Pregenerated sensors for RBM24 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038132Ensembl transcript IDs: ENSMUST00000037923.5
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCCACCACCGTCCCCGCCGTCACACCCCGAAACTGATTGTTCGATaGCCATCTTCTGAGATAGCACAAACACACTACCTCCTGCCTCAA | + |
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Preference number: 1 (lower is better) Translates to: VHHRPRRHTPKLIVR*PSSEIAQTHYLLPQ Trigger: TTGAGGCAGGAGGTAGTGTGTTTGTGCTATCTCAGAAGATGGGCATCGAACAATCAGTTTCGGGGTGTGACGGCGGGGACGGTGGTGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR TCA 90 bp | ACAAGTGATGGACTCTTTCTTGAACAGTGTGTGCTGTTGATTGTCTaGGCGGCTGGTGCAGTATCAATGGCTCCACAACCCCACTCGTCC | + |
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Preference number: 1 (lower is better) Translates to: TSDGLFLEQCVLLIV*AAGAVSMAPQPHSS Trigger: GGACGAGTGGGGTTGTGGAGCCATTGATACTGCACCAGCCGCTCAGACAATCAACAGCACACACTGTTCAAGAAAGAGTCCATCACTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR GCA 90 bp | ATAAATAATTTGCACAGGAGAGCCACGCCCTCCTTTGCGGACCACTaGCCGGCACAGGAATACTTAAATCCAGTGACAATGGAGAGAGTC | + |
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Preference number: 1 (lower is better) Translates to: INNLHRRATPSFADH*PAQEYLNPVTMERV Trigger: GACTCTCTCCATTGTCACTGGATTTAAGTATTCCTGTGCCGGGCAGTGGTCCGCAAAGGAGGGCGTGGCTCTCCTGTGCAAATTATTTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR GCA 90 bp | CACAGGAGAGCCACGCCCTCCTTTGCGGACCACTGCCCGGCACAGGAATACTTAGAAGGGGCGAGCATCTaGAACTTCTGCCTGCCTTTA | + |
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Preference number: 2 (lower is better) Translates to: HRRATPSFADHCPAQEYLEGASI*NFCLPL Trigger: TAAAGGCAGGCAGAAGTTGCAGATGCTCGCCCCTTC...TAAGTATTCCTGTGCCGGGCAGTGGTCCGCAAAGGAGGGCGTGGCTCTCCTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR CCA 90 bp | ACACGAGGAAAGCGGGGATGCCATGAGTCCCCGGTACATGAGATCCACAGGGGGGATTGTCTGAGCGGCTaGTGCAGTATCAATGGCTCC | + |
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Preference number: 2 (lower is better) Translates to: TRGKRGCHESPVHEIHRGDCLSG*CSINGS Trigger: GGAGCCATTGATACTGCACCAGCCGCTCAGACAATC...CCCCCTGTGGATCTCATGTACCGGGGACTCATGGCATCCCCGCTTTCCTCGTGT 58% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR GCA 90 bp | AGCTTTGGTACCTGTCCACCACCGTCCCCGCCGTCACACCCCGAAACTGATTGTTCCCATTGGTACCCCTaGCATCATCTCCTAGTGGCT | + |
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Preference number: 2 (lower is better) Translates to: SFGTCPPPSPPSHPETDCSHWYP*HHLLVA Trigger: AGCCACTAGGAGATGATGGCAGGGGTACCAATGGGA...ACAATCAGTTTCGGGGTGTGACGGCGGGGACGGTGGTGGACAGGTACCAAAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR TCA 90 bp | CATGAGTCCCCGGTACATGAGATCCACAGGGGGAAAGCAATTGAGGAAGCACAGAACAGTGTGTGCTGTTaGTTGTCTGAGCGGCTGGTG | + |
