Pregenerated sensors for RBM39 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027620Ensembl transcript IDs: ENSMUST00000029149.13, ENSMUST00000109584.8, ENSMUST00000109587.9, ENSMUST00000137566.8, ENSMUST00000142071.8, ENSMUST00000146297.8, ENSMUST00000147098.8, ENSMUST00000152919.3, ENSMUST00000153514.8, ENSMUST00000154677.8, ENSMUST00000155837.8
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTAGCAGCCAGCCACTATCGATTTCCTGTGACCGATGCCATTCCTaGGATCTTCGCCCATTTCCGTTGGAGGGTTGGGACTGTAAGAGC | + |
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Preference number: 1 (lower is better) Translates to: ASSQPLSISCDRCHS*DLRPFPLEGWDCKS Trigger: GCTCTTACAGTCCCAACCCTCCAACGGAAATGGGCGAAGATCTCAGGAATGGCATCGGTCACAGGAAATCGATAGTGGCTGGCTGCTAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152919.3 |
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| 3UTR CCA 90 bp | GGTCATAAATTCCATCCTAATAGTCAAATCCTGTTACAACTTAAATaGGACTTTCCCAAGTCTTTAGTGGCAGTGGAATTTTGTACTGAA | + |
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Preference number: 1 (lower is better) Translates to: GHKFHPNSQILLQLK*DFPKSLVAVEFCTE Trigger: TTCAGTACAAAATTCCACTGCCACTAAAGACTTGGGAAAGTCCCATTTAAGTTGTAACAGGATTTGACTATTAGGATGGAATTTATGACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000137566.8 ENSMUST00000154677.8 |
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| 3UTR-3UTR TCA 90 bp | ACGCAGCTGCAGCTAAAGCTGAGGCTTCGGTCTGTTGGGAAAGTCGTGTTTGCATCTATCCCGACTGCGTaGGCGGCTTCGTCTCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: TQLQLKLRLRSVGKVVFASIPTA*AASSPF Trigger: GAAAGGAGACGAAGCCGCTCACGCAGTCGGGATAGA...TGCAAACACGACTTTCCCAACAGACCGAAGCCTCAGCTTTAGCTGCAGCTGCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGCCAGCCACTATCGATTTCCTGTGACCGATGCCATTCCTGAGATCTTCGCCGGGACTGTAAGAGCTTaGTGCCACCTCTGTCACACA | + |
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Preference number: 2 (lower is better) Translates to: AASHYRFPVTDAIPEIFAGTVRA*CHLCHT Trigger: TGTGTGACAGAGGTGGCATCAAGCTCTTACAGTCCC...GGCGAAGATCTCAGGAATGGCATCGGTCACAGGAAATCGATAGTGGCTGGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152919.3 |
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| 3UTR-3UTR TCA 90 bp | CTTCCAAATCTCTCGGTCGAATTCTTGCTGCCAGTTGCATGCAGAAAACAGTCCTCTATCCCGACTGCGTaGGCGGCTTCGTCTCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: LPNLSVEFLLPVACRKQSSIPTA*AASSPF Trigger: GAAAGGAGACGAAGCCGCTCACGCAGTCGGGATAGA...GGACTGTTTTCTGCATGCAACTGGCAGCAAGAATTCGACCGAGAGATTTGGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR TCA 90 bp | CATGTGCTATTGTCCCTTTTGTCGGTACCATGGCTCTATTTCTGCCTAAGCCCCGACCGATGCCATTCCTaGGATCTTCGCCCATTTCCG | + |
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Preference number: 2 (lower is better) Translates to: HVLLSLLSVPWLYFCLSPDRCHS*DLRPFP Trigger: CGGAAATGGGCGAAGATCTCAGGAATGGCATCGGTC...GGGGCTTAGGCAGAAATAGAGCCATGGTACCGACAAAAGGGACAATAGCACATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152919.3 |
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| 3UTR-3UTR CCA 90 bp | ACGCAGCTGCAGCTAAAGCTGAGGCTTCGGTCTGTTGGGAAAGTCGTGTTTGCAGGCACTGTTAAATTTTaGTCCGGAGTAGGGACTTCT | + |
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Preference number: 2 (lower is better) Translates to: TQLQLKLRLRSVGKVVFAGTVKF*SGVGTS Trigger: AGAAGTCCCTACTCCGGACCAAAATTTAACAGTGCC...TGCAAACACGACTTTCCCAACAGACCGAAGCCTCAGCTTTAGCTGCAGCTGCGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR TCA 90 bp | ACGCAGCTGCAGCTAAAGCTGAGGCTTCGGTCTGTTGGGAAAGTCGTGTTTGCAACATACACATTGCCCTaGGCTGAATTTTTATCAACA | + |
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Preference number: 2 (lower is better) Translates to: TQLQLKLRLRSVGKVVFATYTLP*AEFLST Trigger: TGTTGATAAAAATTCAGCTCAGGGCAATGTGTATGT...TGCAAACACGACTTTCCCAACAGACCGAAGCCTCAGCTTTAGCTGCAGCTGCGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR GCA 90 bp | CTTCCAAATCTCTCGGTCGAATTCTTGCTGCCAGTTGCATGCAGAAAACAGTCCTTGGAAACACTGTGTTaGAAGAGGTTGAACAGACGC | + |
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Preference number: 2 (lower is better) Translates to: LPNLSVEFLLPVACRKQSLETLC*KRLNRR Trigger: GCGTCTGTTCAACCTCTTGCAACACAGTGTTTCCAA...GGACTGTTTTCTGCATGCAACTGGCAGCAAGAATTCGACCGAGAGATTTGGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR CCA 90 bp | GAAGTAAATGGTCCCCTGGGCCTTTGGACTTTTTGGTTATATGGCCTCTGCTGTGGCCTTTGGACTTTTTaGTTATATGGCCTCTGCTGT | + |
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Preference number: 2 (lower is better) Translates to: EVNGPLGLWTFWLYGLCCGLWTF*LYGLCC Trigger: ACAGCAGAGGCCATATAACCAAAAAGTCCAAAGGCC...ACAGCAGAGGCCATATAACCAAAAAGTCCAAAGGCCCAGGGGACCATTTACTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000109584.8 ENSMUST00000137566.8 ENSMUST00000154677.8 |
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| 3UTR-3UTR TCA 90 bp | CGGAATCTTCTATCCCGACTGCGTGAGCGGCTTCGTCTCCTTTCTTTGCTTCTAACATACACATTGCCCTaGGCTGAATTTTTATCAACA | + |
