Pregenerated sensors for RBM43 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036249Ensembl transcript IDs: ENSMUST00000102767.8, ENSMUST00000102768.8, ENSMUST00000165313.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTGGATTAACGGCATTGCTGATTCACAGTGTTTTCAACTTACAATaGTCATCTGGACGCCACACTATCGTAAAGCAAGAACCACCCACA | + |
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Preference number: 1 (lower is better) Translates to: LGLTALLIHSVFNLQ*SSGRHTIVKQEPPT Trigger: TGTGGGTGGTTCTTGCTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAAAACACTGTGAATCAGCAATGCCGTTAATCCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR CCA 90 bp | AAGCAGTCCTTTCTTCACTGTGGGCAGTTTGGCAAGTCTAGGGTGTTCTGCACACTCCTATACCTTAGATaGGGAAGGGGCAGGGGAAGT | + |
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Preference number: 2 (lower is better) Translates to: KQSFLHCGQFGKSRVFCTLLYLR*GRGRGS Trigger: ACTTCCCCTGCCCCTTCCCCATCTAAGGTATAGGAG...TGTGCAGAACACCCTAGACTTGCCAAACTGCCCACAGTGAAGAAAGGACTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR GCA 90 bp | AACGCAGCAACCAGGGTAAGCAGTCCTTTCTTCACTGTGGGCAGTTTGGCAAGTACCCACAAAAGCCACTaGACAGACTTCTCCCAAGAT | + |
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Preference number: 2 (lower is better) Translates to: NAATRVSSPFFTVGSLASTHKSH*TDFSQD Trigger: ATCTTGGGAGAAGTCTGTGCAGTGGCTTTTGTGGGT...ACTTGCCAAACTGCCCACAGTGAAGAAAGGACTGCTTACCCTGGTTGCTGCGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR CCA 90 bp | CACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACAGCTTCTCCTATACCTTAGATaGGGAAGGGGCAGGGGAAGT | + |
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Preference number: 2 (lower is better) Translates to: HCTDFSQDSPTILTEPQLLLYLR*GRGRGS Trigger: ACTTCCCCTGCCCCTTCCCCATCTAAGGTATAGGAG...AAGCTGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR GCA 90 bp | CACTATCGTAAAGCAAGAACCACCCACAAAAGCCACTGCACAGACTTCTCCCAAGTCCCAGTTGTTGTCTaGTGGGCAACTTTGAATAAG | + |
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Preference number: 2 (lower is better) Translates to: HYRKARTTHKSHCTDFSQVPVVV*WATLNK Trigger: CTTATTCAAAGTTGCCCAGCAGACAACAACTGGGAC...TTGGGAGAAGTCTGTGCAGTGGCTTTTGTGGGTGGTTCTTGCTTTACGATAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR GCA 90 bp | AAAAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCAGTCCCAGTTGTTGTCTaGTGGGCAACTTTGAATAAG | + |
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Preference number: 2 (lower is better) Translates to: KSHCTDFSQDSPTILTEPVPVVV*WATLNK Trigger: CTTATTCAAAGTTGCCCAGCAGACAACAACTGGGAC...TGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTGGCTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR CCA 90 bp | ATTCACAGTGTTTTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGCTCCTATACCTTAGATaGGGAAGGGGCAGGGGAAGT | + |
|
Preference number: 2 (lower is better) Translates to: IHSVFNLQCSSGRHTIVKLLYLR*GRGRGS Trigger: ACTTCCCCTGCCCCTTCCCCATCTAAGGTATAGGAG...CTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAAAACACTGTGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR CCA 90 bp | AAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACACATTCTAATGCTGTGTaGGGTGGGGTGAATGTAAAA | + |
|
Preference number: 2 (lower is better) Translates to: KPLHRLLPRFPHNSNRTTHSNAV*GGVNVK Trigger: TTTTACATTCACCCCACCCCACACAGCATTAGAATG...TGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTGGCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR TCA 90 bp | CGTAAAGCAAGAACCACCCACAAAAGCCACTGCACAGACTTCTCCCAAGATTCCTCTGCTGGGCAACTTTaGATAAGTAGTTTCATATCT | + |
