RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RBM14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006456

Ensembl transcript IDs: ENSMUST00000006625.8, ENSMUST00000113793.4, ENSMUST00000180008.2

Found 293 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCTCTCTCCCTTCCTGTGGTGCCCCATCCCCAGGATGGCCCTACATaGGGCGCTGGTAGCCAGAGTGCATCTGAGCTGCCCGCAGGTAAT +
Preference number: 1 (lower is better)
Translates to: SLSLPVVPHPQDGPT*GAGSQSASELPAGN
Trigger: ATTACCTGCGGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCCATCCTGGGGATGGGGCACCACAGGAAGGGAGAGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR GCA 90 bp CATCTGAGCTGCCCGCAGGTAATCATTATAGGAGCCCGAATAGCGTaGGTAATCGGAATGGGCATCGGGCAGGCGACGGTAATCCAGCGA +
Preference number: 1 (lower is better)
Translates to: HLSCPQVIIIGARIA*VIGMGIGQATVIQR
Trigger: TCGCTGGATTACCGTCGCCTGCCCGATGCCCATTCCGATTACGCACGCTATTCGGGCTCCTATAATGATTACCTGCGGGCAGCTCAGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR GCA 90 bp AGGATGGCCCTACATGCGGCGCTGGTAGCCAGAGTGCATCTGAGCTaGCCGCAGGTAATCATTATAGGAGCCCGAATAGCGTGCGTAATC +
Preference number: 1 (lower is better)
Translates to: RMALHAALVARVHLS*PQVIIIGARIACVI
Trigger: GATTACGCACGCTATTCGGGCTCCTATAATGATTACCTGCGGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCCATCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CCA 90 bp ATCAACAGAACGACGGACGAAAGTAGGGTCCCCAACTTCCCAGGGTaGACGCACCTCATAAGCTTGCCTTCAGCCAGTGAGTGCCAAAAG +
Preference number: 1 (lower is better)
Translates to: INRTTDESRVPNFPG*THLISLPSASECQK
Trigger: CTTTTGGCACTCACTGGCTGAAGGCAAGCTTATGAGGTGCGTCCACCCTGGGAAGTTGGGGACCCTACTTTCGTCCGTCGTTCTGTTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR TCA 90 bp CACATGATAGAGGGAGGGAATGAAAAGCCACCATTGGGAGAGGTATaGGAGAGGGTGGTGATAACCTGGGTCTGCACCCTACCCTACCTC +
Preference number: 1 (lower is better)
Translates to: HMIEGGNEKPPLGEV*ERVVITWVCTLPYL
Trigger: GAGGTAGGGTAGGGTGCAGACCCAGGTTATCACCACCCTCTCTCATACCTCTCCCAATGGTGGCTTTTCATTCCCTCCCTCTATCATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR CCA 90 bp CCCTGTCAGAAGGCTCATCATACTATCCAGGTCAAGGAACCAACCTaGGTTCTTCAGGTCAGTGGGAAACCAAGCCCTCTGCTGAAGCTC +
Preference number: 1 (lower is better)
Translates to: PCQKAHHTIQVKEPT*VLQVSGKPSPLLKL
Trigger: GAGCTTCAGCAGAGGGCTTGGTTTCCCACTGACCTGAAGAACCCAGGTTGGTTCCTTGACCTGGATAGTATGATGAGCCTTCTGACAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CCA 90 bp CCCAAACAAGCTATTCCCACTCATGGGCCCTGCACAAAAAGACCTTaGTTTATCAACAGAACGACGGACGAAAGTAGGGTCCCCAACTTC +
Preference number: 1 (lower is better)
Translates to: PKQAIPTHGPCTKRP*FINRTTDESRVPNF
Trigger: GAAGTTGGGGACCCTACTTTCGTCCGTCGTTCTGTTGATAAACCAAGGTCTTTTTGTGCAGGGCCCATGAGTGGGAATAGCTTGTTTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CCA 90 bp TGCCATTGGGGACAGGGAGGGTATACCAGATTTGTCTCAAACAGTTaGTGTCCCTGTCAGAAGGCTCATCATACTATCCAGGTCAAGGAA +
Preference number: 1 (lower is better)
Translates to: CHWGQGGYTRFVSNS*CPCQKAHHTIQVKE
Trigger: TTCCTTGACCTGGATAGTATGATGAGCCTTCTGACAGGGACACCAACTGTTTGAGACAAATCTGGTATACCCTCCCTGTCCCCAATGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CCA 90 bp CAAGGTGAGTCTGGTCTACATTCCCAAACAAGCTATTCCCACTCATaGGCCCTGCACAAAAAGACCTTGGTTTATCAACAGAACGACGGA +
Preference number: 1 (lower is better)
Translates to: QGESGLHSQTSYSHS*ALHKKTLVYQQNDG
Trigger: TCCGTCGTTCTGTTGATAAACCAAGGTCTTTTTGTGCAGGGCCCATGAGTGGGAATAGCTTGTTTGGGAATGTAGACCAGACTCACCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR TCA 90 bp TTTCTTCTAGCTGTCACGTCTTCCTGGATGTCAAACTGGCTCACCTaGCAGTGCAATCAAGACAATGACAACCAGGTTTCCAAACCACGA +
Preference number: 1 (lower is better)
Translates to: FLLAVTSSWMSNWLT*QCNQDNDNQVSKPR
Trigger: TCGTGGTTTGGAAACCTGGTTGTCATTGTCTTGATTGCACTGTCAGGTGAGCCAGTTTGACATCCAGGAAGACGTGACAGCTAGAAGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR GCA 90 bp AGTCTGGTCTACATTCCCAAACAAGCTATTCCCACTCATGGGCCCTaGACAAAAAGACCTTGGTTTATCAACAGAACGACGGACGAAAGT +
Preference number: 1 (lower is better)
Translates to: SLVYIPKQAIPTHGP*TKRPWFINRTTDES
Trigger: ACTTTCGTCCGTCGTTCTGTTGATAAACCAAGGTCTTTTTGTGCAGGGCCCATGAGTGGGAATAGCTTGTTTGGGAATGTAGACCAGACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR TCA 90 bp TTCCTGGATGTCAAACTGGCTCACCTGACAGTGCAATCAAGACAATaGCAACCAGGTTTCCAAACCACGAATCGCCCCAAGTTTTATTTG +
Preference number: 1 (lower is better)
Translates to: FLDVKLAHLTVQSRQ*QPGFQTTNRPKFYL
Trigger: CAAATAAAACTTGGGGCGATTCGTGGTTTGGAAACCTGGTTGTCATTGTCTTGATTGCACTGTCAGGTGAGCCAGTTTGACATCCAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR GCA 90 bp AGATTTCTAACACCACCTACTTGGAGAGATAGGGAATTGGGACTATaGCAGTCACCATCAGCTAAAACATCAGTGGTAAGCGGGGATTTG +
Preference number: 1 (lower is better)
Translates to: RFLTPPTWRDRELGL*QSPSAKTSVVSGDL
Trigger: CAAATCCCCGCTTACCACTGATGTTTTAGCTGATGGTGACTGGCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR CAA 90 bp AATCGGAATGGGCATCGGGCAGGCGACGGTAATCCAGCGAGGACTTaGTCGGCGAGCGGCGGAACGAAAGCTGCGACTCTGATAAACGGC +
Preference number: 2 (lower is better)
Translates to: NRNGHRAGDGNPART*SASGGTKAATLING
Trigger: GCCGTTTATCAGAGTCGCAGCTTTCGTTCCGCCGCTCGCCGACAAAGTCCTCGCTGGATTACCGTCGCCTGCCCGATGCCCATTCCGATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR CCA 90 bp ATCCCCAGGATGGCCCTACATGCGGCGCTGGTAGCCAGAGTGCATCTGAGCTGCGTCAAGGAACCAACCTaGGTTCTTCAGGTCAGTGGG +
Preference number: 2 (lower is better)
Translates to: IPRMALHAALVARVHLSCVKEPT*VLQVSG
Trigger: CCCACTGACCTGAAGAACCCAGGTTGGTTCCTTGAC...GCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCCATCCTGGGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR CCA 90 bp CATACTATCCAGGTCAAGGAACCAACCTGGGTTCTTCAGGTCAGTGGGAAACCAGACAGGCAGGGCCCCTaGACTGCTGGCATAGCTGGG +
Preference number: 2 (lower is better)
Translates to: HTIQVKEPTWVLQVSGKPDRQGP*TAGIAG
Trigger: CCCAGCTATGCCAGCAGTCCAGGGGCCCTGCCTGTC...TGGTTTCCCACTGACCTGAAGAACCCAGGTTGGTTCCTTGACCTGGATAGTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CAA 90 bp AGACAGTTGAGGGCAGGGCTCCAGGTAGGCCTAGGGGAGATGCCATaGGGGACAGGGAGGGTATACCAGATTTGTCTCAAACAGTTGGTG +
Preference number: 2 (lower is better)
Translates to: RQLRAGLQVGLGEMP*GTGRVYQICLKQLV
Trigger: CACCAACTGTTTGAGACAAATCTGGTATACCCTCCCTGTCCCCAATGGCATCTCCCCTAGGCCTACCTGGAGCCCTGCCCTCAACTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR CCA 90 bp ATCCCCAGGATGGCCCTACATGCGGCGCTGGTAGCCAGAGTGCATCTGAGCTGCCTAACACCACCTACTTaGAGAGATAGGGAATTGGGA +
Preference number: 2 (lower is better)
Translates to: IPRMALHAALVARVHLSCLTPPT*RDRELG
Trigger: TCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAG...GCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCCATCCTGGGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR CCA 90 bp GGGAGAGGTATGAGAGAGGGTGGTGATAACCTGGGTCTGCACCCTACCCTACCTGGTTCTTCAGGTCAGTaGGAAACCAAGCCCTCTGCT +
Preference number: 2 (lower is better)
Translates to: GRGMREGGDNLGLHPTLPGSSGQ*ETKPSA
Trigger: AGCAGAGGGCTTGGTTTCCCACTGACCTGAAGAACC...AGGTAGGGTAGGGTGCAGACCCAGGTTATCACCACCCTCTCTCATACCTCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR TCA 90 bp GTGGTAAGCGGGGATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTCCATTGGGAGAGGTATaGGAGAGGGTGGTGATAACC +
Preference number: 2 (lower is better)
Translates to: VVSGDLDTDQLTVPQDLSPLGEV*ERVVIT
Trigger: GGTTATCACCACCCTCTCTCATACCTCTCCCAATGG...ACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR-3UTR CCA 90 bp GTGGTAAGCGGGGATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTTTCTGGGGAGATGGCTaGGTAGAGGGAAAACCACAG +
Preference number: 2 (lower is better)
Translates to: VVSGDLDTDQLTVPQDLSFWGDG*VEGKPQ
Trigger: CTGTGGTTTTCCCTCTACCCAGCCATCTCCCCAGAA...ACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR-3UTR TCA 90 bp GGCCCTACATGCGGCGCTGGTAGCCAGAGTGCATCTGAGCTGCCCGCAGGTAATAGTGGGAAAAATCTATaGGCCAATCCTGCAAAATGT +
Preference number: 2 (lower is better)
Translates to: GPTCGAGSQSASELPAGNSGKNL*ANPAKC
Trigger: ACATTTTGCAGGATTGGCTCATAGATTTTTCCCACT...ATTACCTGCGGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR GCA 90 bp TGCAATCAAGACAATGACAACCAGGTTTCCAAACCACGAATCGCCCCAAGTTTTGCAGGGCCCCTGGACTaGTGGCATAGCTGGGCACAG +
Preference number: 2 (lower is better)
Translates to: CNQDNDNQVSKPRIAPSFAGPLD*WHSWAQ
Trigger: CTGTGCCCAGCTATGCCAGCAGTCCAGGGGCCCTGC...AAAACTTGGGGCGATTCGTGGTTTGGAAACCTGGTTGTCATTGTCTTGATTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR-3UTR CCA 90 bp TGCAATCAAGACAATGACAACCAGGTTTCCAAACCACGAATCGCCCCAAGTTTTGACAGGCAGGGCCCCTaGACTGCTGGCATAGCTGGG +
Preference number: 2 (lower is better)
Translates to: CNQDNDNQVSKPRIAPSFDRQGP*TAGIAG
Trigger: CCCAGCTATGCCAGCAGTCCAGGGGCCCTGCCTGTC...AAAACTTGGGGCGATTCGTGGTTTGGAAACCTGGTTGTCATTGTCTTGATTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR-3UTR CCA 90 bp CTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACCAAGGGAGGGGCCAATaGCTCCTGTTTCCCTCCCAT +
Preference number: 2 (lower is better)
Translates to: LASKKKNAPPDISCRLYHQGRGQ*LLFPSH
Trigger: ATGGGAGGGAAACAGGAGCCATTGGCCCCTCCCTTG...GTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR TCA 90 bp CCCACTCATGGGCCCTGCACAAAAAGACCTTGGTTTATCAACAGAACGACGGACCCATTGGGAGAGGTATaGGAGAGGGTGGTGATAACC +
Preference number: 2 (lower is better)
Translates to: PTHGPCTKRPWFINRTTDPLGEV*ERVVIT
Trigger: GGTTATCACCACCCTCTCTCATACCTCTCCCAATGG...GTCCGTCGTTCTGTTGATAAACCAAGGTCTTTTTGTGCAGGGCCCATGAGTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR CCA 90 bp GTCCAACCACTTGATCTGAACTCTCTAGTCCCAAAGATGGCATGCTATTTAAGAGGGCCCCTGGACTGCTaGCATAGCTGGGCACAGAGG +
Preference number: 2 (lower is better)
Translates to: VQPLDLNSLVPKMACYLRGPLDC*HSWAQR
Trigger: CCTCTGTGCCCAGCTATGCCAGCAGTCCAGGGGCCC...TCTTAAATAGCATGCCATCTTTGGGACTAGAGAGTTCAGATCAAGTGGTTGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR CAA 90 bp CTATGCCAGTCACCATCAGCTAAAACATCAGTGGTAAGCGGGGATTaGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTCTCAAC +
Preference number: 2 (lower is better)
Translates to: LCQSPSAKTSVVSGD*DTDQLTVPQDLSLN
Trigger: GTTGAGACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCACTGATGTTTTAGCTGATGGTGACTGGCATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR CAA 90 bp GAAAGTAGGGTCCCCAACTTCCCAGGGTGGACGCACCTCATAAGCTaGCCTTCAGCCAGTGAGTGCCAAAAGGACTACTTTCTTTCACAT +
Preference number: 2 (lower is better)
Translates to: ESRVPNFPGWTHLIS*PSASECQKDYFLSH
Trigger: ATGTGAAAGAAAGTAGTCCTTTTGGCACTCACTGGCTGAAGGCAAGCTTATGAGGTGCGTCCACCCTGGGAAGTTGGGGACCCTACTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CAA 90 bp AGGCCTAGGGGAGATGCCATTGGGGACAGGGAGGGTATACCAGATTaGTCTCAAACAGTTGGTGTCCCTGTCAGAAGGCTCATCATACTA +
Preference number: 2 (lower is better)
Translates to: RPRGDAIGDREGIPD*SQTVGVPVRRLIIL
Trigger: TAGTATGATGAGCCTTCTGACAGGGACACCAACTGTTTGAGACAAATCTGGTATACCCTCCCTGTCCCCAATGGCATCTCCCCTAGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR TCA 90 bp GGAACGAAAGCTGCGACTCTGATAAACGGCGGTAATCAGAGAGCTCGGCTAAACAGCAAGATGTGCTGCTaGGGCAAAGAAACAAAGCAG +
Preference number: 2 (lower is better)
Translates to: GTKAATLINGGNQRARLNSKMCC*GKETKQ
Trigger: CTGCTTTGTTTCTTTGCCTCAGCAGCACATCTTGCT...GTTTAGCCGAGCTCTCTGATTACCGCCGTTTATCAGAGTCGCAGCTTTCGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR TCA 90 bp TTCCACACCCACTCTGGGTCTTCAGGCTGCCTTTCTTCTAGCTGTCACGTCTTCTCAAACTGGCTCACCTaGCAGTGCAATCAAGACAAT +
Preference number: 2 (lower is better)
Translates to: FHTHSGSSGCLSSSCHVFSNWLT*QCNQDN
