Pregenerated sensors for RBM17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037197Ensembl transcript IDs: ENSMUST00000040314.12
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | AGTTTCAGTGTCCACCAGCCATGGACACAACAGCCATaGCTGTGTCATTGTTCAGTCTGTAGCTCATGTAAG | + |
|
Preference number: 3 (lower is better) Translates to: SFSVHQPWTQQP*LCHCSVCSSCK Trigger: CTTACATGAGCTACAGACTGAACAATGACACAGGCATGGCTGTTGTGTCCATGGCTGGTGGACACTGAAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR CCA 90 bp | CAGTGTCCACCAGCCATGGACACAACAGCCATGCCTGTGTCATTGTTCAGTCTGGTTGCTGGGGCCTGTTaGAGATCTTGGTCTGTCCGG | + |
|
Preference number: 4 (lower is better) Translates to: QCPPAMDTTAMPVSLFSLVAGAC*RSWSVR Trigger: CCGGACAGACCAAGATCTCCAACAGGCCCCAGCAAC...CAGACTGAACAATGACACAGGCATGGCTGTTGTGTCCATGGCTGGTGGACACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR TCA 90 bp | AGCCATGCCTGTGTCATTGTTCAGTCTGTAGCTCATGTAAGGATCAAGGAGGTGCTTTGGCTCTTGGCCTaGGTGAGCGCCGCCTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: SHACVIVQSVAHVRIKEVLWLLA*VSAAFF Trigger: GAAGAAGGCGGCGCTCACTCAGGCCAAGAGCCAAAG...CACCTCCTTGATCCTTACATGAGCTACAGACTGAACAATGACACAGGCATGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR TCA 90 bp | AGCCATGCCTGTGTCATTGTTCAGTCTGTAGCTCATGTAAGGATCAAGGAGGTGAGCCCAGCTGCCACGTaGGGTGGTGTGTCTGCAATC | + |
|
Preference number: 4 (lower is better) Translates to: SHACVIVQSVAHVRIKEVSPAAT*GGVSAI Trigger: GATTGCAGACACACCACCTCACGTGGCAGCTGGGCT...CACCTCCTTGATCCTTACATGAGCTACAGACTGAACAATGACACAGGCATGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR CCA 90 bp | ACACAACAGCCATGCCTGTGTCATTGTTCAGTCTGTAGCTCATGTAAGGATCAAACGTCGGTGGGGCGATaGCAGCTCCTCCCATACTTC | + |
|
Preference number: 4 (lower is better) Translates to: TQQPCLCHCSVCSSCKDQTSVGR*QLLPYF Trigger: GAAGTATGGGAGGAGCTGCCATCGCCCCACCGACGT...TTGATCCTTACATGAGCTACAGACTGAACAATGACACAGGCATGGCTGTTGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR TCA 90 bp | ACATATATTTTAGAAGTCCATCCAAGAGTTTCAGTGTCCACCAGCCATGGACACTCGCATCCCCCACAATaGTCTTGCCGCCACGCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: TYILEVHPRVSVSTSHGHSHPPQ*SCRHAC Trigger: GCAAGCGTGGCGGCAAGATCATTGTGGGGGATGCGA...GTGTCCATGGCTGGTGGACACTGAAACTCTTGGATGGACTTCTAAAATATATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR TCA 90 bp | CACAACAGCCATGCCTGTGTCATTGTTCAGTCTGTAGCTCATGTAAGGATCAAGTTCTTGGATGCATCCTaGGCCTCGCCCTTCTCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: HNSHACVIVQSVAHVRIKFLDAS*ASPFSV Trigger: GACAGAGAAGGGCGAGGCTCAGGATGCATCCAAGAA...CTTGATCCTTACATGAGCTACAGACTGAACAATGACACAGGCATGGCTGTTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR CCA 90 bp | GGACACAACAGCCATGCCTGTGTCATTGTTCAGTCTGTAGCTCATGTAAGGATCTGCCGCTCTTCTCTCTaGCGCTTCACCACTTTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: GHNSHACVIVQSVAHVRICRSSL*RFTTFS Trigger: TGAGAAAGTGGTGAAGCGCCAGAGAGAAGAGCGGCA...GATCCTTACATGAGCTACAGACTGAACAATGACACAGGCATGGCTGTTGTGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR GCA 90 bp | AGGGATCCATCAACATATATTTTAGAAGTCCATCCAAGAGTTTCAGTGTCCACCCTTTCCAGCTCCCGCTaGCTCTGCCGCTCTTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: RDPSTYILEVHPRVSVSTLSSSR*LCRSSL Trigger: GAGAGAAGAGCGGCAGAGGCAGCGGGAGCTGGAAAG...GGTGGACACTGAAACTCTTGGATGGACTTCTAAAATATATGTTGATGGATCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR GCA 90 bp | GGATCCATCAACATATATTTTAGAAGTCCATCCAAGAGTTTCAGTGTCCACCAGGCAGTACTCAGCCCTTaGTCGTGTTTCCCCAGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: GSINIYFRSPSKSFSVHQAVLSP*SCFPSP Trigger: GGGACTGGGGAAACACGAGCAAGGGCTGAGTACTGC...CTGGTGGACACTGAAACTCTTGGATGGACTTCTAAAATATATGTTGATGGATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR GCA 90 bp | CACAACAGCCATGCCTGTGTCATTGTTCAGTCTGTAGCTCATGTAAGGATCAAGCTTCTCCACAGACAATaGAGTACTCAGCCCTTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: HNSHACVIVQSVAHVRIKLLHRQ*STQPLL Trigger: GAGCAAGGGCTGAGTACTGCATTGTCTGTGGAGAAG...CTTGATCCTTACATGAGCTACAGACTGAACAATGACACAGGCATGGCTGTTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR TCA 90 bp | TTTCAGTGTCCACCAGCCATGGACACAACAGCCATGCCTGTGTCATTGTTCAGTCACAGCTTTAATTGCTaGTTCGACTCTCTCAAATTC | + |
|
Preference number: 4 (lower is better) Translates to: FQCPPAMDTTAMPVSLFSHSFNC*FDSLKF Trigger: GAATTTGAGAGAGTCGAATCAGCAATTAAAGCTGTG...ACTGAACAATGACACAGGCATGGCTGTTGTGTCCATGGCTGGTGGACACTGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR CCA 90 bp | GGATCCATCAACATATATTTTAGAAGTCCATCCAAGAGTTTCAGTGTCCACCAGGTCTTGAAAACCCACTaGCTTCGTGTCTGTCTTTAC | + |
|
Preference number: 4 (lower is better) Translates to: GSINIYFRSPSKSFSVHQVLKTH*LRVCLY Trigger: GTAAAGACAGACACGAAGCCAGTGGGTTTTCAAGAC...CTGGTGGACACTGAAACTCTTGGATGGACTTCTAAAATATATGTTGATGGATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS-3UTR CAA 90 bp | ACATATATTTTAGAAGTCCATCCAAGAGTTTCAGTGTCCACCAGCCATGGACACTTAGCAAGGAAGGAGTaGCTGGGGCCTGTTGGAGAT | + |
|
Preference number: 5 (lower is better) Translates to: TYILEVHPRVSVSTSHGHLARKE*LGPVGD Trigger: ATCTCCAACAGGCCCCAGCAACTCCTTCCTTGCTAA...GTGTCCATGGCTGGTGGACACTGAAACTCTTGGATGGACTTCTAAAATATATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||
| CDS CCA 72 bp | CATCAGAATCAGGGTCTGGTCGTCTTGAAAACCCACTaGCTTCGTGTCTGTCTTTACGCCTCTTTTCTCTTT | + |
|
Preference number: 6 (lower is better) Translates to: HQNQGLVVLKTH*LRVCLYASFLF Trigger: AAAGAGAAAAGAGGCGTAAAGACAGACACGAAGCCAGTGGGTTTTCAAGACGACCAGACCCTGATTCTGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040314.12 |
||