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Preference number: 2 (lower is better) Translates to: RKARTTHKSHCTDFSQDSSAGQL*ISSFIS Trigger: AGATATGAAACTACTTATTCAAAGTTGCCCAGCAGA...GGAATCTTGGGAGAAGTCTGTGCAGTGGCTTTTGTGGGTGGTTCTTGCTTTACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR TCA 90 bp | AAGCAGTCCTTTCTTCACTGTGGGCAGTTTGGCAAGTCTAGGGTGTTCTGCACATCTGCTGGGCAACTTTaGATAAGTAGTTTCATATCT | + |
|
Preference number: 2 (lower is better) Translates to: KQSFLHCGQFGKSRVFCTSAGQL*ISSFIS Trigger: AGATATGAAACTACTTATTCAAAGTTGCCCAGCAGA...TGTGCAGAACACCCTAGACTTGCCAAACTGCCCACAGTGAAGAAAGGACTGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR GCA 90 bp | AAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACAAGTCATACAAACCTATaGAGGGGAAGACTTCTTTTC | + |
|
Preference number: 2 (lower is better) Translates to: KPLHRLLPRFPHNSNRTTSHTNL*RGRLLF Trigger: GAAAAGAAGTCTTCCCCTGCATAGGTTTGTATGACT...TGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTGGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR GCA 90 bp | TTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGCAAGAACCACCCAGTCATACAAACCTATaGAGGGGAAGACTTCTTTTC | + |
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Preference number: 2 (lower is better) Translates to: FNLQCSSGRHTIVKQEPPSHTNL*RGRLLF Trigger: GAAAAGAAGTCTTCCCCTGCATAGGTTTGTATGACT...GGGTGGTTCTTGCTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR TCA 90 bp | TTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGCAAGAACCACCCTCTGCTGGGCAACTTTaGATAAGTAGTTTCATATCT | + |
|
Preference number: 2 (lower is better) Translates to: FNLQCSSGRHTIVKQEPPSAGQL*ISSFIS Trigger: AGATATGAAACTACTTATTCAAAGTTGCCCAGCAGA...GGGTGGTTCTTGCTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR CCA 90 bp | ATTCACAGTGTTTTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGCATTCTAATGCTGTGTaGGGTGGGGTGAATGTAAAA | + |
|
Preference number: 2 (lower is better) Translates to: IHSVFNLQCSSGRHTIVKHSNAV*GGVNVK Trigger: TTTTACATTCACCCCACCCCACACAGCATTAGAATG...CTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAAAACACTGTGAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR CAA 90 bp | AACGCAGCAACCAGGGTAAGCAGTCCTTTCTTCACTGTGGGCAGTTTGGCAAGTGCTTCCCAGGTGAGCTaGACCAACATTCTAATGCTG | + |
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Preference number: 3 (lower is better) Translates to: NAATRVSSPFFTVGSLASASQVS*TNILML Trigger: CAGCATTAGAATGTTGGTCAAGCTCACCTGGGAAGC...ACTTGCCAAACTGCCCACAGTGAAGAAAGGACTGCTTACCCTGGTTGCTGCGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR CAA 90 bp | AAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACAGCTTCCCAGGTGAGCTaGACCAACATTCTAATGCTG | + |
|
Preference number: 3 (lower is better) Translates to: KPLHRLLPRFPHNSNRTTASQVS*TNILML Trigger: CAGCATTAGAATGTTGGTCAAGCTCACCTGGGAAGC...TGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTGGCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR CCA 72 bp | TTCCCAGGTGAGCTTGACCAACATTCTAATGCTGTGTaGGGTGGGGTGAATGTAAAACCCAAGAAGCTAGCA | + |
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Preference number: 3 (lower is better) Translates to: FPGELDQHSNAV*GGVNVKPKKLA Trigger: TGCTAGCTTCTTGGGTTTTACATTCACCCCACCCCACACAGCATTAGAATGTTGGTCAAGCTCACCTGGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR GCA 72 bp | CACTATCGTAAAGCAAGAACCACCCACAAAAGCCACTaGACAGACTTCTCCCAAGATTCCCCCACAATTCTA | + |