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Preference number: 2 (lower is better) Translates to: HESPVHEIHRGKAIEEAQNSVCC*LSERLV Trigger: CACCAGCCGCTCAGACAATCAACAGCACACACTGTT...CTGTGCTTCCTCAATTGCTTTCCCCCTGTGGATCTCATGTACCGGGGACTCATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR TCA 90 bp | CATGAGTCCCCGGTACATGAGATCCACAGGGGGAAAGCAATTGAGGAAGCACAGGAAATCATCCCCAAGTaGCAGGGAATGGGGAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: HESPVHEIHRGKAIEEAQEIIPK*QGMGRG Trigger: TCCTCTCCCCATTCCCTGTCACTTGGGGATGATTTC...CTGTGCTTCCTCAATTGCTTTCCCCCTGTGGATCTCATGTACCGGGGACTCATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR TCA 90 bp | CAAGTGACAGGGAATGGGGAGAGGAGTTATAATGGGACAAGCTCCTCCCACGAGCGTCCACAGGACAGATaGGAAAATAGCTTTGGTACC | + |
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Preference number: 2 (lower is better) Translates to: QVTGNGERSYNGTSSSHERPQDR*ENSFGT Trigger: GGTACCAAAGCTATTTTCTCATCTGTCCTGTGGACG...CTCGTGGGAGGAGCTTGTCCCATTATAACTCCTCTCCCCATTCCCTGTCACTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR GCA 90 bp | TCAGACAGTCCCGAAGGGGCGAGCATCTGCAACTTCTGCCTGCCTTTACCCATAATTCAAGCTACATATTaGTCACTCCGTATTCCCTGG | + |
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Preference number: 2 (lower is better) Translates to: SDSPEGASICNFCLPLPIIQATY*SLRIPW Trigger: CCAGGGAATACGGAGTGAGCAATATGTAGCTTGAAT...TATGGGTAAAGGCAGGCAGAAGTTGCAGATGCTCGCCCCTTCGGGACTGTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR GCA 90 bp | GGATGCCATGAGTCCCCGGTACATGAGATCCACAGGGGGAAAGCAATTGAGGAAAAACACACTACCTCCTaGCTCAACAAAGTTCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: GCHESPVHEIHRGKAIEEKHTTS*LNKVLQ Trigger: CTGCAGAACTTTGTTGAGGCAGGAGGTAGTGTGTTT...TTCCTCAATTGCTTTCCCCCTGTGGATCTCATGTACCGGGGACTCATGGCATCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR TCA 90 bp | CCTCCCACGAGTACAAGTGATGGACTCTTTCTTGAACAGTGTGTGCTGTTGATTCGGGCTCTTTGGGATTaGCTTCAAAAACTGTTTCTC | + |
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Preference number: 2 (lower is better) Translates to: PPTSTSDGLFLEQCVLLIRALWD*LQKLFL Trigger: GAGAAACAGTTTTTGAAGTCAATCCCAAAGAGCCCG...AATCAACAGCACACACTGTTCAAGAAAGAGTCCATCACTTGTACTCGTGGGAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR GCA 90 bp | AGTTCTGCAGGCCTGCCGTTACTGCAACGAAGGACAACCAGCGCTTTTCTGTCTTTGGAAAAGGCAGTTTaGTTCCCTGATACTATAAAA | + |
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Preference number: 2 (lower is better) Translates to: SSAGLPLLQRRTTSAFLSLEKAV*FPDTIK Trigger: TTTTATAGTATCAGGGAAGCAAACTGCCTTTTCCAA...AGACAGAAAAGCGCTGGTTGTCCTTCGTTGCAGTAACGGCAGGCCTGCAGAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR GCA 72 bp | TTGCACAGGAGAGCCACGCCCTCCTTTGCGGACCACTaGCCGGCACAGGAATACTTAAATCCAGTGACAATG | + |
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Preference number: 3 (lower is better) Translates to: LHRRATPSFADH*PAQEYLNPVTM Trigger: CATTGTCACTGGATTTAAGTATTCCTGTGCCGGGCAGTGGTCCGCAAAGGAGGGCGTGGCTCTCCTGTGCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR TCA 72 bp | CAATGGCTCCACAACCCCACTCGTCCACAGGACAGATaGGAAAATAGCTTTGGTACCTGTCCACCACCGTCC | + |
