RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RBM44 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070732

Ensembl transcript IDs: ENSMUST00000094698.2, ENSMUST00000188818.2

Found 138 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TACTCTAGTACAACAGAACATAGCAAACCCCAGGCCGGAACATGGTaGCCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTT +
Preference number: 1 (lower is better)
Translates to: YSSTTEHSKPQAGTW*PLTLQHLSAHYTQL
Trigger: AAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTGCTATGTTCTGTTGTACTAGAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
3UTR-3UTR TCA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAATTACAAAGCTGTCTaGTTGTATTACCCTCAGCTT +
Preference number: 2 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLNYKAV*LYYPQL
Trigger: AAGCTGAGGGTAATACAATCAGACAGCTTTGTAATT...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
3UTR-3UTR TCA 90 bp CTGAAAAGTACAAATGCAGCTTTAAGCGGTGTGTTAGTTACTATTAGAAAGGGACAGGCCGGAACATGGTaGCCTCTCACACTGCAGCAC +
Preference number: 2 (lower is better)
Translates to: LKSTNAALSGVLVTIRKGQAGTW*PLTLQH
Trigger: GTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTG...TCCCTTTCTAATAGTAACTAACACACCGCTTAAAGCTGCATTTGTACTTTTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
3UTR-3UTR GCA 90 bp GGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATCTGAACAGCTTTTTCCAAATTaGTGTAGAACTTCCTCTGAT +
Preference number: 2 (lower is better)
Translates to: GDLSHCSTSLLTTLSLSEQLFPN*CRTSSD
Trigger: ATCAGAGGAAGTTCTACAGCAATTTGGAAAAAGCTG...TTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
3UTR CAA 90 bp GCAGCTTTAAGCGGTGTGTTAGTTACTATTAGAAAGGGATTCAGCTaGTACTCTAGTACAACAGAACATAGCAAACCCCAGGCCGGAACA +
Preference number: 2 (lower is better)
Translates to: AALSGVLVTIRKGFS*YSSTTEHSKPQAGT
Trigger: TGTTCCGGCCTGGGGTTTGCTATGTTCTGTTGTACTAGAGTACAAGCTGAATCCCTTTCTAATAGTAACTAACACACCGCTTAAAGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
3UTR GCA 72 bp GCAAACCCCAGGCCGGAACATGGTGACCTCTCACACTaGAGCACCTCTCTGCTCACTACACTCAGCTTATCT +
Preference number: 3 (lower is better)
Translates to: ANPRPEHGDLSH*STSLLTTLSLS
Trigger: AGATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
3UTR GCA 72 bp CGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTaGTCACTACACTCAGCTTATCTGAACCCCGTACTC +
Preference number: 3 (lower is better)
Translates to: RNMVTSHTAAPL*SLHSAYLNPVL
Trigger: GAGTACGGGGTTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCATCCACAGTCAGCACCTaGAGCCTCGGCGCTCCTTCC +
Preference number: 4 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSSTVST*SLGAPS
Trigger: GGAAGGAGCGCCGAGGCTTCAGGTGCTGACTGTGGA...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCATGGGGCAGCTCTCTGTaGGTCTCTGCACTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSWGSSL*VSALLP
Trigger: GGGCAGCAGTGCAGAGACGCACAGAGAGCTGCCCCA...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCGGACTCCACCGACAGTaGAGGCAGCTCTTCCAGAGG +
Preference number: 4 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLGLHRQ*RQLFQR
Trigger: CCTCTGGAAGAGCTGCCTCCACTGTCGGTGGAGTCC...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp GCAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCCAGTGTCTGCTGAACTaGAGCTATACATGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: ANPRPEHGDLSHCSTSLLQCLLN*SYTCCC
Trigger: GCAGCAGCATGTATAGCTGCAGTTCAGCAGACACTG...GAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCATGCTCAGATTCCAGCTaGCTTGACTTAGCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSCSDSS*LDLALG
Trigger: GCCCAGAGCTAAGTCAAGGCAGCTGGAATCTGAGCA...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCATGCCACTCCTCAGCTTaGCTCTGCCTCACCATCTTT +
Preference number: 4 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSCHSSA*LCLTIF
Trigger: AAAGATGGTGAGGCAGAGCCAAGCTGAGGAGTGGCA...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCAGCTGTCCTGAGTTTCTaGGAAGTCAGCTCCAATCAG +
Preference number: 4 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSAVLSF*EVSSNQ
Trigger: CTGATTGGAGCTGACTTCTCAGAAACTCAGGACAGC...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCTCCGCTGTGCTGTCCTaGGTTTCTGAGAAGTCAGCT +
Preference number: 4 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLSAVLS*VSEKSA
Trigger: AGCTGACTTCTCAGAAACTCAGGACAGCACAGCGGA...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCAAGCTCGCTCTTCTGTTaGCAAGGAGTCCTCTTTACC +
Preference number: 4 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSSSLFC*QGVLFT
Trigger: GGTAAAGAGGACTCCTTGGCAACAGAAGAGCGAGCT...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCCTGCTGATGTCTGGGTaGAGTTCAGCCAGTCTCTTC +
Preference number: 4 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLLLMSG*SSASLF
Trigger: GAAGAGACTGGCTGAACTGCACCCAGACATCAGCAG...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCCTGACAGCACCTGGATaGCACAGCCTTCTCTTCACA +
Preference number: 4 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLLTAPG*HSLLFT
Trigger: TGTGAAGAGAAGGCTGTGCCATCCAGGTGCTGTCAG...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCAACATGCAGTGTCTGCTaGACTGCAGCTATACATGCT +
Preference number: 4 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSTCSVC*TAAIHA