|
Preference number: 3 (lower is better) Translates to: HYRKARTTHKSH*TDFSQDSPTIL Trigger: TAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTGGCTTTTGTGGGTGGTTCTTGCTTTACGATAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR CAA 90 bp | AAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACAGGAGGGAAAGTGAGATaGCTTCAACATTTAGTGAGT | + |
|
Preference number: 3 (lower is better) Translates to: KPLHRLLPRFPHNSNRTTGGKVR*LQHLVS Trigger: ACTCACTAAATGTTGAAGCAATCTCACTTTCCCTCC...TGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTGGCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR CCA 72 bp | GCTGATTCACAGTGTTTTCAACTTACAATGCTCATCTaGACGCCACACTATCGTAAAGCAAGAACCACCCAC | + |
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Preference number: 3 (lower is better) Translates to: ADSQCFQLTMLI*TPHYRKARTTH Trigger: GTGGGTGGTTCTTGCTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAAAACACTGTGAATCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR-3UTR CAA 90 bp | TTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGCAAGAACCACCCGGAGGGAAAGTGAGATaGCTTCAACATTTAGTGAGT | + |
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Preference number: 3 (lower is better) Translates to: FNLQCSSGRHTIVKQEPPGGKVR*LQHLVS Trigger: ACTCACTAAATGTTGAAGCAATCTCACTTTCCCTCC...GGGTGGTTCTTGCTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CCA 90 bp | GAGCTGTCAGTCAACGCAGCAACCAGGGTAAGCAGTCCTTTCTTCACTGTGGGCAAGCACAAGTGTTTCTaGGCTGCCGGCAGGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: ELSVNAATRVSSPFFTVGKHKCF*AAGRLS Trigger: GCTGAGCCTGCCGGCAGCCCAGAAACACTTGTGCTT...GCCCACAGTGAAGAAAGGACTGCTTACCCTGGTTGCTGCGTTGACTGACAGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | GAGCTGTCAGTCAACGCAGCAACCAGGGTAAGCAGTCCTTTCTTCACTGTGGGCACCTTTTCACTGAAGTaGGAGACTGTGAGCCGAGGC | + |
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Preference number: 4 (lower is better) Translates to: ELSVNAATRVSSPFFTVGTFSLK*ETVSRG Trigger: GCCTCGGCTCACAGTCTCTCACTTCAGTGAAAAGGT...GCCCACAGTGAAGAAAGGACTGCTTACCCTGGTTGCTGCGTTGACTGACAGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | ACCACAGCTTCCCAGGTGAGCTTGACCAACATTCTAATGCTGTGTGGGGTGGGGCCATCCACCCTCTCCTaGCACAGGACATGGTATTTG | + |
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Preference number: 4 (lower is better) Translates to: TTASQVSLTNILMLCGVGPSTLS*HRTWYL Trigger: CAAATACCATGTCCTGTGTCAGGAGAGGGTGGATGG...CCCCACCCCACACAGCATTAGAATGTTGGTCAAGCTCACCTGGGAAGCTGTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | CGTAAAGCAAGAACCACCCACAAAAGCCACTGCACAGACTTCTCCCAAGATTCCTGTGAGCCGAGGCTCTaGGCCTGGAGGGTGTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: RKARTTHKSHCTDFSQDSCEPRL*AWRVFL Trigger: AAGAAACACCCTCCAGGCTCAGAGCCTCGGCTCACA...GGAATCTTGGGAGAAGTCTGTGCAGTGGCTTTTGTGGGTGGTTCTTGCTTTACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CCA 90 bp | CTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACAGCTTCCAAGCACAAGTGTTTCTaGGCTGCCGGCAGGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: LHRLLPRFPHNSNRTTASKHKCF*AAGRLS Trigger: GCTGAGCCTGCCGGCAGCCCAGAAACACTTGTGCTT...GGAAGCTGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | CACTATCGTAAAGCAAGAACCACCCACAAAAGCCACTGCACAGACTTCTCCCAATGTGAGCCGAGGCTCTaGGCCTGGAGGGTGTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: HYRKARTTHKSHCTDFSQCEPRL*AWRVFL Trigger: AAGAAACACCCTCCAGGCTCAGAGCCTCGGCTCACA...TTGGGAGAAGTCTGTGCAGTGGCTTTTGTGGGTGGTTCTTGCTTTACGATAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR GCA 90 bp | CTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACAGCTTCCCAAGTGTTTCTGGGCTaGCGGCAGGCTCAGCTACAA | + |
