Pregenerated sensors for RBM3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031167Ensembl transcript IDs: ENSMUST00000040010.10, ENSMUST00000115615.9, ENSMUST00000115616.8, ENSMUST00000115617.10, ENSMUST00000115619.8, ENSMUST00000115621.9, ENSMUST00000129947.9, ENSMUST00000141629.2
Found 116 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGACTCACGAGGTCCTCTCCGGTCCTCTGCCAGGCCCACAGCTCTaGAGACTCTACTACCTAAGCCCAGAGCAGGTCAACCATCCACAG | + |
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Preference number: 1 (lower is better) Translates to: QTHEVLSGPLPGPQL*RLYYLSPEQVNHPQ Trigger: CTGTGGATGGTTGACCTGCTCTGGGCTTAGGTAGTAGAGTCTGCAGAGCTGTGGGCCTGGCAGAGGACCGGAGAGGACCTCGTGAGTCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
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| 3UTR GCA 90 bp | ACGCCCACCAAAGGCACCCCCTCTGGATCCCCTGGCAGACTTTCCTaGATGATCAACTCGGATTTGGCGCCCATCCAGGGAATCTTGACT | + |
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Preference number: 1 (lower is better) Translates to: TPTKGTPSGSPGRLS*MINSDLAPIQGILT Trigger: AGTCAAGATTCCCTGGATGGGCGCCAAATCCGAGTTGATCATGCAGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGCCTTTGGTGGGCGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
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| 3UTR CCA 90 bp | CTGGTAGGCTTAGCCCCAGTGCCCCATAACCTGGGCCTGGCTCATTaGTTGAGGCAGTATTCTGGGAAGTTCCTGAGTCTTCATCCACCT | + |
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Preference number: 1 (lower is better) Translates to: LVGLAPVPHNLGLAH*LRQYSGKFLSLHPP Trigger: AGGTGGATGAAGACTCAGGAACTTCCCAGAATACTGCCTCAACCAATGAGCCAGGCCCAGGTTATGGGGCACTGGGGCTAAGCCTACCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115619.8 |
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| 3UTR CCA 90 bp | CTGGTAGGCTTAGCCCCAGTGCCCCATAACCTGGGCCTGGCTCATTaGTTGAGGCAGTATTCTGGGAAGTTCCTGAGTCTTCATCCACAT | + |
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Preference number: 1 (lower is better) Translates to: LVGLAPVPHNLGLAH*LRQYSGKFLSLHPH Trigger: ATGTGGATGAAGACTCAGGAACTTCCCAGAATACTGCCTCAACCAATGAGCCAGGCCCAGGTTATGGGGCACTGGGGCTAAGCCTACCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR GCA 90 bp | TCCAAGCTGGGCTGCAGAGATGGCTCAGAAGTTAAGAGTACTGACTaGTCTTCTAGAGGTCCTGAGTTCAACTCCCAGCAACCACATGGT | + |
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Preference number: 1 (lower is better) Translates to: SKLGCRDGSEVKSTD*SSRGPEFNSQQPHG Trigger: ACCATGTGGTTGCTGGGAGTTGAACTCAGGACCTCTAGAAGAGCAGTCAGTACTCTTAACTTCTGAGCCATCTCTGCAGCCCAGCTTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR CCA 90 bp | CTGCCTATGGTGTCCGCTGTTGTGGCTCTACCTTTAATCTCTCACTaGGTGTTTGGGGAGCTTTGGACCTCAAATTTGAGTTTTACTAAT | + |
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Preference number: 1 (lower is better) Translates to: LPMVSAVVALPLISH*VFGELWTSNLSFTN Trigger: ATTAGTAAAACTCAAATTTGAGGTCCAAAGCTCCCCAAACACCCAGTGAGAGATTAAAGGTAGAGCCACAACAGCGGACACCATAGGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR CCA 90 bp | GTTGTGGCTCTACCTTTAATCTCTCACTGGGTGTTTGGGGAGCTTTaGACCTCAAATTTGAGTTTTACTAATGTCTGCATGACCATAAAG | + |
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Preference number: 1 (lower is better) Translates to: VVALPLISHWVFGEL*TSNLSFTNVCMTIK Trigger: CTTTATGGTCATGCAGACATTAGTAAAACTCAAATTTGAGGTCCAAAGCTCCCCAAACACCCAGTGAGAGATTAAAGGTAGAGCCACAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR CCA 90 bp | GATTGGTTGATAGCACATATCCTGTATGCCTTTCAATGCAAAATGTaGCCTAAGTGTGTCGCTGCATTATTTAGGGACTTAATCCATTTT | + |
|
Preference number: 1 (lower is better) Translates to: DWLIAHILYAFQCKM*PKCVAALFRDLIHF Trigger: AAAATGGATTAAGTCCCTAAATAATGCAGCGACACACTTAGGCCACATTTTGCATTGAAAGGCATACAGGATATGTGCTATCAACCAATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR GCA 90 bp | CCCATCCAGGGAATCTTGACTGAACTCAGGCTGACGTATCCTCCCCACTCCTCTCCAGGCCCACAGCTCTaGAGACTCTACTACCTAAGC | + |
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Preference number: 2 (lower is better) Translates to: PIQGILTELRLTYPPHSSPGPQL*RLYYLS Trigger: GCTTAGGTAGTAGAGTCTGCAGAGCTGTGGGCCTGG...AGAGGAGTGGGGAGGATACGTCAGCCTGAGTTCAGTCAAGATTCCCTGGATGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
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| 3UTR-3UTR CCA 90 bp | CTGCGACCACGCCCACCAAAGGCACCCCCTCTGGATCCCCTGGCAGACTTTCCTTTGCAAGGACGATCCTaGATCAGAAGTGTTATTCCT | + |
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Preference number: 2 (lower is better) Translates to: LRPRPPKAPPLDPLADFPLQGRS*IRSVIP Trigger: AGGAATAACACTTCTGATCCAGGATCGTCCTTGCAA...AGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGCCTTTGGTGGGCGTGGTCGCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000129947.9 |
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| 3UTR CAA 90 bp | GTAGGCTTAGCCCCAGTGCCCCATAACCTGGGCCTGGCTCATTGGTaGAGGCAGTATTCTGGGAAGTTCCTGAGTCTTCATCCACCTACA | + |
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Preference number: 2 (lower is better) Translates to: VGLAPVPHNLGLAHW*RQYSGKFLSLHPPT Trigger: TGTAGGTGGATGAAGACTCAGGAACTTCCCAGAATACTGCCTCAACCAATGAGCCAGGCCCAGGTTATGGGGCACTGGGGCTAAGCCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115619.8 |
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| 3UTR-3UTR GCA 90 bp | CACCCAAGTGGCTGGGTTAGGCATCAAGGCAGCAGAGATAAAGGGCAGTGTGGCAACAGGTTGACGCAATaGCAATCTTCAGGTCTCACC | + |
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Preference number: 2 (lower is better) Translates to: HPSGWVRHQGSRDKGQCGNRLTQ*QSSGLT Trigger: GGTGAGACCTGAAGATTGGCATTGCGTCAACCTGTT...GCCACACTGCCCTTTATCTCTGCTGCCTTGATGCCTAACCCAGCCACTTGGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141629.2 |
