Pregenerated sensors for RBM45 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042369Ensembl transcript IDs: ENSMUST00000046389.5
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | AGACAAAAATACATGTCAGCGATCCCAGATAAGCAATaGTGTGAAGACTATCGGATATGTAAGAAAATAGAA | + |
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Preference number: 3 (lower is better) Translates to: RQKYMSAIPDKQ*CEDYRICKKIE Trigger: TTCTATTTTCTTACATATCCGATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR TCA 90 bp | CTGTCCACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGGATTATGTGCCCGGCAGGCCTGTaGGCTGCGCGCGAACTTGAC | + |
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Preference number: 4 (lower is better) Translates to: LSTGVRPVRFSVSQLRIMCPAGL*AARELD Trigger: GTCAAGTTCGCGCGCAGCTCACAGGCCTGCCGGGCA...CATAATCCTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGTGGACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CCA 90 bp | CTGTCAACTGTCCACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGCCACCGACAGGCGTTTaGAGACAGCTTCTTGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LSTVHRGSSSQVFSQSAEPPTGV*RQLLGL Trigger: GAGGCCAAGAAGCTGTCTCCAAACGCCTGTCGGTGG...CTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGTGGACAGTTGACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR GCA 90 bp | CTGTCAACTGTCCACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGTTGGACTCCTTAGTGTaGTTGTCGCGCACCACCCAG | + |
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Preference number: 4 (lower is better) Translates to: LSTVHRGSSSQVFSQSAELDSLV*LSRTTQ Trigger: CTGGGTGGTGCGCGACAAGCACACTAAGGAGTCCAA...CTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGTGGACAGTTGACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR TCA 90 bp | CTGTCCACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGGATTATGACATCTGTCTGGATTTaGGGCGCCTGTGAGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LSTGVRPVRFSVSQLRIMTSVWI*GACEAA Trigger: TGCTGCCTCACAGGCGCCTCAAATCCAGACAGATGT...CATAATCCTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGTGGACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR TCA 90 bp | CTGTCAACTGTCCACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGCGGATGTGTGCTTGCTaGTCACTAGAAAAATGCGGC | + |
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Preference number: 4 (lower is better) Translates to: LSTVHRGSSSQVFSQSAERMCAC*SLEKCG Trigger: GCCGCATTTTTCTAGTGATCAGCAAGCACACATCCG...CTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGTGGACAGTTGACAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CCA 90 bp | CTGTCAACTGTCCACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGCCTGATGATCGGGACTaGGCAATGAAAACCTTGATG | + |
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Preference number: 4 (lower is better) Translates to: LSTVHRGSSSQVFSQSAEPDDRD*AMKTLM Trigger: CATCAAGGTTTTCATTGCCCAGTCCCGATCATCAGG...CTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGTGGACAGTTGACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR GCA 90 bp | GTCAGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTGTGAAGACTATCCCAGGCACTGTCCGTaGATCTCCTCCATTGCCCGG | + |
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Preference number: 4 (lower is better) Translates to: VRQKYMSAIPDKQWCEDYPRHCP*ISSIAR Trigger: CCGGGCAATGGAGGAGATGCACGGACAGTGCCTGGG...ATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCTGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR TCA 90 bp | CTGTCCACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGGATTATGACCATGACCGTAATTTaGATAAGGATCTCGCGGAAC | + |
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Preference number: 4 (lower is better) Translates to: LSTGVRPVRFSVSQLRIMTMTVI*IRISRN Trigger: GTTCCGCGAGATCCTTATTCAAATTACGGTCATGGT...CATAATCCTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGTGGACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CCA 90 bp | TTTCCATTAAGGTCAGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTTGGGCTTGGTGTCGCTaGGACCCAGGCACTGTCCGT | + |