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Preference number: 3 (lower is better) Translates to: QWLHNPTRPQDR*ENSFGTCPPPS Trigger: GGACGGTGGTGGACAGGTACCAAAGCTATTTTCTCATCTGTCCTGTGGACGAGTGGGGTTGTGGAGCCATTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR TCA 72 bp | AAAGACAAGTGGTGTGGTGAAAGCCTGACCCGCAGATaGAATCATCCCCAAGTGACAGGGAATGGGGAGAGG | + |
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Preference number: 3 (lower is better) Translates to: KDKWCGESLTRR*NHPQVTGNGER Trigger: CCTCTCCCCATTCCCTGTCACTTGGGGATGATTTCATCTGCGGGTCAGGCTTTCACCACACCACTTGTCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR GCA 72 bp | AGCACAAACACACTACCTCCTGCCTCAACAAAGTTCTaGAGGCCTGCCGTTACTGCAACGAAGGACAACCAG | + |
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Preference number: 3 (lower is better) Translates to: STNTLPPASTKF*RPAVTATKDNQ Trigger: CTGGTTGTCCTTCGTTGCAGTAACGGCAGGCCTGCAGAACTTTGTTGAGGCAGGAGGTAGTGTGTTTGTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR CAA 90 bp | TCAGACAGTCCCGAAGGGGCGAGCATCTGCAACTTCTGCCTGCCTTTACCCATAGATGAGAAAATAGCTTaGGTACCTGTCCACCACCGT | + |
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Preference number: 3 (lower is better) Translates to: SDSPEGASICNFCLPLPIDEKIA*VPVHHR Trigger: ACGGTGGTGGACAGGTACCAAAGCTATTTTCTCATC...TATGGGTAAAGGCAGGCAGAAGTTGCAGATGCTCGCCCCTTCGGGACTGTCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR TCA 72 bp | GGACTCTTTCTTGAACAGTGTGTGCTGTTGATTGTCTaGGCGGCTGGTGCAGTATCAATGGCTCCACAACCC | + |
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Preference number: 3 (lower is better) Translates to: GLFLEQCVLLIV*AAGAVSMAPQP Trigger: GGGTTGTGGAGCCATTGATACTGCACCAGCCGCTCAGACAATCAACAGCACACACTGTTCAAGAAAGAGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR GCA 72 bp | TCCTGCCTCAACAAAGTTCTGCAGGCCTGCCGTTACTaGAACGAAGGACAACCAGCGCTTTTCTGTCTTGTT | + |
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Preference number: 3 (lower is better) Translates to: SCLNKVLQACRY*NEGQPALFCLV Trigger: AACAAGACAGAAAAGCGCTGGTTGTCCTTCGTTGCAGTAACGGCAGGCCTGCAGAACTTTGTTGAGGCAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR CAA 90 bp | TTTGGTACCTGTCCACCACCGTCCCCGCCGTCACACCCCGAAACTGATTGTTCGATAGCATTTTCTAACTaGGAAAAGGCAGTTTGCTTC | + |
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Preference number: 3 (lower is better) Translates to: FGTCPPPSPPSHPETDCSIAFSN*EKAVCF Trigger: GAAGCAAACTGCCTTTTCCAAGTTAGAAAATGCTAT...CGAACAATCAGTTTCGGGGTGTGACGGCGGGGACGGTGGTGGACAGGTACCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR-3UTR CAA 90 bp | TCAGACAGTCCCGAAGGGGCGAGCATCTGCAACTTCTGCCTGCCTTTACCCATAAAAAGAGAAACCCTTTaGACTTTGATCAGACAGCTG | + |
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Preference number: 3 (lower is better) Translates to: SDSPEGASICNFCLPLPIKRETL*TLIRQL Trigger: CAGCTGTCTGATCAAAGTCAAAAGGGTTTCTCTTTT...TATGGGTAAAGGCAGGCAGAAGTTGCAGATGCTCGCCCCTTCGGGACTGTCTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR TCA 72 bp | CAAGTGATGGACTCTTTCTTGAACAGTGTGTGCTGTTaGTTGTCTGAGCGGCTGGTGCAGTATCAATGGCTC | + |