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| 3UTR CAA 90 bp | GTAGGCTTAGCCCCAGTGCCCCATAACCTGGGCCTGGCTCATTGGTaGAGGCAGTATTCTGGGAAGTTCCTGAGTCTTCATCCACATTTT | + |
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Preference number: 2 (lower is better) Translates to: VGLAPVPHNLGLAHW*RQYSGKFLSLHPHF Trigger: AAAATGTGGATGAAGACTCAGGAACTTCCCAGAATACTGCCTCAACCAATGAGCCAGGCCCAGGTTATGGGGCACTGGGGCTAAGCCTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR GCA 90 bp | CGCAATGCCAATCTTCAGGTCTCACCTACATTTTGTGTGCATGCCCCATCTCAGCCCACTCCTCTAAGCTaGCCGACTATTAGGGCTAGA | + |
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Preference number: 2 (lower is better) Translates to: RNANLQVSPTFCVHAPSQPTPLS*PTIRAR Trigger: TCTAGCCCTAATAGTCGGGCAGCTTAGAGGAGTGGG...CTGAGATGGGGCATGCACACAAAATGTAGGTGAGACCTGAAGATTGGCATTGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000141629.2 |
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| 3UTR-3UTR GCA 90 bp | AGCACCCAAGTGGCTGGGTTAGGCATCAAGGCAGCAGAGATAAAGGGCAGTGTGCACCTACATTTTGTGTaGATGCCCCATCTCAGTTGT | + |
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Preference number: 2 (lower is better) Translates to: STQVAGLGIKAAEIKGSVHLHFV*MPHLSC Trigger: ACAACTGAGATGGGGCATGCACACAAAATGTAGGTG...CACACTGCCCTTTATCTCTGCTGCCTTGATGCCTAACCCAGCCACTTGGGTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000141629.2 |
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| 3UTR-3UTR TCA 90 bp | GCCTTTCAATGCAAAATGTGGCCTAAGTGTGTCGCTGCATTATTTAGGGACTTACTTCCTCCCCACCCCTaGCCTACCTTTAGGGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: AFQCKMWPKCVAALFRDLLPPHP*PTFRAA Trigger: TGCTGCCCTAAAGGTAGGTCAGGGGTGGGGAGGAAG...TAAGTCCCTAAATAATGCAGCGACACACTTAGGCCACATTTTGCATTGAAAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR TCA 90 bp | AACTCTTGTCATTTTGTGGTTGATGATGAACTACCACCTCAAGTGACACTGGCTCTTCCTCCCCACCCCTaGCCTACCTTTAGGGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: NSCHFVVDDELPPQVTLALPPHP*PTFRAA Trigger: TGCTGCCCTAAAGGTAGGTCAGGGGTGGGGAGGAAG...AGCCAGTGTCACTTGAGGTGGTAGTTCATCATCAACCACAAAATGACAAGAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| 3UTR-3UTR CCA 90 bp | CATGCAGCAAGCCCAAGGACATCGCAATCCTTTAATTGTAGCACTAAGGTGATCCTGGGCCTGGCTCATTaGTTGAGGCAGTATTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: HAASPRTSQSFNCSTKVILGLAH*LRQYSG Trigger: CCCAGAATACTGCCTCAACCAATGAGCCAGGCCCAG...GATCACCTTAGTGCTACAATTAAAGGATTGCGATGTCCTTGGGCTTGCTGCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR CCA 90 bp | GACTGCTCTTCTAGAGGTCCTGAGTTCAACTCCCAGCAACCACATGGTGGCTCACACGATGCCCTCTTCTaGTTTGAAGATGACAGTGTA | + |
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Preference number: 2 (lower is better) Translates to: DCSSRGPEFNSQQPHGGSHDALF*FEDDSV Trigger: TACACTGTCATCTTCAAACCAGAAGAGGGCATCGTG...TGAGCCACCATGTGGTTGCTGGGAGTTGAACTCAGGACCTCTAGAAGAGCAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR GCA 90 bp | TTTGTGGTTGATGATGAACTACCACCTCAAGTGACACTGGCTTTCCTTCCTCCCAGGCCCAGCATAGAATaGTTCCTTCCTCTGACCAAG | + |
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Preference number: 2 (lower is better) Translates to: FVVDDELPPQVTLAFLPPRPSIE*FLPLTK Trigger: CTTGGTCAGAGGAAGGAAGCATTCTATGCTGGGCCT...GGGAGGAAGGAAAGCCAGTGTCACTTGAGGTGGTAGTTCATCATCAACCACAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| 3UTR-3UTR GCA 90 bp | AACTCTTGTCATTTTGTGGTTGATGATGAACTACCACCTCAAGTGACACTGGCTGGCAGCATGTGGTTCTaGCAGTTCCCCAAAGGCCCA | + |
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Preference number: 2 (lower is better) Translates to: NSCHFVVDDELPPQVTLAGSMWF*QFPKGP Trigger: TGGGCCTTTGGGGAACTGGCAGAACCACATGCTGCC...AGCCAGTGTCACTTGAGGTGGTAGTTCATCATCAACCACAAAATGACAAGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| 3UTR-3UTR CCA 90 bp | TGTTGTGGCTCTACCTTTAATCTCTCACTGGGTGTTTGGGGAGCTTTGGACCTCGTTGAGGCAGTATTCTaGGAAGTTCCTGAGTCTTCA | + |
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Preference number: 2 (lower is better) Translates to: CCGSTFNLSLGVWGALDLVEAVF*EVPESS Trigger: TGAAGACTCAGGAACTTCCCAGAATACTGCCTCAAC...GAGGTCCAAAGCTCCCCAAACACCCAGTGAGAGATTAAAGGTAGAGCCACAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR TCA 90 bp | TTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGATAAAACACCTCTCTCGGTCTaGGGCTTCAGAGTCCATCCC | + |
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Preference number: 2 (lower is better) Translates to: LTRIVHRYIQKSLSGHDKTPLSV*GFRVHP Trigger: GGGATGGACTCTGAAGCCTCAGACCGAGAGAGGTGT...TTTATCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129947.9 |
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| 3UTR-3UTR GCA 90 bp | AACTCTTGTCATTTTGTGGTTGATGATGAACTACCACCTCAAGTGACACTGGCTAGGCCCAGCATAGAATaGTTCCTTCCTCTGACCAAG | + |
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Preference number: 2 (lower is better) Translates to: NSCHFVVDDELPPQVTLARPSIE*FLPLTK Trigger: CTTGGTCAGAGGAAGGAAGCATTCTATGCTGGGCCT...AGCCAGTGTCACTTGAGGTGGTAGTTCATCATCAACCACAAAATGACAAGAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| 3UTR-3UTR GCA 90 bp | GACTGCTCTTCTAGAGGTCCTGAGTTCAACTCCCAGCAACCACATGGTGGCTCAAGTTTTACTAATGTCTaGATGACCATAAAGCTTTGC | + |
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Preference number: 2 (lower is better) Translates to: DCSSRGPEFNSQQPHGGSSFTNV*MTIKLC Trigger: GCAAAGCTTTATGGTCATGCAGACATTAGTAAAACT...TGAGCCACCATGTGGTTGCTGGGAGTTGAACTCAGGACCTCTAGAAGAGCAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR CCA 90 bp | GCCCTTTCCCTGGCAATAATTAGCACCAAGGCAAAGCTAATTATTACAATATACCTGGGCCTGGCTCATTaGTTGAGGCAGTATTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: ALSLAIISTKAKLIITIYLGLAH*LRQYSG Trigger: CCCAGAATACTGCCTCAACCAATGAGCCAGGCCCAG...GTATATTGTAATAATTAGCTTTGCCTTGGTGCTAATTATTGCCAGGGAAAGGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| 3UTR-3UTR CCA 90 bp | TCTGTAATGGGATACACGATGCCCTCTTCTGGTTTGAAGATGACAGTGTACTCACCTTTAATCTCTCACTaGGTGTTTGGGGAGCTTTGG | + |
