Pregenerated sensors for RBM22 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024604Ensembl transcript IDs: ENSMUST00000025506.7
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCAAACTTTCTAAGACTGAACAGTCTCCTGCCCAGAGGCAGCGAGTaGGCCACTGCAGACACAGGTGATGTGGATGCTCCAGTCCCAGCT | + |
|
Preference number: 1 (lower is better) Translates to: PNFLRLNSLLPRGSE*ATADTGDVDAPVPA Trigger: AGCTGGGACTGGAGCATCCACATCACCTGTGTCTGCAGTGGCTCACTCGCTGCCTCTGGGCAGGAGACTGTTCAGTCTTAGAAAGTTTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| 3UTR-3UTR GCA 90 bp | ATGGGGACTCCATTGGTCACTCCAGTTCACCCATGTGCGTGTTCCCCACAGAGTCATAGCTGTGCTCTCTaGCCACATCTGAACACATTC | + |
|
Preference number: 2 (lower is better) Translates to: MGTPLVTPVHPCACSPQSHSCAL*PHLNTF Trigger: GAATGTGTTCAGATGTGGGCAGAGAGCACAGCTATG...ACTCTGTGGGGAACACGCACATGGGTGAACTGGAGTGACCAATGGAGTCCCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| 3UTR-3UTR CCA 90 bp | CCATTGGTCACTCCAGTTCACCCATGTGCGTGTTCCCCACAGAGTGGGAAGGGAACAAAGCAAGGGAAATaGTACTTATCCCAGGATTCA | + |
|
Preference number: 2 (lower is better) Translates to: PLVTPVHPCACSPQSGKGTKQGK*YLSQDS Trigger: TGAATCCTGGGATAAGTACCATTTCCCTTGCTTTGT...TCCCTTCCCACTCTGTGGGGAACACGCACATGGGTGAACTGGAGTGACCAATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| 3UTR TCA 72 bp | CTAAGACTGAACAGTCTCCTGCCCAGAGGCAGCGAGTaGGCCACTGCAGACACAGGTGATGTGGATGCTCCA | + |
|
Preference number: 3 (lower is better) Translates to: LRLNSLLPRGSE*ATADTGDVDAP Trigger: TGGAGCATCCACATCACCTGTGTCTGCAGTGGCTCACTCGCTGCCTCTGGGCAGGAGACTGTTCAGTCTTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| 3UTR GCA 72 bp | GATGGGGACTCCATTGGTCACTCCAGTTCACCCATGTaGGTGTTCCCCACAGAGTGGGAAGGGATCAGACAT | + |
|
Preference number: 3 (lower is better) Translates to: DGDSIGHSSSPM*VFPTEWEGIRH Trigger: ATGTCTGATCCCTTCCCACTCTGTGGGGAACACGCACATGGGTGAACTGGAGTGACCAATGGAGTCCCCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| 3UTR CCA 72 bp | CCCAGCTGCAGGCAGGCAGACAGTCTCCCAGTCAAATaGACTCTAAGGCTCTTCTTTTCAGTTTGTCAAAGT | + |
|
Preference number: 3 (lower is better) Translates to: PSCRQADSLPVK*TLRLFFSVCQS Trigger: ACTTTGACAAACTGAAAAGAAGAGCCTTAGAGTCCATTTGACTGGGAGACTGTCTGCCTGCCTGCAGCTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR TCA 90 bp | GAGGCAGCGAGTGAGCCACTGCAGACACAGGTGATGTGGATGCTCCAGTCCCAGGTCCTGGAGCCCTCATaGAAGGAGGGGGTGGTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: EAASEPLQTQVMWMLQSQVLEPS*KEGVVP Trigger: TGGGACCACCCCCTCCTTTCATGAGGGCTCCAGGAC...CTGGGACTGGAGCATCCACATCACCTGTGTCTGCAGTGGCTCACTCGCTGCCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR GCA 90 bp | ATTGGTCACTCCAGTTCACCCATGTGCGTGTTCCCCACAGAGTGGGAAGGGATCCGCCTCCTCTTCTGCTaGAGGAGGTGGAGGCAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: IGHSSSPMCVFPTEWEGIRLLFC*RRWRQS Trigger: GCTCTGCCTCCACCTCCTGCAGCAGAAGAGGAGGCG...GATCCCTTCCCACTCTGTGGGGAACACGCACATGGGTGAACTGGAGTGACCAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR CCA 90 bp | CCATTGGTCACTCCAGTTCACCCATGTGCGTGTTCCCCACAGAGTGGGAAGGGATGCCTGGTGGCGAACTaGATGAAGGCACACTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: PLVTPVHPCACSPQSGKGCLVAN*MKAHCC Trigger: GCAGCAGTGTGCCTTCATCCAGTTCGCCACCAGGCA...TCCCTTCCCACTCTGTGGGGAACACGCACATGGGTGAACTGGAGTGACCAATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR CCA 90 bp | CAAGGGAAATGGTACTTATCCCAGGATTCATTTACTGGGACTTTAGAGCGCCCTACCTGGGGGTGGCGGTaGGGCGATCCCAGGGGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: QGKWYLSQDSFTGTLERPTWGWR*GDPRGW Trigger: CCACCCCCTGGGATCGCCCCACCGCCACCCCCAGGT...AGGGCGCTCTAAAGTCCCAGTAAATGAATCCTGGGATAAGTACCATTTCCCTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR TCA 90 bp | ATTGGTCACTCCAGTTCACCCATGTGCGTGTTCCCCACAGAGTGGGAAGGGATCCACTTGGGGGCAGGTTaGAGTAGTTGGCAGACGCCT | + |
|
Preference number: 4 (lower is better) Translates to: IGHSSSPMCVFPTEWEGIHLGAG*SSWQTP Trigger: AGGCGTCTGCCAACTACTTCAACCTGCCCCCAAGTG...GATCCCTTCCCACTCTGTGGGGAACACGCACATGGGTGAACTGGAGTGACCAAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR TCA 90 bp | ATGGGGACTCCATTGGTCACTCCAGTTCACCCATGTGCGTGTTCCCCACAGAGTGCCTCTGCACAACAGTaGTGGTGCGGATCTCTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: MGTPLVTPVHPCACSPQSASAQQ*WCGSLQ Trigger: TTGGAGAGATCCGCACCATCACTGTTGTGCAGAGGC...ACTCTGTGGGGAACACGCACATGGGTGAACTGGAGTGACCAATGGAGTCCCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR CCA 90 bp | ATGGGGACTCCATTGGTCACTCCAGTTCACCCATGTGCGTGTTCCCCACAGAGTCATGAAAGGAGGGGGTaGTCCCATGGGGTGGAACAT | + |
|
Preference number: 4 (lower is better) Translates to: MGTPLVTPVHPCACSPQSHERRG*SHGVEH Trigger: ATGTTCCACCCCATGGGACCACCCCCTCCTTTCATG...ACTCTGTGGGGAACACGCACATGGGTGAACTGGAGTGACCAATGGAGTCCCCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR CCA 90 bp | GTGTTCCCCACAGAGTGGGAAGGGATCAGACATAAGGCTCTTAGTACTGCTATAGGTCCAGGCGGGGCATaGTCGAGGCCCGCTTTAGAA | + |
|
Preference number: 4 (lower is better) Translates to: VFPTEWEGIRHKALSTAIGPGGA*SRPALE Trigger: TTCTAAAGCGGGCCTCGACCATGCCCCGCCTGGACC...TATAGCAGTACTAAGAGCCTTATGTCTGATCCCTTCCCACTCTGTGGGGAACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR GCA 90 bp | GTGTTCCCCACAGAGTGGGAAGGGATCAGACATAAGGCTCTTAGTACTGCTATAAGACGCCTCCTCTTCTaGTGCAGGAGGTGGAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VFPTEWEGIRHKALSTAIRRLLF*CRRWRQ Trigger: CTGCCTCCACCTCCTGCAGCAGAAGAGGAGGCGTCT...TATAGCAGTACTAAGAGCCTTATGTCTGATCCCTTCCCACTCTGTGGGGAACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR TCA 90 bp | CAAGGGAAATGGTACTTATCCCAGGATTCATTTACTGGGACTTTAGAGCGCCCTTGGTCCGGGCCAACTTaGGGAGCATGTCACTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: QGKWYLSQDSFTGTLERPWSGPT*GACHWW Trigger: CCACCAGTGACATGCTCCTCAAGTTGGCCCGGACCA...AGGGCGCTCTAAAGTCCCAGTAAATGAATCCTGGGATAAGTACCATTTCCCTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR CCA 90 bp | GTGTTCCCCACAGAGTGGGAAGGGATCAGACATAAGGCTCTTAGTACTGCTATAACGTCTGACACAGAATaGGGAAGTCCGCGTCCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: VFPTEWEGIRHKALSTAITSDTE*GSPRPP Trigger: GGGAGGACGCGGACTTCCCCATTCTGTGTCAGACGT...TATAGCAGTACTAAGAGCCTTATGTCTGATCCCTTCCCACTCTGTGGGGAACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR CCA 90 bp | ATGGGGACTCCATTGGTCACTCCAGTTCACCCATGTGCGTGTTCCCCACAGAGTCATCACGAACCTGGATaGGTAGGCCATATTCAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: MGTPLVTPVHPCACSPQSHHEPG*VGHIQG Trigger: ACCTTGAATATGGCCTACCCATCCAGGTTCGTGATG...ACTCTGTGGGGAACACGCACATGGGTGAACTGGAGTGACCAATGGAGTCCCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR TCA 90 bp | CAAGGGAAATGGTACTTATCCCAGGATTCATTTACTGGGACTTTAGAGCGCCCTTGGTGGCGAACTGGATaGAGGCACACTGCTGCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: QGKWYLSQDSFTGTLERPWWRTG*RHTAAS Trigger: AGAGGCAGCAGTGTGCCTTCATCCAGTTCGCCACCA...AGGGCGCTCTAAAGTCCCAGTAAATGAATCCTGGGATAAGTACCATTTCCCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR CCA 90 bp | CAAGGGAAATGGTACTTATCCCAGGATTCATTTACTGGGACTTTAGAGCGCCCTGGTGGTCCCATGGGGTaGAACATGTGTGGTCCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: QGKWYLSQDSFTGTLERPGGPMG*NMCGPK Trigger: TTTTGGACCACACATGTTCCACCCCATGGGACCACC...AGGGCGCTCTAAAGTCCCAGTAAATGAATCCTGGGATAAGTACCATTTCCCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR CCA 90 bp | CAAGGGAAATGGTACTTATCCCAGGATTCATTTACTGGGACTTTAGAGCGCCCTAGAAGGGTAGTGGATTaGTCCTGGAGCCCTCATGAA | + |
|
Preference number: 4 (lower is better) Translates to: QGKWYLSQDSFTGTLERPRRVVD*SWSPHE Trigger: TTCATGAGGGCTCCAGGACCAATCCACTACCCTTCT...AGGGCGCTCTAAAGTCCCAGTAAATGAATCCTGGGATAAGTACCATTTCCCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR CAA 90 bp | GAGGCAGCGAGTGAGCCACTGCAGACACAGGTGATGTGGATGCTCCAGTCCCAGCTTCCCCACTTGACATaGAGCCTCCGGCCATTCACG | + |
|
Preference number: 5 (lower is better) Translates to: EAASEPLQTQVMWMLQSQLPHLT*SLRPFT Trigger: CGTGAATGGCCGGAGGCTCAATGTCAAGTGGGGAAG...CTGGGACTGGAGCATCCACATCACCTGTGTCTGCAGTGGCTCACTCGCTGCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS-3UTR CAA 90 bp | CAAGGGAAATGGTACTTATCCCAGGATTCATTTACTGGGACTTTAGAGCGCCCTGCCCGCTTTAGAAGCTaGTCAGCCACGGGGTCGTTG | + |
|
Preference number: 5 (lower is better) Translates to: QGKWYLSQDSFTGTLERPARFRS*SATGSL Trigger: CAACGACCCCGTGGCTGACAAGCTTCTAAAGCGGGC...AGGGCGCTCTAAAGTCCCAGTAAATGAATCCTGGGATAAGTACCATTTCCCTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||
| CDS CCA 72 bp | ATGTCATCTTTAAATGATAATCCTGCATCACGAACCTaGATGGGTAGGCCATATTCAAGGTCTAACAGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: MSSLNDNPASRT*MGRPYSRSNRQ Trigger: CTGCCTGTTAGACCTTGAATATGGCCTACCCATCCAGGTTCGTGATGCAGGATTATCATTTAAAGATGACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025506.7 |
||