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Preference number: 3 (lower is better) Translates to: QVMDSFLNSVCC*LSERLVQYQWL Trigger: GAGCCATTGATACTGCACCAGCCGCTCAGACAATCAACAGCACACACTGTTCAAGAAAGAGTCCATCACTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR GCA 90 bp | TCAGACAGTCCCGAAGGGGCGAGCATCTGCAACTTCTGCCTGCCTTTACCCATAAAAGGCGGCTGCGGCTaGAGCAGCTGCAGCCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SDSPEGASICNFCLPLPIKGGCG*SSCSRS Trigger: GCTGCGGCTGCAGCTGCTGCAGCCGCAGCCGCCTTT...TATGGGTAAAGGCAGGCAGAAGTTGCAGATGCTCGCCCCTTCGGGACTGTCTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR GCA 90 bp | CTCCTGCCTCAACAAAGTTCTGCAGGCCTGCCGTTACTGCAACGAAGGACAACCCTGGCCAAAGGCGGCTaGGGCTGCAGCAGCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LLPQQSSAGLPLLQRRTTLAKGG*GCSSCS Trigger: GCTGCAGCTGCTGCAGCCGCAGCCGCCTTTGGCCAG...GGTTGTCCTTCGTTGCAGTAACGGCAGGCCTGCAGAACTTTGTTGAGGCAGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR GCA 90 bp | GCTTTGGTACCTGTCCACCACCGTCCCCGCCGTCACACCCCGAAACTGATTGTTTGGGGTTGGGATCCTTaGAGGCCCTTTCAGCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: ALVPVHHRPRRHTPKLIVWGWDP*RPFQRQ Trigger: CTGCCGCTGAAAGGGCCTGCAAGGATCCCAACCCCA...AACAATCAGTTTCGGGGTGTGACGGCGGGGACGGTGGTGGACAGGTACCAAAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR GCA 90 bp | GCTTTGGTACCTGTCCACCACCGTCCCCGCCGTCACACCCCGAAACTGATTGTTAGACCTCAAAGTACTTaGGCAGGCTGGCGTCGGTGG | + |
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Preference number: 4 (lower is better) Translates to: ALVPVHHRPRRHTPKLIVRPQST*AGWRRW Trigger: CCACCGACGCCAGCCTGCGCAAGTACTTTGAGGTCT...AACAATCAGTTTCGGGGTGTGACGGCGGGGACGGTGGTGGACAGGTACCAAAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR CCA 90 bp | TCAGACAGTCCCGAAGGGGCGAGCATCTGCAACTTCTGCCTGCCTTTACCCATAAGTACTTGCGCAGGCTaGCGTCGGTGGTGTGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: SDSPEGASICNFCLPLPISTCAG*RRWCGR Trigger: CCTACCACACCACCGACGCCAGCCTGCGCAAGTACT...TATGGGTAAAGGCAGGCAGAAGTTGCAGATGCTCGCCCCTTCGGGACTGTCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR TCA 90 bp | CATGAGTCCCCGGTACATGAGATCCACAGGGGGAAAGCAATTGAGGAAGCACAGGCTGCACATGGGGAATaGCCACTCCAGGCTGCACAA | + |
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Preference number: 4 (lower is better) Translates to: HESPVHEIHRGKAIEEAQAAHGE*PLQAAQ Trigger: TTGTGCAGCCTGGAGTGGTCATTCCCCATGTGCAGC...CTGTGCTTCCTCAATTGCTTTCCCCCTGTGGATCTCATGTACCGGGGACTCATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR TCA 90 bp | CATGAGTCCCCGGTACATGAGATCCACAGGGGGAAAGCAATTGAGGAAGCACAGCCTTCCTACCATCGATaGTGGGGTTGGGATCCTTGC | + |