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Preference number: 2 (lower is better) Translates to: SVMGYTMPSSGLKMTVYSPLISH*VFGELW Trigger: CCAAAGCTCCCCAAACACCCAGTGAGAGATTAAAGG...TGAGTACACTGTCATCTTCAAACCAGAAGAGGGCATCGTGTATCCCATTACAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR TCA 90 bp | CAATGCAAAATGTGGCCTAAGTGTGTCGCTGCATTATTTAGGGACTTAATCCATACAGGGCCTAAAACCTaGGTTTTGGAGGCTGGAGTA | + |
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Preference number: 2 (lower is better) Translates to: QCKMWPKCVAALFRDLIHTGPKT*VLEAGV Trigger: TACTCCAGCCTCCAAAACTCAGGTTTTAGGCCCTGT...ATGGATTAAGTCCCTAAATAATGCAGCGACACACTTAGGCCACATTTTGCATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR CCA 90 bp | GCTGAGAAGGTGGTAGGAAGTTTGCAATATCAGGATACTGGTTTTCACATGCCCACTCTTGTCATTTTGTaGTTGATGATGAACTACCAC | + |
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Preference number: 2 (lower is better) Translates to: AEKVVGSLQYQDTGFHMPTLVIL*LMMNYH Trigger: GTGGTAGTTCATCATCAACCACAAAATGACAAGAGT...GGGCATGTGAAAACCAGTATCCTGATATTGCAAACTTCCTACCACCTTCTCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR CCA 90 bp | CTGTATGCCTTTCAATGCAAAATGTGGCCTAAGTGTGTCGCTGCATTATTTAGGAAAACTGAGAAAGCCTaGAAACAGGGCCTAAAACCT | + |
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Preference number: 2 (lower is better) Translates to: LYAFQCKMWPKCVAALFRKTEKA*KQGLKP Trigger: AGGTTTTAGGCCCTGTTTCCAGGCTTTCTCAGTTTT...CCTAAATAATGCAGCGACACACTTAGGCCACATTTTGCATTGAAAGGCATACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR CCA 90 bp | GCCCTTTCCCTGGCAATAATTAGCACCAAGGCAAAGCTAATTATTACAATATACGTTGAGGCAGTATTCTaGGAAGTTCCTGAGTCTTCA | + |
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Preference number: 2 (lower is better) Translates to: ALSLAIISTKAKLIITIYVEAVF*EVPESS Trigger: TGAAGACTCAGGAACTTCCCAGAATACTGCCTCAAC...GTATATTGTAATAATTAGCTTTGCCTTGGTGCTAATTATTGCCAGGGAAAGGGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| 3UTR-3UTR CCA 90 bp | TCTGTAATGGGATACACGATGCCCTCTTCTGGTTTGAAGATGACAGTGTACTCAGCAATATCAGGATACTaGTTTTCACATGCCCTAATT | + |
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Preference number: 2 (lower is better) Translates to: SVMGYTMPSSGLKMTVYSAISGY*FSHALI Trigger: AATTAGGGCATGTGAAAACCAGTATCCTGATATTGC...TGAGTACACTGTCATCTTCAAACCAGAAGAGGGCATCGTGTATCCCATTACAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR CCA 90 bp | CAATATGGACTCAAGTACTTGGAGAGTGGAAGACAGTCTGTGCTATATAAGTTCCTAAAACCTGAGTTTTaGAGGCTGGAGTATATCTTG | + |
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Preference number: 2 (lower is better) Translates to: QYGLKYLESGRQSVLYKFLKPEF*RLEYIL Trigger: CAAGATATACTCCAGCCTCCAAAACTCAGGTTTTAG...GAACTTATATAGCACAGACTGTCTTCCACTCTCCAAGTACTTGAGTCCATATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR CCA 90 bp | ATGATCTTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATTTGCAAGGACGATCCTaGATCAGAAGTGTTATTCCT | + |
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Preference number: 2 (lower is better) Translates to: MILTRIVHRYIQKSLSGHLQGRS*IRSVIP Trigger: AGGAATAACACTTCTGATCCAGGATCGTCCTTGCAA...ATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAAGATCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| 3UTR-3UTR CCA 90 bp | TCAAGTACTTGGAGAGTGGAAGACAGTCTGTGCTATATAAGTTCCCATCTAAAACCCAGTGGGTTAAACTaGAGACAAATGTTATCCTTT | + |
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Preference number: 2 (lower is better) Translates to: SSTWRVEDSLCYISSHLKPSGLN*RQMLSF Trigger: AAAGGATAACATTTGTCTCCAGTTTAACCCACTGGG...TTTTAGATGGGAACTTATATAGCACAGACTGTCTTCCACTCTCCAAGTACTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR CCA 90 bp | TTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGATAAATTGCAAGGACGATCCTaGATCAGAAGTGTTATTCCT | + |
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Preference number: 2 (lower is better) Translates to: LTRIVHRYIQKSLSGHDKLQGRS*IRSVIP Trigger: AGGAATAACACTTCTGATCCAGGATCGTCCTTGCAA...TTTATCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| 3UTR GCA 72 bp | GAGGTCCTCTCCGGTCCTCTGCCAGGCCCACAGCTCTaGAGACTCTACTACCTAAGCCCAGAGCAGGTCAAC | + |
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Preference number: 3 (lower is better) Translates to: EVLSGPLPGPQL*RLYYLSPEQVN Trigger: GTTGACCTGCTCTGGGCTTAGGTAGTAGAGTCTGCAGAGCTGTGGGCCTGGCAGAGGACCGGAGAGGACCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
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| 3UTR TCA 72 bp | GCACCCCCTCTGGATCCCCTGGCAGACTTTCCTGCATaGTCAACTCGGATTTGGCGCCCATCCAGGGAATCT | + |
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Preference number: 3 (lower is better) Translates to: APPLDPLADFPA*STRIWRPSRES Trigger: AGATTCCCTGGATGGGCGCCAAATCCGAGTTGATCATGCAGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
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| 3UTR GCA 72 bp | AAAGGCACCCCCTCTGGATCCCCTGGCAGACTTTCCTaGATGATCAACTCGGATTTGGCGCCCATCCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: KGTPSGSPGRLS*MINSDLAPIQG Trigger: TCCCTGGATGGGCGCCAAATCCGAGTTGATCATGCAGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGCCTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
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| 3UTR-3UTR CAA 90 bp | CAAAGGCCCAGCATAGAATGCTTCCTTCCTCTGACCAAGTACCCACCTGGTAGGGGCCTGGCTCATTGGTaGAGGCAGTATTCTGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: QRPSIECFLPLTKYPPGRGLAHW*RQYSGK Trigger: CTTCCCAGAATACTGCCTCAACCAATGAGCCAGGCC...CCTACCAGGTGGGTACTTGGTCAGAGGAAGGAAGCATTCTATGCTGGGCCTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| 3UTR CCA 72 bp | TGTCTGCATGACCATAAAGCTTTGCAGTGGACCTCCTaGGCCCTTTCCCTGGCAATAATTAGCACCAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: CLHDHKALQWTS*ALSLAIISTKA Trigger: TGCCTTGGTGCTAATTATTGCCAGGGAAAGGGCCCAGGAGGTCCACTGCAAAGCTTTATGGTCATGCAGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR GCA 72 bp | GGCTGCAGAGATGGCTCAGAAGTTAAGAGTACTGACTaGTCTTCTAGAGGTCCTGAGTTCAACTCCCAGCAA | + |