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Preference number: 2 (lower is better) Translates to: RNLLSRLRERLRLLSLLLTYTLP*AEFLST Trigger: TGTTGATAAAAATTCAGCTCAGGGCAATGTGTATGT...TAGAAGCAAAGAAAGGAGACGAAGCCGCTCACGCAGTCGGGATAGAAGATTCCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR TCA 90 bp | ATTCCATGTGCTATTGTCCCTTTTGTCGGTACCATGGCTCTATTTCTGCCTAAGACTATCGATTTCCTGTaGCCGATGCCATTCCTGAGA | + |
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Preference number: 2 (lower is better) Translates to: IPCAIVPFVGTMALFLPKTIDFL*PMPFLR Trigger: TCTCAGGAATGGCATCGGTCACAGGAAATCGATAGT...CTTAGGCAGAAATAGAGCCATGGTACCGACAAAAGGGACAATAGCACATGGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152919.3 |
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| 3UTR-3UTR GCA 90 bp | ACGCAGCTGCAGCTAAAGCTGAGGCTTCGGTCTGTTGGGAAAGTCGTGTTTGCAACTTCACATACACATTaGCCTGAGCTGAATTTTTAT | + |
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Preference number: 2 (lower is better) Translates to: TQLQLKLRLRSVGKVVFATSHTH*PELNFY Trigger: ATAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGT...TGCAAACACGACTTTCCCAACAGACCGAAGCCTCAGCTTTAGCTGCAGCTGCGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR CCA 90 bp | AATCTCTCGGTCGAATTCTTGCTGCCAGTTGCATGCAGAAAACAGTCCTTGCATGGCACTGTTAAATTTTaGTCCGGAGTAGGGACTTCT | + |
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Preference number: 2 (lower is better) Translates to: NLSVEFLLPVACRKQSLHGTVKF*SGVGTS Trigger: AGAAGTCCCTACTCCGGACCAAAATTTAACAGTGCC...ATGCAAGGACTGTTTTCTGCATGCAACTGGCAGCAAGAATTCGACCGAGAGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR TCA 90 bp | GTCCCCTGGGCCTTTGGACTTTTTGGTTATATGGCCTCTGCTGTAAAGGTGTTTTGCTATAACTGGATTTaGCCTCTTCCATGTAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: VPWAFGLFGYMASAVKVFCYNWI*PLPCKK Trigger: CTTCTTACATGGAAGAGGTCAAATCCAGTTATAGCA...AAACACCTTTACAGCAGAGGCCATATAACCAAAAAGTCCAAAGGCCCAGGGGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000109584.8 ENSMUST00000137566.8 ENSMUST00000154677.8 |
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| 3UTR-3UTR TCA 90 bp | CTTCCAAATCTCTCGGTCGAATTCTTGCTGCCAGTTGCATGCAGAAAACAGTCCGTCTTCTGCTTAATTTaGTGCTATGAGGCAATCCAA | + |
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Preference number: 2 (lower is better) Translates to: LPNLSVEFLLPVACRKQSVFCLI*CYEAIQ Trigger: TTGGATTGCCTCATAGCATCAAATTAAGCAGAAGAC...GGACTGTTTTCTGCATGCAACTGGCAGCAAGAATTCGACCGAGAGATTTGGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR GCA 90 bp | AATCTCTCGGTCGAATTCTTGCTGCCAGTTGCATGCAGAAAACAGTCCTTGCATTTCGTCTCCTTTCTTTaGTTCTACTTCGTTTCCGCT | + |
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Preference number: 2 (lower is better) Translates to: NLSVEFLLPVACRKQSLHFVSFL*FYFVSA Trigger: AGCGGAAACGAAGTAGAAGCAAAGAAAGGAGACGAA...ATGCAAGGACTGTTTTCTGCATGCAACTGGCAGCAAGAATTCGACCGAGAGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR TCA 90 bp | AATCTCTCGGTCGAATTCTTGCTGCCAGTTGCATGCAGAAAACAGTCCTTGCATGTCTTCTGCTTAATTTaGTGCTATGAGGCAATCCAA | + |
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Preference number: 2 (lower is better) Translates to: NLSVEFLLPVACRKQSLHVFCLI*CYEAIQ Trigger: TTGGATTGCCTCATAGCATCAAATTAAGCAGAAGAC...ATGCAAGGACTGTTTTCTGCATGCAACTGGCAGCAAGAATTCGACCGAGAGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR CCA 90 bp | CTGTTACAACTTAAATGGGACTTTCCCAAGTCTTTAGTGGCAGTGGAATTTTGTGGTCCCCTGGGCCTTTaGACTTTTTGGTTATATGGC | + |
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Preference number: 2 (lower is better) Translates to: LLQLKWDFPKSLVAVEFCGPLGL*TFWLYG Trigger: GCCATATAACCAAAAAGTCCAAAGGCCCAGGGGACC...ACAAAATTCCACTGCCACTAAAGACTTGGGAAAGTCCCATTTAAGTTGTAACAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000109584.8 ENSMUST00000137566.8 ENSMUST00000154677.8 |
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| 3UTR-3UTR TCA 90 bp | CAAATCCTGTTACAACTTAAATGGGACTTTCCCAAGTCTTTAGTGGCAGTGGAATGTACTGAACATCATTaGAGTAAATGGTCCCCTGGG | + |
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Preference number: 2 (lower is better) Translates to: QILLQLKWDFPKSLVAVECTEHH*SKWSPG Trigger: CCCAGGGGACCATTTACTTCAATGATGTTCAGTACA...TTCCACTGCCACTAAAGACTTGGGAAAGTCCCATTTAAGTTGTAACAGGATTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109584.8 ENSMUST00000137566.8 ENSMUST00000154677.8 |
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| 3UTR-3UTR GCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGTTGGAAACACTGTGTTaGAAGAGGTTGAACAGACGC | + |
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Preference number: 2 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLLETLC*KRLNRR Trigger: GCGTCTGTTCAACCTCTTGCAACACAGTGTTTCCAA...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142071.8 |