Trigger: AGCATGTATAGCTGCAGTTCAGCAGACACTGCATGT...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCAAACATCGCTCATGGGTaGTTTACCTTGTTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSNIAHG*FTLFRL
Trigger: CAGCCTGAACAAGGTAAATCACCCATGAGCGATGTT...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp GCAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACAAATAGAAGAGGCTaGGGTGGCATCTTTGTTGGT +
Preference number: 4 (lower is better)
Translates to: ANPRPEHGDLSHCSTSLLTNRRG*GGIFVG
Trigger: ACCAACAAAGATGCCACCTCAGCCTCTTCTATTTGT...GAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp AACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATCTCTCTGTGCGTCTCTaGACTGCTGCCCACACGACC +
Preference number: 4 (lower is better)
Translates to: NMVTSHTAAPLCSLHSAYLSVRL*TAAHTT
Trigger: GGTCGTGTGGGCAGCAGTGCAGAGACGCACAGAGAG...ATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp GCAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCCAAACATCCAGAAGGTaGATCTCTGCCTTTATAGCC +
Preference number: 4 (lower is better)
Translates to: ANPRPEHGDLSHCSTSLLQTSRR*ISAFIA
Trigger: GGCTATAAAGGCAGAGATGCACCTTCTGGATGTTTG...GAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGAGCCTCTATAATGTaGTCTCTGCTGATGTCTGGG +
Preference number: 4 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLRASIM*SLLMSG
Trigger: CCCAGACATCAGCAGAGATCACATTATAGAGGCTCT...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCCAGAAGGTGCATCTCTaGCTTTATAGCCCTCTCAGT +
Preference number: 4 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLQKVHL*LYSPLS
Trigger: ACTGAGAGGGCTATAAAGGCAGAGATGCACCTTCTG...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp GCAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCTTGATGCAGACACTATaGAAGAGCTTGCATTCACTC +
Preference number: 4 (lower is better)
Translates to: ANPRPEHGDLSHCSTSLLLMQTL*KSLHSL
Trigger: GAGTGAATGCAAGCTCTTCCATAGTGTCTGCATCAA...GAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp GCACCTCTCTGCTCACTACACTCAGCTTATCTGAACCCCGTACTCCAATCTATGCTCTCAGTGGTCTTCTaGCAGCACCTGGATGGCACA +
Preference number: 4 (lower is better)
Translates to: APLCSLHSAYLNPVLQSMLSVVF*QHLDGT
Trigger: TGTGCCATCCAGGTGCTGTCAGAAGACCACTGAGAG...CATAGATTGGAGTACGGGGTTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp GCAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACATCAGGTAGGCTTTaGTTATCCAGCTCAGAATTT +
Preference number: 4 (lower is better)
Translates to: ANPRPEHGDLSHCSTSLLTSGRL*LSSSEF
Trigger: AAATTCTGAGCTGGATAATCAAAGCCTACCTGATGT...GAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCGCTCTTCCAGAGGTATaGCCTTATGGACTTTTCCTT +
Preference number: 4 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLALPEV*PYGLFL
Trigger: AAGGAAAAGTCCATAAGGGCATACCTCTGGAAGAGC...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp GCAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCAGAGGTATGCCCTTATaGACTTTTCCTTTCAAGTTC +
Preference number: 4 (lower is better)
Translates to: ANPRPEHGDLSHCSTSLLRGMPL*TFPFKF
Trigger: GAACTTGAAAGGAAAAGTCCATAAGGGCATACCTCT...GAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp GCAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCAACATATCAGAACTTTaGGATGTAGAGACTTGGAGT +
Preference number: 4 (lower is better)
Translates to: ANPRPEHGDLSHCSTSLLNISEL*DVETWS
Trigger: ACTCCAAGTCTCTACATCTCAAAGTTCTGATATGTT...GAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCATTTGTAAATTCCTATTaGGTCCCGCTCTACTTTCCA +
Preference number: 4 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSFVNSY*VPLYFP
Trigger: TGGAAAGTAGAGCGGGACTCAATAGGAATTTACAAA...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp GGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATCTGAATCAAGGGCTCGGTCTTaGGGAAACATGGTAGCATTC +
Preference number: 4 (lower is better)
Translates to: GDLSHCSTSLLTTLSLSESRARS*GNMVAF
Trigger: GAATGCTACCATGTTTCCCCAAGACCGAGCCCTTGA...TTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCGTCTCAGGTAATAACTaGCCAGATTTCATCTGGTTA +
Preference number: 4 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLVSGNN*PDFIWL
Trigger: TAACCAGATGAAATCTGGTCAGTTATTACCTGAGAC...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp GCACCTCTCTGCTCACTACACTCAGCTTATCTGAACCCCGTACTCCAATCTATGCTGGTAATCTGTGACTaGCACCCTTGGTATCACAGG +
Preference number: 4 (lower is better)
Translates to: APLCSLHSAYLNPVLQSMLVICD*HPWYHR
Trigger: CCTGTGATACCAAGGGTGGCAGTCACAGATTACCAG...CATAGATTGGAGTACGGGGTTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp GCACCTCTCTGCTCACTACACTCAGCTTATCTGAACCCCGTACTCCAATCTATGCTTCGTTTGTCACTTTaGCACTCCTCAGCTTGGCTC +
Preference number: 4 (lower is better)
Translates to: APLCSLHSAYLNPVLQSMLRLSL*HSSAWL
Trigger: GAGCCAAGCTGAGGAGTGGCAAAGTGACAAACGAAG...CATAGATTGGAGTACGGGGTTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCTCAAACTCACTTGACTaGGAGAAAATATTCCCTCTG +
Preference number: 4 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLSNSLD*EKIFPL
Trigger: CAGAGGGAATATTTTCTCCCAGTCAAGTGAGTTTGA...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp GCAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCAGGTGGCATCTTTGTTaGTATTTTTCTCCAAATGAT +
Preference number: 4 (lower is better)
Translates to: ANPRPEHGDLSHCSTSLLRWHLC*YFSPND
Trigger: ATCATTTGGAGAAAAATACCAACAAAGATGCCACCT...GAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp AACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATATCTCTGCTGATGTCTaGGTGCAGTTCAGCCAGTCT +