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Preference number: 4 (lower is better) Translates to: HESPVHEIHRGKAIEEAQPSYHR*WGWDPC Trigger: GCAAGGATCCCAACCCCATCATCGATGGTAGGAAGG...CTGTGCTTCCTCAATTGCTTTCCCCCTGTGGATCTCATGTACCGGGGACTCATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR TCA 90 bp | AGTTCTGCAGGCCTGCCGTTACTGCAACGAAGGACAACCAGCGCTTTTCTGTCTTCTGTCTGCAGCTGTTaGGGCTGGTACTGGCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: SSAGLPLLQRRTTSAFLSSVCSC*GWYWPK Trigger: CTTTGGCCAGTACCAGCCTCAACAGCTGCAGACAGA...AGACAGAAAAGCGCTGGTTGTCCTTCGTTGCAGTAACGGCAGGCCTGCAGAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR GCA 90 bp | TCAGACAGTCCCGAAGGGGCGAGCATCTGCAACTTCTGCCTGCCTTTACCCATAAGCAGCTGGGGATGCTaGATAGGGGTACTGGTCATA | + |
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Preference number: 4 (lower is better) Translates to: SDSPEGASICNFCLPLPISSWGC*IGVLVI Trigger: TATGACCAGTACCCCTATGCAGCATCCCCAGCTGCT...TATGGGTAAAGGCAGGCAGAAGTTGCAGATGCTCGCCCCTTCGGGACTGTCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR GCA 90 bp | CATGAGTCCCCGGTACATGAGATCCACAGGGGGAAAGCAATTGAGGAAGCACAGAGTGGTTACATAGCCTaGAGCAGCTGGGGATGCTGC | + |
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Preference number: 4 (lower is better) Translates to: HESPVHEIHRGKAIEEAQSGYIA*SSWGCC Trigger: GCAGCATCCCCAGCTGCTGCAGGCTATGTAACCACT...CTGTGCTTCCTCAATTGCTTTCCCCCTGTGGATCTCATGTACCGGGGACTCATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR CCA 90 bp | CAAGTGACAGGGAATGGGGAGAGGAGTTATAATGGGACAAGCTCCTCCCACGAGATAGCCTGCAGCAGCTaGGGATGCTGCATAGGGGTA | + |
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Preference number: 4 (lower is better) Translates to: QVTGNGERSYNGTSSSHEIACSS*GCCIGV Trigger: TACCCCTATGCAGCATCCCCAGCTGCTGCAGGCTAT...CTCGTGGGAGGAGCTTGTCCCATTATAACTCCTCTCCCCATTCCCTGTCACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR GCA 90 bp | CACAGGAGAGCCACGCCCTCCTTTGCGGACCACTGCCCGGCACAGGAATACTTAAAGGCAAAACCTGGCTaGATGATTCTTGGTTTTGCT | + |
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Preference number: 4 (lower is better) Translates to: HRRATPSFADHCPAQEYLKAKPG*MILGFA Trigger: AGCAAAACCAAGAATCATGCAGCCAGGTTTTGCCTT...TAAGTATTCCTGTGCCGGGCAGTGGTCCGCAAAGGAGGGCGTGGCTCTCCTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR GCA 90 bp | TTGACTTCAAAAACTGTTTCTCGCCCTCCCTTTCTCCCCTTATCACCTGTAGCATGCAGCAGCTGGGGATaGTGCATAGGGGTACTGGTC | + |
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Preference number: 4 (lower is better) Translates to: LTSKTVSRPPFLPLSPVACSSWG*CIGVLV Trigger: GACCAGTACCCCTATGCAGCATCCCCAGCTGCTGCA...TGCTACAGGTGATAAGGGGAGAAAGGGAGGGCGAGAAACAGTTTTTGAAGTCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR CCA 90 bp | CATGAGTCCCCGGTACATGAGATCCACAGGGGGAAAGCAATTGAGGAAGCACAGGCCAAAGGCAAAACCTaGCTGCATGATTCTTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: HESPVHEIHRGKAIEEAQAKGKT*LHDSWF Trigger: AAACCAAGAATCATGCAGCCAGGTTTTGCCTTTGGC...CTGTGCTTCCTCAATTGCTTTCCCCCTGTGGATCTCATGTACCGGGGACTCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR CCA 90 bp | CCTCCCACGAGTACAAGTGATGGACTCTTTCTTGAACAGTGTGTGCTGTTGATTAGCTGTAGCCCCCAGTaGTTACATAGCCTGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: PPTSTSDGLFLEQCVLLISCSPQ*LHSLQQ Trigger: CTGCTGCAGGCTATGTAACCACTGGGGGCTACAGCT...AATCAACAGCACACACTGTTCAAGAAAGAGTCCATCACTTGTACTCGTGGGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR TCA 90 bp | ACAACCCCACTCGTCCACAGGACAGATGAGAAAATAGCTTTGGTACCTGTCCACCAAAACCTGGCTGCATaGTTCTTGGTTTTGCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: TTPLVHRTDEKIALVPVHQNLAA*FLVLLP Trigger: TGGGAGCAAAACCAAGAATCATGCAGCCAGGTTTTG...GTGGACAGGTACCAAAGCTATTTTCTCATCTGTCCTGTGGACGAGTGGGGTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| 3UTR CAA 72 bp | CATCTCCTAGTGGCTATTCTGTGTAACTCGGGCTCTTaGGGATTGACTTCAAAAACTGTTTCTCGCCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: HLLVAILCNSGS*GLTSKTVSRPP Trigger: GGGAGGGCGAGAAACAGTTTTTGAAGTCAATCCCAAAGAGCCCGAGTTACACAGAATAGCCACTAGGAGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR CCA 90 bp | TTAAATCTACTTTTACGCGTAATTCAAGCTACATATTGCTCACTCCGTATTCCCGCTGTGGGCTGCACATaGGGAATGACCACTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LNLLLRVIQATYCSLRIPAVGCT*GMTTPG Trigger: GCCTGGAGTGGTCATTCCCCATGTGCAGCCCACAGC...GGGAATACGGAGTGAGCAATATGTAGCTTGAATTACGCGTAAAAGTAGATTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR CCA 90 bp | TTGACTTCAAAAACTGTTTCTCGCCCTCCCTTTCTCCCCTTATCACCTGTAGCATGGCTGCATGATTCTTaGTTTTGCTCCCAAGTATGC | + |
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Preference number: 4 (lower is better) Translates to: LTSKTVSRPPFLPLSPVAWLHDS*FCSQVC Trigger: GCATACTTGGGAGCAAAACCAAGAATCATGCAGCCA...TGCTACAGGTGATAAGGGGAGAAAGGGAGGGCGAGAAACAGTTTTTGAAGTCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR GCA 90 bp | CCTCCCACGAGTACAAGTGATGGACTCTTTCTTGAACAGTGTGTGCTGTTGATTCATGATTCTTGGTTTTaGTCCCAAGTATGCCAGATT | + |
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Preference number: 4 (lower is better) Translates to: PPTSTSDGLFLEQCVLLIHDSWF*SQVCQI Trigger: AATCTGGCATACTTGGGAGCAAAACCAAGAATCATG...AATCAACAGCACACACTGTTCAAGAAAGAGTCCATCACTTGTACTCGTGGGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS TCA 90 bp | ACGGTGTGGTGGAAGCCGCGGCTGCTGTGGGCTGCACATGGGGAATaGCCACTCCAGGCTGCACAAAAGCCTGCGGGTAGACGTAGTGGG | + |
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Preference number: 5 (lower is better) Translates to: TVWWKPRLLWAAHGE*PLQAAQKPAGRRSG Trigger: CCCACTACGTCTACCCGCAGGCTTTTGTGCAGCCTGGAGTGGTCATTCCCCATGTGCAGCCCACAGCAGCCGCGGCTTCCACCACACCGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS GCA 90 bp | GGCGGCTCCAGTGTAATCAATGTACGGTGTGGTGGAAGCCGCGGCTaGTGTGGGCTGCACATGGGGAATGACCACTCCAGGCTGCACAAA | + |
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Preference number: 5 (lower is better) Translates to: GGSSVINVRCGGSRG*CGLHMGNDHSRLHK Trigger: TTTGTGCAGCCTGGAGTGGTCATTCCCCATGTGCAGCCCACAGCAGCCGCGGCTTCCACCACACCGTACATTGATTACACTGGAGCCGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR CAA 90 bp | CACAGGAGAGCCACGCCCTCCTTTGCGGACCACTGCCCGGCACAGGAATACTTAAAGACCTCAAAGTACTaGCGCAGGCTGGCGTCGGTG | + |