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| 3UTR-3UTR CCA 90 bp | CAAATCCTGTTACAACTTAAATGGGACTTTCCCAAGTCTTTAGTGGCAGTGGAAGGCCTTTGGACTTTTTaGTTATATGGCCTCTGCTGT | + |
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Preference number: 2 (lower is better) Translates to: QILLQLKWDFPKSLVAVEGLWTF*LYGLCC Trigger: ACAGCAGAGGCCATATAACCAAAAAGTCCAAAGGCC...TTCCACTGCCACTAAAGACTTGGGAAAGTCCCATTTAAGTTGTAACAGGATTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000109584.8 ENSMUST00000137566.8 ENSMUST00000154677.8 |
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| 3UTR-3UTR CCA 90 bp | AATAGTCAAATCCTGTTACAACTTAAATGGGACTTTCCCAAGTCTTTAGTGGCAGGTCCCCTGGGCCTTTaGACTTTTTGGTTATATGGC | + |
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Preference number: 2 (lower is better) Translates to: NSQILLQLKWDFPKSLVAGPLGL*TFWLYG Trigger: GCCATATAACCAAAAAGTCCAAAGGCCCAGGGGACC...TGCCACTAAAGACTTGGGAAAGTCCCATTTAAGTTGTAACAGGATTTGACTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000137566.8 ENSMUST00000154677.8 |
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| 3UTR-3UTR GCA 90 bp | AATCTCTCGGTCGAATTCTTGCTGCCAGTTGCATGCAGAAAACAGTCCTTGCATACTTCACATACACATTaGCCTGAGCTGAATTTTTAT | + |
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Preference number: 2 (lower is better) Translates to: NLSVEFLLPVACRKQSLHTSHTH*PELNFY Trigger: ATAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGT...ATGCAAGGACTGTTTTCTGCATGCAACTGGCAGCAAGAATTCGACCGAGAGATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR CCA 90 bp | CAACTTAAATGGGACTTTCCCAAGTCTTTAGTGGCAGTGGAATTTTGTACTGAAGGCCTTTGGACTTTTTaGTTATATGGCCTCTGCTGT | + |
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Preference number: 2 (lower is better) Translates to: QLKWDFPKSLVAVEFCTEGLWTF*LYGLCC Trigger: ACAGCAGAGGCCATATAACCAAAAAGTCCAAAGGCC...TTCAGTACAAAATTCCACTGCCACTAAAGACTTGGGAAAGTCCCATTTAAGTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000109584.8 ENSMUST00000137566.8 ENSMUST00000154677.8 |
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| 3UTR-3UTR TCA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACAACCTTTGCTGAACCATaGGCCAAATACATGAATGTG | + |
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Preference number: 2 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTTFAEP*AKYMNV Trigger: CACATTCATGTATTTGGCTCATGGTTCAGCAAAGGT...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| 3UTR-3UTR TCA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCTTACGTCAGCCACCTTaGGGAAATGCAGGGATCATT | + |
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Preference number: 2 (lower is better) Translates to: IILKSHSCQIIKIKCQAALRQPP*GNAGII Trigger: AATGATCCCTGCATTTCCTCAAGGTGGCTGACGTAA...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| 3UTR-3UTR TCA 90 bp | AGTCAAATCCTGTTACAACTTAAATGGGACTTTCCCAAGTCTTTAGTGGCAGTGTGCTATAACTGGATTTaGCCTCTTCCATGTAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: SQILLQLKWDFPKSLVAVCYNWI*PLPCKK Trigger: CTTCTTACATGGAAGAGGTCAAATCCAGTTATAGCA...CACTGCCACTAAAGACTTGGGAAAGTCCCATTTAAGTTGTAACAGGATTTGACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109584.8 ENSMUST00000137566.8 ENSMUST00000154677.8 |
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| 3UTR-3UTR TCA 90 bp | AATAGTCAAATCCTGTTACAACTTAAATGGGACTTTCCCAAGTCTTTAGTGGCATGTACTGAACATCATTaGAGTAAATGGTCCCCTGGG | + |
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Preference number: 2 (lower is better) Translates to: NSQILLQLKWDFPKSLVACTEHH*SKWSPG Trigger: CCCAGGGGACCATTTACTTCAATGATGTTCAGTACA...TGCCACTAAAGACTTGGGAAAGTCCCATTTAAGTTGTAACAGGATTTGACTATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000137566.8 ENSMUST00000154677.8 |
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| 3UTR-3UTR TCA 90 bp | AAATGGGACTTTCCCAAGTCTTTAGTGGCAGTGGAATTTTGTACTGAACATCATTGCTATAACTGGATTTaGCCTCTTCCATGTAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: KWDFPKSLVAVEFCTEHHCYNWI*PLPCKK Trigger: CTTCTTACATGGAAGAGGTCAAATCCAGTTATAGCA...ATGATGTTCAGTACAAAATTCCACTGCCACTAAAGACTTGGGAAAGTCCCATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109584.8 ENSMUST00000137566.8 ENSMUST00000154677.8 |
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| 3UTR-3UTR GCA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCTCTCTTGCCCAAGACTaGTTACTCAATCTGTTACGT | + |
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Preference number: 2 (lower is better) Translates to: IILKSHSCQIIKIKCQAASLAQD*LLNLLR Trigger: ACGTAACAGATTGAGTAAGCAGTCTTGGGCAAGAGA...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| 3UTR-3UTR GCA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCGACAAAACCTTTTTCTaGATTTCCCATCTCTTGCCC | + |
