Pregenerated sensors for RBM4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094936Ensembl transcript IDs: ENSMUST00000164209.9, ENSMUST00000178615.8, ENSMUST00000179189.9, ENSMUST00000180248.8, ENSMUST00000237760.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGCTGGGCCCTTTATACCTCATCTGAAGGCATTAAGTACAAGCTATaGGATGCTTGTGGAATGCAGTCTCTTGATTTTGGCAGAACTATA | + |
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Preference number: 1 (lower is better) Translates to: RWALYTSSEGIKYKL*DACGMQSLDFGRTI Trigger: TATAGTTCTGCCAAAATCAAGAGACTGCATTCCACAAGCATCTCATAGCTTGTACTTAATGCCTTCAGATGAGGTATAAAGGGCCCAGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| 3UTR-3UTR TCA 90 bp | AGGGAGGAGACAGCACAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAACGGTTCCTGGGGACTaGATGCACAGAGCCGAGAAC | + |
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Preference number: 2 (lower is better) Translates to: REETAQPHRFLHRRHAGRTVPGD*MHRAEN Trigger: GTTCTCGGCTCTGTGCATTCAGTCCCCAGGAACCGT...TCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTGTGCTGTCTCCTCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000164209.9 ENSMUST00000178615.8 ENSMUST00000180248.8 |
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| 3UTR-3UTR TCA 90 bp | GCACAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAACGGTTCCTGGGGACTaGATGCACAGAGCCGAGAAC | + |
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Preference number: 2 (lower is better) Translates to: AQPHRFLHRRHAGRAELKTVPGD*MHRAEN Trigger: GTTCTCGGCTCTGTGCATTCAGTCCCCAGGAACCGT...TTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000164209.9 ENSMUST00000178615.8 ENSMUST00000180248.8 |
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| 3UTR-3UTR TCA 90 bp | CACAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGACGGTTCCTGGGGACTaGATGCACAGAGCCGAGAAC | + |
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Preference number: 2 (lower is better) Translates to: HSPTGFCIGGMLGEQNSKTVPGD*MHRAEN Trigger: GTTCTCGGCTCTGTGCATTCAGTCCCCAGGAACCGT...CTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000164209.9 ENSMUST00000178615.8 ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| 3UTR-3UTR TCA 90 bp | CACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGAAGCTACGGTTCCTGGGGACTaGATGCACAGAGCCGAGAAC | + |
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Preference number: 2 (lower is better) Translates to: HRFLHRRHAGRAELKGEATVPGD*MHRAEN Trigger: GTTCTCGGCTCTGTGCATTCAGTCCCCAGGAACCGT...AGCTTCCCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000164209.9 ENSMUST00000178615.8 ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| 3UTR-3UTR TCA 90 bp | AGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGAGGAGAACAGGAAATTaGGCAGGAGAGAGAATAGGA | + |
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Preference number: 2 (lower is better) Translates to: SPTGFCIGGMLGEQNSKGRRTGN*AGERIG Trigger: TCCTATTCTCTCTCCTGCTCAATTTCCTGTTCTCCT...CCCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000164209.9 ENSMUST00000178615.8 ENSMUST00000179189.9 ENSMUST00000180248.8 ENSMUST00000237760.2 |
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| 3UTR-3UTR GCA 90 bp | TCTTTGGGCCAAAATAGAAAACTAGGAGCAGTGATTCTCAACAAGGTCACTCCCCCAATACCCACTGACTaGAGTCAGGAGGAAGGGAGG | + |
|
Preference number: 2 (lower is better) Translates to: SLGQNRKLGAVILNKVTPPIPTD*SQEEGR Trigger: CCTCCCTTCCTCCTGACTGCAGTCAGTGGGTATTGG...GGGAGTGACCTTGTTGAGAATCACTGCTCCTAGTTTTCTATTTTGGCCCAAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000178615.8 ENSMUST00000180248.8 ENSMUST00000237760.2 |
