Trigger: GGGCATCAGTCTTCTTGTTCATTCTGCAAGGGCCCA...AAACATCCATACCAGTACCTTCAGAAAAACAGCCCAACCAGCCACGACCTGCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR CAA 72 bp | TTCCAGTCAGTGAGTTTGTCGTCTTCATTCTCTTTCTaGGTCATTTCCTCGCGAGGCTGTGCTGTGCGAGGC | + |
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Preference number: 4 (lower is better) Translates to: FQSVSLSSSFSF*VISSRGCAVRG Trigger: GCCTCGCACAGCACAGCCTCGCGAGGAAATGACCAAGAAAGAGAATGAAGACGACAAACTCACTGACTGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| CDS-3UTR GCA 90 bp | ATGCACGTAGGGCTCCAGCACTTCGACTATCACTTCGGGTGGAGTGGAACGATACTTCCTTTGGGCCCTTaGAGAATGAACAAGAAGACT | + |
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Preference number: 4 (lower is better) Translates to: MHVGLQHFDYHFGWSGTILPLGP*RMNKKT Trigger: AGTCTTCTTGTTCATTCTGCAAGGGCCCAAAGGAAG...TATCGTTCCACTCCACCCGAAGTGATAGTCGAAGTGCTGGAGCCCTACGTGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR CAA 72 bp | CTGAGTTCATGCTCCTTATCAGCAGGTCGTGGCTGGTaGGGCTGTTTTTCTGAAGGTACTGGTATGGATGTT | + |
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Preference number: 4 (lower is better) Translates to: LSSCSLSAGRGW*GCFSEGTGMDV Trigger: AACATCCATACCAGTACCTTCAGAAAAACAGCCCAACCAGCCACGACCTGCTGATAAGGAGCATGAACTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| CDS-3UTR TCA 90 bp | CATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCATTACTCCCCATCCTGGCGTaGATCTCCAGACCATGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: HICSSQMMLHGIKSDPALLPILA*ISRPWL Trigger: GAGCCATGGTCTGGAGATTCACGCCAGGATGGGGAG...TAATGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
||
| 3UTR CAA 72 bp | TGTAGCAGTCAGATGATGACTGTTGCCCTTGTCGATTaGTATCTGAAGACCAGTCTGAATTTCTGTTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: CSSQMMTVALVD*YLKTSLNFCFL Trigger: GAGGAAACAGAAATTCAGACTGGTCTTCAGATACAAATCGACAAGGGCAACAGTCATCATCTGACTGCTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
||
| 3UTR CAA 72 bp | AATTTCCAGGTTTTGCTTGTGCAGGTCGGACAGTTGTaGGTGTTTCGTAAGAACTTCTTTATTGGGAAACTG | + |
|
Preference number: 4 (lower is better) Translates to: NFQVLLVQVGQL*VFRKNFFIGKL Trigger: CAGTTTCCCAATAAAGAAGTTCTTACGAAACACCAACAACTGTCCGACCTGCACAAGCAAAACCTGGAAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
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| 3UTR CAA 72 bp | GTGAATTTCCAGGTTTTGCTTGTGCAGGTCGGACAGTaGTTGGTGTTTCGTAAGAACTTCTTTATTGGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: VNFQVLLVQVGQ*LVFRKNFFIGK Trigger: TTTCCCAATAAAGAAGTTCTTACGAAACACCAACAACTGTCCGACCTGCACAAGCAAAACCTGGAAATTCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
||
| CDS-3UTR CCA 90 bp | AATCATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCATTACTCTCCCCATCCTaGCGTGAATCTCCAGACCAT | + |
|
Preference number: 4 (lower is better) Translates to: NHICSSQMMLHGIKSDPALLSPS*RESPDH Trigger: ATGGTCTGGAGATTCACGCCAGGATGGGGAGAGTAA...TGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
||
| CDS-3UTR TCA 90 bp | CATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCATTACCTTCCCTTCGAGAGTaGGGGAAGTATCTTTCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: HICSSQMMLHGIKSDPALPSLRE*GKYLSV Trigger: TACAGAAAGATACTTCCCTCACTCTCGAAGGGAAGG...TAATGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
||