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Preference number: 4 (lower is better) Translates to: FPLRSDKNTCQRSQISNGWAWCR*DPGTVR Trigger: ACGGACAGTGCCTGGGTCCCAGCGACACCAAGCCCA...ACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCTGACCTTAATGGAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CCA 90 bp | ACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGGATTATGTCACTACAGCCTTTCTTTCACTaGAGTTTCAGGCGGCGCTTT | + |
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Preference number: 4 (lower is better) Translates to: TGVRPVRFSVSQLRIMSLQPFFH*SFRRRF Trigger: AAAGCGCCGCCTGAAACTCCAGTGAAAGAAAGGCTG...TAGTGACATAATCCTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR GCA 90 bp | ACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGGATTATGTCACTAAAAATGCTGAAGAGCTaGTCTTCCGTGAAGGGGACT | + |
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Preference number: 4 (lower is better) Translates to: TGVRPVRFSVSQLRIMSLKMLKS*SSVKGT Trigger: AGTCCCCTTCACGGAAGAGCAGCTCTTCAGCATTTT...TAGTGACATAATCCTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR GCA 90 bp | CTGTCCACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGGATTATGTTCTCTTGGGGAATCTaGCAGCATAACCTTAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: LSTGVRPVRFSVSQLRIMFSWGI*QHNLKS Trigger: AGACTTAAGGTTATGCTGGCAGATTCCCCAAGAGAA...CATAATCCTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGTGGACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CCA 90 bp | GTCAGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTGTGAAGACTATGAAAAATGCGGCTGTTaGGCGGCTCATCCAGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: VRQKYMSAIPDKQWCEDYEKCGC*AAHPGC Trigger: ACAGCCTGGATGAGCCGCCCAACAGCCGCATTTTTC...ATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCTGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR TCA 90 bp | AGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTGTGAAGACTATCGGTCTTCAACATCCCTGTaGCTTCCTGATGATCGGGAC | + |
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Preference number: 4 (lower is better) Translates to: RQKYMSAIPDKQWCEDYRSSTSL*LPDDRD Trigger: GTCCCGATCATCAGGAAGTCACAGGGATGTTGAAGA...CCGATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR TCA 90 bp | GTCAGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTGTGAAGACTATGATTTGAGGCGCCTGTaGGGCAGCATTTCCTCCATA | + |
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Preference number: 4 (lower is better) Translates to: VRQKYMSAIPDKQWCEDYDLRRL*GSISSI Trigger: TATGGAGGAAATGCTGCCTCACAGGCGCCTCAAATC...ATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCTGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CCA 90 bp | AGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTGTGAAGACTATCGGGAAACAGATTTGCTCTaGGTTCCTGTCCCAAAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: RQKYMSAIPDKQWCEDYRETDLL*VPVPKP Trigger: AGGCTTTGGGACAGGAACCCAGAGCAAATCTGTTTC...CCGATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CCA 90 bp | GACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTGTGAAGACTATCGGATTGGAGACAGCTTCTTaGCCTCTGCTATCGTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: DKNTCQRSQISNGVKTIGLETAS*PLLSFL Trigger: CAAGAACGATAGCAGAGGCCAAGAAGCTGTCTCCAA...TCCGATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR GCA 90 bp | GTCAGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTGTGAAGACTATGCGGCGCTTTCTTTTTaGACGACGGAAGTACAACAT | + |
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Preference number: 4 (lower is better) Translates to: VRQKYMSAIPDKQWCEDYAALSF*TTEVQH Trigger: ATGTTGTACTTCCGTCGTGCAAAAAGAAAGCGCCGC...ATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCTGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CCA 90 bp | GACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTGTGAAGACTATCGGATCTAGTGGCAAAGGATaGGGATTAAACACAACAAAC | + |