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| 3UTR-3UTR TCA 90 bp | TCTTTGGGCCAAAATAGAAAACTAGGAGCAGTGATTCTCAACAAGGTCACTCCCAAATCCAATACCCACTaGCTGCAGTCAGGAGGAAGG | + |
|
Preference number: 2 (lower is better) Translates to: SLGQNRKLGAVILNKVTPKSNTH*LQSGGR Trigger: CCTTCCTCCTGACTGCAGTCAGTGGGTATTGGATTT...GGGAGTGACCTTGTTGAGAATCACTGCTCCTAGTTTTCTATTTTGGCCCAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000178615.8 ENSMUST00000180248.8 ENSMUST00000237760.2 |
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| 3UTR-3UTR TCA 90 bp | TCCTCAAACCTTCACCTTTTTCCTGAAAATAAGTCAAGGGAGATATGTTTACTGAAATCCAATACCCACTaGCTGCAGTCAGGAGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: SSNLHLFPENKSREICLLKSNTH*LQSGGR Trigger: CCTTCCTCCTGACTGCAGTCAGTGGGTATTGGATTT...CAGTAAACATATCTCCCTTGACTTATTTTCAGGAAAAAGGTGAAGGTTTGAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| 3UTR-3UTR CCA 90 bp | AACTGTTTCAATAAAAACATGACACTAAACAGTGGCTCCTCACTGAATCCAAATTTACAAAGGACCCGCTaGGCCCTTTATACCTCATCT | + |
|
Preference number: 2 (lower is better) Translates to: NCFNKNMTLNSGSSLNPNLQRTR*ALYTSS Trigger: AGATGAGGTATAAAGGGCCCAGCGGGTCCTTTGTAA...ATTTGGATTCAGTGAGGAGCCACTGTTTAGTGTCATGTTTTTATTGAAACAGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| 3UTR-3UTR GCA 90 bp | GGCAGAACTATAAATAGTGAAGTGCATCATGAGGTAGTTCTGGCCTATGGAGTATATTTCACTGGAAGGTaGTCCAAATTTCTAAGTCTA | + |
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Preference number: 2 (lower is better) Translates to: GRTINSEVHHEVVLAYGVYFTGR*SKFLSL Trigger: TAGACTTAGAAATTTGGAGCACCTTCCAGTGAAATA...TACTCCATAGGCCAGAACTACCTCATGATGCACTTCACTATTTATAGTTCTGCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| 3UTR-3UTR GCA 90 bp | AACTGTTTCAATAAAAACATGACACTAAACAGTGGCTCCTCACTGAATCCAAATGTACAAGCTATGAGATaGTTGTGGAATGCAGTCTCT | + |
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Preference number: 2 (lower is better) Translates to: NCFNKNMTLNSGSSLNPNVQAMR*LWNAVS Trigger: AGAGACTGCATTCCACAAGCATCTCATAGCTTGTAC...ATTTGGATTCAGTGAGGAGCCACTGTTTAGTGTCATGTTTTTATTGAAACAGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| 3UTR CCA 72 bp | CTCAGTAAGTTTATCAAGGACTTACAAAGGACCCGCTaGGCCCTTTATACCTCATCTGAAGGCATTAAGTAC | + |
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Preference number: 3 (lower is better) Translates to: LSKFIKDLQRTR*ALYTSSEGIKY Trigger: GTACTTAATGCCTTCAGATGAGGTATAAAGGGCCCAGCGGGTCCTTTGTAAGTCCTTGATAAACTTACTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| 3UTR TCA 72 bp | ACTCTGTGGGAGCCATACCTTCATTTTTCCCAAAGATaGAAGCTACCTCTTCTTCCTCAAACCTTCACCTTT | + |
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Preference number: 3 (lower is better) Translates to: TLWEPYLHFSQR*KLPLLPQTFTF Trigger: AAAGGTGAAGGTTTGAGGAAGAAGAGGTAGCTTTCATCTTTGGGAAAAATGAAGGTATGGCTCCCACAGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| 3UTR TCA 72 bp | CTTTATACCTCATCTGAAGGCATTAAGTACAAGCTATaGGATGCTTGTGGAATGCAGTCTCTTGATTTTGGC | + |
|
Preference number: 3 (lower is better) Translates to: LYTSSEGIKYKL*DACGMQSLDFG Trigger: GCCAAAATCAAGAGACTGCATTCCACAAGCATCTCATAGCTTGTACTTAATGCCTTCAGATGAGGTATAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| 3UTR GCA 72 bp | TTCCTTTTATCATTAATGAGCCCTTTACTAAAAGCATaGCTGACACAACATAGGTATCCAGTAGTGGTCAAA | + |
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Preference number: 3 (lower is better) Translates to: FLLSLMSPLLKA*LTQHRYPVVVK Trigger: TTTGACCACTACTGGATACCTATGTTGTGTCAGGCATGCTTTTAGTAAAGGGCTCATTAATGATAAAAGGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| CDS-3UTR CCA 90 bp | AGGGAGGAGACAGCACAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGATCCAACAGTGAGGACTaGGCCTGTAGCGCGACGCAG | + |
|