Trigger: ATTGTCTTGATTGCACTGTCAGGTGAGCCAGTTTGA...GAAGACGTGACAGCTAGAAGAAAGGCAGCCTGAAGACCCAGAGTGGGTGTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR-3UTR TCA 90 bp GGAGGGTATACCAGATTTGTCTCAAACAGTTGGTGTCCCTGTCAGAAGGCTCATCCAAACCAGCCAAGGTaGGTCTGGTCTACATTCCCA +
Preference number: 2 (lower is better)
Translates to: GGYTRFVSNSWCPCQKAHPNQPR*VWSTFP
Trigger: TGGGAATGTAGACCAGACTCACCTTGGCTGGTTTGG...ATGAGCCTTCTGACAGGGACACCAACTGTTTGAGACAAATCTGGTATACCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CAA 90 bp ATGCCATTGGGGACAGGGAGGGTATACCAGATTTGTCTCAAACAGTaGGTGTCCCTGTCAGAAGGCTCATCATACTATCCAGGTCAAGGA +
Preference number: 2 (lower is better)
Translates to: MPLGTGRVYQICLKQ*VSLSEGSSYYPGQG
Trigger: TCCTTGACCTGGATAGTATGATGAGCCTTCTGACAGGGACACCAACTGTTTGAGACAAATCTGGTATACCCTCCCTGTCCCCAATGGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR TCA 90 bp TGCCTTTCTTCTAGCTGTCACGTCTTCCTGGATGTCAAACTGGCTCACCTGACAAGCAAGATGTGCTGCTaGGGCAAAGAAACAAAGCAG +
Preference number: 2 (lower is better)
Translates to: CLSSSCHVFLDVKLAHLTSKMCC*GKETKQ
Trigger: CTGCTTTGTTTCTTTGCCTCAGCAGCACATCTTGCT...TGTCAGGTGAGCCAGTTTGACATCCAGGAAGACGTGACAGCTAGAAGAAAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR-3UTR CCA 90 bp CTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACATGAAAAGCCACCATTaGGAGAGGTATGAGAGAGGG +
Preference number: 2 (lower is better)
Translates to: LASKKKNAPPDISCRLYHMKSHH*ERYERG
Trigger: CCCTCTCTCATACCTCTCCCAATGGTGGCTTTTCAT...GTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR-3UTR CCA 90 bp ACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCCAGTCACCATCAGCTATGAAAAGCCACCATTaGGAGAGGTATGAGAGAGGG +
Preference number: 2 (lower is better)
Translates to: TPPTWRDRELGLCQSPSAMKSHH*ERYERG
Trigger: CCCTCTCTCATACCTCTCCCAATGGTGGCTTTTCAT...AGCTGATGGTGACTGGCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR-3UTR CCA 90 bp TTCCCACTCATGGGCCCTGCACAAAAAGACCTTGGTTTATCAACAGAACGACGGCCACCTAAATCCCAATaGCCAGAACTGTTCAGACAC +
Preference number: 2 (lower is better)
Translates to: FPLMGPAQKDLGLSTERRPPKSQ*PELFRH
Trigger: GTGTCTGAACAGTTCTGGCCATTGGGATTTAGGTGG...CCGTCGTTCTGTTGATAAACCAAGGTCTTTTTGTGCAGGGCCCATGAGTGGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR GCA 90 bp CATACTATCCAGGTCAAGGAACCAACCTGGGTTCTTCAGGTCAGTGGGAAACCACCTTCAGCCAGTGAGTaGCAAAAGGACTACTTTCTT +
Preference number: 2 (lower is better)
Translates to: HTIQVKEPTWVLQVSGKPPSASE*QKDYFL
Trigger: AAGAAAGTAGTCCTTTTGGCACTCACTGGCTGAAGG...TGGTTTCCCACTGACCTGAAGAACCCAGGTTGGTTCCTTGACCTGGATAGTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR CCA 90 bp TGCAATCAAGACAATGACAACCAGGTTTCCAAACCACGAATCGCCCCAAGTTTTTTCTGGGGAGATGGCTaGGTAGAGGGAAAACCACAG +
Preference number: 2 (lower is better)
Translates to: CNQDNDNQVSKPRIAPSFFWGDG*VEGKPQ
Trigger: CTGTGGTTTTCCCTCTACCCAGCCATCTCCCCAGAA...AAAACTTGGGGCGATTCGTGGTTTGGAAACCTGGTTGTCATTGTCTTGATTGCA
48% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR-3UTR CCA 90 bp GCAGGTAATCATTATAGGAGCCCGAATAGCGTGCGTAATCGGAATGGGCATCGGGGATCCTTCAGACAGTaGGAAAAATCTATGAGCCAA +
Preference number: 2 (lower is better)
Translates to: AGNHYRSPNSVRNRNGHRGSFRQ*EKSMSQ
Trigger: TTGGCTCATAGATTTTTCCCACTGTCTGAAGGATCC...CCGATGCCCATTCCGATTACGCACGCTATTCGGGCTCCTATAATGATTACCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR TCA 90 bp GAATTAAGATTTCTAACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCAACCAAGCCCTCTGCTaGAGCTCCCTTCCAAACCAG +
Preference number: 2 (lower is better)
Translates to: ELRFLTPPTWRDRELGLCNQALC*SSLPNQ
Trigger: CTGGTTTGGAAGGGAGCTTCAGCAGAGGGCTTGGTT...GCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCTTAATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR CCA 90 bp GAATTAAGATTTCTAACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCCCCAACTTCCCAGGGTaGACGCACCTCATAAGCTTG +
Preference number: 2 (lower is better)
Translates to: ELRFLTPPTWRDRELGLCPNFPG*THLISL
Trigger: CAAGCTTATGAGGTGCGTCCACCCTGGGAAGTTGGG...GCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCTTAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CAA 90 bp TCTAGTCCCAAAGATGGCATGCTATTTAAGATGAGCTTAATTCCATaGGTCGCCAGGAAACCATTCCAATCCCCACACTCAAGCACCCTT +
Preference number: 2 (lower is better)
Translates to: SSPKDGMLFKMSLIP*VARKPFQSPHSSTL
Trigger: AAGGGTGCTTGAGTGTGGGGATTGGAATGGTTTCCTGGCGACCAATGGAATTAAGCTCATCTTAAATAGCATGCCATCTTTGGGACTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR-3UTR GCA 90 bp AAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACCTCCAAACAAACAAAGCAGGTTACTaGCAAACACAAAAGGGTCCT +
Preference number: 2 (lower is better)
Translates to: KKKNAPPDISCRLYHLQTNKAGY*QTQKGP
Trigger: AGGACCCTTTTGTGTTTGGCAGTAACCTGCTTTGTT...TGTTTGGAGGTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR-3UTR CCA 90 bp GCAATCAAGACAATGACAACCAGGTTTCCAAACCACGAATCGCCCCAAGTTTTAAAGAAATTCCCATTCTaGGGAGATGGCTGGGTAGAG +
Preference number: 2 (lower is better)
Translates to: AIKTMTTRFPNHESPQVLKKFPF*GDGWVE
Trigger: CTCTACCCAGCCATCTCCCCAGAATGGGAATTTCTT...TAAAACTTGGGGCGATTCGTGGTTTGGAAACCTGGTTGTCATTGTCTTGATTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR CAA 90 bp AAAGAATTAAGATTTCTAACACCACCTACTTGGAGAGATAGGGAATaGGGACTATGCCAGTCACCATCAGCTAAAACATCAGTGGTAAGC +
Preference number: 2 (lower is better)
Translates to: KELRFLTPPTWRDRE*GLCQSPSAKTSVVS
Trigger: GCTTACCACTGATGTTTTAGCTGATGGTGACTGGCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCTTAATTCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR GCA 72 bp CTTCCTGTGGTGCCCCATCCCCAGGATGGCCCTACATaGGGCGCTGGTAGCCAGAGTGCATCTGAGCTGCCC +
Preference number: 3 (lower is better)
Translates to: LPVVPHPQDGPT*GAGSQSASELP
Trigger: GGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCCATCCTGGGGATGGGGCACCACAGGAAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR CAA 90 bp CGGAATGGGCATCGGGCAGGCGACGGTAATCCAGCGAGGACTTTGTCGGCGAGCTGGAGAGATAGGGAATaGGGACTATGCCAGTCACCA +
Preference number: 3 (lower is better)
Translates to: RNGHRAGDGNPARTLSASWRDRE*GLCQSP
Trigger: TGGTGACTGGCATAGTCCCAATTCCCTATCTCTCCA...GCTCGCCGACAAAGTCCTCGCTGGATTACCGTCGCCTGCCCGATGCCCATTCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CCA 72 bp ACGACGGACGAAAGTAGGGTCCCCAACTTCCCAGGGTaGACGCACCTCATAAGCTTGCCTTCAGCCAGTGAG +
Preference number: 3 (lower is better)
Translates to: TTDESRVPNFPG*THLISLPSASE
Trigger: CTCACTGGCTGAAGGCAAGCTTATGAGGTGCGTCCACCCTGGGAAGTTGGGGACCCTACTTTCGTCCGTCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR CAA 90 bp GGGAGAGGTATGAGAGAGGGTGGTGATAACCTGGGTCTGCACCCTACCCTACCTGTGGTAAGCGGGGATTaGGACACGGACCAACTGACT +
Preference number: 3 (lower is better)
Translates to: GRGMREGGDNLGLHPTLPVVSGD*DTDQLT
Trigger: AGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCAC...AGGTAGGGTAGGGTGCAGACCCAGGTTATCACCACCCTCTCTCATACCTCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR-3UTR CAA 90 bp CTACATGCGGCGCTGGTAGCCAGAGTGCATCTGAGCTGCCCGCAGGTAATCATTGTGGTAAGCGGGGATTaGGACACGGACCAACTGACT +
Preference number: 3 (lower is better)
Translates to: LHAALVARVHLSCPQVIIVVSGD*DTDQLT
Trigger: AGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCAC...AATGATTACCTGCGGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR CAA 90 bp TCCAGCGAGGACTTTGTCGGCGAGCGGCGGAACGAAAGCTGCGACTCTGATAAAACGCACCTCATAAGCTaGCCTTCAGCCAGTGAGTGC +
Preference number: 3 (lower is better)
Translates to: SSEDFVGERRNESCDSDKTHLIS*PSASEC
Trigger: GCACTCACTGGCTGAAGGCAAGCTTATGAGGTGCGT...TTTATCAGAGTCGCAGCTTTCGTTCCGCCGCTCGCCGACAAAGTCCTCGCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR GCA 72 bp TGCCCGCAGGTAATCATTATAGGAGCCCGAATAGCGTaGGTAATCGGAATGGGCATCGGGCAGGCGACGGTA +
Preference number: 3 (lower is better)
Translates to: CPQVIIIGARIA*VIGMGIGQATV
Trigger: TACCGTCGCCTGCCCGATGCCCATTCCGATTACGCACGCTATTCGGGCTCCTATAATGATTACCTGCGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR GCA 72 bp CTACATGCGGCGCTGGTAGCCAGAGTGCATCTGAGCTaGCCGCAGGTAATCATTATAGGAGCCCGAATAGCG +
Preference number: 3 (lower is better)
Translates to: LHAALVARVHLS*PQVIIIGARIA
Trigger: CGCTATTCGGGCTCCTATAATGATTACCTGCGGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR GCA 72 bp CAAGCACCCTTCCACACCCACTCTGGGTCTTCAGGCTaGCTTTCTTCTAGCTGTCACGTCTTCCTGGATGTC +
Preference number: 3 (lower is better)
Translates to: QAPFHTHSGSSG*LSSSCHVFLDV
Trigger: GACATCCAGGAAGACGTGACAGCTAGAAGAAAGGCAGCCTGAAGACCCAGAGTGGGTGTGGAAGGGTGCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR CCA 72 bp CCAGGTCAAGGAACCAACCTGGGTTCTTCAGGTCAGTaGGAAACCAAGCCCTCTGCTGAAGCTCCCTTCCAA +
Preference number: 3 (lower is better)
Translates to: PGQGTNLGSSGQ*ETKPSAEAPFQ
Trigger: TTGGAAGGGAGCTTCAGCAGAGGGCTTGGTTTCCCACTGACCTGAAGAACCCAGGTTGGTTCCTTGACCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR TCA 72 bp GAGGGAGGGAATGAAAAGCCACCATTGGGAGAGGTATaGGAGAGGGTGGTGATAACCTGGGTCTGCACCCTA +
Preference number: 3 (lower is better)
Translates to: EGGNEKPPLGEV*ERVVITWVCTL
Trigger: TAGGGTGCAGACCCAGGTTATCACCACCCTCTCTCATACCTCTCCCAATGGTGGCTTTTCATTCCCTCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR CCA 72 bp GGCCAGAACTGTTCAGACACTCACCCTCATGACTTTTaGACATCCCATAGAAGTAAGATCAAGGGAGGGGCC +
Preference number: 3 (lower is better)
Translates to: GQNCSDTHPHDF*TSHRSKIKGGA
Trigger: GGCCCCTCCCTTGATCTTACTTCTATGGGATGTCCAAAAGTCATGAGGGTGAGTGTCTGAACAGTTCTGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR TCA 72 bp GTCAAACTGGCTCACCTGACAGTGCAATCAAGACAATaGCAACCAGGTTTCCAAACCACGAATCGCCCCAAG +
Preference number: 3 (lower is better)
Translates to: VKLAHLTVQSRQ*QPGFQTTNRPK
Trigger: CTTGGGGCGATTCGTGGTTTGGAAACCTGGTTGTCATTGTCTTGATTGCACTGTCAGGTGAGCCAGTTTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR TCA 72 bp GCTGTCACGTCTTCCTGGATGTCAAACTGGCTCACCTaGCAGTGCAATCAAGACAATGACAACCAGGTTTCC +
Preference number: 3 (lower is better)
Translates to: AVTSSWMSNWLT*QCNQDNDNQVS
Trigger: GGAAACCTGGTTGTCATTGTCTTGATTGCACTGTCAGGTGAGCCAGTTTGACATCCAGGAAGACGTGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
3UTR TCA 72 bp AGGGTGGACGCACCTCATAAGCTTGCCTTCAGCCAGTaGGTGCCAAAAGGACTACTTTCTTTCACATCCATC +
Preference number: 3 (lower is better)
Translates to: RVDAPHKLAFSQ*VPKGLLSFTSI
Trigger: GATGGATGTGAAAGAAAGTAGTCCTTTTGGCACTCACTGGCTGAAGGCAAGCTTATGAGGTGCGTCCACCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR GCA 72 bp TGGACGCACCTCATAAGCTTGCCTTCAGCCAGTGAGTaGCAAAAGGACTACTTTCTTTCACATCCATCCCAC +
Preference number: 3 (lower is better)
Translates to: WTHLISLPSASE*QKDYFLSHPSH
Trigger: GTGGGATGGATGTGAAAGAAAGTAGTCCTTTTGGCACTCACTGGCTGAAGGCAAGCTTATGAGGTGCGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CCA 72 bp GCTATTCCCACTCATGGGCCCTGCACAAAAAGACCTTaGTTTATCAACAGAACGACGGACGAAAGTAGGGTC +
Preference number: 3 (lower is better)
Translates to: AIPTHGPCTKRP*FINRTTDESRV
Trigger: GACCCTACTTTCGTCCGTCGTTCTGTTGATAAACCAAGGTCTTTTTGTGCAGGGCCCATGAGTGGGAATAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR-3UTR CAA 90 bp AAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACCTCCAAACATGGAGAGATAGGGAATaGGGACTATGCCAGTCACCA +
Preference number: 3 (lower is better)
Translates to: KKKNAPPDISCRLYHLQTWRDRE*GLCQSP
Trigger: TGGTGACTGGCATAGTCCCAATTCCCTATCTCTCCA...TGTTTGGAGGTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR CCA 72 bp GGACAGGGAGGGTATACCAGATTTGTCTCAAACAGTTaGTGTCCCTGTCAGAAGGCTCATCATACTATCCAG +
Preference number: 3 (lower is better)