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Preference number: 4 (lower is better) Translates to: DKNTCQRSQISNGVKTIGSSGKG*GLNTTN Trigger: GTTTGTTGTGTTTAATCCCCATCCTTTGCCACTAGA...TCCGATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR TCA 90 bp | TTTCCATTAAGGTCAGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTCAGCCAAGAGTGCTCTaGAACTTCTATCACAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: FPLRSDKNTCQRSQISNGQPRVL*NFYHSF Trigger: AAAACTGTGATAGAAGTTTCAGAGCACTCTTGGCTG...ACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCTGACCTTAATGGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR GCA 90 bp | TTTCCATTAAGGTCAGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTAGGTTCAGCCAAGAGTaGTCTGAAACTTCTATCACA | + |
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Preference number: 4 (lower is better) Translates to: FPLRSDKNTCQRSQISNGRFSQE*SETSIT Trigger: TGTGATAGAAGTTTCAGAGCACTCTTGGCTGAACCT...ACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCTGACCTTAATGGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR GCA 90 bp | CTGCCATACATGACAACATATTTCTCTAAGGAAGCTTTATTTCTGCTATACACACAGCTTCTTGGCCTCTaGTATCGTTCTTGTCAAAAG | + |
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Preference number: 4 (lower is better) Translates to: LPYMTTYFSKEALFLLYTQLLGL*YRSCQK Trigger: CTTTTGACAAGAACGATAGCAGAGGCCAAGAAGCTG...TGTGTATAGCAGAAATAAAGCTTCCTTAGAGAAATATGTTGTCATGTATGGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR GCA 90 bp | CTGCCATACATGACAACATATTTCTCTAAGGAAGCTTTATTTCTGCTATACACAGTTGAAAATTCAGATTaGTGTTCTCCAACAAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: LPYMTTYFSKEALFLLYTVENSD*CSPTKG Trigger: TCCCTTTGTTGGAGAACAGCAATCTGAATTTTCAAC...TGTGTATAGCAGAAATAAAGCTTCCTTAGAGAAATATGTTGTCATGTATGGCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS TCA 90 bp | ACCCAGGCACTGTCCGTGCATCTCCTCCATTGCCCGGCAGGCCTGTaGGCTGCGCGCGAACTTGACGAAGGCCACGCCCTTGGACTCCTT | + |
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Preference number: 5 (lower is better) Translates to: TQALSVHLLHCPAGL*AARELDEGHALGLL Trigger: AAGGAGTCCAAGGGCGTGGCCTTCGTCAAGTTCGCGCGCAGCTCACAGGCCTGCCGGGCAATGGAGGAGATGCACGGACAGTGCCTGGGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 90 bp | AAAACCTTGATGGGCTTGGTGTCGCTGGGACCCAGGCACTGTCCGTaGATCTCCTCCATTGCCCGGCAGGCCTGTGAGCTGCGCGCGAAC | + |
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Preference number: 5 (lower is better) Translates to: KTLMGLVSLGPRHCP*ISSIARQACELRAN Trigger: GTTCGCGCGCAGCTCACAGGCCTGCCGGGCAATGGAGGAGATGCACGGACAGTGCCTGGGTCCCAGCGACACCAAGCCCATCAAGGTTTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 90 bp | CTGCGCGCGAACTTGACGAAGGCCACGCCCTTGGACTCCTTAGTGTaGTTGTCGCGCACCACCCAGATGTCCTGGATGTCTCCGAAGGGC | + |
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Preference number: 5 (lower is better) Translates to: LRANLTKATPLDSLV*LSRTTQMSWMSPKG Trigger: GCCCTTCGGAGACATCCAGGACATCTGGGTGGTGCGCGACAAGCACACTAAGGAGTCCAAGGGCGTGGCCTTCGTCAAGTTCGCGCGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CCA 90 bp | CCCTTGGACTCCTTAGTGTGCTTGTCGCGCACCACCCAGATGTCCTaGATGTCTCCGAAGGGCGAGAAGCGCTCCCTCAGCACCAATTCG | + |
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Preference number: 5 (lower is better) Translates to: PLDSLVCLSRTTQMS*MSPKGEKRSLSTNS Trigger: CGAATTGGTGCTGAGGGAGCGCTTCTCGCCCTTCGGAGACATCCAGGACATCTGGGTGGTGCGCGACAAGCACACTAAGGAGTCCAAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS TCA 90 bp | AGGGCGAGAAGCGCTCCCTCAGCACCAATTCGGATGTGTGCTTGCTaGTCACTAGAAAAATGCGGCTGTTGGGCGGCTCATCCAGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: RARSAPSAPIRMCAC*SLEKCGCWAAHPGC Trigger: ACAGCCTGGATGAGCCGCCCAACAGCCGCATTTTTCTAGTGATCAGCAAGCACACATCCGAATTGGTGCTGAGGGAGCGCTTCTCGCCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 90 bp | TCTCCGAAGGGCGAGAAGCGCTCCCTCAGCACCAATTCGGATGTGTaGTTGCTGATCACTAGAAAAATGCGGCTGTTGGGCGGCTCATCC | + |
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Preference number: 5 (lower is better) Translates to: SPKGEKRSLSTNSDV*LLITRKMRLLGGSS Trigger: GGATGAGCCGCCCAACAGCCGCATTTTTCTAGTGATCAGCAAGCACACATCCGAATTGGTGCTGAGGGAGCGCTTCTCGCCCTTCGGAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 90 bp | TCACAATACTCCAGGCCTGGGACGATGTCAAAAATGCTGAAGAGCTaGTCTTCCGTGAAGGGGACTCTCGACACCACCGACAGGCGTTTG | + |