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Preference number: 2 (lower is better) Translates to: IILKSHSCQIIKIKCQAADKTFF*ISHLLP Trigger: GGGCAAGAGATGGGAAATGCAGAAAAAGGTTTTGTC...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| 3UTR-3UTR GCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGACTTCACATACACATTaGCCTGAGCTGAATTTTTAT | + |
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Preference number: 2 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLTSHTH*PELNFY Trigger: ATAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGT...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142071.8 |
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| 3UTR-3UTR CCA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACAACTAAATGTGGATTCTaGAAACCTTTGCTGAACCAT | + |
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Preference number: 2 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTTKCGF*KPLLNH Trigger: ATGGTTCAGCAAAGGTTTCCAGAATCCACATTTAGT...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| 3UTR-3UTR TCA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCACATACACATTGCCCTaGGCTGAATTTTTATCAACA | + |
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Preference number: 2 (lower is better) Translates to: IILKSHSCQIIKIKCQAATYTLP*AEFLST Trigger: TGTTGATAAAAATTCAGCTCAGGGCAATGTGTATGT...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142071.8 |
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| 3UTR-3UTR CCA 90 bp | TATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCATACTAAATGTGGATTCTaGAAACCTTTGCTGAACCAT | + |
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Preference number: 2 (lower is better) Translates to: YFEIPFLPNNQDQMPSSHTKCGF*KPLLNH Trigger: ATGGTTCAGCAAAGGTTTCCAGAATCCACATTTAGT...ATGGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| 3UTR-3UTR CAA 90 bp | GCTCTATTTCTGCCTAAGCCCCAAGTGGCCATGCTAGCAGCCAGCCACTATCGATGGGACTGTAAGAGCTaGATGCCACCTCTGTCACAC | + |
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Preference number: 3 (lower is better) Translates to: ALFLPKPQVAMLAASHYRWDCKS*MPPLSH Trigger: GTGTGACAGAGGTGGCATCAAGCTCTTACAGTCCCA...TCGATAGTGGCTGGCTGCTAGCATGGCCACTTGGGGCTTAGGCAGAAATAGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152919.3 |
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| 3UTR TCA 72 bp | CAGCCACTATCGATTTCCTGTGACCGATGCCATTCCTaGGATCTTCGCCCATTTCCGTTGGAGGGTTGGGAC | + |
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Preference number: 3 (lower is better) Translates to: QPLSISCDRCHS*DLRPFPLEGWD Trigger: GTCCCAACCCTCCAACGGAAATGGGCGAAGATCTCAGGAATGGCATCGGTCACAGGAAATCGATAGTGGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152919.3 |
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| 3UTR-3UTR CAA 90 bp | ACGCAGCTGCAGCTAAAGCTGAGGCTTCGGTCTGTTGGGAAAGTCGTGTTTGCACTCTCGGTCGAATTCTaGCTGCCAGTTGCATGCAGA | + |
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Preference number: 3 (lower is better) Translates to: TQLQLKLRLRSVGKVVFALSVEF*LPVACR Trigger: TCTGCATGCAACTGGCAGCAAGAATTCGACCGAGAG...TGCAAACACGACTTTCCCAACAGACCGAAGCCTCAGCTTTAGCTGCAGCTGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR CAA 90 bp | ACGCAGCTGCAGCTAAAGCTGAGGCTTCGGTCTGTTGGGAAAGTCGTGTTTGCAACTGAAGACGTCCAGTaGTTCCCAAGTCAATTCCAG | + |
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Preference number: 3 (lower is better) Translates to: TQLQLKLRLRSVGKVVFATEDVQ*FPSQFQ Trigger: CTGGAATTGACTTGGGAACAACTGGACGTCTTCAGT...TGCAAACACGACTTTCCCAACAGACCGAAGCCTCAGCTTTAGCTGCAGCTGCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
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| 3UTR-3UTR CAA 90 bp | GTCCCCTGGGCCTTTGGACTTTTTGGTTATATGGCCTCTGCTGTAAAGGTGTTTGGGCCTTTGGACTTTTaGGTTATATGGCCTCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: VPWAFGLFGYMASAVKVFGPLDF*VIWPLL Trigger: CAGCAGAGGCCATATAACCAAAAAGTCCAAAGGCCC...AAACACCTTTACAGCAGAGGCCATATAACCAAAAAGTCCAAAGGCCCAGGGGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000109584.8 ENSMUST00000137566.8 ENSMUST00000154677.8 |
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| 3UTR-3UTR CAA 90 bp | ACGCAGCTGCAGCTAAAGCTGAGGCTTCGGTCTGTTGGGAAAGTCGTGTTTGCACCTTTTGTAAATTGTTaGCCATTGCAGCAGCTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: TQLQLKLRLRSVGKVVFAPFVNC*PLQQLC Trigger: ACAGAGCTGCTGCAATGGCAAACAATTTACAAAAGG...TGCAAACACGACTTTCCCAACAGACCGAAGCCTCAGCTTTAGCTGCAGCTGCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000153514.8 ENSMUST00000155837.8 |
||
| 3UTR-3UTR CAA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACACTGTGTTGCAAGAGGTaGAACAGACGCAGCTGCAGC | + |
|
Preference number: 3 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTLCCKR*NRRSCS Trigger: GCTGCAGCTGCGTCTGTTCAACCTCTTGCAACACAG...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142071.8 |
||
| 3UTR-3UTR CAA 90 bp | GAAGTAAATGGTCCCCTGGGCCTTTGGACTTTTTGGTTATATGGCCTCTGCTGTTTAGCACTGTTCAACTaGTTCTCATCCATGGCTCTA | + |
|