Preference number: 4 (lower is better)
Translates to: NMVTSHTAAPLCSLHSAYISADV*VQFSQS
Trigger: AGACTGGCTGAACTGCACCCAGACATCAGCAGAGAT...ATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp GGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATCTGAAGTTTCAGGTACTTTCTaGTGGTTTAAGGGAGAGCTG +
Preference number: 4 (lower is better)
Translates to: GDLSHCSTSLLTTLSLSEVSGTF*WFKGEL
Trigger: CAGCTCTCCCTTAAACCATCAGAAAGTACCTGAAAC...TTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp GCACCTCTCTGCTCACTACACTCAGCTTATCTGAACCCCGTACTCCAATCTATGGGTTACAATTTTTCTTaGCACCCTGGTCCAAGGGAG +
Preference number: 4 (lower is better)
Translates to: APLCSLHSAYLNPVLQSMGYNFS*HPGPRE
Trigger: CTCCCTTGGACCAGGGTGTCAAGAAAAATTGTAACC...CATAGATTGGAGTACGGGGTTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp AACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATAGCTTGCATTCACTCTaGTGCTCACATGCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: NMVTSHTAAPLCSLHSAYSLHSL*CSHAVS
Trigger: AGACACTGCATGTGAGCAGCAGAGTGAATGCAAGCT...ATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp AACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATGGAAACTCACTGTCTTaGTCAGATTCCAGCTGCCTT +
Preference number: 4 (lower is better)
Translates to: NMVTSHTAAPLCSLHSAYGNSLS*SDSSCL
Trigger: AAGGCAGCTGGAATCTGAGCAAGACAGTGAGTTTCC...ATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCAGGTATAAAAGACATCTaGGACAATGTTTTTAGTAGG +
Preference number: 4 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSGIKDI*DNVFSR
Trigger: CCTACTAAAAACATTGTCCCAGATGTCTTTTATACC...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp AACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATTGTCTCTGTGATGCTTaGTGCAGACACTATGGAAGA +
Preference number: 4 (lower is better)
Translates to: NMVTSHTAAPLCSLHSAYCLCDA*CRHYGR
Trigger: TCTTCCATAGTGTCTGCATCAAGCATCACAGAGACA...ATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCCTCCGTTGCAACCATTaGAAAAGAACATATTTTCTT +
Preference number: 4 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLLRCNH*KRTYFL
Trigger: AAGAAAATATGTTCTTTTCCAATGGTTGCAACGGAG...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp GGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATCTGAACGTCTTTCATTAGCCTaGAAACAAAATCGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: GDLSHCSTSLLTTLSLSERLSLA*KQNRRR
Trigger: CCTTCTCCGATTTTGTTTCCAGGCTAATGAAAGACG...TTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp TTTCCAAATTGCTGTAGAACTTCCTCTGATGAAGGGTCCTCATACTTTCCAAAGTATGCACTCCAGCTCTaGGCTGTGGTACTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: FPNCCRTSSDEGSSYFPKYALQL*AVVLLL
Trigger: CAGCAGGAGTACCACAGCGCAGAGCTGGAGTGCATA...CTTTGGAAAGTATGAGGACCCTTCATCAGAGGAAGTTCTACAGCAATTTGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp TTCCAAATTGCTGTAGAACTTCCTCTGATGAAGGGTCCTCATACTTTCCAAAGAGCACTGCCTTGTACGTaGTGTAGGCAGCTTCCCTCT +
Preference number: 4 (lower is better)
Translates to: FQIAVELPLMKGPHTFQRALPCT*CRQLPS
Trigger: AGAGGGAAGCTGCCTACACCACGTACAAGGCAGTGC...TCTTTGGAAAGTATGAGGACCCTTCATCAGAGGAAGTTCTACAGCAATTTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp GCACCTCTCTGCTCACTACACTCAGCTTATCTGAACCCCGTACTCCAATCTATGTCTGATAAGTCTCTCTaGTCAACAATGCTGTTCTCT +
Preference number: 4 (lower is better)
Translates to: APLCSLHSAYLNPVLQSMSDKSL*STMLFS
Trigger: AGAGAACAGCATTGTTGACCAGAGAGACTTATCAGA...CATAGATTGGAGTACGGGGTTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp TTTCCAAATTGCTGTAGAACTTCCTCTGATGAAGGGTCCTCATACTTTCCAAAGCCTCACATTCCGCTGTaGTGTCCTGAGTTTCTGAGA +
Preference number: 4 (lower is better)
Translates to: FPNCCRTSSDEGSSYFPKPHIPL*CPEFLR
Trigger: TCTCAGAAACTCAGGACAGCACAGCGGAATGTGAGG...CTTTGGAAAGTATGAGGACCCTTCATCAGAGGAAGTTCTACAGCAATTTGGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp AACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATAAGGTTCAATGTATTTaGGGGTATGAACTGAAAAGG +
Preference number: 4 (lower is better)
Translates to: NMVTSHTAAPLCSLHSAYKVQCI*GYELKR
Trigger: CCTTTTCAGTTCATACCCCCAAATACATTGAACCTT...ATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CCA 90 bp TTCCAAATTGCTGTAGAACTTCCTCTGATGAAGGGTCCTCATACTTTCCAAAGAAGCATGCCTTATTTGTaGCACTGCCTTGTACGTGGT +
Preference number: 4 (lower is better)
Translates to: FQIAVELPLMKGPHTFQRSMPYL*HCLVRG
Trigger: ACCACGTACAAGGCAGTGCCACAAATAAGGCATGCT...TCTTTGGAAAGTATGAGGACCCTTCATCAGAGGAAGTTCTACAGCAATTTGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp CTGAAAAGTACAAATGCAGCTTTAAGCGGTGTGTTAGTTACTATTAGAAAGGGACCTTATTTGTGGCACTaGCTTGTACGTGGTGTAGGC +
Preference number: 4 (lower is better)
Translates to: LKSTNAALSGVLVTIRKGPYLWH*LVRGVG
Trigger: GCCTACACCACGTACAAGGCAGTGCCACAAATAAGG...TCCCTTTCTAATAGTAACTAACACACCGCTTAAAGCTGCATTTGTACTTTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
3UTR CAA 72 bp AGCGGTGTGTTAGTTACTATTAGAAAGGGATTCAGCTaGTACTCTAGTACAACAGAACATAGCAAACCCCAG +
Preference number: 4 (lower is better)
Translates to: SGVLVTIRKGFS*YSSTTEHSKPQ
Trigger: CTGGGGTTTGCTATGTTCTGTTGTACTAGAGTACAAGCTGAATCCCTTTCTAATAGTAACTAACACACCGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp TTCCAAATTGCTGTAGAACTTCCTCTGATGAAGGGTCCTCATACTTTCCAAAGAGTCTTCAAACTCACTTaGCTGGGAGAAAATATTCCC +
Preference number: 4 (lower is better)
Translates to: FQIAVELPLMKGPHTFQRVFKLT*LGENIP