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Preference number: 5 (lower is better) Translates to: SQYSRPGTMSKMLKS*SSVKGTLDTTDRRL Trigger: CAAACGCCTGTCGGTGGTGTCGAGAGTCCCCTTCACGGAAGAGCAGCTCTTCAGCATTTTTGACATCGTCCCAGGCCTGGAGTATTGTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CCA 90 bp | CTGTCCCAAAGCCTCCTGCCTCCCGCTGCTGTAATCATCTTGTTCTaGGGACCCCGACACTTTATTTTTAGGTTCAGCCAAGAGTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: LSQSLLPPAAVIILF*GPRHFIFRFSQECS Trigger: AGAGCACTCTTGGCTGAACCTAAAAATAAAGTGTCGGGGTCCCCAGAACAAGATGATTACAGCAGCGGGAGGCAGGAGGCTTTGGGACAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CAA 90 bp | CTGTCCACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGGATTATGGGCGGCGCTTTCTTTTaGCACGACGGAAGTACAACA | + |
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Preference number: 5 (lower is better) Translates to: LSTGVRPVRFSVSQLRIMGGAFF*HDGSTT Trigger: TGTTGTACTTCCGTCGTGCAAAAAGAAAGCGCCGCC...CATAATCCTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGTGGACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS TCA 90 bp | TTTGCACGACGGAAGTACAACATCTGTCTGGATTTGAGGCGCCTGTaGGGCAGCATTTCCTCCATATTGCAGAAACTGCTGCTGACTCGT | + |
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Preference number: 5 (lower is better) Translates to: FARRKYNICLDLRRL*GSISSILQKLLLTR Trigger: ACGAGTCAGCAGCAGTTTCTGCAATATGGAGGAAATGCTGCCTCACAGGCGCCTCAAATCCAGACAGATGTTGTACTTCCGTCGTGCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS TCA 90 bp | GGCGCTTTCTTTTTGCACGACGGAAGTACAACATCTGTCTGGATTTaGGGCGCCTGTGAGGCAGCATTTCCTCCATATTGCAGAAACTGC | + |
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Preference number: 5 (lower is better) Translates to: GAFFLHDGSTTSVWI*GACEAAFPPYCRNC Trigger: GCAGTTTCTGCAATATGGAGGAAATGCTGCCTCACAGGCGCCTCAAATCCAGACAGATGTTGTACTTCCGTCGTGCAAAAAGAAAGCGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 90 bp | CAAACAGCCTTTCTTTCACTGGAGTTTCAGGCGGCGCTTTCTTTTTaGACGACGGAAGTACAACATCTGTCTGGATTTGAGGCGCCTGTG | + |
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Preference number: 5 (lower is better) Translates to: QTAFLSLEFQAALSF*TTEVQHLSGFEAPV Trigger: CACAGGCGCCTCAAATCCAGACAGATGTTGTACTTCCGTCGTGCAAAAAGAAAGCGCCGCCTGAAACTCCAGTGAAAGAAAGGCTGTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 90 bp | TCTGCCAGCATAACCTTAAGTCTGACCCCATTCAGAATCTTCCCGTaGAGAGTTGTGATGGCCTCATTGGCGCTCTTTCTATCGGCATAC | + |
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Preference number: 5 (lower is better) Translates to: SASITLSLTPFRIFP*RVVMASLALFLSAY Trigger: GTATGCCGATAGAAAGAGCGCCAATGAGGCCATCACAACTCTGCACGGGAAGATTCTGAATGGGGTCAGACTTAAGGTTATGCTGGCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CAA 90 bp | ACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGGATTATGTCACTATGGGCAATGAAAACCTaGATGGGCTTGGTGTCGCTG | + |
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Preference number: 5 (lower is better) Translates to: TGVRPVRFSVSQLRIMSLWAMKT*MGLVSL Trigger: CAGCGACACCAAGCCCATCAAGGTTTTCATTGCCCA...TAGTGACATAATCCTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CAA 90 bp | CTGTCAACTGTCCACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGCACCATGACCGTAATTaGAATAAGGATCTCGCGGAA | + |
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Preference number: 5 (lower is better) Translates to: LSTVHRGSSSQVFSQSAEHHDRN*NKDLAE Trigger: TTCCGCGAGATCCTTATTCAAATTACGGTCATGGTG...CTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGTGGACAGTTGACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CAA 90 bp | AGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTGTGAAGACTATCGGGACTCCTTAGTGTGCTaGTCGCGCACCACCCAGATG | + |