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Preference number: 3 (lower is better) Translates to: GCRDGSEVKSTD*SSRGPEFNSQQ Trigger: TTGCTGGGAGTTGAACTCAGGACCTCTAGAAGAGCAGTCAGTACTCTTAACTTCTGAGCCATCTCTGCAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR CAA 90 bp | AACTCTTGTCATTTTGTGGTTGATGATGAACTACCACCTCAAGTGACACTGGCTCCTGGGCCTGGCTCATaGGTTGAGGCAGTATTCTGG | + |
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Preference number: 3 (lower is better) Translates to: NSCHFVVDDELPPQVTLAPGPGS*VEAVFW Trigger: CCAGAATACTGCCTCAACCAATGAGCCAGGCCCAGG...AGCCAGTGTCACTTGAGGTGGTAGTTCATCATCAACCACAAAATGACAAGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| 3UTR TCA 72 bp | CAAGGACATCGCAATCCTTTAATTGTAGCACTAAGGTaGTCTGCCTATGGTGTCCGCTGTTGTGGCTCTACC | + |
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Preference number: 3 (lower is better) Translates to: QGHRNPLIVALR*SAYGVRCCGST Trigger: GGTAGAGCCACAACAGCGGACACCATAGGCAGATCACCTTAGTGCTACAATTAAAGGATTGCGATGTCCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR CAA 90 bp | GGTGGTAGGAAGTTTGCAATATCAGGATACTGGTTTTCACATGCCCTAATTAACGGCCTGGCTCATTGGTaGAGGCAGTATTCTGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: GGRKFAISGYWFSHALINGLAHW*RQYSGK Trigger: CTTCCCAGAATACTGCCTCAACCAATGAGCCAGGCC...GTTAATTAGGGCATGTGAAAACCAGTATCCTGATATTGCAAACTTCCTACCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| 3UTR-3UTR CAA 90 bp | ATACACACACAGCTAGAAAACCATCCAACTCTTGTCATTTTGTGGTTGATGATGCCTGGGCCTGGCTCATaGGTTGAGGCAGTATTCTGG | + |
|
Preference number: 3 (lower is better) Translates to: IHTQLENHPTLVILWLMMPGPGS*VEAVFW Trigger: CCAGAATACTGCCTCAACCAATGAGCCAGGCCCAGG...CATCATCAACCACAAAATGACAAGAGTTGGATGGTTTTCTAGCTGTGTGTGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
||
| 3UTR TCA 72 bp | AAGCAAAAGGGAGAAGAGGGTCTGATGATAACAGGTTaGCGCAATGCCAATCTTCAGGTCTCACCTACATTT | + |
|
Preference number: 3 (lower is better) Translates to: KQKGEEGLMITG*RNANLQVSPTF Trigger: AAATGTAGGTGAGACCTGAAGATTGGCATTGCGTCAACCTGTTATCATCAGACCCTCTTCTCCCTTTTGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141629.2 |
||
| 3UTR-3UTR CAA 90 bp | CTGTATGCCTTTCAATGCAAAATGTGGCCTAAGTGTGTCGCTGCATTATTTAGGCTTTGGACCTCAAATTaGAGTTTTACTAATGTCTGC | + |
|
Preference number: 3 (lower is better) Translates to: LYAFQCKMWPKCVAALFRLWTSN*SFTNVC Trigger: GCAGACATTAGTAAAACTCAAATTTGAGGTCCAAAG...CCTAAATAATGCAGCGACACACTTAGGCCACATTTTGCATTGAAAGGCATACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
||
| 3UTR CCA 72 bp | CTGTTGCTTTTAGTTATCAGTCTAAACCAAAGCAACTaGTTCCCACAGACTCTACATTTCAATGCACAAGAG | + |
|
Preference number: 3 (lower is better) Translates to: LLLLVISLNQSN*FPQTLHFNAQE Trigger: CTCTTGTGCATTGAAATGTAGAGTCTGTGGGAACCAGTTGCTTTGGTTTAGACTGATAACTAAAAGCAACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
||
| 3UTR GCA 72 bp | CCAAAGCAACTGGTTCCCACAGACTCTACATTTCAATaGACAAGAGTATTGTATTCCTTACAAATGCTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: PKQLVPTDSTFQ*TRVLYSLQMLS Trigger: AGAAAGCATTTGTAAGGAATACAATACTCTTGTGCATTGAAATGTAGAGTCTGTGGGAACCAGTTGCTTTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
||
| 3UTR-3UTR CAA 90 bp | CTTTCCCTGGCAATAATTAGCACCAAGGCAAAGCTAATTATTACAATATACCTCCCAACTCTTGTCATTTaGTGGTTGATGATGAACTAC | + |
|
Preference number: 3 (lower is better) Translates to: LSLAIISTKAKLIITIYLPTLVI*WLMMNY Trigger: GTAGTTCATCATCAACCACAAAATGACAAGAGTTGG...GAGGTATATTGTAATAATTAGCTTTGCCTTGGTGCTAATTATTGCCAGGGAAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
||
| 3UTR-3UTR CAA 90 bp | CAGGTAGTGATTATAAAACTCTCATCAGGTCTCACCAATATTTTTCTTGCCTTCACTATAGAGCTTGCTTaGGAAAGATTGGTTGATAGC | + |
|
Preference number: 3 (lower is better) Translates to: QVVIIKLSSGLTNIFLAFTIELA*ERLVDS Trigger: GCTATCAACCAATCTTTCCAAAGCAAGCTCTATAGT...GAAGGCAAGAAAAATATTGGTGAGACCTGATGAGAGTTTTATAATCACTACCTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
||
| 3UTR GCA 72 bp | AAAATAATCCAAGCTTTGGGTATTAAGTTGGTAGACTaGTTGCTTAGCTATGAATCCCTAGTGAAGCAAAAA | + |
|
Preference number: 3 (lower is better) Translates to: KIIQALGIKLVD*LLSYESLVKQK Trigger: TTTTTGCTTCACTAGGGATTCATAGCTAAGCAAGCAGTCTACCAACTTAATACCCAAAGCTTGGATTATTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
||
| CDS-3UTR GCA 90 bp | CCGACTATTAGGGCTAGACACCTCTCTCGGTCTGAGGCTTCAGAGTCCATCCCACAGCCCGGCTCTGTCTaGCGCTGCCCTCCACCCCCT | + |
|
Preference number: 4 (lower is better) Translates to: PTIRARHLSRSEASESIPQPGSV*RCPPPP Trigger: AGGGGGTGGAGGGCAGCGGCAGACAGAGCCGGGCTG...TGGGATGGACTCTGAAGCCTCAGACCGAGAGAGGTGTCTAGCCCTAATAGTCGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
||
| CDS-3UTR GCA 90 bp | ATTAGGGCTAGACACCTCTCTCGGTCTGAGGCTTCAGAGTCCATCCCAGCAGACGGCTCTGTCTGCCGCTaGCCTCCACCCCCTCTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: IRARHLSRSEASESIPADGSVCR*PPPPLH Trigger: ATGGAGAGGGGGTGGAGGGCAGCGGCAGACAGAGCC...GTCTGCTGGGATGGACTCTGAAGCCTCAGACCGAGAGAGGTGTCTAGCCCTAAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
||
| CDS-3UTR TCA 90 bp | AGGCTTCAGAGTCCATCCCAGCAGACTCACGAGGTCCTCTCCGGTCCTCTGCCAAAACCCCGGGATCTTTaGGTCTCCCGGTCCTTGACA | + |
|
Preference number: 4 (lower is better) Translates to: RLQSPSQQTHEVLSGPLPKPRDL*VSRSLT Trigger: TGTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTT...TGGCAGAGGACCGGAGAGGACCTCGTGAGTCTGCTGGGATGGACTCTGAAGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
||