Preference number: 4 (lower is better) Translates to: REETAQPHRFLHRRHAGRSNSED*ACSATQ Trigger: CTGCGTCGCGCTACAGGCCCAGTCCTCACTGTTGGA...TCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTGTGCTGTCTCCTCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| CDS-3UTR TCA 90 bp | AGGGAGGAGACAGCACAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGATGCTGCTGCAGCTCCTaGAGGCGGCAACAGATGTCT | + |
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Preference number: 4 (lower is better) Translates to: REETAQPHRFLHRRHAGRCCCSS*RRQQMS Trigger: AGACATCTGTTGCCGCCTTCAGGAGCTGCAGCAGCA...TCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTGTGCTGTCTCCTCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| CDS-3UTR GCA 90 bp | CAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGTTGCTCGGTCAAGTCTaGCACGCGGCCCGAACGATC | + |
|
Preference number: 4 (lower is better) Translates to: QPHRFLHRRHAGRAELKGLLGQV*HAARTI Trigger: GATCGTTCGGGCCGCGTGGCAGACTTGACCGAGCAA...CCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR GCA 90 bp | AGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGACAAGCAGCAGCAGCTaGTGCTGCTGCTGCAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SPTGFCIGGMLGEQNSKGTSSSS*CCCCSS Trigger: GGAGCTGCAGCAGCAGCAGCAGCTGCTGCTGCTTGT...CCCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR GCA 90 bp | CAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGACAAGCAGCAGCAGCTaGTGCTGCTGCTGCAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: QPHRFLHRRHAGRAELKGTSSSS*CCCCSS Trigger: GGAGCTGCAGCAGCAGCAGCAGCTGCTGCTGCTTGT...CCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR CCA 90 bp | CAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGTCCAACAGTGAGGACTaGGCCTGTAGCGCGACGCAG | + |
|
Preference number: 4 (lower is better) Translates to: QPHRFLHRRHAGRAELKGSNSED*ACSATQ Trigger: CTGCGTCGCGCTACAGGCCCAGTCCTCACTGTTGGA...CCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR TCA 90 bp | AGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGACGGTTCCTGGGGACTaGATGCACAGAGCCGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: SPTGFCIGGMLGEQNSKGTVPGD*MHRAEN Trigger: GTTCTCGGCTCTGTGCATTCAGTCCCCAGGAACCGT...CCCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000237760.2 |
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| CDS-3UTR TCA 90 bp | CACAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGTGCTGCTGCAGCTCCTaGAGGCGGCAACAGATGTCT | + |
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Preference number: 4 (lower is better) Translates to: HSPTGFCIGGMLGEQNSKCCCSS*RRQQMS Trigger: AGACATCTGTTGCCGCCTTCAGGAGCTGCAGCAGCA...CTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR GCA 90 bp | AGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGATACGCAGAGGCAGCTaGAGCTGCCACTGCCTCATA | + |
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Preference number: 4 (lower is better) Translates to: SPTGFCIGGMLGEQNSKGIRRGS*SCHCLI Trigger: TATGAGGCAGTGGCAGCTGCAGCTGCCTCTGCGTAT...CCCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR CCA 90 bp | CAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGATTGTCTCCAGCTGTaGCTCAGCAGCAGAATGCCC | + |
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Preference number: 4 (lower is better) Translates to: QPHRFLHRRHAGRAELKGDCLQL*LSSRMP Trigger: GGGCATTCTGCTGCTGAGCCACAGCTGGAGACAATC...CCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237760.2 |
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| CDS-3UTR CCA 90 bp | AGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGGCAGCTGCTGAAGCTTaGGACAACTCACTGTCATGC | + |