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Preference number: 5 (lower is better) Translates to: RQKYMSAIPDKQWCEDYRDSLVC*SRTTQM Trigger: CATCTGGGTGGTGCGCGACAAGCACACTAAGGAGTC...CCGATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CAA 90 bp | AGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTGTGAAGACTATCGGACCACCGACAGGCGTTaGGAGACAGCTTCTTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: RQKYMSAIPDKQWCEDYRTTDRR*ETASWP Trigger: AGGCCAAGAAGCTGTCTCCAAACGCCTGTCGGTGGT...CCGATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 90 bp | CTCTCGACACCACCGACAGGCGTTTGGAGACAGCTTCTTGGCCTCTaGTATCGTTCTTGTCAAAAGTTGAAAATTCAGATTGCTGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: LSTPPTGVWRQLLGL*YRSCQKLKIQIAVL Trigger: GAGAACAGCAATCTGAATTTTCAACTTTTGACAAGAACGATAGCAGAGGCCAAGAAGCTGTCTCCAAACGCCTGTCGGTGGTGTCGAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CAA 90 bp | CTGCCATACATGACAACATATTTCTCTAAGGAAGCTTTATTTCTGCTATACACAGAGCTGCGCGCGAACTaGACGAAGGCCACGCCCTTG | + |
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Preference number: 5 (lower is better) Translates to: LPYMTTYFSKEALFLLYTELRAN*TKATPL Trigger: CAAGGGCGTGGCCTTCGTCAAGTTCGCGCGCAGCTC...TGTGTATAGCAGAAATAAAGCTTCCTTAGAGAAATATGTTGTCATGTATGGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CAA 90 bp | CTGCCATACATGACAACATATTTCTCTAAGGAAGCTTTATTTCTGCTATACACACGTGCATCTCCTCCATaGCCCGGCAGGCCTGTGAGC | + |
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Preference number: 5 (lower is better) Translates to: LPYMTTYFSKEALFLLYTRASPP*PGRPVS Trigger: GCTCACAGGCCTGCCGGGCAATGGAGGAGATGCACG...TGTGTATAGCAGAAATAAAGCTTCCTTAGAGAAATATGTTGTCATGTATGGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CAA 90 bp | ACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGGATTATGTCACTATTTGGAGACAGCTTCTaGGCCTCTGCTATCGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: TGVRPVRFSVSQLRIMSLFGDSF*ASAIVL Trigger: AAGAACGATAGCAGAGGCCAAGAAGCTGTCTCCAAA...TAGTGACATAATCCTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CCA 90 bp | TGGCAAAGGATGGGGATTAAACACAACAAACAGCCTTTCTTTCACTaGAGTTTCAGGCGGCGCTTTCTTTTTGCACGACGGAAGTACAAC | + |
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Preference number: 5 (lower is better) Translates to: WQRMGIKHNKQPFFH*SFRRRFLFARRKYN Trigger: GTTGTACTTCCGTCGTGCAAAAAGAAAGCGCCGCCTGAAACTCCAGTGAAAGAAAGGCTGTTTGTTGTGTTTAATCCCCATCCTTTGCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CAA 90 bp | ACAGGGGTTCGTCCAGTCAGGTTTTCAGTCAGTCAGCTGAGGATTATGTCACTAGTTCTCTGCCTCTTTTaGGATTCTTCTCTTGGGGAA | + |
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Preference number: 5 (lower is better) Translates to: TGVRPVRFSVSQLRIMSLVLCLF*DSSLGE Trigger: TTCCCCAAGAGAAGAATCCAAAAAGAGGCAGAGAAC...TAGTGACATAATCCTCAGCTGACTGACTGAAAACCTGACTGGACGAACCCCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS TCA 90 bp | ATCATAACAAAGATTCTCGTGAGTTCTTCATCTTCAACATCCCTGTaGCTTCCTGATGATCGGGACTGGGCAATGAAAACCTTGATGGGC | + |
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Preference number: 5 (lower is better) Translates to: IITKILVSSSSSTSL*LPDDRDWAMKTLMG Trigger: GCCCATCAAGGTTTTCATTGCCCAGTCCCGATCATCAGGAAGTCACAGGGATGTTGAAGATGAAGAACTCACGAGAATCTTTGTTATGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CAA 90 bp | TTTCCATTAAGGTCAGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTCAAAGGGAAACAGATTaGCTCTGGGTTCCTGTCCCA | + |
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Preference number: 5 (lower is better) Translates to: FPLRSDKNTCQRSQISNGQRETD*LWVPVP Trigger: TGGGACAGGAACCCAGAGCAAATCTGTTTCCCTTTG...ACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCTGACCTTAATGGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 90 bp | TCTTGGCCTCTGCTATCGTTCTTGTCAAAAGTTGAAAATTCAGATTaGTGTTCTCCAACAAAGGGAAACAGATTTGCTCTGGGTTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: SWPLLSFLSKVENSD*CSPTKGNRFALGSC Trigger: ACAGGAACCCAGAGCAAATCTGTTTCCCTTTGTTGGAGAACAGCAATCTGAATTTTCAACTTTTGACAAGAACGATAGCAGAGGCCAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CAA 90 bp | GTCAGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTGTGAAGACTATAGCATTTCCTCCATATaGCAGAAACTGCTGCTGACT | + |
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Preference number: 5 (lower is better) Translates to: VRQKYMSAIPDKQWCEDYSISSI*QKLLLT Trigger: AGTCAGCAGCAGTTTCTGCAATATGGAGGAAATGCT...ATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCTGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS TCA 90 bp | TTTGGAGACAGCTTCTTGGCCTCTGCTATCGTTCTTGTCAAAAGTTaGAAATTCAGATTGCTGTTCTCCAACAAAGGGAAACAGATTTGC | + |