Trigger: GGGAATATTTTCTCCCAGTCAAGTGAGTTTGAAGAC...TCTTTGGAAAGTATGAGGACCCTTCATCAGAGGAAGTTCTACAGCAATTTGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp TTTCCAAATTGCTGTAGAACTTCCTCTGATGAAGGGTCCTCATACTTTCCAAAGTGTAGAGACTTGGAGTaGACATTCTTGTGCAAAACC +
Preference number: 4 (lower is better)
Translates to: FPNCCRTSSDEGSSYFPKCRDLE*TFLCKT
Trigger: GGTTTTGCACAAGAATGTTCACTCCAAGTCTCTACA...CTTTGGAAAGTATGAGGACCCTTCATCAGAGGAAGTTCTACAGCAATTTGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR TCA 90 bp CTGAAAAGTACAAATGCAGCTTTAAGCGGTGTGTTAGTTACTATTAGAAAGGGAGAGGCTTTTGTATTGTaGAGAGCCACAGAGAGAAAT +
Preference number: 4 (lower is better)
Translates to: LKSTNAALSGVLVTIRKGEAFVL*RATERN
Trigger: ATTTCTCTCTGTGGCTCTTCACAATACAAAAGCCTC...TCCCTTTCTAATAGTAACTAACACACCGCTTAAAGCTGCATTTGTACTTTTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR GCA 90 bp CTGAAAAGTACAAATGCAGCTTTAAGCGGTGTGTTAGTTACTATTAGAAAGGGAGGTTTAAGGGAGAGCTaGTTCTCTGTAAAATGCCAT +
Preference number: 4 (lower is better)
Translates to: LKSTNAALSGVLVTIRKGGLRES*FSVKCH
Trigger: ATGGCATTTTACAGAGAAGCAGCTCTCCCTTAAACC...TCCCTTTCTAATAGTAACTAACACACCGCTTAAAGCTGCATTTGTACTTTTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 90 bp GAGGCCTTCCTGAGTCACTTCCTGGGGCAGCTCTCTGTGCGTCTCTaGACTGCTGCCCACACGACCAGGCGGTGTTACAGGCCACGCTTC +
Preference number: 5 (lower is better)
Translates to: EAFLSHFLGQLSVRL*TAAHTTRRCYRPRF
Trigger: GAAGCGTGGCCTGTAACACCGCCTGGTCGTGTGGGCAGCAGTGCAGAGACGCACAGAGAGCTGCCCCAGGAAGTGACTCAGGAAGGCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 90 bp CCTGAGTCACTTCCTGGGGCAGCTCTCTGTGCGTCTCTGCACTGCTaGCCACACGACCAGGCGGTGTTACAGGCCACGCTTCGTTTGTCA +
Preference number: 5 (lower is better)
Translates to: PESLPGAALCASLHC*PHDQAVLQATLRLS
Trigger: TGACAAACGAAGCGTGGCCTGTAACACCGCCTGGTCGTGTGGGCAGCAGTGCAGAGACGCACAGAGAGCTGCCCCAGGAAGTGACTCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 90 bp CTTCCTGAGTCACTTCCTGGGGCAGCTCTCTGTGCGTCTCTGCACTaGTGCCCACACGACCAGGCGGTGTTACAGGCCACGCTTCGTTTG +
Preference number: 5 (lower is better)
Translates to: LPESLPGAALCASLH*CPHDQAVLQATLRL
Trigger: CAAACGAAGCGTGGCCTGTAACACCGCCTGGTCGTGTGGGCAGCAGTGCAGAGACGCACAGAGAGCTGCCCCAGGAAGTGACTCAGGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp GCAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCGCGAGCATGCCTTATTaGTGGCACTGCCTTGTACGT +
Preference number: 5 (lower is better)
Translates to: ANPRPEHGDLSHCSTSLLASMPY*WHCLVR
Trigger: ACGTACAAGGCAGTGCCACAAATAAGGCATGCTCGC...GAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCATTGCCACTCCTCAGCTaGGCTCTGCCTCACCATCTT +
Preference number: 5 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSLPLLS*ALPHHL
Trigger: AAGATGGTGAGGCAGAGCCAAGCTGAGGAGTGGCAA...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 90 bp CCACACGACCAGGCGGTGTTACAGGCCACGCTTCGTTTGTCACTTTaGCACTCCTCAGCTTGGCTCTGCCTCACCATCTTTGTCTCTGTG +
Preference number: 5 (lower is better)
Translates to: PHDQAVLQATLRLSL*HSSAWLCLTIFVSV
Trigger: CACAGAGACAAAGATGGTGAGGCAGAGCCAAGCTGAGGAGTGGCAAAGTGACAAACGAAGCGTGGCCTGTAACACCGCCTGGTCGTGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCAGCTTCGTTTGTCACTTaGCCACTCCTCAGCTTGGCT +
Preference number: 5 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSASFVT*PLLSLA
Trigger: AGCCAAGCTGAGGAGTGGCAAAGTGACAAACGAAGC...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 90 bp CCGGCTCAGGGAGGCTTTTGTATTGTGAAGAGCCACAGAGAGAAATaGCCGAGTCATCCAGAGCACAAGGCCCAGACGGCTGGTGAGCAT +
Preference number: 5 (lower is better)
Translates to: PAQGGFCIVKSHREK*PSHPEHKAQTAGEH
Trigger: ATGCTCACCAGCCGTCTGGGCCTTGTGCTCTGGATGACTCGGTCATTTCTCTCTGTGGCTCTTCACAATACAAAAGCCTCCCTGAGCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACAAACCAGTCTTCACTaGCTTCCTGGACGGTTTTAC +
Preference number: 5 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSQTSLH*LPGRFY
Trigger: GTAAAACCGTCCAGGAAGCAAGTGAAGACTGGTTTG...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 90 bp CCTTGGCTGCCATTCCTCACATTCCGCTGTGCTGTCCTGAGTTTCTaGGAAGTCAGCTCCAATCAGCCTCTCTGTGGCATCAAACCAGTC +
Preference number: 5 (lower is better)
Translates to: PWLPFLTFRCAVLSF*EVSSNQPLCGIKPV
Trigger: GACTGGTTTGATGCCACAGAGAGGCTGATTGGAGCTGACTTCTCAGAAACTCAGGACAGCACAGCGGAATGTGAGGAATGGCAGCCAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 90 bp CATCTAGACTGGACCTGCTTACTGTCTTCGCTAAGTGTGCACTTATaGACTCCAGCTCTGCGCTGTGGTACTCCTGCTGCGAGTCTTCGT +
Preference number: 5 (lower is better)
Translates to: HLDWTCLLSSLSVHL*TPALRCGTPAASLR
Trigger: ACGAAGACTCGCAGCAGGAGTACCACAGCGCAGAGCTGGAGTGCATAAGTGCACACTTAGCGAAGACAGTAAGCAGGTCCAGTCTAGATG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094698.2
ENSMUST00000188818.2
CDS CCA 90 bp GTGTTACAGGCCACGCTTCGTTTGTCACTTTGCCACTCCTCAGCTTaGCTCTGCCTCACCATCTTTGTCTCTGTGATGCTTGATGCAGAC +
Preference number: 5 (lower is better)
Translates to: VLQATLRLSLCHSSA*LCLTIFVSVMLDAD
Trigger: GTCTGCATCAAGCATCACAGAGACAAAGATGGTGAGGCAGAGCCAAGCTGAGGAGTGGCAAAGTGACAAACGAAGCGTGGCCTGTAACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCTGGTTACAATTTTTCTaGACACCCTGGTCCAAGGGA +
Preference number: 5 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLWLQFF*TPWSKG
Trigger: TCCCTTGGACCAGGGTGTCAAGAAAAATTGTAACCA...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp CAAACCCCAGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCAAGTCTCTTCATGATCTaGGTGAAACTACGAAGGTTC +