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Preference number: 4 (lower is better) Translates to: LHRLLPRFPHNSNRTTASQVFLG*RQAQLQ Trigger: TTGTAGCTGAGCCTGCCGGCAGCCCAGAAACACTTG...GGAAGCTGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR GCA 90 bp | CGTAAAGCAAGAACCACCCACAAAAGCCACTGCACAGACTTCTCCCAAGATTCCCAAGTGTTTCTGGGCTaGCGGCAGGCTCAGCTACAA | + |
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Preference number: 4 (lower is better) Translates to: RKARTTHKSHCTDFSQDSQVFLG*RQAQLQ Trigger: TTGTAGCTGAGCCTGCCGGCAGCCCAGAAACACTTG...GGAATCTTGGGAGAAGTCTGTGCAGTGGCTTTTGTGGGTGGTTCTTGCTTTACG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | AAGCAGTCCTTTCTTCACTGTGGGCAGTTTGGCAAGTCTAGGGTGTTCTGCACAACCTTTTCACTGAAGTaGGAGACTGTGAGCCGAGGC | + |
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Preference number: 4 (lower is better) Translates to: KQSFLHCGQFGKSRVFCTTFSLK*ETVSRG Trigger: GCCTCGGCTCACAGTCTCTCACTTCAGTGAAAAGGT...TGTGCAGAACACCCTAGACTTGCCAAACTGCCCACAGTGAAGAAAGGACTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | AAGCAGTCCTTTCTTCACTGTGGGCAGTTTGGCAAGTCTAGGGTGTTCTGCACACCATCCACCCTCTCCTaGCACAGGACATGGTATTTG | + |
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Preference number: 4 (lower is better) Translates to: KQSFLHCGQFGKSRVFCTPSTLS*HRTWYL Trigger: CAAATACCATGTCCTGTGTCAGGAGAGGGTGGATGG...TGTGCAGAACACCCTAGACTTGCCAAACTGCCCACAGTGAAGAAAGGACTGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CCA 90 bp | AAAAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCAAAGCACAAGTGTTTCTaGGCTGCCGGCAGGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: KSHCTDFSQDSPTILTEPKHKCF*AAGRLS Trigger: GCTGAGCCTGCCGGCAGCCCAGAAACACTTGTGCTT...TGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTGGCTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CCA 90 bp | AAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACATTTCTGAGCTCAAGGTaGAACTCCTGGGCACACTCT | + |
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Preference number: 4 (lower is better) Translates to: KPLHRLLPRFPHNSNRTTFLSSR*NSWAHS Trigger: AGAGTGTGCCCAGGAGTTCCACCTTGAGCTCAGAAA...TGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTGGCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR CAA 72 bp | ACCAGGGTAAGCAGTCCTTTCTTCACTGTGGGCAGTTaGGCAAGTCTAGGGTGTTCTGCACATTACTTGGAT | + |
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Preference number: 4 (lower is better) Translates to: TRVSSPFFTVGS*ASLGCSAHYLD Trigger: ATCCAAGTAATGTGCAGAACACCCTAGACTTGCCAAACTGCCCACAGTGAAGAAAGGACTGCTTACCCTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | ACCACAGCTTCCCAGGTGAGCTTGACCAACATTCTAATGCTGTGTGGGGTGGGGAACTCCTTTGGATTTTaGTGGATATATCACCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: TTASQVSLTNILMLCGVGNSFGF*WIYHLF Trigger: GAAGAGGTGATATATCCATCAAAATCCAAAGGAGTT...CCCCACCCCACACAGCATTAGAATGTTGGTCAAGCTCACCTGGGAAGCTGTGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | AACGCAGCAACCAGGGTAAGCAGTCCTTTCTTCACTGTGGGCAGTTTGGCAAGTCTTTCTAGCTCAATTTaGGTGCGAAAAACAGACAGA | + |