| CDS-3UTR CCA 90 bp | AATCATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCAGACTATCACTTCGGGTaGAGTGGAACGATAGATACG | + |
|
Preference number: 4 (lower is better) Translates to: NHICSSQMMLHGIKSDPADYHFG*SGTIDT Trigger: CGTATCTATCGTTCCACTCCACCCGAAGTGATAGTC...TGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
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| CDS-3UTR GCA 90 bp | CATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCATTATACTCGAAGAGCTTCTaGATGGGAGTCAAGGTCTAT | + |
|
Preference number: 4 (lower is better) Translates to: HICSSQMMLHGIKSDPALYSKSF*MGVKVY Trigger: ATAGACCTTGACTCCCATGCAGAAGCTCTTCGAGTA...TAATGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
||
| CDS-3UTR CCA 90 bp | AATCATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCATCACTTCGGGTGGAGTaGAACGATAGATACGCTTTA | + |
|
Preference number: 4 (lower is better) Translates to: NHICSSQMMLHGIKSDPASLRVE*NDRYAL Trigger: TAAAGCGTATCTATCGTTCCACTCCACCCGAAGTGA...TGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
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| CDS-3UTR CCA 90 bp | CATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCATTATTCTTCGTTTTCCAGTaGCCAGGTTTACAGCTACCA | + |
|
Preference number: 4 (lower is better) Translates to: HICSSQMMLHGIKSDPALFFVFQ*PGLQLP Trigger: TGGTAGCTGTAAACCTGGCCACTGGAAAACGAAGAA...TAATGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
||
| CDS-3UTR GCA 90 bp | AATCATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCAGGTGGATCAAGGTTCTaGAAAATCTTCACTACTCGA | + |
|
Preference number: 4 (lower is better) Translates to: NHICSSQMMLHGIKSDPAGGSRF*KIFTTR Trigger: TCGAGTAGTGAAGATTTTGCAGAACCTTGATCCACC...TGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATGATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
||
| CDS-3UTR CCA 90 bp | AATCATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCACCCATCAATGCTAAATaGTGGATCAAGGTTCTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: NHICSSQMMLHGIKSDPAPINAK*WIKVLQ Trigger: TTGCAGAACCTTGATCCACCATTTAGCATTGATGGG...TGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATGATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
||
| CDS-3UTR TCA 90 bp | CATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCATTATCTGTATCTCTCTTCTaGTGTCCTAATCTTGACTCT | + |
|
Preference number: 4 (lower is better) Translates to: HICSSQMMLHGIKSDPALSVSLF*CPNLDS Trigger: AGAGTCAAGATTAGGACATCAGAAGAGAGATACAGA...TAATGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
||
| CDS-3UTR TCA 90 bp | CATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCATTAAGATACGCTTTAGCATaGTTGTTTTACTCTCCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: HICSSQMMLHGIKSDPALRYALA*LFYSPH Trigger: ATGGGGAGAGTAAAACAATCATGCTAAAGCGTATCT...TAATGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
||
| CDS-3UTR CAA 90 bp | CCATGGCTCCTTTTCCCGGTCTCTTCGGAAAGTAAGCCCTTCCCTTCGAGAGTGTCTTCCTTTGGGCCCTaGCAGAATGAACAAGAAGAC | + |
|
Preference number: 5 (lower is better) Translates to: PWLLFPVSSESKPFPSRVSSFGP*QNEQED Trigger: GTCTTCTTGTTCATTCTGCAAGGGCCCAAAGGAAGA...CACTCTCGAAGGGAAGGGCTTACTTTCCGAAGAGACCGGGAAAAGGAGCCATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181986.8 |
||
| CDS TCA 90 bp | CCCCTCCTTGATAGTCACCATGTGGTCCATCTCTACCTCCATAGCTaGAAGAATGCTCCTCTACATTTGCAAAGGGAGGTCCTGAATGCC | + |
|