Preference number: 5 (lower is better)
Translates to: QTPGRNMVTSHTAAPLCSSLFMI*VKLRRF
Trigger: GAACCTTCGTAGTTTCACCAAGATCATGAAGAGACT...TGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCTGGGGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 90 bp AATGGATTCCTTGGCTGCCATTCCTCACATTCCGCTGTGCTGTCCTaGGTTTCTGAGAAGTCAGCTCCAATCAGCCTCTCTGTGGCATCA +
Preference number: 5 (lower is better)
Translates to: NGFLGCHSSHSAVLS*VSEKSAPISLSVAS
Trigger: TGATGCCACAGAGAGGCTGATTGGAGCTGACTTCTCAGAAACTCAGGACAGCACAGCGGAATGTGAGGAATGGCAGCCAAGGAATCCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 90 bp TATCACAGGAGAGAAAAAGCCCGGCTCAGGGAGGCTTTTGTATTGTaGAGAGCCACAGAGAGAAATGACCGAGTCATCCAGAGCACAAGG +
Preference number: 5 (lower is better)
Translates to: YHRREKARLREAFVL*RATERNDRVIQSTR
Trigger: CCTTGTGCTCTGGATGACTCGGTCATTTCTCTCTGTGGCTCTTCACAATACAAAAGCCTCCCTGAGCCGGGCTTTTTCTCTCCTGTGATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 90 bp ATGGAAGAGCTTGCATTCACTCTGCTGCTCACATGCAGTGTCTGCTaGACTGCAGCTATACATGCTGCTGCATCTGGCACTGACGTAAGA +
Preference number: 5 (lower is better)
Translates to: MEELAFTLLLTCSVC*TAAIHAAASGTDVR
Trigger: TCTTACGTCAGTGCCAGATGCAGCAGCATGTATAGCTGCAGTTCAGCAGACACTGCATGTGAGCAGCAGAGTGAATGCAAGCTCTTCCAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 90 bp TTTGCCACTCCTCAGCTTGGCTCTGCCTCACCATCTTTGTCTCTGTaGTGCTTGATGCAGACACTATGGAAGAGCTTGCATTCACTCTGC +
Preference number: 5 (lower is better)
Translates to: FATPQLGSASPSLSL*CLMQTLWKSLHSLC
Trigger: GCAGAGTGAATGCAAGCTCTTCCATAGTGTCTGCATCAAGCATCACAGAGACAAAGATGGTGAGGCAGAGCCAAGCTGAGGAGTGGCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CCA 90 bp CTTTCATTAGCCTGGAAACAAAATCGGAGAAGGCAGATAAGAGTTTaGACTCCACCGACAGTGGAGGCAGCTCTTCCAGAGGTATGCCCT +
Preference number: 5 (lower is better)
Translates to: LSLAWKQNRRRQIRV*TPPTVEAALPEVCP
Trigger: AGGGCATACCTCTGGAAGAGCTGCCTCCACTGTCGGTGGAGTCCAAACTCTTATCTGCCTTCTCCGATTTTGTTTCCAGGCTAATGAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp AGGCCGGAACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCTGTCTTCAAACTCACTaGACTGGGAGAAAATATTCC +
Preference number: 5 (lower is better)
Translates to: RPEHGDLSHCSTSLLTTLCLQTH*TGRKYS
Trigger: GGAATATTTTCTCCCAGTCAAGTGAGTTTGAAGACA...GAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTTCCGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp GCACCTCTCTGCTCACTACACTCAGCTTATCTGAACCCCGTACTCCAATCTATGAGGAAACTCACTGTCTaGCTCAGATTCCAGCTGCCT +
Preference number: 5 (lower is better)
Translates to: APLCSLHSAYLNPVLQSMRKLTV*LRFQLP
Trigger: AGGCAGCTGGAATCTGAGCAAGACAGTGAGTTTCCT...CATAGATTGGAGTACGGGGTTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 90 bp GTCAGCTCCAATCAGCCTCTCTGTGGCATCAAACCAGTCTTCACTTaGTTCCTGGACGGTTTTACACTCTTTGTCATTGAGCTTCAGGCA +
Preference number: 5 (lower is better)
Translates to: VSSNQPLCGIKPVFT*FLDGFTLFVIELQA
Trigger: TGCCTGAAGCTCAATGACAAAGAGTGTAAAACCGTCCAGGAAGCAAGTGAAGACTGGTTTGATGCCACAGAGAGGCTGATTGGAGCTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 90 bp TCAATTCTAATGGATTCCTTGGCTGCCATTCCTCACATTCCGCTGTaGTGTCCTGAGTTTCTGAGAAGTCAGCTCCAATCAGCCTCTCTG +
Preference number: 5 (lower is better)
Translates to: SILMDSLAAIPHIPL*CPEFLRSQLQSASL
Trigger: CAGAGAGGCTGATTGGAGCTGACTTCTCAGAAACTCAGGACAGCACAGCGGAATGTGAGGAATGGCAGCCAAGGAATCCATTAGAATTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CCA 90 bp TGCTGTCCTGAGTTTCTGAGAAGTCAGCTCCAATCAGCCTCTCTGTaGCATCAAACCAGTCTTCACTTGCTTCCTGGACGGTTTTACACT +
Preference number: 5 (lower is better)
Translates to: CCPEFLRSQLQSASL*HQTSLHLLPGRFYT
Trigger: AGTGTAAAACCGTCCAGGAAGCAAGTGAAGACTGGTTTGATGCCACAGAGAGGCTGATTGGAGCTGACTTCTCAGAAACTCAGGACAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 90 bp CAGTGTCTGCTGAACTGCAGCTATACATGCTGCTGCATCTGGCACTaGCGTAAGACACACTTCTTTCATCAGCGAGCATGCCTTATTTGT +
Preference number: 5 (lower is better)
Translates to: QCLLNCSYTCCCIWH*RKTHFFHQRACLIC
Trigger: ACAAATAAGGCATGCTCGCTGATGAAAGAAGTGTGTCTTACGTCAGTGCCAGATGCAGCAGCATGTATAGCTGCAGTTCAGCAGACACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp GCACCTCTCTGCTCACTACACTCAGCTTATCTGAACCCCGTACTCCAATCTATGACGGTTTTACACTCTTaGTCATTGAGCTTCAGGCAA +
Preference number: 5 (lower is better)
Translates to: APLCSLHSAYLNPVLQSMTVLHS*SLSFRQ
Trigger: TTGCCTGAAGCTCAATGACAAAGAGTGTAAAACCGT...CATAGATTGGAGTACGGGGTTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp GGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATCTGAATCGCATTACTGTTTTTaGCAAAAGCAAGAGACGCAT +
Preference number: 5 (lower is better)
Translates to: GDLSHCSTSLLTTLSLSESHYCF*QKQETH
Trigger: ATGCGTCTCTTGCTTTTGCAAAAAACAGTAATGCGA...TTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp AACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATGCTGAGGTGGCATCTTaGTTGGTATTTTTCTCCAAA +
Preference number: 5 (lower is better)
Translates to: NMVTSHTAAPLCSLHSAYAEVAS*LVFFSK
Trigger: TTTGGAGAAAAATACCAACAAAGATGCCACCTCAGC...ATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp GCACCTCTCTGCTCACTACACTCAGCTTATCTGAACCCCGTACTCCAATCTATGGGGCGCTGTAATGCTTaGTTCTGGAAAATTCTATTT +
Preference number: 5 (lower is better)
Translates to: APLCSLHSAYLNPVLQSMGRCNA*FWKILF