Translates to: GQGGYTRFVSNS*CPCQKAHHTIQ
Trigger: CTGGATAGTATGATGAGCCTTCTGACAGGGACACCAACTGTTTGAGACAAATCTGGTATACCCTCCCTGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR GCA 72 bp TACATTCCCAAACAAGCTATTCCCACTCATGGGCCCTaGACAAAAAGACCTTGGTTTATCAACAGAACGACG +
Preference number: 3 (lower is better)
Translates to: YIPKQAIPTHGP*TKRPWFINRTT
Trigger: CGTCGTTCTGTTGATAAACCAAGGTCTTTTTGTGCAGGGCCCATGAGTGGGAATAGCTTGTTTGGGAATGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CCA 72 bp TCTGGTCTACATTCCCAAACAAGCTATTCCCACTCATaGGCCCTGCACAAAAAGACCTTGGTTTATCAACAG +
Preference number: 3 (lower is better)
Translates to: SGLHSQTSYSHS*ALHKKTLVYQQ
Trigger: CTGTTGATAAACCAAGGTCTTTTTGTGCAGGGCCCATGAGTGGGAATAGCTTGTTTGGGAATGTAGACCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR TCA 72 bp GAGTTTAAGGATCCTTCAGACAGTGGGAAAAATCTATaGGCCAATCCTGCAAAATGTGGCTCCATCGGTTCA +
Preference number: 3 (lower is better)
Translates to: EFKDPSDSGKNL*ANPAKCGSIGS
Trigger: TGAACCGATGGAGCCACATTTTGCAGGATTGGCTCATAGATTTTTCCCACTGTCTGAAGGATCCTTAAACTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CCA 72 bp AAGGGAAAAGAATTAAGATTTCTAACACCACCTACTTaGAGAGATAGGGAATTGGGACTATGCCAGTCACCA +
Preference number: 3 (lower is better)
Translates to: KGKELRFLTPPT*RDRELGLCQSP
Trigger: TGGTGACTGGCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCTTAATTCTTTTCCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GGCCCTACATGCGGCGCTGGTAGCCAGAGTGCATCTGAGCTGCCCGCAGGTAATGGCCCGGTAGGTGGCTaGCTGGGCCGTCAGAGGCGC +
Preference number: 4 (lower is better)
Translates to: GPTCGAGSQSASELPAGNGPVGG*LGRQRR
Trigger: GCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCC...ATTACCTGCGGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CAA 72 bp GGGCATCGGGCAGGCGACGGTAATCCAGCGAGGACTTaGTCGGCGAGCGGCGGAACGAAAGCTGCGACTCTG +
Preference number: 4 (lower is better)
Translates to: GHRAGDGNPART*SASGGTKAATL
Trigger: CAGAGTCGCAGCTTTCGTTCCGCCGCTCGCCGACAAAGTCCTCGCTGGATTACCGTCGCCTGCCCGATGCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GGCATCGGGCAGGCGACGGTAATCCAGCGAGGACTTTGTCGGCGAGCGGCGGAAAGCACGGTAAGAAGCTaGCTGAGCTGCCATGGGCTG +
Preference number: 4 (lower is better)
Translates to: GIGQATVIQRGLCRRAAESTVRS*LSCHGL
Trigger: CAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCT...TTCCGCCGCTCGCCGACAAAGTCCTCGCTGGATTACCGTCGCCTGCCCGATGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp CCCCACACTCAAGCACCCTTCCACACCCACTCTGGGTCTTCAGGCTGCCTTTCTCCACGTCACACTCGATaGCGCGTCCACGGCGCTCGA +
Preference number: 4 (lower is better)
Translates to: PHTQAPFHTHSGSSGCLSPRHTR*RVHGAR
Trigger: TCGAGCGCCGTGGACGCGTCATCGAGTGTGACGTGG...AGAAAGGCAGCCTGAAGACCCAGAGTGGGTGTGGAAGGGTGCTTGAGTGTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp GGCCCTACATGCGGCGCTGGTAGCCAGAGTGCATCTGAGCTGCCCGCAGGTAATAGTGCGGTAAGGAGCTaGCAGGGTGGCAGAAGGCTG +
Preference number: 4 (lower is better)
Translates to: GPTCGAGSQSASELPAGNSAVRS*QGGRRL
Trigger: CAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACT...ATTACCTGCGGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GTGGTAAGCGGGGATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTGTAGCTGGCCCGGGGTaGGGAGAGGCGGGTACGCTC +
Preference number: 4 (lower is better)
Translates to: VVSGDLDTDQLTVPQDLSVAGPG*GEAGTL
Trigger: GAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTAC...ACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTCTCAACAGCCTCCGCAGCTCGTGGCCATaGAGGGCCTCGATGGCGCGC +
Preference number: 4 (lower is better)
Translates to: DLDTDQLTVPQDLSLNSLRSSWP*RASMAR
Trigger: GCGCGCCATCGAGGCCCTGCATGGCCACGAGCTGCG...GAGGCTGTTGAGACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp CGGAATGGGCATCGGGCAGGCGACGGTAATCCAGCGAGGACTTTGTCGGCGAGCAGAAGCTGCCTGAGCTaGCATGGGCTGAGTCCGATA +
Preference number: 4 (lower is better)
Translates to: RNGHRAGDGNPARTLSASRSCLS*HGLSPI
Trigger: TATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCT...GCTCGCCGACAAAGTCCTCGCTGGATTACCGTCGCCTGCCCGATGCCCATTCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GGGAGAGGTATGAGAGAGGGTGGTGATAACCTGGGTCTGCACCCTACCCTACCTTCCCATCGTAGGCACTaGCCGGCTGGCCACGGTAGG +
Preference number: 4 (lower is better)
Translates to: GRGMREGGDNLGLHPTLPSHRRH*PAGHGR
Trigger: CCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGA...AGGTAGGGTAGGGTGCAGACCCAGGTTATCACCACCCTCTCTCATACCTCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp CCATTGGTCGCCAGGAAACCATTCCAATCCCCACACTCAAGCACCCTTCCACACCACGAGCGCGCGACCTaGACGCAGCTCGTGGCCATG +
Preference number: 4 (lower is better)
Translates to: PLVARKPFQSPHSSTLPHHERAT*TQLVAM
Trigger: CATGGCCACGAGCTGCGTCCAGGTCGCGCGCTCGTG...GTGTGGAAGGGTGCTTGAGTGTGGGGATTGGAATGGTTTCCTGGCGACCAATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CCA 90 bp GCCTCCCTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGGTTGGGCCCGGTAGGTaGCTGGCTGGGCCGTCAGAG +
Preference number: 4 (lower is better)
Translates to: ASLASKKKNAPPDISCRLVGPGR*LAGPSE
Trigger: CTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAAC...CAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAGGGAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp TCCAGCGAGGACTTTGTCGGCGAGCGGCGGAACGAAAGCTGCGACTCTGATAAAAACGGCGCAGGGGGCTaGGGTCGCGACCAAAGAATG +
Preference number: 4 (lower is better)
Translates to: SSEDFVGERRNESCDSDKNGAGG*GRDQRM
Trigger: CATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTT...TTTATCAGAGTCGCAGCTTTCGTTCCGCCGCTCGCCGACAAAGTCCTCGCTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GTAACCCTTTCCTGGCCTCCCTCGCATCTAAAAAGAAAAACGCGCCGCCTGACACACGAGCGCGCGACCTaGACGCAGCTCGTGGCCATG +
Preference number: 4 (lower is better)
Translates to: VTLSWPPSHLKRKTRRLTHERAT*TQLVAM
Trigger: CATGGCCACGAGCTGCGTCCAGGTCGCGCGCTCGTG...TGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAGGGAGGCCAGGAAAGGGTTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp CTACATGCGGCGCTGGTAGCCAGAGTGCATCTGAGCTGCCCGCAGGTAATCATTGTCTTGTCCCCAGACTaGATAGCCAGGGCAGGCCCC +
Preference number: 4 (lower is better)
Translates to: LHAALVARVHLSCPQVIIVLSPD*IARAGP
Trigger: GGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGAC...AATGATTACCTGCGGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GGAACGAAAGCTGCGACTCTGATAAACGGCGGTAATCAGAGAGCTCGGCTAAACGCGGCGGGGTGCTGTTaGCGTTGGCAACGGCCCCCT +
Preference number: 4 (lower is better)
Translates to: GTKAATLINGGNQRARLNAAGCC*RWQRPP
Trigger: AGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGC...GTTTAGCCGAGCTCTCTGATTACCGCCGTTTATCAGAGTCGCAGCTTTCGTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GGCCCTACATGCGGCGCTGGTAGCCAGAGTGCATCTGAGCTGCCCGCAGGTAATGCGTTCTCGCGCATGTaGACGAAGGCAAACTGTTTC +
Preference number: 4 (lower is better)
Translates to: GPTCGAGSQSASELPAGNAFSRM*TKANCF
Trigger: GAAACAGTTTGCCTTCGTGCACATGCGCGAGAACGC...ATTACCTGCGGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp ACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCCAGTCACCATCAGCTCGCAGCTCGTGGCCATaGAGGGCCTCGATGGCGCGC +
Preference number: 4 (lower is better)
Translates to: TPPTWRDRELGLCQSPSARSSWP*RASMAR
Trigger: GCGCGCCATCGAGGCCCTGCATGGCCACGAGCTGCG...AGCTGATGGTGACTGGCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp AGAACGACGGACGAAAGTAGGGTCCCCAACTTCCCAGGGTGGACGCACCTCATAACCAGTTCCAGGGAATaGTGTGTCCCCAGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: RTTDESRVPNFPGWTHLITSSRE*CVPSPW
Trigger: CCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGT...TATGAGGTGCGTCCACCCTGGGAAGTTGGGGACCCTACTTTCGTCCGTCGTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GTGGTAAGCGGGGATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTAACGGCGCAGGGGGCTaGGGTCGCGACCAAAGAATG +
Preference number: 4 (lower is better)
Translates to: VVSGDLDTDQLTVPQDLSNGAGG*GRDQRM
Trigger: CATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTT...ACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GGCCCTACATGCGGCGCTGGTAGCCAGAGTGCATCTGAGCTGCCCGCAGGTAATAGAAGCAGCCTGTTGTaGAGCATATGGGGCAGACTG +
Preference number: 4 (lower is better)
Translates to: GPTCGAGSQSASELPAGNRSSLL*SIWGRL
Trigger: CAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCT...ATTACCTGCGGGCAGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GTGGTAAGCGGGGATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTAGCCCCGTAAGCAGCTaGCGCCCCATAGGAGCCAGT +
Preference number: 4 (lower is better)
Translates to: VVSGDLDTDQLTVPQDLSSPVSS*RPIGAS
Trigger: ACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCT...ACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp AAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACCTCCAAACAGGCCCGGTAGGTGGCTaGCTGGGCCGTCAGAGGCGC +
Preference number: 4 (lower is better)
Translates to: KKKNAPPDISCRLYHLQTGPVGG*LGRQRR
Trigger: GCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCC...TGTTTGGAGGTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GGAACGAAAGCTGCGACTCTGATAAACGGCGGTAATCAGAGAGCTCGGCTAAACGTTGGGCCCGGTAGGTaGCTGGCTGGGCCGTCAGAG +
Preference number: 4 (lower is better)
Translates to: GTKAATLINGGNQRARLNVGPGR*LAGPSE
Trigger: CTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAAC...GTTTAGCCGAGCTCTCTGATTACCGCCGTTTATCAGAGTCGCAGCTTTCGTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp ATTATAGGAGCCCGAATAGCGTGCGTAATCGGAATGGGCATCGGGCAGGCGACGGGCACTGTAAGAGGCTaGGGGCTGGGCACTGTAAGA +
Preference number: 4 (lower is better)
Translates to: IIGARIACVIGMGIGQATGTVRG*GLGTVR
Trigger: TCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCC...CGTCGCCTGCCCGATGCCCATTCCGATTACGCACGCTATTCGGGCTCCTATAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp CCATTGGTCGCCAGGAAACCATTCCAATCCCCACACTCAAGCACCCTTCCACACAGACAGGTAGGCTGCTaGTGGCTGGCCTGTCCCATC +
Preference number: 4 (lower is better)
Translates to: PLVARKPFQSPHSSTLPHRQVGC*WLACPI
Trigger: GATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCT...GTGTGGAAGGGTGCTTGAGTGTGGGGATTGGAATGGTTTCCTGGCGACCAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR TCA 90 bp AGCGGGGATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTCTCAACAGACAGGTAGGCTGCTaGTGGCTGGCCTGTCCCATC +
Preference number: 4 (lower is better)
Translates to: SGDLDTDQLTVPQDLSLNRQVGC*WLACPI
Trigger: GATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCT...GTTGAGACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GGGAGAGGTATGAGAGAGGGTGGTGATAACCTGGGTCTGCACCCTACCCTACCTGCCAAGCGAGGAAGCTaGAGCAGACTGGGAACTAGG +
Preference number: 4 (lower is better)
Translates to: GRGMREGGDNLGLHPTLPAKRGS*SRLGTR
Trigger: CCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGC...AGGTAGGGTAGGGTGCAGACCCAGGTTATCACCACCCTCTCTCATACCTCTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GTAACCCTTTCCTGGCCTCCCTCGCATCTAAAAAGAAAAACGCGCCGCCTGACAAGCCCCGTAAGCAGCTaGCGCCCCATAGGAGCCAGT +
Preference number: 4 (lower is better)
Translates to: VTLSWPPSHLKRKTRRLTSPVSS*RPIGAS
Trigger: ACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCT...TGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAGGGAGGCCAGGAAAGGGTTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp CTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACAGGGATCGTCGTAGCTaGCCCGGGGTGGGGAGAGGC +
Preference number: 4 (lower is better)
Translates to: LASKKKNAPPDISCRLYHRDRRS*PGVGRG