| CDS-3UTR GCA 90 bp | AGCAGACTCACGAGGTCCTCTCCGGTCCTCTGCCAGGCCCACAGCTCTGCAGACATCGCATCTGAGGCATaGTCTGGGTTTGTGAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: SRLTRSSPVLCQAHSSADIASEA*SGFVKV Trigger: CACCTTCACAAACCCAGAGCATGCCTCAGATGCGAT...GTCTGCAGAGCTGTGGGCCTGGCAGAGGACCGGAGAGGACCTCGTGAGTCTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
||
| CDS-3UTR TCA 90 bp | GCAGCATGTGGTTCTGCCAGTTCCCCAAAGGCCCAGCATAGAATGCTTCCTTCCAAACCCCGGGATCTTTaGGTCTCCCGGTCCTTGACA | + |
|
Preference number: 4 (lower is better) Translates to: AACGSASSPKAQHRMLPSKPRDL*VSRSLT Trigger: TGTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTT...GGAAGGAAGCATTCTATGCTGGGCCTTTGGGGAACTGGCAGAACCACATGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
||
| CDS-3UTR GCA 90 bp | TGCCAATCTTCAGGTCTCACCTACATTTTGTGTGCATGCCCCATCTCAGTTGTCGGCTCTGTCTGCCGCTaGCCTCCACCCCCTCTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: CQSSGLTYILCACPISVVGSVCR*PPPPLH Trigger: ATGGAGAGGGGGTGGAGGGCAGCGGCAGACAGAGCC...GACAACTGAGATGGGGCATGCACACAAAATGTAGGTGAGACCTGAAGATTGGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000141629.2 |
||
| 3UTR CAA 72 bp | GCCCCAGTGCCCCATAACCTGGGCCTGGCTCATTGGTaGAGGCAGTATTCTGGGAAGTTCCTGAGTCTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: APVPHNLGLAHW*RQYSGKFLSLH Trigger: ATGAAGACTCAGGAACTTCCCAGAATACTGCCTCAACCAATGAGCCAGGCCCAGGTTATGGGGCACTGGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
||
| CDS-3UTR TCA 90 bp | AGGCCCAGCATAGAATGCTTCCTTCCTCTGACCAAGTACCCACCTGGTAGGCTTGAGTCTCCCGGTCCTTaGCAACAACCACCTCAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: RPSIECFLPLTKYPPGRLESPGP*QQPPQR Trigger: TCTCTGAGGTGGTTGTTGTCAAGGACCGGGAGACTC...AAGCCTACCAGGTGGGTACTTGGTCAGAGGAAGGAAGCATTCTATGCTGGGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
||
| CDS-3UTR TCA 90 bp | CCCAGCATAGAATGCTTCCTTCCTCTGACCAAGTACCCACCTGGTAGGCTTAGCAAACCCCGGGATCTTTaGGTCTCCCGGTCCTTGACA | + |
|
Preference number: 4 (lower is better) Translates to: PSIECFLPLTKYPPGRLSKPRDL*VSRSLT Trigger: TGTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTT...GCTAAGCCTACCAGGTGGGTACTTGGTCAGAGGAAGGAAGCATTCTATGCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
||
| CDS-3UTR CCA 90 bp | CAAAGGCCCAGCATAGAATGCTTCCTTCCTCTGACCAAGTACCCACCTGGTAGGCCACTTCCATATCCCTaGTCTCCACCACCTCTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: QRPSIECFLPLTKYPPGRPLPYP*SPPPLE Trigger: CTCTAGAGGTGGTGGAGACCAGGGATATGGAAGTGG...CCTACCAGGTGGGTACTTGGTCAGAGGAAGGAAGCATTCTATGCTGGGCCTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
||
| CDS-3UTR TCA 90 bp | CGCAATGCCAATCTTCAGGTCTCACCTACATTTTGTGTGCATGCCCCATCTCAGAAACCCCGGGATCTTTaGGTCTCCCGGTCCTTGACA | + |
|
Preference number: 4 (lower is better) Translates to: RNANLQVSPTFCVHAPSQKPRDL*VSRSLT Trigger: TGTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTT...CTGAGATGGGGCATGCACACAAAATGTAGGTGAGACCTGAAGATTGGCATTGCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000141629.2 |
||
| CDS-3UTR GCA 90 bp | CAGGGAATCTTGACTGAACTCAGGCTGACGTATCCTCCCCACTCCTCTAAGCTGATCGCATCTGAGGCATaGTCTGGGTTTGTGAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: QGILTELRLTYPPHSSKLIASEA*SGFVKV Trigger: CACCTTCACAAACCCAGAGCATGCCTCAGATGCGAT...CAGCTTAGAGGAGTGGGGAGGATACGTCAGCCTGAGTTCAGTCAAGATTCCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
||
| CDS-3UTR GCA 90 bp | GAGCTCAATTCAAAAATAGAACTTGATGTACTAAAACAGACGTTTCAGCGCAGCCAGCCCGGCTCTGTCTaGCGCTGCCCTCCACCCCCT | + |
|
Preference number: 4 (lower is better) Translates to: ELNSKIELDVLKQTFQRSQPGSV*RCPPPP Trigger: AGGGGGTGGAGGGCAGCGGCAGACAGAGCCGGGCTG...GCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAGCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000129947.9 |
||
| CDS-3UTR GCA 90 bp | CAAAGGCCCAGCATAGAATGCTTCCTTCCTCTGACCAAGTACCCACCTGGTAGGGAAGTGGTCTTCAAGTaGCTGTTCATCGGTGTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: QRPSIECFLPLTKYPPGREVVFK*LFIGVE Trigger: TTCAACACCGATGAACAGGCACTTGAAGACCACTTC...CCTACCAGGTGGGTACTTGGTCAGAGGAAGGAAGCATTCTATGCTGGGCCTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
||
| CDS-3UTR CCA 90 bp | TTTGTGGTTGATGATGAACTACCACCTCAAGTGACACTGGCTTTCCTTCCTCCCCCACTTCCATATCCCTaGTCTCCACCACCTCTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: FVVDDELPPQVTLAFLPPPLPYP*SPPPLE Trigger: CTCTAGAGGTGGTGGAGACCAGGGATATGGAAGTGG...GGGAGGAAGGAAAGCCAGTGTCACTTGAGGTGGTAGTTCATCATCAACCACAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
||
| CDS-3UTR CCA 90 bp | TGTTGTGGCTCTACCTTTAATCTCTCACTGGGTGTTTGGGGAGCTTTGGACCTCCCAAAGCTGCTGAAGTaGTCTTCAAGTGCCTGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: CCGSTFNLSLGVWGALDLPKLLK*SSSACS Trigger: TGAACAGGCACTTGAAGACCACTTCAGCAGCTTTGG...GAGGTCCAAAGCTCCCCAAACACCCAGTGAGAGATTAAAGGTAGAGCCACAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
||
| CDS-3UTR TCA 90 bp | CAATATGGACTCAAGTACTTGGAGAGTGGAAGACAGTCTGTGCTATATAAGTTCGAGTCTCCCGGTCCTTaGCAACAACCACCTCAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: QYGLKYLESGRQSVLYKFESPGP*QQPPQR Trigger: TCTCTGAGGTGGTTGTTGTCAAGGACCGGGAGACTC...GAACTTATATAGCACAGACTGTCTTCCACTCTCCAAGTACTTGAGTCCATATTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
||
| CDS-3UTR TCA 90 bp | GAGCTCAATTCAAAAATAGAACTTGATGTACTAAAACAGACGTTTCAGCGCAGCGAGTCTCCCGGTCCTTaGCAACAACCACCTCAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: ELNSKIELDVLKQTFQRSESPGP*QQPPQR Trigger: TCTCTGAGGTGGTTGTTGTCAAGGACCGGGAGACTC...GCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAGCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
||
| CDS-3UTR TCA 90 bp | ATGATCTTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGAGTCTCCCGGTCCTTaGCAACAACCACCTCAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: MILTRIVHRYIQKSLSGHESPGP*QQPPQR Trigger: TCTCTGAGGTGGTTGTTGTCAAGGACCGGGAGACTC...ATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAAGATCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