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Preference number: 5 (lower is better) Translates to: HRRATPSFADHCPAQEYLKTSKY*RRLASV Trigger: CACCGACGCCAGCCTGCGCAAGTACTTTGAGGTCTT...TAAGTATTCCTGTGCCGGGCAGTGGTCCGCAAAGGAGGGCGTGGCTCTCCTGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR CAA 90 bp | AGCTTTGGTACCTGTCCACCACCGTCCCCGCCGTCACACCCCGAAACTGATTGTATGGGGTTGGGATCCTaGCAGGCCCTTTCAGCGGCA | + |
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Preference number: 5 (lower is better) Translates to: SFGTCPPPSPPSHPETDCMGLGS*QALSAA Trigger: TGCCGCTGAAAGGGCCTGCAAGGATCCCAACCCCAT...ACAATCAGTTTCGGGGTGTGACGGCGGGGACGGTGGTGGACAGGTACCAAAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS TCA 90 bp | TTGCTCCCAAGTATGCCAGATTCACATTGGCCTTCCTACCATCGATaGTGGGGTTGGGATCCTTGCAGGCCCTTTCAGCGGCAGCCCTGT | + |
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Preference number: 5 (lower is better) Translates to: LLPSMPDSHWPSYHR*WGWDPCRPFQRQPC Trigger: ACAGGGCTGCCGCTGAAAGGGCCTGCAAGGATCCCAACCCCATCATCGATGGTAGGAAGGCCAATGTGAATCTGGCATACTTGGGAGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR CAA 90 bp | AGCTTTGGTACCTGTCCACCACCGTCCCCGCCGTCACACCCCGAAACTGATTGTTATGCCAGATTCACATaGGCCTTCCTACCATCGATG | + |
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Preference number: 5 (lower is better) Translates to: SFGTCPPPSPPSHPETDCYARFT*AFLPSM Trigger: CATCGATGGTAGGAAGGCCAATGTGAATCTGGCATA...ACAATCAGTTTCGGGGTGTGACGGCGGGGACGGTGGTGGACAGGTACCAAAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR CAA 90 bp | AGTTCTGCAGGCCTGCCGTTACTGCAACGAAGGACAACCAGCGCTTTTCTGTCTGTCTGTCTGCAGCTGTaGAGGCTGGTACTGGCCAAA | + |
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Preference number: 5 (lower is better) Translates to: SSAGLPLLQRRTTSAFLSVCLQL*RLVLAK Trigger: TTTGGCCAGTACCAGCCTCAACAGCTGCAGACAGAC...AGACAGAAAAGCGCTGGTTGTCCTTCGTTGCAGTAACGGCAGGCCTGCAGAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS-3UTR CAA 90 bp | TTGACTTCAAAAACTGTTTCTCGCCCTCCCTTTCTCCCCTTATCACCTGTAGCAGGCTGGGTGAAGCTGTaGAACGCCAAAGGCAAAACC | + |
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Preference number: 5 (lower is better) Translates to: LTSKTVSRPPFLPLSPVAGWVKL*NAKGKT Trigger: GGTTTTGCCTTTGGCGTTCAACAGCTTCACCCAGCC...TGCTACAGGTGATAAGGGGAGAAAGGGAGGGCGAGAAACAGTTTTTGAAGTCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS CCA 72 bp | GGTGTGGTGGAAGCCGCGGCTGCTGTGGGCTGCACATaGGGAATGACCACTCCAGGCTGCACAAAAGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: GVVEAAAAVGCT*GMTTPGCTKAC Trigger: GCAGGCTTTTGTGCAGCCTGGAGTGGTCATTCCCCATGTGCAGCCCACAGCAGCCGCGGCTTCCACCACACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS TCA 72 bp | TGGAAGCCGCGGCTGCTGTGGGCTGCACATGGGGAATaGCCACTCCAGGCTGCACAAAAGCCTGCGGGTAGA | + |
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Preference number: 6 (lower is better) Translates to: WKPRLLWAAHGE*PLQAAQKPAGR Trigger: TCTACCCGCAGGCTTTTGTGCAGCCTGGAGTGGTCATTCCCCATGTGCAGCCCACAGCAGCCGCGGCTTCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS CCA 72 bp | CGATGTCTCCGAAGACCTCAAAGTACTTGCGCAGGCTaGCGTCGGTGGTGTGGTAGGGCAGCCCTCCCACGA | + |