Preference number: 3 (lower is better) Translates to: EVNGPLGLWTFWLYGLCCLALFN*FSSMAL Trigger: TAGAGCCATGGATGAGAACAAGTTGAACAGTGCTAA...ACAGCAGAGGCCATATAACCAAAAAGTCCAAAGGCCCAGGGGACCATTTACTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154677.8 |
||
| 3UTR-3UTR CAA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACAGGATTCTGGAAACCTTaGCTGAACCATGAGCCAAAT | + |
|
Preference number: 3 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTGFWKP*LNHEPN Trigger: ATTTGGCTCATGGTTCAGCAAAGGTTTCCAGAATCC...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| 3UTR-3UTR CAA 90 bp | CATCCTAATAGTCAAATCCTGTTACAACTTAAATGGGACTTTCCCAAGTCTTTATGGTCCCCTGGGCCTTaGGACTTTTTGGTTATATGG | + |
|
Preference number: 3 (lower is better) Translates to: HPNSQILLQLKWDFPKSLWSPGP*DFLVIW Trigger: CCATATAACCAAAAAGTCCAAAGGCCCAGGGGACCA...TAAAGACTTGGGAAAGTCCCATTTAAGTTGTAACAGGATTTGACTATTAGGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000137566.8 ENSMUST00000154677.8 |
||
| 3UTR-3UTR CAA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCGGATTCTGGAAACCTTaGCTGAACCATGAGCCAAAT | + |
|
Preference number: 3 (lower is better) Translates to: IILKSHSCQIIKIKCQAAGFWKP*LNHEPN Trigger: ATTTGGCTCATGGTTCAGCAAAGGTTTCCAGAATCC...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| 3UTR GCA 72 bp | TTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATaGCAAGCAGCCATACAGCCACTTAGACTTTTCACA | + |
|
Preference number: 3 (lower is better) Translates to: LKSHSCQIIKIK*QAAIQPLRLFT Trigger: TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| 3UTR CCA 72 bp | TTCCATCCTAATAGTCAAATCCTGTTACAACTTAAATaGGACTTTCCCAAGTCTTTAGTGGCAGTGGAATTT | + |
|
Preference number: 3 (lower is better) Translates to: FHPNSQILLQLK*DFPKSLVAVEF Trigger: AAATTCCACTGCCACTAAAGACTTGGGAAAGTCCCATTTAAGTTGTAACAGGATTTGACTATTAGGATGGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000137566.8 ENSMUST00000154677.8 |
||
| CDS-3UTR TCA 90 bp | GTTGGAAACACTGTGTTGCAAGAGGTTGAACAGACGCAGCTGCAGCTAAAGCTGTCTATCCCGACTGCGTaGGCGGCTTCGTCTCCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: VGNTVLQEVEQTQLQLKLSIPTA*AASSPF Trigger: GAAAGGAGACGAAGCCGCTCACGCAGTCGGGATAGA...CAGCTTTAGCTGCAGCTGCGTCTGTTCAACCTCTTGCAACACAGTGTTTCCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142071.8 |
||
| CDS-3UTR GCA 90 bp | GTTGGAAACACTGTGTTGCAAGAGGTTGAACAGACGCAGCTGCAGCTAAAGCTGTCTCGGTCGAATTCTTaGTGCCAGTTGCATGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: VGNTVLQEVEQTQLQLKLSRSNS*CQLHAE Trigger: TTCTGCATGCAACTGGCAGCAAGAATTCGACCGAGA...CAGCTTTAGCTGCAGCTGCGTCTGTTCAACCTCTTGCAACACAGTGTTTCCAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142071.8 |
||
| CDS-3UTR CCA 90 bp | GAAGTAAATGGTCCCCTGGGCCTTTGGACTTTTTGGTTATATGGCCTCTGCTGTTTCGCCCATTTCCGTTaGAGGGTTGGGACTGTAAGA | + |
|
Preference number: 4 (lower is better) Translates to: EVNGPLGLWTFWLYGLCCFAHFR*RVGTVR Trigger: TCTTACAGTCCCAACCCTCCAACGGAAATGGGCGAA...ACAGCAGAGGCCATATAACCAAAAAGTCCAAAGGCCCAGGGGACCATTTACTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154677.8 |
||
| CDS-3UTR TCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGTCTATCCCGACTGCGTaGGCGGCTTCGTCTCCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLSIPTA*AASSPF Trigger: GAAAGGAGACGAAGCCGCTCACGCAGTCGGGATAGA...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR TCA 90 bp | TATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCATTCTATCCCGACTGCGTaGGCGGCTTCGTCTCCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: YFEIPFLPNNQDQMPSSHSIPTA*AASSPF Trigger: GAAAGGAGACGAAGCCGCTCACGCAGTCGGGATAGA...ATGGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| 3UTR CAA 72 bp | CAAGGAGATGGAGAGCTTTCCAAGGAGGCAGAAACTTaGTCTAACAAAGTTCTTGTGAGGATGACTGAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: QGDGELSKEAET*SNKVLVRMTEV Trigger: TACCTCAGTCATCCTCACAAGAACTTTGTTAGACAAAGTTTCTGCCTCCTTGGAAAGCTCTCCATCTCCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147098.8 |
||
| CDS-3UTR TCA 90 bp | CATAAATTCCATCCTAATAGTCAAATCCTGTTACAACTTAAATGGGACTTTCCCGACCGATGCCATTCCTaGGATCTTCGCCCATTTCCG | + |
|
Preference number: 4 (lower is better) Translates to: HKFHPNSQILLQLKWDFPDRCHS*DLRPFP Trigger: CGGAAATGGGCGAAGATCTCAGGAATGGCATCGGTC...GGGAAAGTCCCATTTAAGTTGTAACAGGATTTGACTATTAGGATGGAATTTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154677.8 |
||
| CDS-3UTR TCA 90 bp | CAAATCCTGTTACAACTTAAATGGGACTTTCCCAAGTCTTTAGTGGCAGTGGAAACTATCGATTTCCTGTaGCCGATGCCATTCCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: QILLQLKWDFPKSLVAVETIDFL*PMPFLR Trigger: TCTCAGGAATGGCATCGGTCACAGGAAATCGATAGT...TTCCACTGCCACTAAAGACTTGGGAAAGTCCCATTTAAGTTGTAACAGGATTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154677.8 |
||
| CDS-3UTR GCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGCGGTCGAATTCTTGCTaGCAGTTGCATGCAGAAAAC | + |
|