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Preference number: 5 (lower is better) Translates to: FGDSFLASAIVLVKS*KFRLLFSNKGKQIC Trigger: GCAAATCTGTTTCCCTTTGTTGGAGAACAGCAATCTGAATTTTCAACTTTTGACAAGAACGATAGCAGAGGCCAAGAAGCTGTCTCCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CCA 90 bp | ATACACCTTGAACTTCTCCCGCAGGTCTTCTTCTGTATAGGACTTTaGTATCATAACAAAGATTCTCGTGAGTTCTTCATCTTCAACATC | + |
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Preference number: 5 (lower is better) Translates to: IHLELLPQVFFCIGL*YHNKDSREFFIFNI Trigger: GATGTTGAAGATGAAGAACTCACGAGAATCTTTGTTATGATACCAAAGTCCTATACAGAAGAAGACCTGCGGGAGAAGTTCAAGGTGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS-3UTR CAA 90 bp | GTCAGACAAAAATACATGTCAGCGATCCCAGATAAGCAATGGTGTGAAGACTATAATTCGGATGTGTGCTaGCTGATCACTAGAAAAATG | + |
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Preference number: 5 (lower is better) Translates to: VRQKYMSAIPDKQWCEDYNSDVC*LITRKM Trigger: CATTTTTCTAGTGATCAGCAAGCACACATCCGAATT...ATAGTCTTCACACCATTGCTTATCTGGGATCGCTGACATGTATTTTTGTCTGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS TCA 72 bp | CTGTCCGTGCATCTCCTCCATTGCCCGGCAGGCCTGTaGGCTGCGCGCGAACTTGACGAAGGCCACGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: LSVHLLHCPAGL*AARELDEGHAL Trigger: AAGGGCGTGGCCTTCGTCAAGTTCGCGCGCAGCTCACAGGCCTGCCGGGCAATGGAGGAGATGCACGGACAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 72 bp | ATGGGCTTGGTGTCGCTGGGACCCAGGCACTGTCCGTaGATCTCCTCCATTGCCCGGCAGGCCTGTGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: MGLVSLGPRHCP*ISSIARQACEL Trigger: CAGCTCACAGGCCTGCCGGGCAATGGAGGAGATGCACGGACAGTGCCTGGGTCCCAGCGACACCAAGCCCAT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CAA 90 bp | CGGCAGGCCTGTGAGCTGCGCGCGAACTTGACGAAGGCCACGCCCTaGGACTCCTTAGTGTGCTTGTCGCGCACCACCCAGATGTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: RQACELRANLTKATP*DSLVCLSRTTQMSW Trigger: CCAGGACATCTGGGTGGTGCGCGACAAGCACACTAAGGAGTCCAAGGGCGTGGCCTTCGTCAAGTTCGCGCGCAGCTCACAGGCCTGCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CAA 72 bp | TCCATTGCCCGGCAGGCCTGTGAGCTGCGCGCGAACTaGACGAAGGCCACGCCCTTGGACTCCTTAGTGTGC | + |
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Preference number: 6 (lower is better) Translates to: SIARQACELRAN*TKATPLDSLVC Trigger: GCACACTAAGGAGTCCAAGGGCGTGGCCTTCGTCAAGTTCGCGCGCAGCTCACAGGCCTGCCGGGCAATGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CAA 90 bp | TGCATCTCCTCCATTGCCCGGCAGGCCTGTGAGCTGCGCGCGAACTaGACGAAGGCCACGCCCTTGGACTCCTTAGTGTGCTTGTCGCGC | + |
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Preference number: 6 (lower is better) Translates to: CISSIARQACELRAN*TKATPLDSLVCLSR Trigger: GCGCGACAAGCACACTAAGGAGTCCAAGGGCGTGGCCTTCGTCAAGTTCGCGCGCAGCTCACAGGCCTGCCGGGCAATGGAGGAGATGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CAA 90 bp | CGCGCGAACTTGACGAAGGCCACGCCCTTGGACTCCTTAGTGTGCTaGTCGCGCACCACCCAGATGTCCTGGATGTCTCCGAAGGGCGAG | + |
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Preference number: 6 (lower is better) Translates to: RANLTKATPLDSLVC*SRTTQMSWMSPKGE Trigger: CTCGCCCTTCGGAGACATCCAGGACATCTGGGTGGTGCGCGACAAGCACACTAAGGAGTCCAAGGGCGTGGCCTTCGTCAAGTTCGCGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CAA 72 bp | TGTGAGCTGCGCGCGAACTTGACGAAGGCCACGCCCTaGGACTCCTTAGTGTGCTTGTCGCGCACCACCCAG | + |
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Preference number: 6 (lower is better) Translates to: CELRANLTKATP*DSLVCLSRTTQ Trigger: CTGGGTGGTGCGCGACAAGCACACTAAGGAGTCCAAGGGCGTGGCCTTCGTCAAGTTCGCGCGCAGCTCACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CCA 72 bp | TCCTTAGTGTGCTTGTCGCGCACCACCCAGATGTCCTaGATGTCTCCGAAGGGCGAGAAGCGCTCCCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: SLVCLSRTTQMS*MSPKGEKRSLS Trigger: GCTGAGGGAGCGCTTCTCGCCCTTCGGAGACATCCAGGACATCTGGGTGGTGCGCGACAAGCACACTAAGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CAA 72 bp | TTGACGAAGGCCACGCCCTTGGACTCCTTAGTGTGCTaGTCGCGCACCACCCAGATGTCCTGGATGTCTCCG | + |