Trigger: AAATAGAATTTTCCAGAACAAAGCATTACAGCGCCC...CATAGATTGGAGTACGGGGTTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp TTTCCAAATTGCTGTAGAACTTCCTCTGATGAAGGGTCCTCATACTTTCCAAAGGCTTTAAGCAGCCAGTaGAGAGAGGCCTTCCTGAGT +
Preference number: 5 (lower is better)
Translates to: FPNCCRTSSDEGSSYFPKALSSQ*REAFLS
Trigger: ACTCAGGAAGGCCTCTCTCAACTGGCTGCTTAAAGC...CTTTGGAAAGTATGAGGACCCTTCATCAGAGGAAGTTCTACAGCAATTTGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp GGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATCTGAATTACACTCTTTGTCATaGAGCTTCAGGCAATTAAAG +
Preference number: 5 (lower is better)
Translates to: GDLSHCSTSLLTTLSLSELHSLS*SFRQLK
Trigger: CTTTAATTGCCTGAAGCTCAATGACAAAGAGTGTAA...TTCAGATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp AACATGGTGACCTCTCACACTGCAGCACCTCTCTGCTCACTACACTCAGCTTATACTCCGTTGCAACCATaGGAAAAGAACATATTTTCT +
Preference number: 5 (lower is better)
Translates to: NMVTSHTAAPLCSLHSAYTPLQP*EKNIFS
Trigger: AGAAAATATGTTCTTTTCCAATGGTTGCAACGGAGT...ATAAGCTGAGTGTAGTGAGCAGAGAGGTGCTGCAGTGTGAGAGGTCACCATGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 90 bp AATGTTTTTAGTAGGCCTGGAGAAACATCAACATCAGGTAGGCTTTaGTTATCCAGCTCAGAATTTGCTCCTGAAAGGCTGCATGCTTCG +
Preference number: 5 (lower is better)
Translates to: NVFSRPGETSTSGRL*LSSSEFAPERLHAS
Trigger: CGAAGCATGCAGCCTTTCAGGAGCAAATTCTGAGCTGGATAATCAAAGCCTACCTGATGTTGATGTTTCTCCAGGCCTACTAAAAACATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp TTTCCAAATTGCTGTAGAACTTCCTCTGATGAAGGGTCCTCATACTTTCCAAAGACACTATGGAAGAGCTaGCATTCACTCTGCTGCTCA +
Preference number: 5 (lower is better)
Translates to: FPNCCRTSSDEGSSYFPKTLWKS*HSLCCS
Trigger: TGAGCAGCAGAGTGAATGCAAGCTCTTCCATAGTGT...CTTTGGAAAGTATGAGGACCCTTCATCAGAGGAAGTTCTACAGCAATTTGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS-3UTR CAA 90 bp TTTCCAAATTGCTGTAGAACTTCCTCTGATGAAGGGTCCTCATACTTTCCAAAGACAATGCTGTTCTCTTaGTCACTAGCTCGCTCTTCT +
Preference number: 5 (lower is better)
Translates to: FPNCCRTSSDEGSSYFPKTMLFS*SLARSS
Trigger: AGAAGAGCGAGCTAGTGACAAAGAGAACAGCATTGT...CTTTGGAAAGTATGAGGACCCTTCATCAGAGGAAGTTCTACAGCAATTTGGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CCA 90 bp CTTCACAGAGCTGAAATGCCCTGTTACAGTGTTTCTGTCTGTCTGTaGTATCAAATACTTTTCTTAACTCCAAAGAATTCTCATTCAGGG +
Preference number: 5 (lower is better)
Translates to: LHRAEMPCYSVSVCL*YQILFLTPKNSHSG
Trigger: CCCTGAATGAGAATTCTTTGGAGTTAAGAAAAGTATTTGATACCACAGACAGACAGAAACACTGTAACAGGGCATTTCAGCTCTGTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 90 bp AAAGCCTATGTCTGTATCACCATTTTTACAAACATCGCTCATGGGTaGTTTACCTTGTTCAGGCTGACTACTGTCAGGTATAAAAGACAT +
Preference number: 5 (lower is better)
Translates to: KAYVCITIFTNIAHG*FTLFRLTTVRYKRH
Trigger: ATGTCTTTTATACCTGACAGTAGTCAGCCTGAACAAGGTAAATCACCCATGAGCGATGTTTGTAAAAATGGTGATACAGACATAGGCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 72 bp CTTCCTGGGGCAGCTCTCTGTGCGTCTCTGCACTGCTaGCCACACGACCAGGCGGTGTTACAGGCCACGCTT +
Preference number: 6 (lower is better)
Translates to: LPGAALCASLHC*PHDQAVLQATL
Trigger: AAGCGTGGCCTGTAACACCGCCTGGTCGTGTGGGCAGCAGTGCAGAGACGCACAGAGAGCTGCCCCAGGAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 72 bp TCACTTCCTGGGGCAGCTCTCTGTGCGTCTCTGCACTaGTGCCCACACGACCAGGCGGTGTTACAGGCCACG +
Preference number: 6 (lower is better)
Translates to: SLPGAALCASLH*CPHDQAVLQAT
Trigger: CGTGGCCTGTAACACCGCCTGGTCGTGTGGGCAGCAGTGCAGAGACGCACAGAGAGCTGCCCCAGGAAGTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 72 bp CTGAGTCACTTCCTGGGGCAGCTCTCTGTGCGTCTCTaGACTGCTGCCCACACGACCAGGCGGTGTTACAGG +
Preference number: 6 (lower is better)
Translates to: LSHFLGQLSVRL*TAAHTTRRCYR
Trigger: CCTGTAACACCGCCTGGTCGTGTGGGCAGCAGTGCAGAGACGCACAGAGAGCTGCCCCAGGAAGTGACTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CAA 90 bp CACTGCTGCCCACACGACCAGGCGGTGTTACAGGCCACGCTTCGTTaGTCACTTTGCCACTCCTCAGCTTGGCTCTGCCTCACCATCTTT +
Preference number: 6 (lower is better)
Translates to: HCCPHDQAVLQATLR*SLCHSSAWLCLTIF
Trigger: AAAGATGGTGAGGCAGAGCCAAGCTGAGGAGTGGCAAAGTGACAAACGAAGCGTGGCCTGTAACACCGCCTGGTCGTGTGGGCAGCAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CAA 90 bp CCCACACGACCAGGCGGTGTTACAGGCCACGCTTCGTTTGTCACTTaGCCACTCCTCAGCTTGGCTCTGCCTCACCATCTTTGTCTCTGT +
Preference number: 6 (lower is better)
Translates to: PTRPGGVTGHASFVT*PLLSLALPHHLCLC
Trigger: ACAGAGACAAAGATGGTGAGGCAGAGCCAAGCTGAGGAGTGGCAAAGTGACAAACGAAGCGTGGCCTGTAACACCGCCTGGTCGTGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 72 bp CTTATGCACTCCAGCTCTGCGCTGTGGTACTCCTGCTaGGAGTCTTCGTCCACGTCACTCTTCTGCACGTCT +
Preference number: 6 (lower is better)
Translates to: LMHSSSALWYSC*ESSSTSLFCTS
Trigger: AGACGTGCAGAAGAGTGACGTGGACGAAGACTCGCAGCAGGAGTACCACAGCGCAGAGCTGGAGTGCATAAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094698.2
ENSMUST00000188818.2
CDS CAA 72 bp CCAGGCGGTGTTACAGGCCACGCTTCGTTTGTCACTTaGCCACTCCTCAGCTTGGCTCTGCCTCACCATCTT +
Preference number: 6 (lower is better)
Translates to: PGGVTGHASFVT*PLLSLALPHHL
Trigger: AAGATGGTGAGGCAGAGCCAAGCTGAGGAGTGGCAAAGTGACAAACGAAGCGTGGCCTGTAACACCGCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 72 bp CACGTCACTCTTCTGCACGTCTCCACAGTCAGCACCTaGAGCCTCGGCGCTCCTTCCCAATCCAATGCTATT +
Preference number: 6 (lower is better)
Translates to: HVTLLHVSTVST*SLGAPSQSNAI
Trigger: AATAGCATTGGATTGGGAAGGAGCGCCGAGGCTTCAGGTGCTGACTGTGGAGACGTGCAGAAGAGTGACGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094698.2