Preference number: 4 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLRSNSC*QLHAEN Trigger: GTTTTCTGCATGCAACTGGCAGCAAGAATTCGACCG...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGTCTCGGTCGAATTCTTaGTGCCAGTTGCATGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLSRSNS*CQLHAE Trigger: TTCTGCATGCAACTGGCAGCAAGAATTCGACCGAGA...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGTCGTGTTTGCAAATCTaGCACAGCACCAAATGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLSCLQI*HSTKCQ Trigger: CTGGCATTTGGTGCTGTGGCAGATTTGCAAACACGA...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029149.13 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGTGGGAAAGTCGTGTTTaGAAATCTGCCACAGCACCA | + |
|
Preference number: 4 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLWESRV*KSATAP Trigger: TGGTGCTGTGGCAGATTTGCAAACACGACTTTCCCA...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029149.13 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR TCA 90 bp | CATCCTAATAGTCAAATCCTGTTACAACTTAAATGGGACTTTCCCAAGTCTTTAGGGACTGTAAGAGCTTaGTGCCACCTCTGTCACACA | + |
|
Preference number: 4 (lower is better) Translates to: HPNSQILLQLKWDFPKSLGTVRA*CHLCHT Trigger: TGTGTGACAGAGGTGGCATCAAGCTCTTACAGTCCC...TAAAGACTTGGGAAAGTCCCATTTAAGTTGTAACAGGATTTGACTATTAGGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154677.8 |
||
| CDS-3UTR GCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGTTGCTGCCAGTTGCATaGAGAAAACAGTCCTTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLLLPVA*RKQSLH Trigger: ATGCAAGGACTGTTTTCTGCATGCAACTGGCAGCAA...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACACGGTCGAATTCTTGCTaGCAGTTGCATGCAGAAAAC | + |
|
Preference number: 4 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTRSNSC*QLHAEN Trigger: GTTTTCTGCATGCAACTGGCAGCAAGAATTCGACCG...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACATGGGAAAGTCGTGTTTaGAAATCTGCCACAGCACCA | + |
|
Preference number: 4 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTWESRV*KSATAP Trigger: TGGTGCTGTGGCAGATTTGCAAACACGACTTTCCCA...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029149.13 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR CCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGGGCACTGTTAAATTTTaGTCCGGAGTAGGGACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLGTVKF*SGVGTS Trigger: AGAAGTCCCTACTCCGGACCAAAATTTAACAGTGCC...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR CCA 90 bp | AAATGGGACTTTCCCAAGTCTTTAGTGGCAGTGGAATTTTGTACTGAACATCATTTTCCGTTGGAGGGTTaGGACTGTAAGAGCTTGATG | + |
|
Preference number: 4 (lower is better) Translates to: KWDFPKSLVAVEFCTEHHFPLEG*DCKSLM Trigger: CATCAAGCTCTTACAGTCCCAACCCTCCAACGGAAA...ATGATGTTCAGTACAAAATTCCACTGCCACTAAAGACTTGGGAAAGTCCCATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154677.8 |
||
| CDS-3UTR GCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGTTCGTCTCCTTTCTTTaGTTCTACTTCGTTTCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLFVSFL*FYFVSA Trigger: AGCGGAAACGAAGTAGAAGCAAAGAAAGGAGACGAA...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACATTGCTGCCAGTTGCATaGAGAAAACAGTCCTTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTLLPVA*RKQSLH Trigger: ATGCAAGGACTGTTTTCTGCATGCAACTGGCAGCAA...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGAACAAAAGAGAATTCTaGCACAGCACCAAATGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLNKREF*HSTKCQ Trigger: CTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTT...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109587.9 |
||
| CDS-3UTR CCA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACAGGCACTGTTAAATTTTaGTCCGGAGTAGGGACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTGTVKF*SGVGTS Trigger: AGAAGTCCCTACTCCGGACCAAAATTTAACAGTGCC...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR TCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGGTCTTCTGCTTAATTTaGTGCTATGAGGCAATCCAA | + |
|
Preference number: 4 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLVFCLI*CYEAIQ Trigger: TTGGATTGCCTCATAGCATCAAATTAAGCAGAAGAC...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACATTCGTCTCCTTTCTTTaGTTCTACTTCGTTTCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTFVSFL*FYFVSA Trigger: AGCGGAAACGAAGTAGAAGCAAAGAAAGGAGACGAA...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCCGGTCGAATTCTTGCTaGCAGTTGCATGCAGAAAAC | + |
|
Preference number: 4 (lower is better) Translates to: IILKSHSCQIIKIKCQAARSNSC*QLHAEN Trigger: GTTTTCTGCATGCAACTGGCAGCAAGAATTCGACCG...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCTCTCGGTCGAATTCTTaGTGCCAGTTGCATGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: IILKSHSCQIIKIKCQAASRSNS*CQLHAE Trigger: TTCTGCATGCAACTGGCAGCAAGAATTCGACCGAGA...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCTCGTGTTTGCAAATCTaGCACAGCACCAAATGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: IILKSHSCQIIKIKCQAASCLQI*HSTKCQ Trigger: CTGGCATTTGGTGCTGTGGCAGATTTGCAAACACGA...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029149.13 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR TCA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACAGTCTTCTGCTTAATTTaGTGCTATGAGGCAATCCAA | + |