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Preference number: 4 (lower is better) Translates to: NAATRVSSPFFTVGSLASLSSSI*VRKTDR Trigger: TCTGTCTGTTTTTCGCACTCAAATTGAGCTAGAAAG...ACTTGCCAAACTGCCCACAGTGAAGAAAGGACTGCTTACCCTGGTTGCTGCGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR GCA 90 bp | ATTCACAGTGTTTTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGCAAGTGTTTCTGGGCTaGCGGCAGGCTCAGCTACAA | + |
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Preference number: 4 (lower is better) Translates to: IHSVFNLQCSSGRHTIVKQVFLG*RQAQLQ Trigger: TTGTAGCTGAGCCTGCCGGCAGCCCAGAAACACTTG...CTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAAAACACTGTGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CCA 90 bp | AAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACATCAAGGTGGAACTCCTaGGCACACTCTTCAATGAAT | + |
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Preference number: 4 (lower is better) Translates to: KPLHRLLPRFPHNSNRTTSRWNS*AHSSMN Trigger: ATTCATTGAAGAGTGTGCCCAGGAGTTCCACCTTGA...TGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTGGCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | CTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACAGCTTCCCTTTCTAGCTCAATTTaGGTGCGAAAAACAGACAGA | + |
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Preference number: 4 (lower is better) Translates to: LHRLLPRFPHNSNRTTASLSSSI*VRKTDR Trigger: TCTGTCTGTTTTTCGCACTCAAATTGAGCTAGAAAG...GGAAGCTGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CCA 90 bp | AAAAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCATCAAGGTGGAACTCCTaGGCACACTCTTCAATGAAT | + |
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Preference number: 4 (lower is better) Translates to: KSHCTDFSQDSPTILTEPSRWNS*AHSSMN Trigger: ATTCATTGAAGAGTGTGCCCAGGAGTTCCACCTTGA...TGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTGGCTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CCA 90 bp | TTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGCAAGAACCACCCTCAAGGTGGAACTCCTaGGCACACTCTTCAATGAAT | + |
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Preference number: 4 (lower is better) Translates to: FNLQCSSGRHTIVKQEPPSRWNS*AHSSMN Trigger: ATTCATTGAAGAGTGTGCCCAGGAGTTCCACCTTGA...GGGTGGTTCTTGCTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | AAAAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACATGATGGCCAGAAATaGACCTTGCACAGAGATTTT | + |
|
Preference number: 4 (lower is better) Translates to: KSHCTDFSQDSPTILTEPHDGQK*TLHRDF Trigger: AAAATCTCTGTGCAAGGTTCATTTCTGGCCATCATG...TGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTGGCTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | ATTTGGAGGGAAAGTGAGATTGCTTCAACATTTAGTGAGTTCTCTTTTCAAGGTACCTTTTCACTGAAGTaGGAGACTGTGAGCCGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: IWRESEIASTFSEFSFQGTFSLK*ETVSRG Trigger: GCCTCGGCTCACAGTCTCTCACTTCAGTGAAAAGGT...ACCTTGAAAAGAGAACTCACTAAATGTTGAAGCAATCTCACTTTCCCTCCAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR GCA 90 bp | AAGCAGTCCTTTCTTCACTGTGGGCAGTTTGGCAAGTCTAGGGTGTTCTGCACATCTGATGAAGTCTTGTaGAACTTTCTTTTCCTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: KQSFLHCGQFGKSRVFCTSDEVL*NFLFLE Trigger: TTCAAGGAAAAGAAAGTTGCACAAGACTTCATCAGA...TGTGCAGAACACCCTAGACTTGCCAAACTGCCCACAGTGAAGAAAGGACTGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR GCA 90 bp | CTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACAGCTTCCAGTTCTTCTAAAGCCTaGCTAATGTTTCTTTTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LHRLLPRFPHNSNRTTASSSSKA*LMFLFS Trigger: AGAGAAAAGAAACATTAGGCAGGCTTTAGAAGAACT...GGAAGCTGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CCA 90 bp | CTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACAGCTTCCTTTCTAAAGGGGAAATaGCTTTTGATATCAAAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: LHRLLPRFPHNSNRTTASFLKGK*LLISKP Trigger: AGGCTTTGATATCAAAAGCCATTTCCCCTTTAGAAA...GGAAGCTGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | TTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGCAAGAACCACCCAACTCCTTTGGATTTTaGTGGATATATCACCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: FNLQCSSGRHTIVKQEPPNSFGF*WIYHLF Trigger: GAAGAGGTGATATATCCATCAAAATCCAAAGGAGTT...GGGTGGTTCTTGCTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CCA 90 bp | CACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACAGCTTTTTCTAAAGGGGAAATaGCTTTTGATATCAAAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: HCTDFSQDSPTILTEPQLFLKGK*LLISKP Trigger: AGGCTTTGATATCAAAAGCCATTTCCCCTTTAGAAA...AAGCTGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CCA 90 bp | ATTACTTTTTATTCAATGCTAGTCCCAGTTGTTGTCTGCTGGGCAACTTTGAATTTTCTGAGCTCAAGGTaGAACTCCTGGGCACACTCT | + |
|
Preference number: 4 (lower is better) Translates to: ITFYSMLVPVVVCWATLNFLSSR*NSWAHS Trigger: AGAGTGTGCCCAGGAGTTCCACCTTGAGCTCAGAAA...ATTCAAAGTTGCCCAGCAGACAACAACTGGGACTAGCATTGAATAAAAAGTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | ATTCACAGTGTTTTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGCATGATGGCCAGAAATaGACCTTGCACAGAGATTTT | + |
|
Preference number: 4 (lower is better) Translates to: IHSVFNLQCSSGRHTIVKHDGQK*TLHRDF Trigger: AAAATCTCTGTGCAAGGTTCATTTCTGGCCATCATG...CTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAAAACACTGTGAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR GCA 90 bp | TTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGCAAGAACCACCCAGTTCTTCTAAAGCCTaGCTAATGTTTCTTTTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: FNLQCSSGRHTIVKQEPPSSSKA*LMFLFS Trigger: AGAGAAAAGAAACATTAGGCAGGCTTTAGAAGAACT...GGGTGGTTCTTGCTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| 3UTR CAA 72 bp | TCTAGGGTGTTCTGCACATTACTTGGATTAACGGCATaGCTGATTCACAGTGTTTTCAACTTACAATGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: SRVFCTLLGLTA*LIHSVFNLQCS Trigger: TGAGCATTGTAAGTTGAAAACACTGTGAATCAGCAATGCCGTTAATCCAAGTAATGTGCAGAACACCCTAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | ATTCACAGTGTTTTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGAACTCCTTTGGATTTTaGTGGATATATCACCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: IHSVFNLQCSSGRHTIVKNSFGF*WIYHLF Trigger: GAAGAGGTGATATATCCATCAAAATCCAAAGGAGTT...CTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAAAACACTGTGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | ATTTGGAGGGAAAGTGAGATTGCTTCAACATTTAGTGAGTTCTCTTTTCAAGGTCATGATGGCCAGAAATaGACCTTGCACAGAGATTTT | + |
|
Preference number: 4 (lower is better) Translates to: IWRESEIASTFSEFSFQGHDGQK*TLHRDF Trigger: AAAATCTCTGTGCAAGGTTCATTTCTGGCCATCATG...ACCTTGAAAAGAGAACTCACTAAATGTTGAAGCAATCTCACTTTCCCTCCAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR TCA 90 bp | ATTTGGAGGGAAAGTGAGATTGCTTCAACATTTAGTGAGTTCTCTTTTCAAGGTCTTTCTAGCTCAATTTaGGTGCGAAAAACAGACAGA | + |