Trigger: GCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCT...GTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp ACACCCACTCTGGGTCTTCAGGCTGCCTTTCTTCTAGCTGTCACGTCTTCCTGGGGCACTGTAAGAGGCTaGGGGCTGGGCACTGTAAGA +
Preference number: 4 (lower is better)
Translates to: TPTLGLQAAFLLAVTSSWGTVRG*GLGTVR
Trigger: TCTTACAGTGCCCAGCCCTCAGCCTCTTACAGTGCC...CCAGGAAGACGTGACAGCTAGAAGAAAGGCAGCCTGAAGACCCAGAGTGGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp TCCATTGGTCGCCAGGAAACCATTCCAATCCCCACACTCAAGCACCCTTCCACAAGTGCGGTAAGGAGCTaGCAGGGTGGCAGAAGGCTG +
Preference number: 4 (lower is better)
Translates to: SIGRQETIPIPTLKHPSTSAVRS*QGGRRL
Trigger: CAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACT...TGTGGAAGGGTGCTTGAGTGTGGGGATTGGAATGGTTTCCTGGCGACCAATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp CTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACCATAGGGCGGCGGGGTaGTGTTGGCGTTGGCAACGG +
Preference number: 4 (lower is better)
Translates to: LASKKKNAPPDISCRLYHHRAAG*CWRWQR
Trigger: CCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATG...GTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GCTCCAGGTAGGCCTAGGGGAGATGCCATTGGGGACAGGGAGGGTATACCAGATCATAGGCAGCAGCTGTaGCTGGTTGTGCCACATAAG +
Preference number: 4 (lower is better)
Translates to: APGRPRGDAIGDREGIPDHRQQL*LVVPHK
Trigger: CTTATGTGGCACAACCAGCCACAGCTGCTGCCTATG...ATCTGGTATACCCTCCCTGTCCCCAATGGCATCTCCCCTAGGCCTACCTGGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CAA 72 bp AGGGCAGGGCTCCAGGTAGGCCTAGGGGAGATGCCATaGGGGACAGGGAGGGTATACCAGATTTGTCTCAAA +
Preference number: 4 (lower is better)
Translates to: RAGLQVGLGEMP*GTGRVYQICLK
Trigger: TTTGAGACAAATCTGGTATACCCTCCCTGTCCCCAATGGCATCTCCCCTAGGCCTACCTGGAGCCCTGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp GGAGGGTATACCAGATTTGTCTCAAACAGTTGGTGTCCCTGTCAGAAGGCTCATCCACGTCACACTCGATaGCGCGTCCACGGCGCTCGA +
Preference number: 4 (lower is better)
Translates to: GGYTRFVSNSWCPCQKAHPRHTR*RVHGAR
Trigger: TCGAGCGCCGTGGACGCGTCATCGAGTGTGACGTGG...ATGAGCCTTCTGACAGGGACACCAACTGTTTGAGACAAATCTGGTATACCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp TTCCACACCCACTCTGGGTCTTCAGGCTGCCTTTCTTCTAGCTGTCACGTCTTCTCACTTCTTTGCCGTTaGGCTGCGCGATGGCGGCTT +
Preference number: 4 (lower is better)
Translates to: FHTHSGSSGCLSSSCHVFSLLCR*AARWRL
Trigger: AAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGA...GAAGACGTGACAGCTAGAAGAAAGGCAGCCTGAAGACCCAGAGTGGGTGTGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp GTAACCCTTTCCTGGCCTCCCTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCTTTGCCGTTGAGCTaGGCGATGGCGGCTTTGGCA +
Preference number: 4 (lower is better)
Translates to: VTLSWPPSHLKRKTRRLTSLPLS*AMAALA
Trigger: TGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGA...TGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAGGGAGGCCAGGAAAGGGTTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp AATTCCATTGGTCGCCAGGAAACCATTCCAATCCCCACACTCAAGCACCCTTCCACCAGTTCCAGGGAATaGTGTGTCCCCAGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: NSIGRQETIPIPTLKHPSTSSRE*CVPSPW
Trigger: CCAGGGGCTGGGGACACAGCATTCCCTGGAACTGGT...GGAAGGGTGCTTGAGTGTGGGGATTGGAATGGTTTCCTGGCGACCAATGGAATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp ACATCAGTGGTAAGCGGGGATTTGGACACGGACCAACTGACTGTCCCACAGGATGCCAAGCGAGGAAGCTaGAGCAGACTGGGAACTAGG +
Preference number: 4 (lower is better)
Translates to: TSVVSGDLDTDQLTVPQDAKRGS*SRLGTR
Trigger: CCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGC...ATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCACTGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp ACACCCACTCTGGGTCTTCAGGCTGCCTTTCTTCTAGCTGTCACGTCTTCCTGGCGAAGAAGCTGCAGCTaGCTGACCCCCATAAGTGGA +
Preference number: 4 (lower is better)
Translates to: TPTLGLQAAFLLAVTSSWRRSCS*LTPISG
Trigger: TCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCG...CCAGGAAGACGTGACAGCTAGAAGAAAGGCAGCCTGAAGACCCAGAGTGGGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp GTAACCCTTTCCTGGCCTCCCTCGCATCTAAAAAGAAAAACGCGCCGCCTGACAGGCACCATAGGAGGCTaGTTGAGCCCCATAGGAACC +
Preference number: 4 (lower is better)
Translates to: VTLSWPPSHLKRKTRRLTGTIGG*LSPIGT
Trigger: GGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCC...TGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAGGGAGGCCAGGAAAGGGTTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GTAACCCTTTCCTGGCCTCCCTCGCATCTAAAAAGAAAAACGCGCCGCCTGACAAGGCTGATGACTGAGTaGGGTAAGGAGCTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: VTLSWPPSHLKRKTRRLTRLMTE*GKELPG
Trigger: CCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCT...TGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAGGGAGGCCAGGAAAGGGTTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp ACACCCACTCTGGGTCTTCAGGCTGCCTTTCTTCTAGCTGTCACGTCTTCCTGGCAGCCCCTGGTTTCTTaGTCTTGTCCCCAGACTGGA +
Preference number: 4 (lower is better)
Translates to: TPTLGLQAAFLLAVTSSWQPLVS*SCPQTG
Trigger: TCCAGTCTGGGGACAAGACCAAGAAACCAGGGGCTG...CCAGGAAGACGTGACAGCTAGAAGAAAGGCAGCCTGAAGACCCAGAGTGGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CCA 90 bp ACTCTGGGTCTTCAGGCTGCCTTTCTTCTAGCTGTCACGTCTTCCTGGATGTCACAGCTGACCCCTGTATaGGGCCCCAAGGGAGACAGA +
Preference number: 4 (lower is better)
Translates to: TLGLQAAFLLAVTSSWMSQLTPV*GPKGDR
Trigger: TCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTG...TGACATCCAGGAAGACGTGACAGCTAGAAGAAAGGCAGCCTGAAGACCCAGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CCA 90 bp GGAACGAAAGCTGCGACTCTGATAAACGGCGGTAATCAGAGAGCTCGGCTAAACCAGCTGACCCCTGTATaGGGCCCCAAGGGAGACAGA +
Preference number: 4 (lower is better)
Translates to: GTKAATLINGGNQRARLNQLTPV*GPKGDR
Trigger: TCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTG...GTTTAGCCGAGCTCTCTGATTACCGCCGTTTATCAGAGTCGCAGCTTTCGTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp TTCCACACCCACTCTGGGTCTTCAGGCTGCCTTTCTTCTAGCTGTCACGTCTTCGAAGCTGCAGCAGACTaGGAACTAGGGCTAGCCAGC +
Preference number: 4 (lower is better)
Translates to: FHTHSGSSGCLSSSCHVFEAAAD*ELGLAS
Trigger: GCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTC...GAAGACGTGACAGCTAGAAGAAAGGCAGCCTGAAGACCCAGAGTGGGTGTGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CCA 90 bp CATCAGCTGTCGGTTGTATCACCTCCAAACAACCTTAAGTATCGCGCACAAAAAGTAGCTGGCCCGGGGTaGGGAGAGGCGGGTACGCTC +
Preference number: 4 (lower is better)
Translates to: HQLSVVSPPNNLKYRAQKVAGPG*GEAGTL
Trigger: GAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTAC...TTTTTGTGCGCGATACTTAAGGTTGTTTGGAGGTGATACAACCGACAGCTGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp GATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTCTCAACAGCCTCCTTCTGCCCCTTGGTTaGGAGTTCCACGTTGATGCG +
Preference number: 4 (lower is better)
Translates to: DLDTDQLTVPQDLSLNSLLLPLG*EFHVDA
Trigger: CGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAG...GAGGCTGTTGAGACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTCTCAACAGCCTCGGCGCTCGAAGAGGCTaGGCAATTCCTGACTTGTAC +
Preference number: 4 (lower is better)
Translates to: DLDTDQLTVPQDLSLNSLGARRG*AIPDLY
Trigger: GTACAAGTCAGGAATTGCGCAGCCTCTTCGAGCGCC...GAGGCTGTTGAGACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp AGCGGGGATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTCTCAACGGCGGCTTTGGCATCTaGTTCCTTCTCCATGTGAAC +
Preference number: 4 (lower is better)
Translates to: SGDLDTDQLTVPQDLSLNGGFGI*FLLHVN
Trigger: GTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCC...GTTGAGACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GCAGGTAATCATTATAGGAGCCCGAATAGCGTGCGTAATCGGAATGGGCATCGGGCAGGCCCCTTCTTCTaGCCCTTGGTTGAGAGTTCC +
Preference number: 4 (lower is better)
Translates to: AGNHYRSPNSVRNRNGHRAGPFF*PLVESS
Trigger: GGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGC...CCGATGCCCATTCCGATTACGCACGCTATTCGGGCTCCTATAATGATTACCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GTAACCCTTTCCTGGCCTCCCTCGCATCTAAAAAGAAAAACGCGCCGCCTGACAAGAAGCTGCCTGAGCTaGCATGGGCTGAGTCCGATA +
Preference number: 4 (lower is better)
Translates to: VTLSWPPSHLKRKTRRLTRSCLS*HGLSPI
Trigger: TATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCT...TGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAGGGAGGCCAGGAAAGGGTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp TCCATTGGTCGCCAGGAAACCATTCCAATCCCCACACTCAAGCACCCTTCCACAGCTGGTAGTCGAAGGTaGCAGAGAAGCCACCAGTTC +
Preference number: 4 (lower is better)
Translates to: SIGRQETIPIPTLKHPSTAGSRR*QRSHQF
Trigger: GAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGC...TGTGGAAGGGTGCTTGAGTGTGGGGATTGGAATGGTTTCCTGGCGACCAATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CCA 90 bp TCCATTGGTCGCCAGGAAACCATTCCAATCCCCACACTCAAGCACCCTTCCACACAAAGAATGGTGGTGTaGGCTGACGGGCTTGCCCAT +
Preference number: 4 (lower is better)
Translates to: SIGRQETIPIPTLKHPSTQRMVV*ADGLAH
Trigger: ATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTG...TGTGGAAGGGTGCTTGAGTGTGGGGATTGGAATGGTTTCCTGGCGACCAATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CCA 90 bp CTGAGCACTATGCCCCACCTAAATCCCAATGGCCAGAACTGTTCAGACACTCACGAAGCTGCAGCAGACTaGGAACTAGGGCTAGCCAGC +
Preference number: 4 (lower is better)
Translates to: LSTMPHLNPNGQNCSDTHEAAAD*ELGLAS
Trigger: GCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTC...GTGAGTGTCTGAACAGTTCTGGCCATTGGGATTTAGGTGGGGCATAGTGCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GCCTCCCTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGGGCGCCATAAGAGGATaGCTGGTTACCATAGGAAGC +
Preference number: 4 (lower is better)
Translates to: ASLASKKKNAPPDISCRLGAIRG*LVTIGS
Trigger: GCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCC...CAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAGGGAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp AGCGGGGATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTCTCAACGGCGCCATAAGAGGATaGCTGGTTACCATAGGAAGC +
Preference number: 4 (lower is better)
Translates to: SGDLDTDQLTVPQDLSLNGAIRG*LVTIGS
Trigger: GCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCC...GTTGAGACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GTGGTAAGCGGGGATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTCATAGGCAGCAGCTGTaGCTGGTTGTGCCACATAAG +
Preference number: 4 (lower is better)
Translates to: VVSGDLDTDQLTVPQDLSHRQQL*LVVPHK
Trigger: CTTATGTGGCACAACCAGCCACAGCTGCTGCCTATG...ACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp CCTCTCCTGGGGAAGGCCCACATGATAGAGGGAGGGAATGAAAAGCCACCATTGATAGGAACCAGCCATTaGGGTAGTGGCTTGTGCAGC +
Preference number: 4 (lower is better)
Translates to: PLLGKAHMIEGGNEKPPLIGTSH*GSGLCS
Trigger: GCTGCACAAGCCACTACCCCAATGGCTGGTTCCTAT...CAATGGTGGCTTTTCATTCCCTCCCTCTATCATGTGGGCCTTCCCCAGGAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GCCTCCCTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGCTGGGTCTGAACAACTaGTTGAGCCCCATAGGAACC +
Preference number: 4 (lower is better)
Translates to: ASLASKKKNAPPDISCRLLGLNN*LSPIGT
Trigger: GGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAG...CAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAGGGAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp AGGATCCTTCAGACAGTGGGAAAAATCTATGAGCCAATCCTGCAAAATGTGGCTAGGGATCGTCGTAGCTaGCCCGGGGTGGGGAGAGGC +
Preference number: 4 (lower is better)
Translates to: RILQTVGKIYEPILQNVARDRRS*PGVGRG