||
| CDS-3UTR TCA 90 bp | ATGATCTTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATAAACCCCGGGATCTTTaGGTCTCCCGGTCCTTGACA | + |
|
Preference number: 4 (lower is better) Translates to: MILTRIVHRYIQKSLSGHKPRDL*VSRSLT Trigger: TGTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTT...ATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAAGATCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
||
| CDS-3UTR TCA 90 bp | GAGCTCAATTCAAAAATAGAACTTGATGTACTAAAACAGACGTTTCAGCGCAGCAAACCCCGGGATCTTTaGGTCTCCCGGTCCTTGACA | + |
|
Preference number: 4 (lower is better) Translates to: ELNSKIELDVLKQTFQRSKPRDL*VSRSLT Trigger: TGTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTT...GCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAGCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
||
| CDS-3UTR GCA 90 bp | CTGTATGCCTTTCAATGCAAAATGTGGCCTAAGTGTGTCGCTGCATTATTTAGGATCGCATCTGAGGCATaGTCTGGGTTTGTGAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: LYAFQCKMWPKCVAALFRIASEA*SGFVKV Trigger: CACCTTCACAAACCCAGAGCATGCCTCAGATGCGAT...CCTAAATAATGCAGCGACACACTTAGGCCACATTTTGCATTGAAAGGCATACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
||
| CDS-3UTR TCA 90 bp | ACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGATAAACATGAGTCTCCCGGTCCTTaGCAACAACCACCTCAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: TRIVHRYIQKSLSGHDKHESPGP*QQPPQR Trigger: TCTCTGAGGTGGTTGTTGTCAAGGACCGGGAGACTC...ATGTTTATCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
||
| CDS-3UTR TCA 90 bp | ACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGATAAACATAAACCCCGGGATCTTTaGGTCTCCCGGTCCTTGACA | + |
|
Preference number: 4 (lower is better) Translates to: TRIVHRYIQKSLSGHDKHKPRDL*VSRSLT Trigger: TGTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTT...ATGTTTATCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
||
| CDS-3UTR GCA 90 bp | TCTGTAATGGGATACACGATGCCCTCTTCTGGTTTGAAGATGACAGTGTACTCAGAAGTGGTCTTCAAGTaGCTGTTCATCGGTGTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: SVMGYTMPSSGLKMTVYSEVVFK*LFIGVE Trigger: TTCAACACCGATGAACAGGCACTTGAAGACCACTTC...TGAGTACACTGTCATCTTCAAACCAGAAGAGGGCATCGTGTATCCCATTACAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
||
| CDS-3UTR CCA 90 bp | GAGCTCAATTCAAAAATAGAACTTGATGTACTAAAACAGACGTTTCAGCGCAGCCCACTTCCATATCCCTaGTCTCCACCACCTCTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: ELNSKIELDVLKQTFQRSPLPYP*SPPPLE Trigger: CTCTAGAGGTGGTGGAGACCAGGGATATGGAAGTGG...GCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAGCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 |
||
| CDS-3UTR CCA 90 bp | CTCAATTCAAAAATAGAACTTGATGTACTAAAACAGACGTTTCAGCGCAGCTCCCCACTTCCATATCCCTaGTCTCCACCACCTCTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LNSKIELDVLKQTFQRSSPLPYP*SPPPLE Trigger: CTCTAGAGGTGGTGGAGACCAGGGATATGGAAGTGG...GGAGCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 |
||
| CDS-3UTR CCA 90 bp | ATGATCTTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATCCACTTCCATATCCCTaGTCTCCACCACCTCTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: MILTRIVHRYIQKSLSGHPLPYP*SPPPLE Trigger: CTCTAGAGGTGGTGGAGACCAGGGATATGGAAGTGG...ATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAAGATCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 |
||
| 3UTR CAA 72 bp | AAAGCAAAAGGGAGAAGAGGGTCTGATGATAACAGGTaGACGCAATGCCAATCTTCAGGTCTCACCTACATT | + |
|
Preference number: 4 (lower is better) Translates to: KAKGRRGSDDNR*TQCQSSGLTYI Trigger: AATGTAGGTGAGACCTGAAGATTGGCATTGCGTCAACCTGTTATCATCAGACCCTCTTCTCCCTTTTGCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141629.2 |
||
| CDS-3UTR GCA 90 bp | ATGATCTTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATATCGCATCTGAGGCATaGTCTGGGTTTGTGAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: MILTRIVHRYIQKSLSGHIASEA*SGFVKV Trigger: CACCTTCACAAACCCAGAGCATGCCTCAGATGCGAT...ATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAAGATCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
||
| CDS-3UTR GCA 90 bp | GAGCTCAATTCAAAAATAGAACTTGATGTACTAAAACAGACGTTTCAGCGCAGCATCGCATCTGAGGCATaGTCTGGGTTTGTGAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: ELNSKIELDVLKQTFQRSIASEA*SGFVKV Trigger: CACCTTCACAAACCCAGAGCATGCCTCAGATGCGAT...GCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAGCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
||
| CDS-3UTR GCA 90 bp | GCCCTTTCCCTGGCAATAATTAGCACCAAGGCAAAGCTAATTATTACAATATACATCGCATCTGAGGCATaGTCTGGGTTTGTGAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: ALSLAIISTKAKLIITIYIASEA*SGFVKV Trigger: CACCTTCACAAACCCAGAGCATGCCTCAGATGCGAT...GTATATTGTAATAATTAGCTTTGCCTTGGTGCTAATTATTGCCAGGGAAAGGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
||
| CDS-3UTR GCA 90 bp | TTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGATAAAATCGCATCTGAGGCATaGTCTGGGTTTGTGAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: LTRIVHRYIQKSLSGHDKIASEA*SGFVKV Trigger: CACCTTCACAAACCCAGAGCATGCCTCAGATGCGAT...TTTATCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
||
| CDS-3UTR CCA 90 bp | GAGCTCAATTCAAAAATAGAACTTGATGTACTAAAACAGACGTTTCAGCGCAGCCCAAAGCTGCTGAAGTaGTCTTCAAGTGCCTGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: ELNSKIELDVLKQTFQRSPKLLK*SSSACS Trigger: TGAACAGGCACTTGAAGACCACTTCAGCAGCTTTGG...GCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAGCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
||
| CDS-3UTR CCA 90 bp | ATGATCTTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATCCAAAGCTGCTGAAGTaGTCTTCAAGTGCCTGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: MILTRIVHRYIQKSLSGHPKLLK*SSSACS Trigger: TGAACAGGCACTTGAAGACCACTTCAGCAGCTTTGG...ATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAAGATCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| 3UTR CAA 72 bp | TCTCACTGGGTGTTTGGGGAGCTTTGGACCTCAAATTaGAGTTTTACTAATGTCTGCATGACCATAAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: SHWVFGELWTSN*SFTNVCMTIKL Trigger: AAGCTTTATGGTCATGCAGACATTAGTAAAACTCAAATTTGAGGTCCAAAGCTCCCCAAACACCCAGTGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| CDS-3UTR GCA 90 bp | CTCAATTCAAAAATAGAACTTGATGTACTAAAACAGACGTTTCAGCGCAGCTCCGAAGTGGTCTTCAAGTaGCTGTTCATCGGTGTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: LNSKIELDVLKQTFQRSSEVVFK*LFIGVE Trigger: TTCAACACCGATGAACAGGCACTTGAAGACCACTTC...GGAGCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| CDS-3UTR GCA 90 bp | ATGATCTTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGAAGTGGTCTTCAAGTaGCTGTTCATCGGTGTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: MILTRIVHRYIQKSLSGHEVVFK*LFIGVE Trigger: TTCAACACCGATGAACAGGCACTTGAAGACCACTTC...ATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAAGATCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| CDS-3UTR CCA 90 bp | CTTTCCCTGGCAATAATTAGCACCAAGGCAAAGCTAATTATTACAATATACCTCCCAAAGCTGCTGAAGTaGTCTTCAAGTGCCTGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: LSLAIISTKAKLIITIYLPKLLK*SSSACS Trigger: TGAACAGGCACTTGAAGACCACTTCAGCAGCTTTGG...GAGGTATATTGTAATAATTAGCTTTGCCTTGGTGCTAATTATTGCCAGGGAAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| CDS-3UTR CCA 90 bp | ACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGATAAACATCCAAAGCTGCTGAAGTaGTCTTCAAGTGCCTGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: TRIVHRYIQKSLSGHDKHPKLLK*SSSACS Trigger: TGAACAGGCACTTGAAGACCACTTCAGCAGCTTTGG...ATGTTTATCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| CDS-3UTR GCA 90 bp | ACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGATAAACATGAAGTGGTCTTCAAGTaGCTGTTCATCGGTGTTGAA | + |
|
Preference number: 4 (lower is better) Translates to: TRIVHRYIQKSLSGHDKHEVVFK*LFIGVE Trigger: TTCAACACCGATGAACAGGCACTTGAAGACCACTTC...ATGTTTATCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| CDS-3UTR CAA 90 bp | CTGCGACCACGCCCACCAAAGGCACCCCCTCTGGATCCCCTGGCAGACTTTCCTAAAACCCCGGGATCTTaGAGTCTCCCGGTCCTTGAC | + |
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Preference number: 5 (lower is better) Translates to: LRPRPPKAPPLDPLADFPKTPGS*SLPVLD Trigger: GTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTTT...AGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGCCTTTGGTGGGCGTGGTCGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
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| CDS GCA 90 bp | ACGCCCACCAAAGGCACCCCCTCTGGATCCCCTGGCAGACTTTCCTaGATGATCAACTCGGATTTGGCGCCCATCCAGGGACTCTCCATT | + |
|
Preference number: 5 (lower is better) Translates to: TPTKGTPSGSPGRLS*MINSDLAPIQGLSI Trigger: AATGGAGAGTCCCTGGATGGGCGCCAAATCCGAGTTGATCATGCAGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGCCTTTGGTGGGCGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000040010.10 ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115619.8 ENSMUST00000115621.9 |
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| CDS-3UTR CAA 90 bp | TGCTTCCTTCCTCTGACCAAGTACCCACCTGGTAGGCTTAGCCCCAGTGCCCCAAAAACCCCGGGATCTTaGAGTCTCCCGGTCCTTGAC | + |
|
Preference number: 5 (lower is better) Translates to: CFLPLTKYPPGRLSPSAPKTPGS*SLPVLD Trigger: GTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTTT...TGGGGCACTGGGGCTAAGCCTACCAGGTGGGTACTTGGTCAGAGGAAGGAAGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| CDS TCA 90 bp | CCACCAAAGGCACCCCCTCTGGATCCCCTGGCAGACTTTCCTGCATaGTCAACTCGGATTTGGCGCCCATCCAGGGACTCTCCATTCATA | + |
|
Preference number: 5 (lower is better) Translates to: PPKAPPLDPLADFPA*STRIWRPSRDSPFI Trigger: TATGAATGGAGAGTCCCTGGATGGGCGCCAAATCCGAGTTGATCATGCAGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGCCTTTGGTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000040010.10 ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115619.8 ENSMUST00000115621.9 |
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| CDS-3UTR CAA 90 bp | CCACAGCTCTGCAGACTCTACTACCTAAGCCCAGAGCAGGTCAACCATCCACAGAAAACCCCGGGATCTTaGAGTCTCCCGGTCCTTGAC | + |
|
Preference number: 5 (lower is better) Translates to: PQLCRLYYLSPEQVNHPQKTPGS*SLPVLD Trigger: GTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTTT...CTGTGGATGGTTGACCTGCTCTGGGCTTAGGTAGTAGAGTCTGCAGAGCTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
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| CDS-3UTR CAA 90 bp | CCCAGCATAGAATGCTTCCTTCCTCTGACCAAGTACCCACCTGGTAGGCTTAGCATGATCAACTCGGATTaGGCGCCCATCCAGGGACTC | + |
|
Preference number: 5 (lower is better) Translates to: PSIECFLPLTKYPPGRLSMINSD*APIQGL Trigger: GAGTCCCTGGATGGGCGCCAAATCCGAGTTGATCAT...GCTAAGCCTACCAGGTGGGTACTTGGTCAGAGGAAGGAAGCATTCTATGCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| CDS-3UTR CAA 90 bp | CAAAGGCCCAGCATAGAATGCTTCCTTCCTCTGACCAAGTACCCACCTGGTAGGTCATCGGTGTTGAAGTaGAGCCCTCCTACGAAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: QRPSIECFLPLTKYPPGRSSVLK*SPPTKS Trigger: ACTCTTCGTAGGAGGGCTCAACTTCAACACCGATGA...CCTACCAGGTGGGTACTTGGTCAGAGGAAGGAAGCATTCTATGCTGGGCCTTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| CDS-3UTR CAA 90 bp | CCCAGCATAGAATGCTTCCTTCCTCTGACCAAGTACCCACCTGGTAGGCTTAGCTCATCGGTGTTGAAGTaGAGCCCTCCTACGAAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: PSIECFLPLTKYPPGRLSSSVLK*SPPTKS Trigger: ACTCTTCGTAGGAGGGCTCAACTTCAACACCGATGA...GCTAAGCCTACCAGGTGGGTACTTGGTCAGAGGAAGGAAGCATTCTATGCTGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040010.10 ENSMUST00000115619.8 |