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Preference number: 6 (lower is better) Translates to: RCLRRPQSTCAG*RRWCGRAALPR Trigger: TCGTGGGAGGGCTGCCCTACCACACCACCGACGCCAGCCTGCGCAAGTACTTTGAGGTCTTCGGAGACATCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS CCA 72 bp | GAGCGTAGGCGGCTCCAGTGTAATCAATGTACGGTGTaGTGGAAGCCGCGGCTGCTGTGGGCTGCACATGGG | + |
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Preference number: 6 (lower is better) Translates to: ERRRLQCNQCTV*WKPRLLWAAHG Trigger: CCCATGTGCAGCCCACAGCAGCCGCGGCTTCCACCACACCGTACATTGATTACACTGGAGCCGCCTACGCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS CCA 72 bp | CGTAGGCGGCTCCAGTGTAATCAATGTACGGTGTGGTaGAAGCCGCGGCTGCTGTGGGCTGCACATGGGGAA | + |
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Preference number: 6 (lower is better) Translates to: RRRLQCNQCTVW*KPRLLWAAHGE Trigger: TTCCCCATGTGCAGCCCACAGCAGCCGCGGCTTCCACCACACCGTACATTGATTACACTGGAGCCGCCTACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS GCA 72 bp | ATGTACGGTGTGGTGGAAGCCGCGGCTGCTGTGGGCTaGACATGGGGAATGACCACTCCAGGCTGCACAAAA | + |
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Preference number: 6 (lower is better) Translates to: MYGVVEAAAAVG*TWGMTTPGCTK Trigger: TTTTGTGCAGCCTGGAGTGGTCATTCCCCATGTGCAGCCCACAGCAGCCGCGGCTTCCACCACACCGTACAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS GCA 72 bp | AGTGTAATCAATGTACGGTGTGGTGGAAGCCGCGGCTaGTGTGGGCTGCACATGGGGAATGACCACTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: SVINVRCGGSRG*CGLHMGNDHSR Trigger: CCTGGAGTGGTCATTCCCCATGTGCAGCCCACAGCAGCCGCGGCTTCCACCACACCGTACATTGATTACACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS CCA 72 bp | GTGGGCGGGGATCCCGAAAGGTCTCTGGATAAGGGCTaGGTGAAGCTGTTGAACGCCAAAGGCAAAACCTGG | + |
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Preference number: 6 (lower is better) Translates to: VGGDPERSLDKG*VKLLNAKGKTW Trigger: CCAGGTTTTGCCTTTGGCGTTCAACAGCTTCACCCAGCCCTTATCCAGAGACCTTTCGGGATCCCCGCCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS TCA 72 bp | AGTATGCCAGATTCACATTGGCCTTCCTACCATCGATaGTGGGGTTGGGATCCTTGCAGGCCCTTTCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: SMPDSHWPSYHR*WGWDPCRPFQR Trigger: CCGCTGAAAGGGCCTGCAAGGATCCCAACCCCATCATCGATGGTAGGAAGGCCAATGTGAATCTGGCATACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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| CDS GCA 72 bp | ACCTGGCTGCATGATTCTTGGTTTTGCTCCCAAGTATaGCAGATTCACATTGGCCTTCCTACCATCGATGAT | + |
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Preference number: 6 (lower is better) Translates to: TWLHDSWFCSQV*QIHIGLPTIDD Trigger: ATCATCGATGGTAGGAAGGCCAATGTGAATCTGGCATACTTGGGAGCAAAACCAAGAATCATGCAGCCAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037923.5 |
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