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Preference number: 6 (lower is better) Translates to: LTKATPLDSLVC*SRTTQMSWMSP Trigger: CGGAGACATCCAGGACATCTGGGTGGTGCGCGACAAGCACACTAAGGAGTCCAAGGGCGTGGCCTTCGTCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CAA 90 bp | ACCAATTCGGATGTGTGCTTGCTGATCACTAGAAAAATGCGGCTGTaGGGCGGCTCATCCAGGCTGTCTACGCCCGGGCGGAATCCTCCG | + |
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Preference number: 6 (lower is better) Translates to: TNSDVCLLITRKMRL*GGSSRLSTPGRNPP Trigger: CGGAGGATTCCGCCCGGGCGTAGACAGCCTGGATGAGCCGCCCAACAGCCGCATTTTTCTAGTGATCAGCAAGCACACATCCGAATTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CAA 90 bp | CCGAAGGGCGAGAAGCGCTCCCTCAGCACCAATTCGGATGTGTGCTaGCTGATCACTAGAAAAATGCGGCTGTTGGGCGGCTCATCCAGG | + |
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Preference number: 6 (lower is better) Translates to: PKGEKRSLSTNSDVC*LITRKMRLLGGSSR Trigger: CCTGGATGAGCCGCCCAACAGCCGCATTTTTCTAGTGATCAGCAAGCACACATCCGAATTGGTGCTGAGGGAGCGCTTCTCGCCCTTCGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 72 bp | AACTTGACGAAGGCCACGCCCTTGGACTCCTTAGTGTaGTTGTCGCGCACCACCCAGATGTCCTGGATGTCT | + |
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Preference number: 6 (lower is better) Translates to: NLTKATPLDSLV*LSRTTQMSWMS Trigger: AGACATCCAGGACATCTGGGTGGTGCGCGACAAGCACACTAAGGAGTCCAAGGGCGTGGCCTTCGTCAAGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 72 bp | TCCAGGCCTGGGACGATGTCAAAAATGCTGAAGAGCTaGTCTTCCGTGAAGGGGACTCTCGACACCACCGAC | + |
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Preference number: 6 (lower is better) Translates to: SRPGTMSKMLKS*SSVKGTLDTTD Trigger: GTCGGTGGTGTCGAGAGTCCCCTTCACGGAAGAGCAGCTCTTCAGCATTTTTGACATCGTCCCAGGCCTGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CAA 72 bp | TCCGTGAAGGGGACTCTCGACACCACCGACAGGCGTTaGGAGACAGCTTCTTGGCCTCTGCTATCGTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: SVKGTLDTTDRR*ETASWPLLSFL Trigger: CAAGAACGATAGCAGAGGCCAAGAAGCTGTCTCCAAACGCCTGTCGGTGGTGTCGAGAGTCCCCTTCACGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 72 bp | GGCGAGAAGCGCTCCCTCAGCACCAATTCGGATGTGTaGTTGCTGATCACTAGAAAAATGCGGCTGTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: GEKRSLSTNSDV*LLITRKMRLLG Trigger: GCCCAACAGCCGCATTTTTCTAGTGATCAGCAAGCACACATCCGAATTGGTGCTGAGGGAGCGCTTCTCGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CAA 72 bp | GAGAAGCGCTCCCTCAGCACCAATTCGGATGTGTGCTaGCTGATCACTAGAAAAATGCGGCTGTTGGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: EKRSLSTNSDVC*LITRKMRLLGG Trigger: GCCGCCCAACAGCCGCATTTTTCTAGTGATCAGCAAGCACACATCCGAATTGGTGCTGAGGGAGCGCTTCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS TCA 72 bp | AGCGCTCCCTCAGCACCAATTCGGATGTGTGCTTGCTaGTCACTAGAAAAATGCGGCTGTTGGGCGGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: SAPSAPIRMCAC*SLEKCGCWAAH Trigger: ATGAGCCGCCCAACAGCCGCATTTTTCTAGTGATCAGCAAGCACACATCCGAATTGGTGCTGAGGGAGCGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 72 bp | TTCAGATTGCTGTTCTCCAACAAAGGGAAACAGATTTaGTCTGGGTTCCTGTCCCAAAGCCTCCTGCCTCCC | + |
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Preference number: 6 (lower is better) Translates to: FRLLFSNKGKQI*SGFLSQSLLPP Trigger: GGGAGGCAGGAGGCTTTGGGACAGGAACCCAGAGCAAATCTGTTTCCCTTTGTTGGAGAACAGCAATCTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CCA 72 bp | AGCCTCCTGCCTCCCGCTGCTGTAATCATCTTGTTCTaGGGACCCCGACACTTTATTTTTAGGTTCAGCCAA | + |
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Preference number: 6 (lower is better) Translates to: SLLPPAAVIILF*GPRHFIFRFSQ Trigger: TTGGCTGAACCTAAAAATAAAGTGTCGGGGTCCCCAGAACAAGATGATTACAGCAGCGGGAGGCAGGAGGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS TCA 72 bp | CGGAAGTACAACATCTGTCTGGATTTGAGGCGCCTGTaGGGCAGCATTTCCTCCATATTGCAGAAACTGCTG | + |