|
Preference number: 4 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTVFCLI*CYEAIQ Trigger: TTGGATTGCCTCATAGCATCAAATTAAGCAGAAGAC...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR TCA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCGTGATGCCTGAACTATaGTTGGCACTCCTAAAACTC | + |
|
Preference number: 4 (lower is better) Translates to: IILKSHSCQIIKIKCQAAVMPEL*LALLKL Trigger: GAGTTTTAGGAGTGCCAATCATAGTTCAGGCATCAC...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR TCA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGACATACACATTGCCCTaGGCTGAATTTTTATCAACA | + |
|
Preference number: 4 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLTYTLP*AEFLST Trigger: TGTTGATAAAAATTCAGCTCAGGGCAATGTGTATGT...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCTTGGAAACACTGTGTTaGAAGAGGTTGAACAGACGC | + |
|
Preference number: 4 (lower is better) Translates to: IILKSHSCQIIKIKCQAALETLC*KRLNRR Trigger: GCGTCTGTTCAACCTCTTGCAACACAGTGTTTCCAA...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000146297.8 |
||
| CDS-3UTR CCA 90 bp | TATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCATGGCACTGTTAAATTTTaGTCCGGAGTAGGGACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: YFEIPFLPNNQDQMPSSHGTVKF*SGVGTS Trigger: AGAAGTCCCTACTCCGGACCAAAATTTAACAGTGCC...ATGGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCTTCGTCTCCTTTCTTTaGTTCTACTTCGTTTCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: IILKSHSCQIIKIKCQAAFVSFL*FYFVSA Trigger: AGCGGAAACGAAGTAGAAGCAAAGAAAGGAGACGAA...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
||
| CDS-3UTR GCA 90 bp | TATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCATATTCTTGCTGCCAGTTaGATGCAGAAAACAGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: YFEIPFLPNNQDQMPSSHILAAS*MQKTVL Trigger: AAGGACTGTTTTCTGCATGCAACTGGCAGCAAGAAT...ATGGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| CDS-3UTR GCA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCATTCTTGCTGCCAGTTaGATGCAGAAAACAGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: IILKSHSCQIIKIKCQAAILAAS*MQKTVL Trigger: AAGGACTGTTTTCTGCATGCAACTGGCAGCAAGAAT...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| CDS-3UTR GCA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCACTTCACATACACATTaGCCTGAGCTGAATTTTTAT | + |
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Preference number: 4 (lower is better) Translates to: IILKSHSCQIIKIKCQAATSHTH*PELNFY Trigger: ATAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGT...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000146297.8 |
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| CDS TCA 90 bp | GAGATCTTCGCCCATTTCCGTTGGAGGGTTGGGACTGTAAGAGCTTaGTGCCACCTCTGTCACACATCTCGCCCTTCTTGTAAGGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: EIFAHFRWRVGTVRA*CHLCHTSRPSCKGP Trigger: AGGCCCCTTACAAGAAGGGCGAGATGTGTGACAGAGGTGGCATCAAGCTCTTACAGTCCCAACCCTCCAACGGAAATGGGCGAAGATCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154677.8 |
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| CDS-3UTR CAA 90 bp | GTTGGAAACACTGTGTTGCAAGAGGTTGAACAGACGCAGCTGCAGCTAAAGCTGCTCTCGGTCGAATTCTaGCTGCCAGTTGCATGCAGA | + |
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Preference number: 5 (lower is better) Translates to: VGNTVLQEVEQTQLQLKLLSVEF*LPVACR Trigger: TCTGCATGCAACTGGCAGCAAGAATTCGACCGAGAG...CAGCTTTAGCTGCAGCTGCGTCTGTTCAACCTCTTGCAACACAGTGTTTCCAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142071.8 |
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| CDS-3UTR CAA 90 bp | GTCCCCTGGGCCTTTGGACTTTTTGGTTATATGGCCTCTGCTGTAAAGGTGTTTCTTCGCCCATTTCCGTaGGAGGGTTGGGACTGTAAG | + |
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Preference number: 5 (lower is better) Translates to: VPWAFGLFGYMASAVKVFLRPFP*EGWDCK Trigger: CTTACAGTCCCAACCCTCCAACGGAAATGGGCGAAG...AAACACCTTTACAGCAGAGGCCATATAACCAAAAAGTCCAAAGGCCCAGGGGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154677.8 |
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| CDS-3UTR CAA 90 bp | CGGAATCTTCTATCCCGACTGCGTGAGCGGCTTCGTCTCCTTTCTTTGCTTCTACAGAAACTTTGTTTTTaGCTACGTTCTTCATGGCCG | + |
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Preference number: 5 (lower is better) Translates to: RNLLSRLRERLRLLSLLLQKLCF*LRSSWP Trigger: CGGCCATGAAGAACGTAGCAAAAAACAAAGTTTCTG...TAGAAGCAAAGAAAGGAGACGAAGCCGCTCACGCAGTCGGGATAGAAGATTCCG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153514.8 |
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| CDS-3UTR CAA 90 bp | ATCATTGAAGTAAATGGTCCCCTGGGCCTTTGGACTTTTTGGTTATATGGCCTCTGGGACTGTAAGAGCTaGATGCCACCTCTGTCACAC | + |