Trigger: GCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCT...AGCCACATTTTGCAGGATTGGCTCATAGATTTTTCCCACTGTCTGAAGGATCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
3UTR CAA 72 bp GTCCCCAACTTCCCAGGGTGGACGCACCTCATAAGCTaGCCTTCAGCCAGTGAGTGCCAAAAGGACTACTTT +
Preference number: 4 (lower is better)
Translates to: VPNFPGWTHLIS*PSASECQKDYF
Trigger: AAAGTAGTCCTTTTGGCACTCACTGGCTGAAGGCAAGCTTATGAGGTGCGTCCACCCTGGGAAGTTGGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp CCATTGGTCGCCAGGAAACCATTCCAATCCCCACACTCAAGCACCCTTCCACACTTGAGAGTTCCACGTTaGTGCGCTTGCCCTTCACTT +
Preference number: 4 (lower is better)
Translates to: PLVARKPFQSPHSSTLPHLRVPR*CACPSL
Trigger: AAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAA...GTGTGGAAGGGTGCTTGAGTGTGGGGATTGGAATGGTTTCCTGGCGACCAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR TCA 90 bp CTTTCTTCTAGCTGTCACGTCTTCCTGGATGTCAAACTGGCTCACCTGACAGTGAATGGTGGTGTGGGCTaGCGGGCTTGCCCATCAAAG +
Preference number: 4 (lower is better)
Translates to: LSSSCHVFLDVKLAHLTVNGGVG*RACPSK
Trigger: CTTTGATGGGCAAGCCCGTCAGCCCACACCACCATT...CACTGTCAGGTGAGCCAGTTTGACATCCAGGAAGACGTGACAGCTAGAAGAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR TCA 90 bp ATCATACTATCCAGGTCAAGGAACCAACCTGGGTTCTTCAGGTCAGTGGGAAACGCCGCAGCAGCAGACTaGGCTCCATATGAGCCTGAC +
Preference number: 4 (lower is better)
Translates to: IILSRSRNQPGFFRSVGNAAAAD*APYEPD
Trigger: GTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGC...GTTTCCCACTGACCTGAAGAACCCAGGTTGGTTCCTTGACCTGGATAGTATGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp CATACTATCCAGGTCAAGGAACCAACCTGGGTTCTTCAGGTCAGTGGGAAACCAGGCACCATAGGAGGCTaGTTGAGCCCCATAGGAACC +
Preference number: 4 (lower is better)
Translates to: HTIQVKEPTWVLQVSGKPGTIGG*LSPIGT
Trigger: GGTTCCTATGGGGCTCAAGCAGCCTCCTATGGTGCC...TGGTTTCCCACTGACCTGAAGAACCCAGGTTGGTTCCTTGACCTGGATAGTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp TTCCACACCCACTCTGGGTCTTCAGGCTGCCTTTCTTCTAGCTGTCACGTCTTCAGAAGCAGCCTGTTGTaGAGCATATGGGGCAGACTG +
Preference number: 4 (lower is better)
Translates to: FHTHSGSSGCLSSSCHVFRSSLL*SIWGRL
Trigger: CAGTCTGCCCCATATGCTGCACAACAGGCTGCTTCT...GAAGACGTGACAGCTAGAAGAAAGGCAGCCTGAAGACCCAGAGTGGGTGTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp CATCAGCTGTCGGTTGTATCACCTCCAAACAACCTTAAGTATCGCGCACAAAAATCCCATCGTAGGCACTaGCCGGCTGGCCACGGTAGG +
Preference number: 4 (lower is better)
Translates to: HQLSVVSPPNNLKYRAQKSHRRH*PAGHGR
Trigger: CCTACCGTGGCCAGCCGGGCAGTGCCTACGATGGGA...TTTTTGTGCGCGATACTTAAGGTTGTTTGGAGGTGATACAACCGACAGCTGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp AGGATCCTTCAGACAGTGGGAAAAATCTATGAGCCAATCCTGCAAAATGTGGCTCATAGGGCGGCGGGGTaGTGTTGGCGTTGGCAACGG +
Preference number: 4 (lower is better)
Translates to: RILQTVGKIYEPILQNVAHRAAG*CWRWQR
Trigger: CCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATG...AGCCACATTTTGCAGGATTGGCTCATAGATTTTTCCCACTGTCTGAAGGATCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp CAGTCACCATCAGCTAAAACATCAGTGGTAAGCGGGGATTTGGACACGGACCAAGCGACCAAAGAATGGTaGTGTGGGCTGACGGGCTTG +
Preference number: 4 (lower is better)
Translates to: QSPSAKTSVVSGDLDTDQATKEW*CGLTGL
Trigger: CAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGC...TTGGTCCGTGTCCAAATCCCCGCTTACCACTGATGTTTTAGCTGATGGTGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp ACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCCAGTCACCATCAGCTCCTGACCCCCATAAGTaGAAAGGGCTGAGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: TPPTWRDRELGLCQSPSAPDPHK*KGLRLR
Trigger: CCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGG...AGCTGATGGTGACTGGCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp TGCAATCAAGACAATGACAACCAGGTTTCCAAACCACGAATCGCCCCAAGTTTTGGGTGCTGTTGGCGTTaGCAACGGCCCCCTGGGACA +
Preference number: 4 (lower is better)
Translates to: CNQDNDNQVSKPRIAPSFGCCWR*QRPPGT
Trigger: TGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCC...AAAACTTGGGGCGATTCGTGGTTTGGAAACCTGGTTGTCATTGTCTTGATTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CCA 90 bp GTGCCAAAAGGACTACTTTCTTTCACATCCATCCCACCAAAACCAGAACAAAGGGGGTGCTGTTGGCGTTaGCAACGGCCCCCTGGGACA +
Preference number: 4 (lower is better)
Translates to: VPKGLLSFTSIPPKPEQRGCCWR*QRPPGT
Trigger: TGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCC...CCTTTGTTCTGGTTTTGGTGGGATGGATGTGAAAGAAAGTAGTCCTTTTGGCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GAATTAAGATTTCTAACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCGCGGCGGGGTGCTGTTaGCGTTGGCAACGGCCCCCT +
Preference number: 4 (lower is better)
Translates to: ELRFLTPPTWRDRELGLCAAGCC*RWQRPP
Trigger: AGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGC...GCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCTTAATTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR CAA 72 bp GGAGATGCCATTGGGGACAGGGAGGGTATACCAGATTaGTCTCAAACAGTTGGTGTCCCTGTCAGAAGGCTC +
Preference number: 4 (lower is better)
Translates to: GDAIGDREGIPD*SQTVGVPVRRL
Trigger: GAGCCTTCTGACAGGGACACCAACTGTTTGAGACAAATCTGGTATACCCTCCCTGTCCCCAATGGCATCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp TTCCCACTCATGGGCCCTGCACAAAAAGACCTTGGTTTATCAACAGAACGACGGCTTCTGCCCCTTGGTTaGGAGTTCCACGTTGATGCG +
Preference number: 4 (lower is better)
Translates to: FPLMGPAQKDLGLSTERRLLPLG*EFHVDA
Trigger: CGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAG...CCGTCGTTCTGTTGATAAACCAAGGTCTTTTTGTGCAGGGCCCATGAGTGGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GGCACAGAGGAAATAGCTAAAGTAACCCTTTCCTGGCCTCCCTCGCATCTAAAAGCAGGCCCCTTCTTCTaGCCCTTGGTTGAGAGTTCC +
Preference number: 4 (lower is better)
Translates to: GTEEIAKVTLSWPPSHLKAGPFF*PLVESS
Trigger: GGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGC...TTTTAGATGCGAGGGAGGCCAGGAAAGGGTTACTTTAGCTATTTCCTCTGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp AATTCCATTGGTCGCCAGGAAACCATTCCAATCCCCACACTCAAGCACCCTTCCAGCCACCAGTGCTGTTaGCAAAAGCCTGCTGGTAGT +
Preference number: 4 (lower is better)
Translates to: NSIGRQETIPIPTLKHPSSHQCC*QKPAGS
Trigger: ACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCT...GGAAGGGTGCTTGAGTGTGGGGATTGGAATGGTTTCCTGGCGACCAATGGAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp ATCATACTATCCAGGTCAAGGAACCAACCTGGGTTCTTCAGGTCAGTGGGAAACAGGCTGATGACTGAGTaGGGTAAGGAGCTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: IILSRSRNQPGFFRSVGNRLMTE*GKELPG
Trigger: CCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCT...GTTTCCCACTGACCTGAAGAACCCAGGTTGGTTCCTTGACCTGGATAGTATGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp TCAGCTAAAACATCAGTGGTAAGCGGGGATTTGGACACGGACCAACTGACTGTCCAAAGAATGGTGGTGTaGGCTGACGGGCTTGCCCAT +
Preference number: 4 (lower is better)
Translates to: SAKTSVVSGDLDTDQLTVQRMVV*ADGLAH
Trigger: ATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTG...GACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCACTGATGTTTTAGCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp AAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACCTCCAAACAGCGACCAAAGAATGGTaGTGTGGGCTGACGGGCTTG +
Preference number: 4 (lower is better)
Translates to: KKKNAPPDISCRLYHLQTATKEW*CGLTGL
Trigger: CAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGC...TGTTTGGAGGTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp CTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACCTCCAAACTGCCTGAGCTGCCATaGGCTGAGTCCGATAGCCAA +
Preference number: 4 (lower is better)
Translates to: LKRKTRRLTSAVGCITSKLPELP*AESDSQ
Trigger: TTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAG...TTTGGAGGTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp ACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCCAGTCACCATCAGCTAGGCTGCGCAATTCCTaGCTTGTACATGCAGCCGAT +
Preference number: 4 (lower is better)
Translates to: TPPTWRDRELGLCQSPSARLRNS*LVHAAD
Trigger: ATCGGCTGCATGTACAAGTCAGGAATTGCGCAGCCT...AGCTGATGGTGACTGGCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp CCCACTCATGGGCCCTGCACAAAAAGACCTTGGTTTATCAACAGAACGACGGACTTGAGAGTTCCACGTTaGTGCGCTTGCCCTTCACTT +
Preference number: 4 (lower is better)
Translates to: PTHGPCTKRPWFINRTTDLRVPR*CACPSL
Trigger: AAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAA...GTCCGTCGTTCTGTTGATAAACCAAGGTCTTTTTGTGCAGGGCCCATGAGTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp GCCTCCCTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGGGAACCATACCTTTTTaGCATGGCGACAGCCTTTTT +
Preference number: 4 (lower is better)
Translates to: ASLASKKKNAPPDISCRLGTIPF*HGDSLF
Trigger: AAAAAGGCTGTCGCCATGTCAAAAAGGTATGGTTCC...CAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAGGGAGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp CTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACGGCGGCTTTGGCATCTaGTTCCTTCTCCATGTGAAC +
Preference number: 4 (lower is better)
Translates to: LASKKKNAPPDISCRLYHGGFGI*FLLHVN
Trigger: GTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCC...GTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp CATACTATCCAGGTCAAGGAACCAACCTGGGTTCTTCAGGTCAGTGGGAAACCAAGCCACCAGTGCTGTTaGCAAAAGCCTGCTGGTAGT +
Preference number: 4 (lower is better)
Translates to: HTIQVKEPTWVLQVSGKPSHQCC*QKPAGS
Trigger: ACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCT...TGGTTTCCCACTGACCTGAAGAACCCAGGTTGGTTCCTTGACCTGGATAGTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp AAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACCTCCAAACACGAAGAAGCTGCAGCTaGCTGACCCCCATAAGTGGA +
Preference number: 4 (lower is better)
Translates to: KKKNAPPDISCRLYHLQTRRSCS*LTPISG
Trigger: TCCACTTATGGGGGTCAGGCAGCTGCAGCTTCTTCG...TGTTTGGAGGTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp CCAGTGAGTGCCAAAAGGACTACTTTCTTTCACATCCATCCCACCAAAACCAGACCTGACCCCCATAAGTaGAAAGGGCTGAGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: PVSAKRTTFFHIHPTKTRPDPHK*KGLRLR
Trigger: CCTCAGCCTCAGCCCTTTCCACTTATGGGGGTCAGG...TCTGGTTTTGGTGGGATGGATGTGAAAGAAAGTAGTCCTTTTGGCACTCACTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp CAGTCACCATCAGCTAAAACATCAGTGGTAAGCGGGGATTTGGACACGGACCAAATAGGAACCAGCCATTaGGGTAGTGGCTTGTGCAGC +
Preference number: 4 (lower is better)
Translates to: QSPSAKTSVVSGDLDTDQIGTSH*GSGLCS
Trigger: GCTGCACAAGCCACTACCCCAATGGCTGGTTCCTAT...TTGGTCCGTGTCCAAATCCCCGCTTACCACTGATGTTTTAGCTGATGGTGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR CAA 72 bp TCACCATCAGCTAAAACATCAGTGGTAAGCGGGGATTaGGACACGGACCAACTGACTGTCCCACAGGATCTC +
Preference number: 4 (lower is better)
Translates to: SPSAKTSVVSGD*DTDQLTVPQDL
Trigger: GAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCACTGATGTTTTAGCTGATGGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp GGAGGGTATACCAGATTTGTCTCAAACAGTTGGTGTCCCTGTCAGAAGGCTCATAGGCTGCGCAATTCCTaGCTTGTACATGCAGCCGAT +
Preference number: 4 (lower is better)
Translates to: GGYTRFVSNSWCPCQKAHRLRNS*LVHAAD
Trigger: ATCGGCTGCATGTACAAGTCAGGAATTGCGCAGCCT...ATGAGCCTTCTGACAGGGACACCAACTGTTTGAGACAAATCTGGTATACCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp GATGGCATGCTATTTAAGATGAGCTTAATTCCATTGGTCGCCAGGAAACCATTCGCCGCAGCAGCAGACTaGGCTCCATATGAGCCTGAC +
Preference number: 4 (lower is better)
Translates to: DGMLFKMSLIPLVARKPFAAAAD*APYEPD
Trigger: GTCAGGCTCATATGGAGCTCAGTCTGCTGCTGCGGC...GAATGGTTTCCTGGCGACCAATGGAATTAAGCTCATCTTAAATAGCATGCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp GCAATCAAGACAATGACAACCAGGTTTCCAAACCACGAATCGCCCCAAGTTTTATCTTTGCCGTTGAGCTaGGCGATGGCGGCTTTGGCA +