Preference number: 5 (lower is better) Translates to: PLLDSHHVVHLYLHS*KNAPLHLQREVLNA Trigger: GGCATTCAGGACCTCCCTTTGCAAATGTAGAGGAGCATTCTTTCAGCTATGGAGGTAGAGATGGACCACATGGTGACTATCAAGGAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183032.8 |
||
| CDS TCA 90 bp | AGTTCCCTGGTTGGCCTCCATGCATCCGATGGCATCTTCCAAGAGTaGAAATTCCACGCAGACATAGCCATAGTCGTAACCTGTGTTATA | + |
|
Preference number: 5 (lower is better) Translates to: SSLVGLHASDGIFQE*KFHADIAIVVTCVI Trigger: TATAACACAGGTTACGACTATGGCTATGTCTGCGTGGAATTTTCACTCTTGGAAGATGCCATCGGATGCATGGAGGCCAACCAGGGAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
||
| CDS TCA 90 bp | TTCATGCTCCTTATCAGCAGGTCGTGGCTGGTTGGGCTGTTTTTCTaGAGGTACTGGTATGGATGTTTTCTGAGGTTGAGGATAGGACAC | + |
|
Preference number: 5 (lower is better) Translates to: FMLLISRSWLVGLFF*RYWYGCFLRLRIGH Trigger: GTGTCCTATCCTCAACCTCAGAAAACATCCATACCAGTACCTTCAGAAAAACAGCCCAACCAGCCACGACCTGCTGATAAGGAGCATGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
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| CDS CCA 90 bp | TGTCATGGATCATTAGAGTTCCCTGGTTGGCCTCCATGCATCCGATaGCATCTTCCAAGAGTGAAAATTCCACGCAGACATAGCCATAGT | + |
|
Preference number: 5 (lower is better) Translates to: CHGSLEFPGWPPCIR*HLPRVKIPRRHSHS Trigger: ACTATGGCTATGTCTGCGTGGAATTTTCACTCTTGGAAGATGCCATCGGATGCATGGAGGCCAACCAGGGAACTCTAATGATCCATGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
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| CDS CCA 90 bp | AAAGAATGCTCCTCTACATTTGCAAAGGGAGGTCCTGAATGCCCCTaGAAATCAAAGGGAAGTGAATCTCTGCCAGGAAAGTTGCCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: KECSSTFAKGGPECP*KSKGSESLPGKLPE Trigger: CTCTGGCAACTTTCCTGGCAGAGATTCACTTCCCTTTGATTTCCAGGGGCATTCAGGACCTCCCTTTGCAAATGTAGAGGAGCATTCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183032.8 |
||
| CDS CCA 90 bp | TGTATGTCCCTGTTCCTGAAGTCCAACTGTGCTGAATCTCTACTCTaGAAATCCGAAGATGAAAAATCTCCCCCTCTGAAATCGTGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: CMSLFLKSNCAESLL*KSEDEKSPPLKSCP Trigger: TGGACACGATTTCAGAGGGGGAGATTTTTCATCTTCGGATTTCCAGAGTAGAGATTCAGCACAGTTGGACTTCAGGAACAGGGACATACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000183032.8 |
||
| CDS TCA 90 bp | ATCGTTTACAGTACCAAAAATCTGGGCTTGGTACATACTCAAGAGTaGCCTCTTTGTCATGGATCATTAGAGTTCCCTGGTTGGCCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: IVYSTKNLGLVHTQE*PLCHGSLEFPGWPP Trigger: TGGAGGCCAACCAGGGAACTCTAATGATCCATGACAAAGAGGTCACTCTTGAGTATGTACCAAGCCCAGATTTTTGGTACTGTAAACGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 ENSMUST00000195883.6 |
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| CDS CCA 90 bp | ATGCCCACCAGTGCTAGCCTTACATCGTTTACAGTACCAAAAATCTaGGCTTGGTACATACTCAAGAGTGACCTCTTTGTCATGGATCAT | + |
|
Preference number: 5 (lower is better) Translates to: MPTSASLTSFTVPKI*AWYILKSDLFVMDH Trigger: ATGATCCATGACAAAGAGGTCACTCTTGAGTATGTACCAAGCCCAGATTTTTGGTACTGTAAACGATGTAAGGCTAGCACTGGTGGGCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 ENSMUST00000195883.6 |
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| CDS TCA 90 bp | GCCAAGAAAGTCCAAATCACCTTCTTCTTTAAACAGACCAGCATCTaGACTCTGTTGTTCACCTCCAGAAAGCTTTGGCTTATCTTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: AKKVQITFFFKQTSI*TLLFTSRKLWLILF Trigger: GAACAAGATAAGCCAAAGCTTTCTGGAGGTGAACAACAGAGTTCAGATGCTGGTCTGTTTAAAGAAGAAGGTGATTTGGACTTTCTTGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