ENSMUST00000188818.2
CDS GCA 72 bp TGGACCTGCTTACTGTCTTCGCTAAGTGTGCACTTATaGACTCCAGCTCTGCGCTGTGGTACTCCTGCTGCG +
Preference number: 6 (lower is better)
Translates to: WTCLLSSLSVHL*TPALRCGTPAA
Trigger: CGCAGCAGGAGTACCACAGCGCAGAGCTGGAGTGCATAAGTGCACACTTAGCGAAGACAGTAAGCAGGTCCA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094698.2
ENSMUST00000188818.2
CDS GCA 72 bp CAGGCGGTGTTACAGGCCACGCTTCGTTTGTCACTTTaGCACTCCTCAGCTTGGCTCTGCCTCACCATCTTT +
Preference number: 6 (lower is better)
Translates to: QAVLQATLRLSL*HSSAWLCLTIF
Trigger: AAAGATGGTGAGGCAGAGCCAAGCTGAGGAGTGGCAAAGTGACAAACGAAGCGTGGCCTGTAACACCGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 72 bp GCAGCTTCCCTCTACTTCTGCCTGGTAATCTGTGACTaGCACCCTTGGTATCACAGGAGAGAAAAAGCCCGG +
Preference number: 6 (lower is better)
Translates to: AASLYFCLVICD*HPWYHRREKAR
Trigger: CCGGGCTTTTTCTCTCCTGTGATACCAAGGGTGGCAGTCACAGATTACCAGGCAGAAGTAGAGGGAAGCTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CCA 72 bp CTCTACTTCTGCCTGGTAATCTGTGACTGCCACCCTTaGTATCACAGGAGAGAAAAAGCCCGGCTCAGGGAG +
Preference number: 6 (lower is better)
Translates to: LYFCLVICDCHP*YHRREKARLRE
Trigger: CTCCCTGAGCCGGGCTTTTTCTCTCCTGTGATACCAAGGGTGGCAGTCACAGATTACCAGGCAGAAGTAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CAA 72 bp GGCCACGCTTCGTTTGTCACTTTGCCACTCCTCAGCTaGGCTCTGCCTCACCATCTTTGTCTCTGTGATGCT +
Preference number: 6 (lower is better)
Translates to: GHASFVTLPLLS*ALPHHLCLCDA
Trigger: AGCATCACAGAGACAAAGATGGTGAGGCAGAGCCAAGCTGAGGAGTGGCAAAGTGACAAACGAAGCGTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 72 bp GGAGGCTTTTGTATTGTGAAGAGCCACAGAGAGAAATaGCCGAGTCATCCAGAGCACAAGGCCCAGACGGCT +
Preference number: 6 (lower is better)
Translates to: GGFCIVKSHREK*PSHPEHKAQTA
Trigger: AGCCGTCTGGGCCTTGTGCTCTGGATGACTCGGTCATTTCTCTCTGTGGCTCTTCACAATACAAAAGCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 72 bp CTTGGCTGCCATTCCTCACATTCCGCTGTGCTGTCCTaGGTTTCTGAGAAGTCAGCTCCAATCAGCCTCTCT +
Preference number: 6 (lower is better)
Translates to: LGCHSSHSAVLS*VSEKSAPISLS
Trigger: AGAGAGGCTGATTGGAGCTGACTTCTCAGAAACTCAGGACAGCACAGCGGAATGTGAGGAATGGCAGCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 72 bp GTAGGCAGCTTCCCTCTACTTCTGCCTGGTAATCTGTaGCTGCCACCCTTGGTATCACAGGAGAGAAAAAGC +
Preference number: 6 (lower is better)
Translates to: VGSFPLLLPGNL*LPPLVSQERKS
Trigger: GCTTTTTCTCTCCTGTGATACCAAGGGTGGCAGTCACAGATTACCAGGCAGAAGTAGAGGGAAGCTGCCTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 72 bp CTTGCATTCACTCTGCTGCTCACATGCAGTGTCTGCTaGACTGCAGCTATACATGCTGCTGCATCTGGCACT +
Preference number: 6 (lower is better)
Translates to: LAFTLLLTCSVC*TAAIHAAASGT
Trigger: AGTGCCAGATGCAGCAGCATGTATAGCTGCAGTTCAGCAGACACTGCATGTGAGCAGCAGAGTGAATGCAAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CCA 72 bp GACACACTTCTTTCATCAGCGAGCATGCCTTATTTGTaGCACTGCCTTGTACGTGGTGTAGGCAGCTTCCCT +
Preference number: 6 (lower is better)
Translates to: DTLLSSASMPYL*HCLVRGVGSFP
Trigger: AGGGAAGCTGCCTACACCACGTACAAGGCAGTGCCACAAATAAGGCATGCTCGCTGATGAAAGAAGTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CCA 72 bp GAGTTTCTGAGAAGTCAGCTCCAATCAGCCTCTCTGTaGCATCAAACCAGTCTTCACTTGCTTCCTGGACGG +
Preference number: 6 (lower is better)
Translates to: EFLRSQLQSASL*HQTSLHLLPGR
Trigger: CCGTCCAGGAAGCAAGTGAAGACTGGTTTGATGCCACAGAGAGGCTGATTGGAGCTGACTTCTCAGAAACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CAA 90 bp TCTTTCATTAGCCTGGAAACAAAATCGGAGAAGGCAGATAAGAGTTaGGACTCCACCGACAGTGGAGGCAGCTCTTCCAGAGGTATGCCC +
Preference number: 6 (lower is better)
Translates to: SFISLETKSEKADKS*DSTDSGGSSSRGMP
Trigger: GGGCATACCTCTGGAAGAGCTGCCTCCACTGTCGGTGGAGTCCAAACTCTTATCTGCCTTCTCCGATTTTGTTTCCAGGCTAATGAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 72 bp CTGAACTGCAGCTATACATGCTGCTGCATCTGGCACTaGCGTAAGACACACTTCTTTCATCAGCGAGCATGC +
Preference number: 6 (lower is better)
Translates to: LNCSYTCCCIWH*RKTHFFHQRAC
Trigger: GCATGCTCGCTGATGAAAGAAGTGTGTCTTACGTCAGTGCCAGATGCAGCAGCATGTATAGCTGCAGTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 72 bp CCTCAGCTTGGCTCTGCCTCACCATCTTTGTCTCTGTaGTGCTTGATGCAGACACTATGGAAGAGCTTGCAT +
Preference number: 6 (lower is better)
Translates to: PQLGSASPSLSL*CLMQTLWKSLH
Trigger: ATGCAAGCTCTTCCATAGTGTCTGCATCAAGCATCACAGAGACAAAGATGGTGAGGCAGAGCCAAGCTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 72 bp CTTCTTTCATCAGCGAGCATGCCTTATTTGTGGCACTaGCTTGTACGTGGTGTAGGCAGCTTCCCTCTACTT +
Preference number: 6 (lower is better)
Translates to: LLSSASMPYLWH*LVRGVGSFPLL
Trigger: AAGTAGAGGGAAGCTGCCTACACCACGTACAAGGCAGTGCCACAAATAAGGCATGCTCGCTGATGAAAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 72 bp GCACATCTGGTAGCAAACATCCAGAAGGTGCATCTCTaGCTTTATAGCCCTCTCAGTGGTCTTCTGACAGCA +
Preference number: 6 (lower is better)
Translates to: AHLVANIQKVHL*LYSPLSGLLTA
Trigger: TGCTGTCAGAAGACCACTGAGAGGGCTATAAAGGCAGAGATGCACCTTCTGGATGTTTGCTACCAGATGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 72 bp ATGGATTCCTTGGCTGCCATTCCTCACATTCCGCTGTaGTGTCCTGAGTTTCTGAGAAGTCAGCTCCAATCA +
Preference number: 6 (lower is better)
Translates to: MDSLAAIPHIPL*CPEFLRSQLQS
Trigger: TGATTGGAGCTGACTTCTCAGAAACTCAGGACAGCACAGCGGAATGTGAGGAATGGCAGCCAAGGAATCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CCA 72 bp CATACTAGTGCTATTCCCAGTTGTGGAAAGAGGTGGTaGTGTGTACTCTCCAGGGATTTTCACAAGCCGCAC +