|
Preference number: 4 (lower is better) Translates to: IWRESEIASTFSEFSFQGLSSSI*VRKTDR Trigger: TCTGTCTGTTTTTCGCACTCAAATTGAGCTAGAAAG...ACCTTGAAAAGAGAACTCACTAAATGTTGAAGCAATCTCACTTTCCCTCCAAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR GCA 90 bp | ATTCACAGTGTTTTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGTCTGATGAAGTCTTGTaGAACTTTCTTTTCCTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: IHSVFNLQCSSGRHTIVKSDEVL*NFLFLE Trigger: TTCAAGGAAAAGAAAGTTGCACAAGACTTCATCAGA...CTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAAAACACTGTGAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR GCA 90 bp | ATTACTTTTTATTCAATGCTAGTCCCAGTTGTTGTCTGCTGGGCAACTTTGAATAGTTCTTCTAAAGCCTaGCTAATGTTTCTTTTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: ITFYSMLVPVVVCWATLNSSSKA*LMFLFS Trigger: AGAGAAAAGAAACATTAGGCAGGCTTTAGAAGAACT...ATTCAAAGTTGCCCAGCAGACAACAACTGGGACTAGCATTGAATAAAAAGTAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CAA 90 bp | GAGCTGTCAGTCAACGCAGCAACCAGGGTAAGCAGTCCTTTCTTCACTGTGGGCTGGAGGGTGTTTCTTTaGTCTGATGAAGTCTTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: ELSVNAATRVSSPFFTVGWRVFL*SDEVLC Trigger: GCACAAGACTTCATCAGACAAAAGAAACACCCTCCA...GCCCACAGTGAAGAAAGGACTGCTTACCCTGGTTGCTGCGTTGACTGACAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS CCA 90 bp | CCTTCCAAAACCAGTAGCTCTTTTCTGAGCTCAAGGTGGAACTCCTaGGCACACTCTTCAATGAATTCTTTCACATGTCTGACGCTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: PSKTSSSFLSSRWNS*AHSSMNSFTCLTLP Trigger: TGGCAGCGTCAGACATGTGAAAGAATTCATTGAAGAGTGTGCCCAGGAGTTCCACCTTGAGCTCAGAAAAGAGCTACTGGTTTTGGAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CAA 90 bp | GAGCTGTCAGTCAACGCAGCAACCAGGGTAAGCAGTCCTTTCTTCACTGTGGGCCAACTCCTTTGGATTTaGATGGATATATCACCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: ELSVNAATRVSSPFFTVGQLLWI*MDISPL Trigger: AAGAGGTGATATATCCATCAAAATCCAAAGGAGTTG...GCCCACAGTGAAGAAAGGACTGCTTACCCTGGTTGCTGCGTTGACTGACAGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS CCA 90 bp | TCTCCCATTCCTTCCAAAACCAGTAGCTCTTTTCTGAGCTCAAGGTaGAACTCCTGGGCACACTCTTCAATGAATTCTTTCACATGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: SPIPSKTSSSFLSSR*NSWAHSSMNSFTCL Trigger: CAGACATGTGAAAGAATTCATTGAAGAGTGTGCCCAGGAGTTCCACCTTGAGCTCAGAAAAGAGCTACTGGTTTTGGAAGGAATGGGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CAA 90 bp | CTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACAGCTTCCCAACTCCTTTGGATTTaGATGGATATATCACCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: LHRLLPRFPHNSNRTTASQLLWI*MDISPL Trigger: AAGAGGTGATATATCCATCAAAATCCAAAGGAGTTG...GGAAGCTGTGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS GCA 90 bp | GATATCAAAGCCTGTTTGAGCTTCATGATGGCCAGAAATGAACCTTaGACAGAGATTTTCCCACTGGGTCCCAATGGGCTAAAGTTTAAA | + |
|
Preference number: 5 (lower is better) Translates to: DIKACLSFMMARNEP*TEIFPLGPNGLKFK Trigger: TTTAAACTTTAGCCCATTGGGACCCAGTGGGAAAATCTCTGTGCAAGGTTCATTTCTGGCCATCATGAAGCTCAAACAGGCTTTGATATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CAA 90 bp | AAAAGCCACTGCACAGACTTCTCCCAAGATTCCCCCACAATTCTAACAGAACCACAACTCCTTTGGATTTaGATGGATATATCACCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: KSHCTDFSQDSPTILTEPQLLWI*MDISPL Trigger: AAGAGGTGATATATCCATCAAAATCCAAAGGAGTTG...TGGTTCTGTTAGAATTGTGGGGGAATCTTGGGAGAAGTCTGTGCAGTGGCTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS-3UTR CAA 90 bp | ATTCACAGTGTTTTCAACTTACAATGCTCATCTGGACGCCACACTATCGTAAAGTGGAGGGTGTTTCTTTaGTCTGATGAAGTCTTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: IHSVFNLQCSSGRHTIVKWRVFL*SDEVLC Trigger: GCACAAGACTTCATCAGACAAAAGAAACACCCTCCA...CTTTACGATAGTGTGGCGTCCAGATGAGCATTGTAAGTTGAAAACACTGTGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS GCA 72 bp | GGAAAATGTCTGTGTCAAGCACAAGTGTTTCTGGGCTaGCGGCAGGCTCAGCTACAAAGGTCCCAAGTATCG | + |