Preference number: 4 (lower is better)
Translates to: AIKTMTTRFPNHESPQVLSLPLS*AMAALA
Trigger: TGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGA...TAAAACTTGGGGCGATTCGTGGTTTGGAAACCTGGTTGTCATTGTCTTGATTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp CTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACCATCAAAGCCACCAGTaGTGTTGCCAAAAGCCTGCT +
Preference number: 4 (lower is better)
Translates to: LASKKKNAPPDISCRLYHHQSHQ*CCQKPA
Trigger: AGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATG...GTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GCAATCAAGACAATGACAACCAGGTTTCCAAACCACGAATCGCCCCAAGTTTTAAGCACGGTAAGAAGCTaGCTGAGCTGCCATGGGCTG +
Preference number: 4 (lower is better)
Translates to: AIKTMTTRFPNHESPQVLSTVRS*LSCHGL
Trigger: CAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCT...TAAAACTTGGGGCGATTCGTGGTTTGGAAACCTGGTTGTCATTGTCTTGATTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp CTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACATTAAGCGAAGAAGCTaGAGCTGCCTGACCCCCATA +
Preference number: 4 (lower is better)
Translates to: LASKKKNAPPDISCRLYHIKRRS*SCLTPI
Trigger: TATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAAT...GTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp ACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCCAGTCACCATCAGCTATTAAGCGAAGAAGCTaGAGCTGCCTGACCCCCATA +
Preference number: 4 (lower is better)
Translates to: TPPTWRDRELGLCQSPSAIKRRS*SCLTPI
Trigger: TATGGGGGTCAGGCAGCTGCAGCTTCTTCGCTTAAT...AGCTGATGGTGACTGGCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp TGCAATCAAGACAATGACAACCAGGTTTCCAAACCACGAATCGCCCCAAGTTTTCGGCGGAACGAAAGCTaGGACTCTGATAAACGGCGG +
Preference number: 4 (lower is better)
Translates to: CNQDNDNQVSKPRIAPSFRRNES*DSDKRR
Trigger: CCGCCGTTTATCAGAGTCGCAGCTTTCGTTCCGCCG...AAAACTTGGGGCGATTCGTGGTTTGGAAACCTGGTTGTCATTGTCTTGATTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CCA 90 bp GAATTAAGATTTCTAACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCGTCTTGTCCCCAGACTaGATAGCCAGGGCAGGCCCC +
Preference number: 4 (lower is better)
Translates to: ELRFLTPPTWRDRELGLCVLSPD*IARAGP
Trigger: GGGGCCTGCCCTGGCTATCCAGTCTGGGGACAAGAC...GCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCTTAATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR TCA 90 bp CGGTTGTATCACCTCCAAACAACCTTAAGTATCGCGCACAAAAATAAAAGGGAGAATGGTGGTGTGGGCTaGCGGGCTTGCCCATCAAAG +
Preference number: 4 (lower is better)
Translates to: RLYHLQTTLSIAHKNKRENGGVG*RACPSK
Trigger: CTTTGATGGGCAAGCCCGTCAGCCCACACCACCATT...CTCCCTTTTATTTTTGTGCGCGATACTTAAGGTTGTTTGGAGGTGATACAACCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp AGGATCCTTCAGACAGTGGGAAAAATCTATGAGCCAATCCTGCAAAATGTGGCTGCTGGTAGTCGAAGGTaGCAGAGAAGCCACCAGTTC +
Preference number: 4 (lower is better)
Translates to: RILQTVGKIYEPILQNVAAGSRR*QRSHQF
Trigger: GAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGC...AGCCACATTTTGCAGGATTGGCTCATAGATTTTTCCCACTGTCTGAAGGATCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp CGGTTGTATCACCTCCAAACAACCTTAAGTATCGCGCACAAAAATAAAAGGGAGCTGCCTGAGCTGCCATaGGCTGAGTCCGATAGCCAA +
Preference number: 4 (lower is better)
Translates to: RLYHLQTTLSIAHKNKRELPELP*AESDSQ
Trigger: TTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAG...CTCCCTTTTATTTTTGTGCGCGATACTTAAGGTTGTTTGGAGGTGATACAACCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GATGGCATGCTATTTAAGATGAGCTTAATTCCATTGGTCGCCAGGAAACCATTCCTGGACTCCACCATATaGGCCAAGCGAGGAAGCTGC +
Preference number: 4 (lower is better)
Translates to: DGMLFKMSLIPLVARKPFLDSTI*AKRGSC
Trigger: GCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAG...GAATGGTTTCCTGGCGACCAATGGAATTAAGCTCATCTTAAATAGCATGCCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CCA 90 bp CGGTTGTATCACCTCCAAACAACCTTAAGTATCGCGCACAAAAATAAAAGGGAGCTGGACTCCACCATATaGGCCAAGCGAGGAAGCTGC +
Preference number: 4 (lower is better)
Translates to: RLYHLQTTLSIAHKNKRELDSTI*AKRGSC
Trigger: GCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAG...CTCCCTTTTATTTTTGTGCGCGATACTTAAGGTTGTTTGGAGGTGATACAACCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR CAA 72 bp AAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTaGTATCACCTCCAAACAACCTTAAGTATCGCGCAC +
Preference number: 4 (lower is better)
Translates to: KKKNAPPDISCR*YHLQTTLSIAH
Trigger: GTGCGCGATACTTAAGGTTGTTTGGAGGTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR CAA 72 bp GGGACAGGGAGGGTATACCAGATTTGTCTCAAACAGTaGGTGTCCCTGTCAGAAGGCTCATCATACTATCCA +
Preference number: 4 (lower is better)
Translates to: GTGRVYQICLKQ*VSLSEGSSYYP
Trigger: TGGATAGTATGATGAGCCTTCTGACAGGGACACCAACTGTTTGAGACAAATCTGGTATACCCTCCCTGTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp CATCAGCTGTCGGTTGTATCACCTCCAAACAACCTTAAGTATCGCGCACAAAAAGCGTTCTCGCGCATGTaGACGAAGGCAAACTGTTTC +
Preference number: 4 (lower is better)
Translates to: HQLSVVSPPNNLKYRAQKAFSRM*TKANCF
Trigger: GAAACAGTTTGCCTTCGTGCACATGCGCGAGAACGC...TTTTTGTGCGCGATACTTAAGGTTGTTTGGAGGTGATACAACCGACAGCTGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp GTCCAACCACTTGATCTGAACTCTCTAGTCCCAAAGATGGCATGCTATTTAAGAGGAGCCCGAATAGCGTaGGTAATCGGAATGGGCATC +
Preference number: 4 (lower is better)
Translates to: VQPLDLNSLVPKMACYLRGARIA*VIGMGI
Trigger: GATGCCCATTCCGATTACGCACGCTATTCGGGCTCC...TCTTAAATAGCATGCCATCTTTGGGACTAGAGAGTTCAGATCAAGTGGTTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp TCAGCTAAAACATCAGTGGTAAGCGGGGATTTGGACACGGACCAACTGACTGTCAGAGTGCATCTGAGCTaGCCGCAGGTAATCATTATA +
Preference number: 4 (lower is better)
Translates to: SAKTSVVSGDLDTDQLTVRVHLS*PQVIII
Trigger: TATAATGATTACCTGCGGGCAGCTCAGATGCACTCT...GACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCACTGATGTTTTAGCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR TCA 90 bp CATACTATCCAGGTCAAGGAACCAACCTGGGTTCTTCAGGTCAGTGGGAAACCACATACAGTACCTTTTTaGCATGGCGACAGCCTTTTT +
Preference number: 4 (lower is better)
Translates to: HTIQVKEPTWVLQVSGKPHTVPF*HGDSLF
Trigger: AAAAAGGCTGTCGCCATGTCAAAAAGGTACTGTATG...TGGTTTCCCACTGACCTGAAGAACCCAGGTTGGTTCCTTGACCTGGATAGTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp CATCAGCTGTCGGTTGTATCACCTCCAAACAACCTTAAGTATCGCGCACAAAAACATCAAAGCCACCAGTaGTGTTGCCAAAAGCCTGCT +
Preference number: 4 (lower is better)
Translates to: HQLSVVSPPNNLKYRAQKHQSHQ*CCQKPA
Trigger: AGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATG...TTTTTGTGCGCGATACTTAAGGTTGTTTGGAGGTGATACAACCGACAGCTGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR GCA 90 bp CATCAGCTGTCGGTTGTATCACCTCCAAACAACCTTAAGTATCGCGCACAAAAATTCCTGACTTGTACATaGAGCCGATACATTGCCCAC +
Preference number: 4 (lower is better)
Translates to: HQLSVVSPPNNLKYRAQKFLTCT*SRYIAH
Trigger: GTGGGCAATGTATCGGCTGCATGTACAAGTCAGGAA...TTTTTGTGCGCGATACTTAAGGTTGTTTGGAGGTGATACAACCGACAGCTGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GAATTAAGATTTCTAACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCCTGTTGTGCAGCATATaGGGCAGACTGGGCACTGTA +
Preference number: 4 (lower is better)
Translates to: ELRFLTPPTWRDRELGLCLLCSI*GRLGTV
Trigger: TACAGTGCCCAGTCTGCCCCATATGCTGCACAACAG...GCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCTTAATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CCA 90 bp GAATTAAGATTTCTAACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCCTGGGTCTGAACAACTaGTTGAGCCCCATAGGAACC +
Preference number: 4 (lower is better)
Translates to: ELRFLTPPTWRDRELGLCLGLNN*LSPIGT
Trigger: GGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAG...GCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCTTAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR CAA 72 bp AGATTTCTAACACCACCTACTTGGAGAGATAGGGAATaGGGACTATGCCAGTCACCATCAGCTAAAACATCA +
Preference number: 4 (lower is better)
Translates to: RFLTPPTWRDRE*GLCQSPSAKTS
Trigger: TGATGTTTTAGCTGATGGTGACTGGCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
3UTR CAA 72 bp AAAGATGGCATGCTATTTAAGATGAGCTTAATTCCATaGGTCGCCAGGAAACCATTCCAATCCCCACACTCA +
Preference number: 4 (lower is better)
Translates to: KDGMLFKMSLIP*VARKPFQSPHS
Trigger: TGAGTGTGGGGATTGGAATGGTTTCCTGGCGACCAATGGAATTAAGCTCATCTTAAATAGCATGCCATCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR GCA 90 bp GAATTAAGATTTCTAACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCATGCAGCCGATACATTaGCCACGAAAATCTTCCAAG +
Preference number: 4 (lower is better)
Translates to: ELRFLTPPTWRDRELGLCMQPIH*PRKSSK
Trigger: CTTGGAAGATTTTCGTGGGCAATGTATCGGCTGCAT...GCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCTTAATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 90 bp CGAGCGCGCGACCTGGACGCAGCTCGTGGCCATGCAGGGCCTCGATaGCGCGCACCGCGCCAGCGTTCTCGCGCATGTGCACGAAGGCAA +
Preference number: 5 (lower is better)
Translates to: RARDLDAARGHAGPR*RAPRQRSRACARRQ
Trigger: TTGCCTTCGTGCACATGCGCGAGAACGCTGGCGCGGTGCGCGCCATCGAGGCCCTGCATGGCCACGAGCTGCGTCCAGGTCGCGCGCTCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS TCA 90 bp GGCTGGCTGGGCCGTCAGAGGCGCCACATAAGAGGCTCGAGGAGGTaGACGGCGCAGGGGGCTGCGGTCGCGACCAAAGAATGGTGGTGT +
Preference number: 5 (lower is better)
Translates to: GWLGRQRRHIRGSRR*TAQGAAVATKEWWC
Trigger: ACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS TCA 90 bp CAAAGAGGCGGAAGGCTGGGCCCTATATGCAGCTCCCAGAGACACTaGGGGTTGGGCCCGGTAGGTGGCTGGCTGGGCCGTCAGAGGCGC +
Preference number: 5 (lower is better)
Translates to: QRGGRLGPICSSQRH*GLGPVGGWLGRQRR
Trigger: GCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCCGCCTCTTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS TCA 90 bp GTTGGCGTTGGCAACGGCCCCCTGGGACATAGACAGGTAGGCTGCTaGTGGCTGGCCTGTCCCATCGTAGGCACTGCCCGGCTGGCCACG +
Preference number: 5 (lower is better)
Translates to: VGVGNGPLGHRQVGC*WLACPIVGTARLAT
Trigger: CGTGGCCAGCCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCCAACGCCAAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 90 bp GAGGCGCCACATAAGAGGCTCGAGGAGGTGAACGGCGCAGGGGGCTaGGGTCGCGACCAAAGAATGGTGGTGTGGGCTGACGGGCTTGCC +
Preference number: 5 (lower is better)
Translates to: EAPHKRLEEVNGAGG*GRDQRMVVWADGLA
Trigger: GGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 90 bp GTAAGGAGCTGCCAGGGTGGCAGAAGGCTGAGCCCCGTAAGCAGCTaGCGCCCCATAGGAGCCAGTGGCCGCAGCAGCAGACTGAGCTCC +
Preference number: 5 (lower is better)
Translates to: VRSCQGGRRLSPVSS*RPIGASGRSSRLSS
Trigger: GGAGCTCAGTCTGCTGCTGCGGCCACTGGCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS TCA 90 bp CGGCGCAGGGGGCTGCGGTCGCGACCAAAGAATGGTGGTGTGGGCTaGCGGGCTTGCCCATCAAAGCCACCAGTGCTGTTGCCAAAAGCC +
Preference number: 5 (lower is better)
Translates to: RRRGLRSRPKNGGVG*RACPSKPPVLLPKA
Trigger: GGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 90 bp TGCAGGGCCTCGATGGCGCGCACCGCGCCAGCGTTCTCGCGCATGTaGACGAAGGCAAACTGTTTCATGACGGCGCAGCTCATGACCGTG +
Preference number: 5 (lower is better)
Translates to: CRASMARTAPAFSRM*TKANCFMTAQLMTV
Trigger: CACGGTCATGAGCTGCGCCGTCATGAAACAGTTTGCCTTCGTGCACATGCGCGAGAACGCTGGCGCGGTGCGCGCCATCGAGGCCCTGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS CCA 90 bp CCCTATATGCAGCTCCCAGAGACACTGAGGGTTGGGCCCGGTAGGTaGCTGGCTGGGCCGTCAGAGGCGCCACATAAGAGGCTCGAGGAG +
Preference number: 5 (lower is better)
Translates to: PYMQLPETLRVGPGR*LAGPSEAPHKRLEE