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Preference number: 4 (lower is better) Translates to: SPTGFCIGGMLGEQNSKGAAAEA*DNSLSC Trigger: GCATGACAGTGAGTTGTCCCAAGCTTCAGCAGCTGC...CCCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR CCA 90 bp | AGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGAGCAGCAGAATGCCCTaGGCTCCATCCATCTCTAAC | + |
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Preference number: 4 (lower is better) Translates to: SPTGFCIGGMLGEQNSKGSSRMP*APSISN Trigger: GTTAGAGATGGATGGAGCCCAGGGCATTCTGCTGCT...CCCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237760.2 |
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| CDS-3UTR TCA 90 bp | GAAGGGAGGAGACAGCACAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGATGCATTCGTTTGCCTTaGAACTCTGTGTTGTCGAGG | + |
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Preference number: 4 (lower is better) Translates to: EGRRQHSPTGFCIGGMLGCIRLP*NSVLSR Trigger: CCTCGACAACACAGAGTTTCAAGGCAAACGAATGCA...TCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTGTGCTGTCTCCTCCCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| CDS-3UTR TCA 90 bp | CACAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGATTCCGAGCAGCTGCTaGAGCTTGGGACAACTCACT | + |
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Preference number: 4 (lower is better) Translates to: HSPTGFCIGGMLGEQNSKIPSSC*SLGQLT Trigger: AGTGAGTTGTCCCAAGCTTCAGCAGCTGCTCGGAAT...CTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR TCA 90 bp | CAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGTGCATTCGTTTGCCTTaGAACTCTGTGTTGTCGAGG | + |
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Preference number: 4 (lower is better) Translates to: QPHRFLHRRHAGRAELKGCIRLP*NSVLSR Trigger: CCTCGACAACACAGAGTTTCAAGGCAAACGAATGCA...CCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR TCA 90 bp | GCACAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAACACACATCCCACCTTaGAACTCTGTGTTGTCGAGG | + |
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Preference number: 4 (lower is better) Translates to: AQPHRFLHRRHAGRAELKTHIPP*NSVLSR Trigger: CCTCGACAACACAGAGTTTCAAGGTGGGATGTGTGT...TTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000164209.9 ENSMUST00000178615.8 |
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| CDS-3UTR CCA 90 bp | CAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGTGTGTTCTGGACTTGTaGCAGCTGAGACAAAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: QPHRFLHRRHAGRAELKGCVLDL*QLRQSL Trigger: CAGACTTTGTCTCAGCTGCCACAAGTCCAGAACACA...CCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR GCA 90 bp | AGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGGCACGTGCATTCGTTTaGCTTGAAACTCTGTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: SPTGFCIGGMLGEQNSKGARAFV*LETLCC Trigger: ACAACACAGAGTTTCAAGGCAAACGAATGCACGTGC...CCCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR GCA 90 bp | CAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGCACGTGCATTCGTTTaGCTTGAAACTCTGTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: QPHRFLHRRHAGRAELKGARAFV*LETLCC Trigger: ACAACACAGAGTTTCAAGGCAAACGAATGCACGTGC...CCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR TCA 90 bp | CACAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGCTAACACCACTTTCTTaGAACTCTGTGTTGTCGAGG | + |
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Preference number: 4 (lower is better) Translates to: HSPTGFCIGGMLGEQNSKLTPLS*NSVLSR Trigger: CCTCGACAACACAGAGTTTCAAGAAAGTGGTGTTAG...CTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237760.2 |
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| CDS-3UTR GCA 90 bp | GAGAGCAGAACTCAAAGGGGAAGCTACAGAAGAGCAAACAGGAGAACAGGAAATTTGCTCGGTCAAGTCTaGCACGCGGCCCGAACGATC | + |