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| CDS GCA 90 bp | AAATCTGGTTTCCTGGCAACCTGTGATCCACATCACAGTATTCAATaGTTCTGTAATCAGTGTCTTGTTGGCCAAGAAAGTCCAAATCAC | + |
|
Preference number: 5 (lower is better) Translates to: KSGFLATCDPHHSIQ*FCNQCLVGQESPNH Trigger: GTGATTTGGACTTTCTTGGCCAACAAGACACTGATTACAGAAGCATTGAATACTGTGATGTGGATCACAGGTTGCCAGGAAACCAGATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
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| CDS-3UTR CAA 90 bp | CATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCATTATCTGATGTCCTAATCTaGACTCTTGGCCTTCCTCCC | + |
|
Preference number: 5 (lower is better) Translates to: HICSSQMMLHGIKSDPALSDVLI*TLGLPP Trigger: GGGAGGAAGGCCAAGAGTCAAGATTAGGACATCAGA...TAATGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
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| CDS-3UTR CAA 90 bp | AATCATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCATTGATGATGCGGACATaGGCAGTAGTGAGATGCACG | + |
|
Preference number: 5 (lower is better) Translates to: NHICSSQMMLHGIKSDPALMMRT*AVVRCT Trigger: CGTGCATCTCACTACTGCCAATGTCCGCATCATCAA...TGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
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| CDS GCA 90 bp | ATGCTCAAATTCTCCCTTCTGAACACCAAAAGCAGGTCTTTCCATTaGATGGTCATGTATGGATTCTTCTCTCTTGTTCATATTCATACC | + |
|
Preference number: 5 (lower is better) Translates to: MLKFSLLNTKSRSFH*MVMYGFFSLVHIHT Trigger: GGTATGAATATGAACAAGAGAGAAGAATCCATACATGACCATGCAATGGAAAGACCTGCTTTTGGTGTTCAGAAGGGAGAATTTGAGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
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| CDS CCA 90 bp | ATGTTCTCTCTCTTGTGGAGAAGGCTGAATGTAATCCAAAACTTTTaGATCCATAGGAGGCATCTCCCTATCTTTAAATTCCATACAAGG | + |
|
Preference number: 5 (lower is better) Translates to: MFSLLWRRLNVIQNF*IHRRHLPIFKFHTR Trigger: CCTTGTATGGAATTTAAAGATAGGGAGATGCCTCCTATGGATCCAAAAGTTTTGGATTACATTCAGCCTTCTCCACAAGAGAGAGAACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
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| CDS CCA 90 bp | CCTTCTGAACACCAAAAGCAGGTCTTTCCATTGCATGGTCATGTATaGATTCTTCTCTCTTGTTCATATTCATACCAGAATGTTCTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: PSEHQKQVFPLHGHV*ILLSCSYSYQNVLS Trigger: AGAGAGAACATTCTGGTATGAATATGAACAAGAGAGAAGAATCCATACATGACCATGCAATGGAAAGACCTGCTTTTGGTGTTCAGAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
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| CDS-3UTR CAA 90 bp | AATCATATATGTAGCAGTCAGATGATGCTACATGGAATAAAATCAGATCCAGCAGTTGCCCTTGTCGATTaGTATCTGAAGACCAGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: NHICSSQMMLHGIKSDPAVALVD*YLKTSL Trigger: CAGACTGGTCTTCAGATACAAATCGACAAGGGCAAC...TGCTGGATCTGATTTTATTCCATGTAGCATCATCTGACTGCTACATATATGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194436.2 |
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| CDS TCA 72 bp | GTTGGCCTCCATGCATCCGATGGCATCTTCCAAGAGTaGAAATTCCACGCAGACATAGCCATAGTCGTAACC | + |
|
Preference number: 6 (lower is better) Translates to: VGLHASDGIFQE*KFHADIAIVVT Trigger: GGTTACGACTATGGCTATGTCTGCGTGGAATTTTCACTCTTGGAAGATGCCATCGGATGCATGGAGGCCAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