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| CDS-3UTR CAA 90 bp | GCTGAGAAGGTGGTAGGAAGTTTGCAATATCAGGATACTGGTTTTCACATGCCCATGATCAACTCGGATTaGGCGCCCATCCAGGGACTC | + |
|
Preference number: 5 (lower is better) Translates to: AEKVVGSLQYQDTGFHMPMINSD*APIQGL Trigger: GAGTCCCTGGATGGGCGCCAAATCCGAGTTGATCAT...GGGCATGTGAAAACCAGTATCCTGATATTGCAAACTTCCTACCACCTTCTCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040010.10 |
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| CDS-3UTR CAA 90 bp | GAGCTCAATTCAAAAATAGAACTTGATGTACTAAAACAGACGTTTCAGCGCAGCAAAACCCCGGGATCTTaGAGTCTCCCGGTCCTTGAC | + |
|
Preference number: 5 (lower is better) Translates to: ELNSKIELDVLKQTFQRSKTPGS*SLPVLD Trigger: GTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTTT...GCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAGCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| CDS-3UTR CAA 90 bp | CTCAATTCAAAAATAGAACTTGATGTACTAAAACAGACGTTTCAGCGCAGCTCCATGATCAACTCGGATTaGGCGCCCATCCAGGGACTC | + |
|
Preference number: 5 (lower is better) Translates to: LNSKIELDVLKQTFQRSSMINSD*APIQGL Trigger: GAGTCCCTGGATGGGCGCCAAATCCGAGTTGATCAT...GGAGCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 |
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| CDS-3UTR CAA 90 bp | ATGATCTTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATATGATCAACTCGGATTaGGCGCCCATCCAGGGACTC | + |
|
Preference number: 5 (lower is better) Translates to: MILTRIVHRYIQKSLSGHMINSD*APIQGL Trigger: GAGTCCCTGGATGGGCGCCAAATCCGAGTTGATCAT...ATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAAGATCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 |
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| CDS-3UTR CAA 90 bp | TTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGATAAAAAAACCCCGGGATCTTaGAGTCTCCCGGTCCTTGAC | + |
|
Preference number: 5 (lower is better) Translates to: LTRIVHRYIQKSLSGHDKKTPGS*SLPVLD Trigger: GTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTTT...TTTATCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAA 44% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| CDS-3UTR CAA 90 bp | ACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGATAAACATAAAACCCCGGGATCTTaGAGTCTCCCGGTCCTTGAC | + |
|
Preference number: 5 (lower is better) Translates to: TRIVHRYIQKSLSGHDKHKTPGS*SLPVLD Trigger: GTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTTT...ATGTTTATCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| CDS-3UTR CAA 90 bp | ACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGATAAACATATGATCAACTCGGATTaGGCGCCCATCCAGGGACTC | + |
|
Preference number: 5 (lower is better) Translates to: TRIVHRYIQKSLSGHDKHMINSD*APIQGL Trigger: GAGTCCCTGGATGGGCGCCAAATCCGAGTTGATCAT...ATGTTTATCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 |
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| CDS-3UTR CAA 90 bp | TTGACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGATAAAATGATCAACTCGGATTaGGCGCCCATCCAGGGACTC | + |
|
Preference number: 5 (lower is better) Translates to: LTRIVHRYIQKSLSGHDKMINSD*APIQGL Trigger: GAGTCCCTGGATGGGCGCCAAATCCGAGTTGATCAT...TTTATCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 |
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| CDS-3UTR CAA 90 bp | GAGCTCAATTCAAAAATAGAACTTGATGTACTAAAACAGACGTTTCAGCGCAGCTCATCGGTGTTGAAGTaGAGCCCTCCTACGAAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: ELNSKIELDVLKQTFQRSSSVLK*SPPTKS Trigger: ACTCTTCGTAGGAGGGCTCAACTTCAACACCGATGA...GCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAGCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| CDS-3UTR CAA 90 bp | CTCAATTCAAAAATAGAACTTGATGTACTAAAACAGACGTTTCAGCGCAGCTCCTCATCGGTGTTGAAGTaGAGCCCTCCTACGAAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: LNSKIELDVLKQTFQRSSSSVLK*SPPTKS Trigger: ACTCTTCGTAGGAGGGCTCAACTTCAACACCGATGA...GGAGCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| CDS-3UTR CAA 90 bp | ACTCGGATTGTTCATAGGTACATTCAGAAATCACTTTCTGGCCATGATAAACATTCATCGGTGTTGAAGTaGAGCCCTCCTACGAAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: TRIVHRYIQKSLSGHDKHSSVLK*SPPTKS Trigger: ACTCTTCGTAGGAGGGCTCAACTTCAACACCGATGA...ATGTTTATCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCCGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115621.9 ENSMUST00000129947.9 |
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| CDS TCA 72 bp | GCACCCCCTCTGGATCCCCTGGCAGACTTTCCTGCATaGTCAACTCGGATTTGGCGCCCATCCAGGGACTCT | + |
|
Preference number: 6 (lower is better) Translates to: APPLDPLADFPA*STRIWRPSRDS Trigger: AGAGTCCCTGGATGGGCGCCAAATCCGAGTTGATCATGCAGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000040010.10 ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115619.8 ENSMUST00000115621.9 |
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| CDS GCA 72 bp | CCCTCTCCATTCATAGCTCTCATCGCATCTGAGGCATaGTCTGGGTTTGTGAAGGTGATGAAGCCAAAACCC | + |
|
Preference number: 6 (lower is better) Translates to: PSPFIALIASEA*SGFVKVMKPKP Trigger: GGGTTTTGGCTTCATCACCTTCACAAACCCAGAGCATGCCTCAGATGCGATGAGAGCTATGAATGGAGAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129947.9 ENSMUST00000141629.2 |
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| CDS GCA 72 bp | GACTCTCCATTCATAGCTCTCATCGCATCTGAGGCATaGTCTGGGTTTGTGAAGGTGATGAAGCCAAAACCC | + |
|
Preference number: 6 (lower is better) Translates to: DSPFIALIASEA*SGFVKVMKPKP Trigger: GGGTTTTGGCTTCATCACCTTCACAAACCCAGAGCATGCCTCAGATGCGATGAGAGCTATGAATGGAGAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000040010.10 ENSMUST00000115615.9 ENSMUST00000115616.8 ENSMUST00000115617.10 ENSMUST00000115619.8 ENSMUST00000115621.9 |
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