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Preference number: 4 (lower is better) Translates to: ESRTQRGSYRRANRRTGNLLGQV*HAARTI Trigger: GATCGTTCGGGCCGCGTGGCAGACTTGACCGAGCAA...ATTTCCTGTTCTCCTGTTTGCTCTTCTGTAGCTTCCCCTTTGAGTTCTGCTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR GCA 90 bp | CAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGTAAGGCGTACGCACTaGTCCATATTGCTCATTATA | + |
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Preference number: 4 (lower is better) Translates to: QPHRFLHRRHAGRAELKGVRRTH*SILLII Trigger: TATAATGAGCAATATGGAGCAGTGCGTACGCCTTAC...CCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR TCA 90 bp | GAGAGCAGAACTCAAAGGGGAAGCTACAGAAGAGCAAACAGGAGAACAGGAAATACACACATCCCACCTTaGAACTCTGTGTTGTCGAGG | + |
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Preference number: 4 (lower is better) Translates to: ESRTQRGSYRRANRRTGNTHIPP*NSVLSR Trigger: CCTCGACAACACAGAGTTTCAAGGTGGGATGTGTGT...ATTTCCTGTTCTCCTGTTTGCTCTTCTGTAGCTTCCCCTTTGAGTTCTGCTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164209.9 ENSMUST00000178615.8 |
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| CDS-3UTR TCA 90 bp | TCTTTGGGCCAAAATAGAAAACTAGGAGCAGTGATTCTCAACAAGGTCACTCCCATTCCGAGCAGCTGCTaGAGCTTGGGACAACTCACT | + |
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Preference number: 4 (lower is better) Translates to: SLGQNRKLGAVILNKVTPIPSSC*SLGQLT Trigger: AGTGAGTTGTCCCAAGCTTCAGCAGCTGCTCGGAAT...GGGAGTGACCTTGTTGAGAATCACTGCTCCTAGTTTTCTATTTTGGCCCAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| CDS-3UTR TCA 90 bp | TCTTTGGGCCAAAATAGAAAACTAGGAGCAGTGATTCTCAACAAGGTCACTCCCGGCAGAAAAATGGCTTaGGCCCAGGAGTTTAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: SLGQNRKLGAVILNKVTPGRKMA*AQEFKA Trigger: GGCCTTAAACTCCTGGGCTCAAGCCATTTTTCTGCC...GGGAGTGACCTTGTTGAGAATCACTGCTCCTAGTTTTCTATTTTGGCCCAAAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000237760.2 |
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| CDS-3UTR TCA 90 bp | TCTTTGGGCCAAAATAGAAAACTAGGAGCAGTGATTCTCAACAAGGTCACTCCCCCACCTAGAAGAGGCTaGAGGCAGAAAAATGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: SLGQNRKLGAVILNKVTPPPRRG*RQKNGL Trigger: CAAGCCATTTTTCTGCCTTCAGCCTCTTCTAGGTGG...GGGAGTGACCTTGTTGAGAATCACTGCTCCTAGTTTTCTATTTTGGCCCAAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000237760.2 |
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| CDS-3UTR GCA 90 bp | AACTGTTTCAATAAAAACATGACACTAAACAGTGGCTCCTCACTGAATCCAAATATACGCAGAGGCAGCTaGAGCTGCCACTGCCTCATA | + |
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Preference number: 4 (lower is better) Translates to: NCFNKNMTLNSGSSLNPNIRRGS*SCHCLI Trigger: TATGAGGCAGTGGCAGCTGCAGCTGCCTCTGCGTAT...ATTTGGATTCAGTGAGGAGCCACTGTTTAGTGTCATGTTTTTATTGAAACAGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| CDS-3UTR TCA 90 bp | GAGAGCAGAACTCAAAGGGGAAGCTACAGAAGAGCAAACAGGAGAACAGGAAATGTTGTTGTAATACAATaGATCCCCATAACTCATGGT | + |
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Preference number: 4 (lower is better) Translates to: ESRTQRGSYRRANRRTGNVVVIQ*IPITHG Trigger: ACCATGAGTTATGGGGATTCATTGTATTACAACAAC...ATTTCCTGTTCTCCTGTTTGCTCTTCTGTAGCTTCCCCTTTGAGTTCTGCTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR CCA 90 bp | AAAAACCATTTATTTCACTGGAAGGTGCTCCAAATTTCTAAGTCTAGTCTTTGGTGTGTTCTGGACTTGTaGCAGCTGAGACAAAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: KNHLFHWKVLQISKSSLWCVLDL*QLRQSL Trigger: CAGACTTTGTCTCAGCTGCCACAAGTCCAGAACACA...CCAAAGACTAGACTTAGAAATTTGGAGCACCTTCCAGTGAAATAAATGGTTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180248.8 |