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| CDS GCA 72 bp | CTGAATGCCCCTGGAAATCAAAGGGAAGTGAATCTCTaGCAGGAAAGTTGCCAGAGTGTCTCTCTTGAGCAT | + |
|
Preference number: 6 (lower is better) Translates to: LNAPGNQREVNL*QESCQSVSLEH Trigger: ATGCTCAAGAGAGACACTCTGGCAACTTTCCTGGCAGAGATTCACTTCCCTTTGATTTCCAGGGGCATTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183032.8 |
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| CDS GCA 72 bp | GAATGCTCCTCTACATTTGCAAAGGGAGGTCCTGAATaGCCCTGGAAATCAAAGGGAAGTGAATCTCTGCCA | + |
|
Preference number: 6 (lower is better) Translates to: ECSSTFAKGGPE*PWKSKGSESLP Trigger: TGGCAGAGATTCACTTCCCTTTGATTTCCAGGGGCATTCAGGACCTCCCTTTGCAAATGTAGAGGAGCATTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183032.8 |
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| CDS CCA 72 bp | TCCTCTACATTTGCAAAGGGAGGTCCTGAATGCCCCTaGAAATCAAAGGGAAGTGAATCTCTGCCAGGAAAG | + |
|
Preference number: 6 (lower is better) Translates to: SSTFAKGGPECP*KSKGSESLPGK Trigger: CTTTCCTGGCAGAGATTCACTTCCCTTTGATTTCCAGGGGCATTCAGGACCTCCCTTTGCAAATGTAGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183032.8 |
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| CDS CAA 72 bp | GTTAGGTTTCTCCTCGCTTGGGCCAGTCCTATAATCTaGATCCTGAAGGTCTTGTTGGGCATCTCTGGACAT | + |
|
Preference number: 6 (lower is better) Translates to: VRFLLAWASPII*ILKVLLGISGH Trigger: ATGTCCAGAGATGCCCAACAAGACCTTCAGGATCAAGATTATAGGACTGGCCCAAGCGAGGAGAAACCTAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
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| CDS CAA 90 bp | CAGTACCAAAAATCTGGGCTTGGTACATACTCAAGAGTGACCTCTTaGTCATGGATCATTAGAGTTCCCTGGTTGGCCTCCATGCATCCG | + |
|
Preference number: 6 (lower is better) Translates to: QYQKSGLGTYSRVTS*SWIIRVPWLASMHP Trigger: CGGATGCATGGAGGCCAACCAGGGAACTCTAATGATCCATGACAAAGAGGTCACTCTTGAGTATGTACCAAGCCCAGATTTTTGGTACTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
||
| CDS GCA 72 bp | TGTCATGGATCATTAGAGTTCCCTGGTTGGCCTCCATaGATCCGATGGCATCTTCCAAGAGTGAAAATTCCA | + |
|
Preference number: 6 (lower is better) Translates to: CHGSLEFPGWPP*IRWHLPRVKIP Trigger: TGGAATTTTCACTCTTGGAAGATGCCATCGGATGCATGGAGGCCAACCAGGGAACTCTAATGATCCATGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
||
| CDS CAA 72 bp | AAATCTGGGCTTGGTACATACTCAAGAGTGACCTCTTaGTCATGGATCATTAGAGTTCCCTGGTTGGCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: KSGLGTYSRVTS*SWIIRVPWLAS Trigger: GGAGGCCAACCAGGGAACTCTAATGATCCATGACAAAGAGGTCACTCTTGAGTATGTACCAAGCCCAGATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 ENSMUST00000195883.6 |
||
| CDS TCA 72 bp | TTTTCTGAGGTTGAGGATAGGACACTAGTTCCTGCTTaGCTTCTTCCTTTGGGCCCTTGCAGAATGAACAAG | + |
|
Preference number: 6 (lower is better) Translates to: FSEVEDRTLVPA*LLPLGPCRMNK Trigger: CTTGTTCATTCTGCAAGGGCCCAAAGGAAGAAGTCAAGCAGGAACTAGTGTCCTATCCTCAACCTCAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 ENSMUST00000195883.6 |
||
| CDS CAA 72 bp | TTCCATACAAGGTCCTACCTCTCTGCCCCGAAAATCTaGGTAAGTCCTAGTACGATGTCTACCTCTGAAATC | + |
|
Preference number: 6 (lower is better) Translates to: FHTRSYLSAPKI*VSPSTMSTSEI Trigger: GATTTCAGAGGTAGACATCGTACTAGGACTTACCAAGATTTTCGGGGCAGAGAGGTAGGACCTTGTATGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
||
| CDS CAA 90 bp | ATCTTTAAATTCCATACAAGGTCCTACCTCTCTGCCCCGAAAATCTaGGTAAGTCCTAGTACGATGTCTACCTCTGAAATCCGAATGTGG | + |
|