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Preference number: 6 (lower is better) Translates to: RKYNICLDLRRL*GSISSILQKLL Trigger: CAGCAGTTTCTGCAATATGGAGGAAATGCTGCCTCACAGGCGCCTCAAATCCAGACAGATGTTGTACTTCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CCA 72 bp | ATAAGGATCTCGCGGAACCTCACAATACTCCAGGCCTaGGACGATGTCAAAAATGCTGAAGAGCTGCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: IRISRNLTILQA*DDVKNAEELLF Trigger: GAAGAGCAGCTCTTCAGCATTTTTGACATCGTCCCAGGCCTGGAGTATTGTGAGGTTCCGCGAGATCCTTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CAA 72 bp | ATTCAGATTGCTGTTCTCCAACAAAGGGAAACAGATTaGCTCTGGGTTCCTGTCCCAAAGCCTCCTGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: IQIAVLQQRETD*LWVPVPKPPAS Trigger: GGAGGCAGGAGGCTTTGGGACAGGAACCCAGAGCAAATCTGTTTCCCTTTGTTGGAGAACAGCAATCTGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS TCA 72 bp | TTTTTGCACGACGGAAGTACAACATCTGTCTGGATTTaGGGCGCCTGTGAGGCAGCATTTCCTCCATATTGC | + |
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Preference number: 6 (lower is better) Translates to: FLHDGSTTSVWI*GACEAAFPPYC Trigger: GCAATATGGAGGAAATGCTGCCTCACAGGCGCCTCAAATCCAGACAGATGTTGTACTTCCGTCGTGCAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CCA 72 bp | CTCGACACCACCGACAGGCGTTTGGAGACAGCTTCTTaGCCTCTGCTATCGTTCTTGTCAAAAGTTGAAAAT | + |
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Preference number: 6 (lower is better) Translates to: LDTTDRRLETAS*PLLSFLSKVEN Trigger: ATTTTCAACTTTTGACAAGAACGATAGCAGAGGCCAAGAAGCTGTCTCCAAACGCCTGTCGGTGGTGTCGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 72 bp | ATAACCTTAAGTCTGACCCCATTCAGAATCTTCCCGTaGAGAGTTGTGATGGCCTCATTGGCGCTCTTTCTA | + |
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Preference number: 6 (lower is better) Translates to: ITLSLTPFRIFP*RVVMASLALFL Trigger: TAGAAAGAGCGCCAATGAGGCCATCACAACTCTGCACGGGAAGATTCTGAATGGGGTCAGACTTAAGGTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CAA 90 bp | ACCGACAGGCGTTTGGAGACAGCTTCTTGGCCTCTGCTATCGTTCTaGTCAAAAGTTGAAAATTCAGATTGCTGTTCTCCAACAAAGGGA | + |
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Preference number: 6 (lower is better) Translates to: TDRRLETASWPLLSF*SKVENSDCCSPTKG Trigger: TCCCTTTGTTGGAGAACAGCAATCTGAATTTTCAACTTTTGACAAGAACGATAGCAGAGGCCAAGAAGCTGTCTCCAAACGCCTGTCGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS TCA 72 bp | AAGATTCTCGTGAGTTCTTCATCTTCAACATCCCTGTaGCTTCCTGATGATCGGGACTGGGCAATGAAAACC | + |
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Preference number: 6 (lower is better) Translates to: KILVSSSSSTSL*LPDDRDWAMKT Trigger: GGTTTTCATTGCCCAGTCCCGATCATCAGGAAGTCACAGGGATGTTGAAGATGAAGAACTCACGAGAATCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS GCA 72 bp | TTTCTTTCACTGGAGTTTCAGGCGGCGCTTTCTTTTTaGACGACGGAAGTACAACATCTGTCTGGATTTGAG | + |
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Preference number: 6 (lower is better) Translates to: FLSLEFQAALSF*TTEVQHLSGFE Trigger: CTCAAATCCAGACAGATGTTGTACTTCCGTCGTGCAAAAAGAAAGCGCCGCCTGAAACTCCAGTGAAAGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CCA 72 bp | GAACTTCTCCCGCAGGTCTTCTTCTGTATAGGACTTTaGTATCATAACAAAGATTCTCGTGAGTTCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: ELLPQVFFCIGL*YHNKDSREFFI Trigger: GATGAAGAACTCACGAGAATCTTTGTTATGATACCAAAGTCCTATACAGAAGAAGACCTGCGGGAGAAGTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS CCA 72 bp | CAGAATATATCCTCCAACACGTCTAGTGGCAAAGGATaGGGATTAAACACAACAAACAGCCTTTCTTTCACT | + |
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Preference number: 6 (lower is better) Translates to: QNISSNTSSGKG*GLNTTNSLSFT Trigger: AGTGAAAGAAAGGCTGTTTGTTGTGTTTAATCCCCATCCTTTGCCACTAGACGTGTTGGAGGATATATTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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| CDS TCA 72 bp | AGCTTCTTGGCCTCTGCTATCGTTCTTGTCAAAAGTTaGAAATTCAGATTGCTGTTCTCCAACAAAGGGAAA | + |
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Preference number: 6 (lower is better) Translates to: SFLASAIVLVKS*KFRLLFSNKGK Trigger: TTTCCCTTTGTTGGAGAACAGCAATCTGAATTTTCAACTTTTGACAAGAACGATAGCAGAGGCCAAGAAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046389.5 |
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