Trigger: CTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 90 bp CATGACGGCGCAGCTCATGACCGTGCCATAGGGCGCGAAGAGAGCTaGCAACTCCTCCGGTGTCGTATCCGCCCCATCGACATTGCCCAC +
Preference number: 5 (lower is better)
Translates to: HDGAAHDRAIGREES*QLLRCRIRPIDIAH
Trigger: GTGGGCAATGTCGATGGGGCGGATACGACACCGGAGGAGTTGGCAGCTCTCTTCGCGCCCTATGGCACGGTCATGAGCTGCGCCGTCATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS CCA 90 bp GTGAACGGCGCAGGGGGCTGCGGTCGCGACCAAAGAATGGTGGTGTaGGCTGACGGGCTTGCCCATCAAAGCCACCAGTGCTGTTGCCAA +
Preference number: 5 (lower is better)
Translates to: VNGAGGCGRDQRMVV*ADGLAHQSHQCCCQ
Trigger: TTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 90 bp CAGCCAATGAGGCTGATGACTGAGTGCGGTAAGGAGCTGCCAGGGTaGCAGAAGGCTGAGCCCCGTAAGCAGCTGCCGCCCCATAGGAGC +
Preference number: 5 (lower is better)
Translates to: QPMRLMTECGKELPG*QKAEPRKQLPPHRS
Trigger: GCTCCTATGGGGCGGCAGCTGCTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp CGGAATGGGCATCGGGCAGGCGACGGTAATCCAGCGAGGACTTTGTCGGCGAGCTGTGGGCTGACGGGCTaGCCCATCAAAGCCACCAGT +
Preference number: 5 (lower is better)
Translates to: RNGHRAGDGNPARTLSASCGLTG*PIKATS
Trigger: ACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACA...GCTCGCCGACAAAGTCCTCGCTGGATTACCGTCGCCTGCCCGATGCCCATTCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS CCA 90 bp AGCTGCAGCAGACTGGGAACTAGGGCTAGCCAGCTGACCCCTGTATaGGGCCCCAAGGGAGACAGAGGGCTGAGCACGGTAAGAAGCTGC +
Preference number: 5 (lower is better)
Translates to: SCSRLGTRASQLTPV*GPKGDRGLSTVRSC
Trigger: GCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 90 bp CCCAAGGGAGACAGAGGGCTGAGCACGGTAAGAAGCTGCCTGAGCTaGCATGGGCTGAGTCCGATAGCCAACACCCAAAGAGGCGGAAGG +
Preference number: 5 (lower is better)
Translates to: PKGDRGLSTVRSCLS*HGLSPIANTQRGGR
Trigger: CCTTCCGCCTCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 90 bp GCTGCTGGGCAGCATAGGAAGCAGCCAATGAGGCTGATGACTGAGTaGGGTAAGGAGCTGCCAGGGTGGCAGAAGGCTGAGCCCCGTAAG +
Preference number: 5 (lower is better)
Translates to: AAGQHRKQPMRLMTE*GKELPGWQKAEPRK
Trigger: CTTACGGGGCTCAGCCTTCTGCCACCCTGGCAGCTCCTTACCGCACTCAGTCATCAGCCTCATTGGCTGCTTCCTATGCTGCCCAGCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp TGCCTTTCTTCTAGCTGTCACGTCTTCCTGGATGTCAAACTGGCTCACCTGACAGGCGGCGGGGTGCTGTaGGCGTTGGCAACGGCCCCC +
Preference number: 5 (lower is better)
Translates to: CLSSSCHVFLDVKLAHLTGGGVL*ALATAP
Trigger: GGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCC...TGTCAGGTGAGCCAGTTTGACATCCAGGAAGACGTGACAGCTAGAAGAAAGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CAA 90 bp CTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACGGCGGCGGGGTGCTGTaGGCGTTGGCAACGGCCCCC +
Preference number: 5 (lower is better)
Translates to: LASKKKNAPPDISCRLYHGGGVL*ALATAP
Trigger: GGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCC...GTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 90 bp GTGGTGTGGGCTGACGGGCTTGCCCATCAAAGCCACCAGTGCTGTTaGCAAAAGCCTGCTGGTAGTCGAAGGTGGCAGAGAAGCCACCAG +
Preference number: 5 (lower is better)
Translates to: VVWADGLAHQSHQCC*QKPAGSRRWQRSHQ
Trigger: CTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 90 bp GTATGGGGCCCCAAGGGAGACAGAGGGCTGAGCACGGTAAGAAGCTaGCTGAGCTGCCATGGGCTGAGTCCGATAGCCAACACCCAAAGA +
Preference number: 5 (lower is better)
Translates to: VWGPKGDRGLSTVRS*LSCHGLSPIANTQR
Trigger: TCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 90 bp CGCACGAACCCCATACGAAGAGGCAGCCTGGGCGCCATAAGAGGATaGCTGGTTACCATAGGAAGCAAGGGAGGAGCCCTGAGCCCCATA +
Preference number: 5 (lower is better)
Translates to: RTNPIRRGSLGAIRG*LVTIGSKGGALSPI
Trigger: TATGGGGCTCAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGGGTTCGTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp GGAACGAAAGCTGCGACTCTGATAAACGGCGGTAATCAGAGAGCTCGGCTAAACGGGGTGCTGTTGGCGTaGGCAACGGCCCCCTGGGAC +
Preference number: 5 (lower is better)
Translates to: GTKAATLINGGNQRARLNGVLLA*ATAPWD
Trigger: GTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCC...GTTTAGCCGAGCTCTCTGATTACCGCCGTTTATCAGAGTCGCAGCTTTCGTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS GCA 90 bp AACTGGTTGAGCCCCATAGGAACCAGCCATTGGGGTAGTGGCTTGTaGAGCATAGGCAGCTGGCTGGCTAGCATAGGCAGCAGCTGTGGC +
Preference number: 5 (lower is better)
Translates to: NWLSPIGTSHWGSGL*SIGSWLASIGSSCG
Trigger: GCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 90 bp CAAAGCCACCAGTGCTGTTGCCAAAAGCCTGCTGGTAGTCGAAGGTaGCAGAGAAGCCACCAGTTCCAGGGAATGCTGTGTCCCCAGCCC +
Preference number: 5 (lower is better)
Translates to: QSHQCCCQKPAGSRR*QRSHQFQGMLCPQP
Trigger: GGGCTGGGGACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS TCA 90 bp CCCAGACTGGATAGCCAGGGCAGGCCCCTTCTTCTGCCCCTTGGTTaGGAGTTCCACGTTGATGCGCTTGCCCTTCACTTCTTTGCCGTT +
Preference number: 5 (lower is better)
Translates to: PRLDSQGRPLLLPLG*EFHVDALALHFFAV
Trigger: AACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 90 bp AGAATGGTGGTGTGGGCTGACGGGCTTGCCCATCAAAGCCACCAGTaGTGTTGCCAAAAGCCTGCTGGTAGTCGAAGGTGGCAGAGAAGC +
Preference number: 5 (lower is better)
Translates to: RMVVWADGLAHQSHQ*CCQKPAGSRRWQRS
Trigger: GCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp GCTCCAGGTAGGCCTAGGGGAGATGCCATTGGGGACAGGGAGGGTATACCAGATTTGCCCTTCACTTCTTaGCCGTTGAGCTGCGCGATG +
Preference number: 5 (lower is better)
Translates to: APGRPRGDAIGDREGIPDLPFTS*PLSCAM
Trigger: CATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAA...ATCTGGTATACCCTCCCTGTCCCCAATGGCATCTCCCCTAGGCCTACCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp TCCAGCGAGGACTTTGTCGGCGAGCGGCGGAACGAAAGCTGCGACTCTGATAAAAGCAGCTGTGGCTGGTaGTGCCACATAAGCAGCAGG +
Preference number: 5 (lower is better)
Translates to: SSEDFVGERRNESCDSDKSSCGW*CHISSR
Trigger: CCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCT...TTTATCAGAGTCGCAGCTTTCGTTCCGCCGCTCGCCGACAAAGTCCTCGCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp GGGAGAGGTATGAGAGAGGGTGGTGATAACCTGGGTCTGCACCCTACCCTACCTCATTGGGGTAGTGGCTaGTGCAGCATAGGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: GRGMREGGDNLGLHPTLPHWGSG*CSIGSW
Trigger: CCAGCTGCCTATGCTGCACAAGCCACTACCCCAATG...AGGTAGGGTAGGGTGCAGACCCAGGTTATCACCACCCTCTCTCATACCTCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 90 bp ATAGGAACCAGCCATTGGGGTAGTGGCTTGTGCAGCATAGGCAGCTaGCTGGCTAGCATAGGCAGCAGCTGTGGCTGGTTGTGCCACATA +
Preference number: 5 (lower is better)
Translates to: IGTSHWGSGLCSIGS*LASIGSSCGWLCHI
Trigger: TATGTGGCACAACCAGCCACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 90 bp CAGCTGGGTCTGAACAACTGGTTGAGCCCCATAGGAACCAGCCATTaGGGTAGTGGCTTGTGCAGCATAGGCAGCTGGCTGGCTAGCATA +
Preference number: 5 (lower is better)
Translates to: QLGLNNWLSPIGTSH*GSGLCSIGSWLASI
Trigger: TATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACCCAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp TTCCACACCCACTCTGGGTCTTCAGGCTGCCTTTCTTCTAGCTGTCACGTCTTCTGCGCGATGGCGGCTTaGGCATCTGCTTCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: FHTHSGSSGCLSSSCHVFCAMAA*ASASFS
Trigger: GGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCA...GAAGACGTGACAGCTAGAAGAAAGGCAGCCTGAAGACCCAGAGTGGGTGTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CAA 90 bp CCCCACACTCAAGCACCCTTCCACACCCACTCTGGGTCTTCAGGCTGCCTTTCTGTTGAGAGTTCCACGTaGATGCGCTTGCCCTTCACT +
Preference number: 5 (lower is better)
Translates to: PHTQAPFHTHSGSSGCLSVESST*MRLPFT
Trigger: AGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAAC...AGAAAGGCAGCCTGAAGACCCAGAGTGGGTGTGGAAGGGTGCTTGAGTGTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CAA 90 bp GCCTCCCTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGCATTGGGGTAGTGGCTaGTGCAGCATAGGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: ASLASKKKNAPPDISCRLHWGSG*CSIGSW
Trigger: CCAGCTGCCTATGCTGCACAAGCCACTACCCCAATG...CAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAGGGAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 90 bp CGAAGAGGCTGCGCAATTCCTGACTTGTACATGCAGCCGATACATTaGCCACGAAAATCTTCCAAGTGTTCAGGGGCCTCGGGCGCGACA +
Preference number: 5 (lower is better)
Translates to: RRGCAIPDLYMQPIH*PRKSSKCSGASGAT
Trigger: TGTCGCGCCCGAGGCCCCTGAACACTTGGAAGATTTTCGTGGGCAATGTATCGGCTGCATGTACAAGTCAGGAATTGCGCAGCCTCTTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS GCA 90 bp GCGTCCACGGCGCTCGAAGAGGCTGCGCAATTCCTGACTTGTACATaGAGCCGATACATTGCCCACGAAAATCTTCCAAGTGTTCAGGGG +
Preference number: 5 (lower is better)
Translates to: ASTALEEAAQFLTCT*SRYIAHENLPSVQG
Trigger: CCCCTGAACACTTGGAAGATTTTCGTGGGCAATGTATCGGCTGCATGTACAAGTCAGGAATTGCGCAGCCTCTTCGAGCGCCGTGGACGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS-3UTR CAA 90 bp ATTATAGGAGCCCGAATAGCGTGCGTAATCGGAATGGGCATCGGGCAGGCGACGGTTGAGAGTTCCACGTaGATGCGCTTGCCCTTCACT +
Preference number: 5 (lower is better)
Translates to: IIGARIACVIGMGIGQATVESST*MRLPFT
Trigger: AGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAAC...CGTCGCCTGCCCGATGCCCATTCCGATTACGCACGCTATTCGGGCTCCTATAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp GTGGTAAGCGGGGATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTCCCTTCTTCTGCCCCTaGGTTGAGAGTTCCACGTTG +
Preference number: 5 (lower is better)
Translates to: VVSGDLDTDQLTVPQDLSPFFCP*VESSTL
Trigger: CAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGG...ACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp TTCCACACCCACTCTGGGTCTTCAGGCTGCCTTTCTTCTAGCTGTCACGTCTTCAGCAGCTGTGGCTGGTaGTGCCACATAAGCAGCAGG +
Preference number: 5 (lower is better)
Translates to: FHTHSGSSGCLSSSCHVFSSCGW*CHISSR
Trigger: CCTGCTGCTTATGTGGCACAACCAGCCACAGCTGCT...GAAGACGTGACAGCTAGAAGAAAGGCAGCCTGAAGACCCAGAGTGGGTGTGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS TCA 90 bp CACTCGATGACGCGTCCACGGCGCTCGAAGAGGCTGCGCAATTCCTaGCTTGTACATGCAGCCGATACATTGCCCACGAAAATCTTCCAA +
Preference number: 5 (lower is better)
Translates to: HSMTRPRRSKRLRNS*LVHAADTLPTKIFQ
Trigger: TTGGAAGATTTTCGTGGGCAATGTATCGGCTGCATGTACAAGTCAGGAATTGCGCAGCCTCTTCGAGCGCCGTGGACGCGTCATCGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS-3UTR CAA 90 bp CCCCACACTCAAGCACCCTTCCACACCCACTCTGGGTCTTCAGGCTGCCTTTCTCATGCAGCCGATACATaGCCCACGAAAATCTTCCAA +
Preference number: 5 (lower is better)
Translates to: PHTQAPFHTHSGSSGCLSHAADT*PTKIFQ
Trigger: TTGGAAGATTTTCGTGGGCAATGTATCGGCTGCATG...AGAAAGGCAGCCTGAAGACCCAGAGTGGGTGTGGAAGGGTGCTTGAGTGTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CAA 90 bp GATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTCTCAACAGCCTCCCTGGTTTCTTGGTCTaGTCCCCAGACTGGATAGCC +
Preference number: 5 (lower is better)
Translates to: DLDTDQLTVPQDLSLNSLPGFLV*SPDWIA
Trigger: GGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGG...GAGGCTGTTGAGACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp ACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCCAGTCACCATCAGCTTGTGGGCTGACGGGCTaGCCCATCAAAGCCACCAGT +
Preference number: 5 (lower is better)
Translates to: TPPTWRDRELGLCQSPSACGLTG*PIKATS
Trigger: ACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACA...AGCTGATGGTGACTGGCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp GGGAGAGGTATGAGAGAGGGTGGTGATAACCTGGGTCTGCACCCTACCCTACCTCATGCAGCCGATACATaGCCCACGAAAATCTTCCAA +
Preference number: 5 (lower is better)
Translates to: GRGMREGGDNLGLHPTLPHAADT*PTKIFQ