Preference number: 6 (lower is better) Translates to: IFKFHTRSYLSAPKI*VSPSTMSTSEIRMW Trigger: CCACATTCGGATTTCAGAGGTAGACATCGTACTAGGACTTACCAAGATTTTCGGGGCAGAGAGGTAGGACCTTGTATGGAATTTAAAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
||
| CDS TCA 72 bp | GTCCAAATCACCTTCTTCTTTAAACAGACCAGCATCTaGACTCTGTTGTTCACCTCCAGAAAGCTTTGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: VQITFFFKQTSI*TLLFTSRKLWL Trigger: AAGCCAAAGCTTTCTGGAGGTGAACAACAGAGTTCAGATGCTGGTCTGTTTAAAGAAGAAGGTGATTTGGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
||
| CDS TCA 72 bp | AGTACCAAAAATCTGGGCTTGGTACATACTCAAGAGTaGCCTCTTTGTCATGGATCATTAGAGTTCCCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: STKNLGLVHTQE*PLCHGSLEFPG Trigger: ACCAGGGAACTCTAATGATCCATGACAAAGAGGTCACTCTTGAGTATGTACCAAGCCCAGATTTTTGGTACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 ENSMUST00000195883.6 |
||
| CDS CCA 72 bp | AGTGCTAGCCTTACATCGTTTACAGTACCAAAAATCTaGGCTTGGTACATACTCAAGAGTGACCTCTTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: SASLTSFTVPKI*AWYILKSDLFV Trigger: GACAAAGAGGTCACTCTTGAGTATGTACCAAGCCCAGATTTTTGGTACTGTAAACGATGTAAGGCTAGCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 ENSMUST00000195883.6 |
||
| CDS GCA 72 bp | TTCTCCCTTCTGAACACCAAAAGCAGGTCTTTCCATTaGATGGTCATGTATGGATTCTTCTCTCTTGTTCAT | + |
|
Preference number: 6 (lower is better) Translates to: FSLLNTKSRSFH*MVMYGFFSLVH Trigger: ATGAACAAGAGAGAAGAATCCATACATGACCATGCAATGGAAAGACCTGCTTTTGGTGTTCAGAAGGGAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
||
| CDS CCA 72 bp | AGCCTTACATCGTTTACAGTACCAAAAATCTGGGCTTaGTACATACTCAAGAGTGACCTCTTTGTCATGGAT | + |
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Preference number: 6 (lower is better) Translates to: SLTSFTVPKIWA*YILKSDLFVMD Trigger: ATCCATGACAAAGAGGTCACTCTTGAGTATGTACCAAGCCCAGATTTTTGGTACTGTAAACGATGTAAGGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 ENSMUST00000195883.6 |
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| CDS CAA 72 bp | ACTCTGTTGTTCACCTCCAGAAAGCTTTGGCTTATCTaGTTCTTGAACTGGACTTTGGCTGTTTTGAAAGTC | + |
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Preference number: 6 (lower is better) Translates to: TLLFTSRKLWLI*FLNWTLAVLKV Trigger: GACTTTCAAAACAGCCAAAGTCCAGTTCAAGAACAAGATAAGCCAAAGCTTTCTGGAGGTGAACAACAGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
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| CDS CAA 90 bp | GTGATCCACATCACAGTATTCAATGCTTCTGTAATCAGTGTCTTGTaGGCCAAGAAAGTCCAAATCACCTTCTTCTTTAAACAGACCAGC | + |
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Preference number: 6 (lower is better) Translates to: VIHITVFNASVISVL*AKKVQITFFFKQTS Trigger: GCTGGTCTGTTTAAAGAAGAAGGTGATTTGGACTTTCTTGGCCAACAAGACACTGATTACAGAAGCATTGAATACTGTGATGTGGATCAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
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| CDS CCA 72 bp | CTCTTGTGGAGAAGGCTGAATGTAATCCAAAACTTTTaGATCCATAGGAGGCATCTCCCTATCTTTAAATTC | + |
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Preference number: 6 (lower is better) Translates to: LLWRRLNVIQNF*IHRRHLPIFKF Trigger: GAATTTAAAGATAGGGAGATGCCTCCTATGGATCCAAAAGTTTTGGATTACATTCAGCCTTCTCCACAAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035201.13 ENSMUST00000183032.8 |
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