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Preference number: 5 (lower is better) Translates to: IIEVNGPLGLWTFWLYGLWDCKS*MPPLSH Trigger: GTGTGACAGAGGTGGCATCAAGCTCTTACAGTCCCA...GAGGCCATATAACCAAAAAGTCCAAAGGCCCAGGGGACCATTTACTTCAATGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154677.8 |
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| CDS-3UTR CAA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGCTCTCGGTCGAATTCTaGCTGCCAGTTGCATGCAGA | + |
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Preference number: 5 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLLSVEF*LPVACR Trigger: TCTGCATGCAACTGGCAGCAAGAATTCGACCGAGAG...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| CDS-3UTR CAA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACACTCTCGGTCGAATTCTaGCTGCCAGTTGCATGCAGA | + |
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Preference number: 5 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTLSVEF*LPVACR Trigger: TCTGCATGCAACTGGCAGCAAGAATTCGACCGAGAG...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| CDS-3UTR CAA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGTTGGGAAAGTCGTGTTaGCAAATCTGCCACAGCACC | + |
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Preference number: 5 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLLGKSC*QICHST Trigger: GGTGCTGTGGCAGATTTGCAAACACGACTTTCCCAA...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029149.13 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| CDS-3UTR CAA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGACTGAAGACGTCCAGTaGTTCCCAAGTCAATTCCAG | + |
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Preference number: 5 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLTEDVQ*FPSQFQ Trigger: CTGGAATTGACTTGGGAACAACTGGACGTCTTCAGT...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| CDS-3UTR CAA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACATTGGGAAAGTCGTGTTaGCAAATCTGCCACAGCACC | + |
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Preference number: 5 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTLGKSC*QICHST Trigger: GGTGCTGTGGCAGATTTGCAAACACGACTTTCCCAA...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029149.13 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| CDS-3UTR CAA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCCTGTGTTGCAAGAGGTaGAACAGACGCAGCTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: IILKSHSCQIIKIKCQAALCCKR*NRRSCS Trigger: GCTGCAGCTGCGTCTGTTCAACCTCTTGCAACACAG...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000146297.8 |
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| CDS-3UTR CAA 90 bp | ATTATTTTGAAATCCCATTCTTGCCAAATAATCAAGATCAAATGCCAAGCAGCCCTCTCGGTCGAATTCTaGCTGCCAGTTGCATGCAGA | + |
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Preference number: 5 (lower is better) Translates to: IILKSHSCQIIKIKCQAALSVEF*LPVACR Trigger: TCTGCATGCAACTGGCAGCAAGAATTCGACCGAGAG...GGCTGCTTGGCATTTGATCTTGATTATTTGGCAAGAATGGGATTTCAAAATAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| CDS-3UTR CAA 90 bp | CAAATAATCAAGATCAAATGCCAAGCAGCCATACAGCCACTTAGACTTTTCACAACTGAAGACGTCCAGTaGTTCCCAAGTCAATTCCAG | + |
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Preference number: 5 (lower is better) Translates to: QIIKIKCQAAIQPLRLFTTEDVQ*FPSQFQ Trigger: CTGGAATTGACTTGGGAACAACTGGACGTCTTCAGT...TGTGAAAAGTCTAAGTGGCTGTATGGCTGCTTGGCATTTGATCTTGATTATTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| CDS-3UTR CAA 90 bp | CCATACAGCCACTTAGACTTTTCACACACTAAATGTGGATTCTGGAAACCTTTGCCTTTTGTAAATTGTTaGCCATTGCAGCAGCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: PYSHLDFSHTKCGFWKPLPFVNC*PLQQLC Trigger: ACAGAGCTGCTGCAATGGCAAACAATTTACAAAAGG...CAAAGGTTTCCAGAATCCACATTTAGTGTGTGAAAAGTCTAAGTGGCTGTATGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029149.13 ENSMUST00000109587.9 ENSMUST00000142071.8 ENSMUST00000146297.8 |
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| CDS CAA 72 bp | CGCCCATTTCCGTTGGAGGGTTGGGACTGTAAGAGCTaGATGCCACCTCTGTCACACATCTCGCCCTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: RPFPLEGWDCKS*MPPLSHISPFL Trigger: CAAGAAGGGCGAGATGTGTGACAGAGGTGGCATCAAGCTCTTACAGTCCCAACCCTCCAACGGAAATGGGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154677.8 |
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| CDS TCA 72 bp | GCCCATTTCCGTTGGAGGGTTGGGACTGTAAGAGCTTaGTGCCACCTCTGTCACACATCTCGCCCTTCTTGT | + |
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Preference number: 6 (lower is better) Translates to: AHFRWRVGTVRA*CHLCHTSRPSC Trigger: ACAAGAAGGGCGAGATGTGTGACAGAGGTGGCATCAAGCTCTTACAGTCCCAACCCTCCAACGGAAATGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154677.8 |
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