|
Preference number: 6 (lower is better) Translates to: GKCLCQAQVFLG*RQAQLQRSQVS Trigger: CGATACTTGGGACCTTTGTAGCTGAGCCTGCCGGCAGCCCAGAAACACTTGTGCTTGACACAGACATTTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS GCA 72 bp | GCCTGTTTGAGCTTCATGATGGCCAGAAATGAACCTTaGACAGAGATTTTCCCACTGGGTCCCAATGGGCTA | + |
|
Preference number: 6 (lower is better) Translates to: ACLSFMMARNEP*TEIFPLGPNGL Trigger: TAGCCCATTGGGACCCAGTGGGAAAATCTCTGTGCAAGGTTCATTTCTGGCCATCATGAAGCTCAAACAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS CCA 72 bp | ATAAAGGAAAATGTCTGTGTCAAGCACAAGTGTTTCTaGGCTGCCGGCAGGCTCAGCTACAAAGGTCCCAAG | + |
|
Preference number: 6 (lower is better) Translates to: IKENVCVKHKCF*AAGRLSYKGPK Trigger: CTTGGGACCTTTGTAGCTGAGCCTGCCGGCAGCCCAGAAACACTTGTGCTTGACACAGACATTTTCCTTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS TCA 72 bp | TATCAAAGCCTGTTTGAGCTTCATGATGGCCAGAAATaGACCTTGCACAGAGATTTTCCCACTGGGTCCCAA | + |
|
Preference number: 6 (lower is better) Translates to: YQSLFELHDGQK*TLHRDFPTGSQ Trigger: TTGGGACCCAGTGGGAAAATCTCTGTGCAAGGTTCATTTCTGGCCATCATGAAGCTCAAACAGGCTTTGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS CCA 72 bp | ACCAGTAGCTCTTTTCTGAGCTCAAGGTGGAACTCCTaGGCACACTCTTCAATGAATTCTTTCACATGTCTG | + |
|
Preference number: 6 (lower is better) Translates to: TSSSFLSSRWNS*AHSSMNSFTCL Trigger: CAGACATGTGAAAGAATTCATTGAAGAGTGTGCCCAGGAGTTCCACCTTGAGCTCAGAAAAGAGCTACTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS CCA 72 bp | CCTTCCAAAACCAGTAGCTCTTTTCTGAGCTCAAGGTaGAACTCCTGGGCACACTCTTCAATGAATTCTTTC | + |
|
Preference number: 6 (lower is better) Translates to: PSKTSSSFLSSR*NSWAHSSMNSF Trigger: GAAAGAATTCATTGAAGAGTGTGCCCAGGAGTTCCACCTTGAGCTCAGAAAAGAGCTACTGGTTTTGGAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS GCA 72 bp | CACCATCCACCCTCTCCTGACACAGGACATGGTATTTaGTCAGTGTTAGATGATAAAACTCACACTTGTGTT | + |
|
Preference number: 6 (lower is better) Translates to: HHPPSPDTGHGI*SVLDDKTHTCV Trigger: AACACAAGTGTGAGTTTTATCATCTAACACTGAGCAAATACCATGTCCTGTGTCAGGAGAGGGTGGATGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS TCA 72 bp | TTTTTCAGGTCCACTACTAGGCTTTCTAGCTCAATTTaGGTGCGAAAAACAGACAGATCAAGAATGGCCATC | + |
|
Preference number: 6 (lower is better) Translates to: FFRSTTRLSSSI*VRKTDRSRMAI Trigger: GATGGCCATTCTTGATCTGTCTGTTTTTCGCACTCAAATTGAGCTAGAAAGCCTAGTAGTGGACCTGAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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| CDS CAA 72 bp | TCTAAAGGGGAAATGGCTTTTGATATCAAAGCCTGTTaGAGCTTCATGATGGCCAGAAATGAACCTTGCACA | + |
|
Preference number: 6 (lower is better) Translates to: SKGEMAFDIKAC*SFMMARNEPCT Trigger: TGTGCAAGGTTCATTTCTGGCCATCATGAAGCTCAAACAGGCTTTGATATCAAAAGCCATTTCCCCTTTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102767.8 ENSMUST00000102768.8 ENSMUST00000165313.2 |
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