Preference number: 6 (lower is better)
Translates to: HTSAIPSCGKRW*CVLSRDFHKPH
Trigger: GTGCGGCTTGTGAAAATCCCTGGAGAGTACACACCACCACCTCTTTCCACAACTGGGAATAGCACTAGTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 72 bp AGGAAACTCACTGTCTTGCTCAGATTCCAGCTGCCTTaGCTTAGCTCTGGGCAGTCTACAAATAGAAGAGGC +
Preference number: 6 (lower is better)
Translates to: RKLTVLLRFQLP*LSSGQSTNRRG
Trigger: GCCTCTTCTATTTGTAGACTGCCCAGAGCTAAGTCAAGGCAGCTGGAATCTGAGCAAGACAGTGAGTTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 72 bp TTGATGCAGACACTATGGAAGAGCTTGCATTCACTCTaGTGCTCACATGCAGTGTCTGCTGAACTGCAGCTA +
Preference number: 6 (lower is better)
Translates to: LMQTLWKSLHSL*CSHAVSAELQL
Trigger: TAGCTGCAGTTCAGCAGACACTGCATGTGAGCAGCAGAGTGAATGCAAGCTCTTCCATAGTGTCTGCATCAA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CCA 72 bp CTCTCTGTGGCATCAAACCAGTCTTCACTTGCTTCCTaGACGGTTTTACACTCTTTGTCATTGAGCTTCAGG +
Preference number: 6 (lower is better)
Translates to: LSVASNQSSLAS*TVLHSLSLSFR
Trigger: CCTGAAGCTCAATGACAAAGAGTGTAAAACCGTCCAGGAAGCAAGTGAAGACTGGTTTGATGCCACAGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CCA 72 bp ATTCATACTAGTGCTATTCCCAGTTGTGGAAAGAGGTaGTGGTGTGTACTCTCCAGGGATTTTCACAAGCCG +
Preference number: 6 (lower is better)
Translates to: IHTSAIPSCGKR*WCVLSRDFHKP
Trigger: CGGCTTGTGAAAATCCCTGGAGAGTACACACCACCACCTCTTTCCACAACTGGGAATAGCACTAGTATGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CCA 72 bp CTGAAGAGCCTCTATAATGTGATCTCTGCTGATGTCTaGGTGCAGTTCAGCCAGTCTCTTCATGATCTTGGT +
Preference number: 6 (lower is better)
Translates to: LKSLYNVISADV*VQFSQSLHDLG
Trigger: ACCAAGATCATGAAGAGACTGGCTGAACTGCACCCAGACATCAGCAGAGATCACATTATAGAGGCTCTTCAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 72 bp GAAGGGCAAAGACCACCGACGTGTATCAAAAAGCCCTaGCCTTTTCCATGCAGTTCACTATTCTTCAATTCT +
Preference number: 6 (lower is better)
Translates to: EGQRPPTCIKKP*PFPCSSLFFNS
Trigger: AGAATTGAAGAATAGTGAACTGCATGGAAAAGGTCAGGGCTTTTTGATACACGTCGGTGGTCTTTGCCCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CAA 72 bp TTCACAAGCCGCACGGTCACAGATTTTCCATTGATTTaGACTCCATTCATTTCCTTCACAGCCATCTTCGCA +
Preference number: 6 (lower is better)
Translates to: FTSRTVTDFPLI*TPFISFTAIFA
Trigger: TGCGAAGATGGCTGTGAAGGAAATGAATGGAGTCAAAATCAATGGAAAATCTGTGACCGTGCGGCTTGTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CAA 90 bp GAGAAACATCAACATCAGGTAGGCTTTGATTATCCAGCTCAGAATTaGCTCCTGAAAGGCTGCATGCTTCGTCTTTCATTAGCCTGGAAA +
Preference number: 6 (lower is better)
Translates to: EKHQHQVGFDYPAQN*LLKGCMLRLSLAWK
Trigger: TTTCCAGGCTAATGAAAGACGAAGCATGCAGCCTTTCAGGAGCAAATTCTGAGCTGGATAATCAAAGCCTACCTGATGTTGATGTTTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CAA 90 bp CCAGGGATTTTCACAAGCCGCACGGTCACAGATTTTCCATTGATTTaGACTCCATTCATTTCCTTCACAGCCATCTTCGCATTACTGTTT +
Preference number: 6 (lower is better)
Translates to: PGIFTSRTVTDFPLI*TPFISFTAIFALLF
Trigger: AAACAGTAATGCGAAGATGGCTGTGAAGGAAATGAATGGAGTCAAAATCAATGGAAAATCTGTGACCGTGCGGCTTGTGAAAATCCCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 72 bp CAAACATCGCTCATGGGTGATTTACCTTGTTCAGGCTaGCTACTGTCAGGTATAAAAGACATCTGGGACAAT +
Preference number: 6 (lower is better)
Translates to: QTSLMGDLPCSG*LLSGIKDIWDN
Trigger: ATTGTCCCAGATGTCTTTTATACCTGACAGTAGTCAGCCTGAACAAGGTAAATCACCCATGAGCGATGTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS TCA 72 bp GTCTGTATCACCATTTTTACAAACATCGCTCATGGGTaGTTTACCTTGTTCAGGCTGACTACTGTCAGGTAT +
Preference number: 6 (lower is better)
Translates to: VCITIFTNIAHG*FTLFRLTTVRY
Trigger: ATACCTGACAGTAGTCAGCCTGAACAAGGTAAATCACCCATGAGCGATGTTTGTAAAAATGGTGATACAGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CCA 72 bp CTATGTCTGTATCACCATTTTTACAAACATCGCTCATaGGTGATTTACCTTGTTCAGGCTGACTACTGTCAG +
Preference number: 6 (lower is better)
Translates to: LCLYHHFYKHRS*VIYLVQADYCQ
Trigger: CTGACAGTAGTCAGCCTGAACAAGGTAAATCACCCATGAGCGATGTTTGTAAAAATGGTGATACAGACATAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CAA 72 bp TCACTTGCTTCCTGGACGGTTTTACACTCTTTGTCATaGAGCTTCAGGCAATTAAAGCCTATGTCTGTATCA +
Preference number: 6 (lower is better)
Translates to: SLASWTVLHSLS*SFRQLKPMSVS
Trigger: TGATACAGACATAGGCTTTAATTGCCTGAAGCTCAATGACAAAGAGTGTAAAACCGTCCAGGAAGCAAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CAA 90 bp AACCAGTCTTCACTTGCTTCCTGGACGGTTTTACACTCTTTGTCATaGAGCTTCAGGCAATTAAAGCCTATGTCTGTATCACCATTTTTA +
Preference number: 6 (lower is better)
Translates to: NQSSLASWTVLHSLS*SFRQLKPMSVSPFL
Trigger: TAAAAATGGTGATACAGACATAGGCTTTAATTGCCTGAAGCTCAATGACAAAGAGTGTAAAACCGTCCAGGAAGCAAGTGAAGACTGGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS GCA 72 bp GAGTTTCAGGTACTTTCTGATGGTTTAAGGGAGAGCTaGTTCTCTGTAAAATGCCATCAAATGCTTTATGAT +
Preference number: 6 (lower is better)
Translates to: EFQVLSDGLRES*FSVKCHQMLYD
Trigger: ATCATAAAGCATTTGATGGCATTTTACAGAGAAGCAGCTCTCCCTTAAACCATCAGAAAGTACCTGAAACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2
CDS CCA 72 bp GCTGAAATGCCCTGTTACAGTGTTTCTGTCTGTCTGTaGTATCAAATACTTTTCTTAACTCCAAAGAATTCT +
Preference number: 6 (lower is better)
Translates to: AEMPCYSVSVCL*YQILFLTPKNS
Trigger: AGAATTCTTTGGAGTTAAGAAAAGTATTTGATACCACAGACAGACAGAAACACTGTAACAGGGCATTTCAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094698.2