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| CDS GCA 90 bp | CTGCTCTGCATAGTTACTATACGCAGAGGCAGCTGCAGCTGCCACTaGCTCATAGGACCGGGCAGCACGGCAGCGCTTGTAGTAGGCATC | + |
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Preference number: 5 (lower is better) Translates to: LLCIVTIRRGSCSCH*LIGPGSTAALVVGI Trigger: GATGCCTACTACAAGCGCTGCCGTGCTGCCCGGTCCTATGAGGCAGTGGCAGCTGCAGCTGCCTCTGCGTATAGTAACTATGCAGAGCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS TCA 90 bp | AAGGCGGCAACAGATGTCTATTGTAGGGATCGAGAGAGGTGGAGGTaGGGTGACTGGCCATGGCTGTGTTCTGGACTTGTGGCAGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: KAATDVYCRDRERWR*GDWPWLCSGLVAAE Trigger: CTCAGCTGCCACAAGTCCAGAACACAGCCATGGCCAGTCACCTCACCTCCACCTCTCTCGATCCCTACAATAGACATCTGTTGCCGCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR CAA 90 bp | AGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGGTGCATTCGTTTGCCTaGAAACTCTGTGTTGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: SPTGFCIGGMLGEQNSKGVHSFA*KLCVVE Trigger: CTCGACAACACAGAGTTTCAAGGCAAACGAATGCAC...CCCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS-3UTR CAA 90 bp | GCACAGCCCCACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAACACACACATCCCACCTaGAAACTCTGTGTTGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: AQPHRFLHRRHAGRAELKHTHPT*KLCVVE Trigger: CTCGACAACACAGAGTTTCAAGGTGGGATGTGTGTG...TTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTGGGGCTGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164209.9 ENSMUST00000178615.8 |
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| CDS-3UTR CAA 90 bp | CACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGAAGCTCACACACATCCCACCTaGAAACTCTGTGTTGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: HRFLHRRHAGRAELKGEAHTHPT*KLCVVE Trigger: CTCGACAACACAGAGTTTCAAGGTGGGATGTGTGTG...AGCTTCCCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164209.9 ENSMUST00000178615.8 |
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| CDS-3UTR CAA 90 bp | CACCGGTTTCTGCATAGGAGGCATGCTGGGAGAGCAGAACTCAAAGGGGAAGCTGTGCATTCGTTTGCCTaGAAACTCTGTGTTGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: HRFLHRRHAGRAELKGEAVHSFA*KLCVVE Trigger: CTCGACAACACAGAGTTTCAAGGCAAACGAATGCAC...AGCTTCCCCTTTGAGTTCTGCTCTCCCAGCATGCCTCCTATGCAGAAACCGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179189.9 ENSMUST00000180248.8 |
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| CDS CCA 90 bp | GGGAGAAGAGATTGTCTCCAGCTGTGGCTCAGCAGCAGAATGCCCTaGGCTCCATCCATCTCTAACACCACTTTCTTGAAACTCTGTGTT | + |
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Preference number: 5 (lower is better) Translates to: GRRDCLQLWLSSRMP*APSISNTTFLKLCV Trigger: AACACAGAGTTTCAAGAAAGTGGTGTTAGAGATGGATGGAGCCCAGGGCATTCTGCTGCTGAGCCACAGCTGGAGACAATCTCTTCTCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237760.2 |
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| CDS-3UTR CAA 90 bp | GAGAGCAGAACTCAAAGGGGAAGCTACAGAAGAGCAAACAGGAGAACAGGAAATTCTAACACCACTTTCTaGAAACTCTGTGTTGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: ESRTQRGSYRRANRRTGNSNTTF*KLCVVE Trigger: CTCGACAACACAGAGTTTCAAGAAAGTGGTGTTAGA...ATTTCCTGTTCTCCTGTTTGCTCTTCTGTAGCTTCCCCTTTGAGTTCTGCTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237760.2 |
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| CDS CCA 72 bp | GATTGTCTCCAGCTGTGGCTCAGCAGCAGAATGCCCTaGGCTCCATCCATCTCTAACACCACTTTCTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: DCLQLWLSSRMP*APSISNTTFLK Trigger: TTTCAAGAAAGTGGTGTTAGAGATGGATGGAGCCCAGGGCATTCTGCTGCTGAGCCACAGCTGGAGACAATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237760.2 |
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