Trigger: TTGGAAGATTTTCGTGGGCAATGTATCGGCTGCATG...AGGTAGGGTAGGGTGCAGACCCAGGTTATCACCACCCTCTCTCATACCTCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp AGAACGACGGACGAAAGTAGGGTCCCCAACTTCCCAGGGTGGACGCACCTCATATGCGCAATTCCTGACTaGTACATGCAGCCGATACAT +
Preference number: 5 (lower is better)
Translates to: RTTDESRVPNFPGWTHLICAIPD*YMQPIH
Trigger: ATGTATCGGCTGCATGTACAAGTCAGGAATTGCGCA...TATGAGGTGCGTCCACCCTGGGAAGTTGGGGACCCTACTTTCGTCCGTCGTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp CCCACTCATGGGCCCTGCACAAAAAGACCTTGGTTTATCAACAGAACGACGGACGGTCTGAACAACTGGTaGAGCCCCATAGGAACCAGC +
Preference number: 5 (lower is better)
Translates to: PTHGPCTKRPWFINRTTDGLNNW*SPIGTS
Trigger: GCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACC...GTCCGTCGTTCTGTTGATAAACCAAGGTCTTTTTGTGCAGGGCCCATGAGTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS GCA 90 bp CTTCACTTCTTTGCCGTTGAGCTGCGCGATGGCGGCTTTGGCATCTaGTTCCTTCTCCATGTGAACAAACGCGTAGTCTTTTACCACGTC +
Preference number: 5 (lower is better)
Translates to: LHFFAVELRDGGFGI*FLLHVNKRVVFYHV
Trigger: GACGTGGTAAAAGACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp GTGGTAAGCGGGGATTTGGACACGGACCAACTGACTGTCCCACAGGATCTCAGTTGCGCAATTCCTGACTaGTACATGCAGCCGATACAT +
Preference number: 5 (lower is better)
Translates to: VVSGDLDTDQLTVPQDLSCAIPD*YMQPIH
Trigger: ATGTATCGGCTGCATGTACAAGTCAGGAATTGCGCA...ACTGAGATCCTGTGGGACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp CAGTCACCATCAGCTAAAACATCAGTGGTAAGCGGGGATTTGGACACGGACCAATTGCCCTTCACTTCTTaGCCGTTGAGCTGCGCGATG +
Preference number: 5 (lower is better)
Translates to: QSPSAKTSVVSGDLDTDQLPFTS*PLSCAM
Trigger: CATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAA...TTGGTCCGTGTCCAAATCCCCGCTTACCACTGATGTTTTAGCTGATGGTGACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp GCCTCCCTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGGGAAGAAGCTGCTCCTaGTGTGTTATAGGAAGAAGC +
Preference number: 5 (lower is better)
Translates to: ASLASKKKNAPPDISCRLGRSCS*CVIGRS
Trigger: GCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCC...CAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAGGGAGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp CGTGATCAACTAAAATTGATTGCTGAGAAAGTCCAACCACTTGATCTGAACTCTGGGGTGCTGTTGGCGTaGGCAACGGCCCCCTGGGAC +
Preference number: 5 (lower is better)
Translates to: RDQLKLIAEKVQPLDLNSGVLLA*ATAPWD
Trigger: GTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCC...AGAGTTCAGATCAAGTGGTTGGACTTTCTCAGCAATCAATTTTAGTTGATCACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CAA 90 bp AAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACCTCCAAACACCCTTCTTCTGCCCCTaGGTTGAGAGTTCCACGTTG +
Preference number: 5 (lower is better)
Translates to: KKKNAPPDISCRLYHLQTPFFCP*VESSTL
Trigger: CAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGG...TGTTTGGAGGTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp GGCACAGAGGAAATAGCTAAAGTAACCCTTTCCTGGCCTCCCTCGCATCTAAAAGGTCTGAACAACTGGTaGAGCCCCATAGGAACCAGC +
Preference number: 5 (lower is better)
Translates to: GTEEIAKVTLSWPPSHLKGLNNW*SPIGTS
Trigger: GCTGGTTCCTATGGGGCTCAACCAGTTGTTCAGACC...TTTTAGATGCGAGGGAGGCCAGGAAAGGGTTACTTTAGCTATTTCCTCTGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp CGGTTGTATCACCTCCAAACAACCTTAAGTATCGCGCACAAAAATAAAAGGGAGAATCCAGCGAGGACTTaGTCGGCGAGCGGCGGAACG +
Preference number: 5 (lower is better)
Translates to: RLYHLQTTLSIAHKNKRENPART*SASGGT
Trigger: CGTTCCGCCGCTCGCCGACAAAGTCCTCGCTGGATT...CTCCCTTTTATTTTTGTGCGCGATACTTAAGGTTGTTTGGAGGTGATACAACCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CAA 90 bp TCAGCTAAAACATCAGTGGTAAGCGGGGATTTGGACACGGACCAACTGACTGTCATAAGAAGCAGCCTGTaGTGCAGCATATGGGGCAGA +
Preference number: 5 (lower is better)
Translates to: SAKTSVVSGDLDTDQLTVIRSSL*CSIWGR
Trigger: TCTGCCCCATATGCTGCACAACAGGCTGCTTCTTAT...GACAGTCAGTTGGTCCGTGTCCAAATCCCCGCTTACCACTGATGTTTTAGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp CTTTCTTCTAGCTGTCACGTCTTCCTGGATGTCAAACTGGCTCACCTGACAGTGCGGAACCATACCTTTTaGACATGGCGACAGCCTTTT +
Preference number: 5 (lower is better)
Translates to: LSSSCHVFLDVKLAHLTVRNHTF*TWRQPF
Trigger: AAAAGGCTGTCGCCATGTCAAAAAGGTATGGTTCCG...CACTGTCAGGTGAGCCAGTTTGACATCCAGGAAGACGTGACAGCTAGAAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CAA 90 bp GTCCAACCACTTGATCTGAACTCTCTAGTCCCAAAGATGGCATGCTATTTAAGATCCACGTTGATGCGCTaGCCCTTCACTTCTTTGCCG +
Preference number: 5 (lower is better)
Translates to: VQPLDLNSLVPKMACYLRSTLMR*PFTSLP
Trigger: CGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGA...TCTTAAATAGCATGCCATCTTTGGGACTAGAGAGTTCAGATCAAGTGGTTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006625.8
CDS-3UTR CAA 90 bp CGGTTGTATCACCTCCAAACAACCTTAAGTATCGCGCACAAAAATAAAAGGGAGTCCACGTTGATGCGCTaGCCCTTCACTTCTTTGCCG +
Preference number: 5 (lower is better)
Translates to: RLYHLQTTLSIAHKNKRESTLMR*PFTSLP
Trigger: CGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGA...CTCCCTTTTATTTTTGTGCGCGATACTTAAGGTTGTTTGGAGGTGATACAACCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp CTCGCATCTAAAAAGAAAAACGCGCCGCCTGACATCAGCTGTCGGTTGTATCACGCATACAGTACCTTTTaGACATGGCGACAGCCTTTT +
Preference number: 5 (lower is better)
Translates to: LASKKKNAPPDISCRLYHAYSTF*TWRQPF
Trigger: AAAAGGCTGTCGCCATGTCAAAAAGGTACTGTATGC...GTGATACAACCGACAGCTGATGTCAGGCGGCGCGTTTTTCTTTTTAGATGCGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp GAATTAAGATTTCTAACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCCCTGGTTTCTTGGTCTaGTCCCCAGACTGGATAGCC +
Preference number: 5 (lower is better)
Translates to: ELRFLTPPTWRDRELGLCPGFLV*SPDWIA
Trigger: GGCTATCCAGTCTGGGGACAAGACCAAGAAACCAGG...GCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCTTAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp AGGATCCTTCAGACAGTGGGAAAAATCTATGAGCCAATCCTGCAAAATGTGGCTATAAGAAGCAGCCTGTaGTGCAGCATATGGGGCAGA +
Preference number: 5 (lower is better)
Translates to: RILQTVGKIYEPILQNVAIRSSL*CSIWGR
Trigger: TCTGCCCCATATGCTGCACAACAGGCTGCTTCTTAT...AGCCACATTTTGCAGGATTGGCTCATAGATTTTTCCCACTGTCTGAAGGATCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113793.4
CDS-3UTR CAA 90 bp GAATTAAGATTTCTAACACCACCTACTTGGAGAGATAGGGAATTGGGACTATGCGGAAGAAGCTGCTCCTaGTGTGTTATAGGAAGAAGC +
Preference number: 5 (lower is better)
Translates to: ELRFLTPPTWRDRELGLCGRSCS*CVIGRS
Trigger: GCTTCTTCCTATAACACACAAGGAGCAGCTTCTTCC...GCATAGTCCCAATTCCCTATCTCTCCAAGTAGGTGGTGTTAGAAATCTTAATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 72 bp ACCACGAGCGCGCGACCTGGACGCAGCTCGTGGCCATaGAGGGCCTCGATGGCGCGCACCGCGCCAGCGTTC +
Preference number: 6 (lower is better)
Translates to: TTSARPGRSSWP*RASMARTAPAF
Trigger: GAACGCTGGCGCGGTGCGCGCCATCGAGGCCCTGCATGGCCACGAGCTGCGTCCAGGTCGCGCGCTCGTGGT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS CCA 72 bp GACCTGGACGCAGCTCGTGGCCATGCAGGGCCTCGATaGCGCGCACCGCGCCAGCGTTCTCGCGCATGTGCA +
Preference number: 6 (lower is better)
Translates to: DLDAARGHAGPR*RAPRQRSRACA
Trigger: TGCACATGCGCGAGAACGCTGGCGCGGTGCGCGCCATCGAGGCCCTGCATGGCCACGAGCTGCGTCCAGGTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS TCA 72 bp GGCCGTCAGAGGCGCCACATAAGAGGCTCGAGGAGGTaGACGGCGCAGGGGGCTGCGGTCGCGACCAAAGAA +
Preference number: 6 (lower is better)
Translates to: GRQRRHIRGSRR*TAQGAAVATKE
Trigger: TTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATGTGGCGCCTCTGACGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS TCA 72 bp GGAAGGCTGGGCCCTATATGCAGCTCCCAGAGACACTaGGGGTTGGGCCCGGTAGGTGGCTGGCTGGGCCGT +
Preference number: 6 (lower is better)
Translates to: GRLGPICSSQRH*GLGPVGGWLGR
Trigger: ACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTGCATATAGGGCCCAGCCTTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS TCA 72 bp GGCAACGGCCCCCTGGGACATAGACAGGTAGGCTGCTaGTGGCTGGCCTGTCCCATCGTAGGCACTGCCCGG +
Preference number: 6 (lower is better)
Translates to: GNGPLGHRQVGC*WLACPIVGTAR
Trigger: CCGGGCAGTGCCTACGATGGGACAGGCCAGCCATCAGCAGCCTACCTGTCTATGTCCCAGGGGGCCGTTGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 72 bp ACGGCGCAGGGGGCTGCGGTCGCGACCAAAGAATGGTaGTGTGGGCTGACGGGCTTGCCCATCAAAGCCACC +
Preference number: 6 (lower is better)
Translates to: TAQGAAVATKEW*CGLTGLPIKAT
Trigger: GGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 72 bp CAGCTCCCAGAGACACTGAGGGTTGGGCCCGGTAGGTaGCTGGCTGGGCCGTCAGAGGCGCCACATAAGAGG +
Preference number: 6 (lower is better)
Translates to: QLPETLRVGPGR*LAGPSEAPHKR
Trigger: CCTCTTATGTGGCGCCTCTGACGGCCCAGCCAGCCACCTACCGGGCCCAACCCTCAGTGTCTCTGGGAGCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 72 bp GCAGGGGGCTGCGGTCGCGACCAAAGAATGGTGGTGTaGGCTGACGGGCTTGCCCATCAAAGCCACCAGTGC +
Preference number: 6 (lower is better)
Translates to: AGGCGRDQRMVV*ADGLAHQSHQC
Trigger: GCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 72 bp GCAGCTCATGACCGTGCCATAGGGCGCGAAGAGAGCTaGCAACTCCTCCGGTGTCGTATCCGCCCCATCGAC +
Preference number: 6 (lower is better)
Translates to: AAHDRAIGREES*QLLRCRIRPID
Trigger: GTCGATGGGGCGGATACGACACCGGAGGAGTTGGCAGCTCTCTTCGCGCCCTATGGCACGGTCATGAGCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS GCA 72 bp TCGATGGCGCGCACCGCGCCAGCGTTCTCGCGCATGTaGACGAAGGCAAACTGTTTCATGACGGCGCAGCTC +
Preference number: 6 (lower is better)
Translates to: SMARTAPAFSRM*TKANCFMTAQL
Trigger: GAGCTGCGCCGTCATGAAACAGTTTGCCTTCGTGCACATGCGCGAGAACGCTGGCGCGGTGCGCGCCATCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS GCA 72 bp CATAAGAGGCTCGAGGAGGTGAACGGCGCAGGGGGCTaGGGTCGCGACCAAAGAATGGTGGTGTGGGCTGAC +
Preference number: 6 (lower is better)
Translates to: HKRLEEVNGAGG*GRDQRMVVWAD
Trigger: GTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCCCTGCGCCGTTCACCTCCTCGAGCCTCTTATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS TCA 72 bp GGGCTGCGGTCGCGACCAAAGAATGGTGGTGTGGGCTaGCGGGCTTGCCCATCAAAGCCACCAGTGCTGTTG +
Preference number: 6 (lower is better)
Translates to: GLRSRPKNGGVG*RACPSKPPVLL
Trigger: CAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 72 bp GGGCTGGACTCCACCATATGGGCCAAGCGAGGAAGCTaGAGCAGACTGGGAACTAGGGCTAGCCAGCTGACC +
Preference number: 6 (lower is better)
Translates to: GLDSTIWAKRGS*SRLGTRASQLT
Trigger: GGTCAGCTGGCTAGCCCTAGTTCCCAGTCTGCTGCAGCTTCCTCGCTTGGCCCATATGGTGGAGTCCAGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 72 bp AGACTGGGAACTAGGGCTAGCCAGCTGACCCCTGTATaGGGCCCCAAGGGAGACAGAGGGCTGAGCACGGTA +
Preference number: 6 (lower is better)
Translates to: RLGTRASQLTPV*GPKGDRGLSTV
Trigger: TACCGTGCTCAGCCCTCTGTCTCCCTTGGGGCCCCATACAGGGGTCAGCTGGCTAGCCCTAGTTCCCAGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 90 bp GGGGCTGCGGTCGCGACCAAAGAATGGTGGTGTGGGCTGACGGGCTaGCCCATCAAAGCCACCAGTGCTGTTGCCAAAAGCCTGCTGGTA +
Preference number: 6 (lower is better)
Translates to: GAAVATKEWWCGLTG*PIKATSAVAKSLLV
Trigger: TACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGACCGCAGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 72 bp CCCAAGGGAGACAGAGGGCTGAGCACGGTAAGAAGCTaGCTGAGCTGCCATGGGCTGAGTCCGATAGCCAAC +
Preference number: 6 (lower is better)
Translates to: PKGDRGLSTVRS*LSCHGLSPIAN
Trigger: GTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTCTCCCTTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 90 bp GCCAGGGCAGGCCCCTTCTTCTGCCCCTTGGTTGAGAGTTCCACGTaGATGCGCTTGCCCTTCACTTCTTTGCCGTTGAGCTGCGCGATG +
Preference number: 6 (lower is better)
Translates to: ARAGPFFCPLVESST*MRLPFTSLPLSCAM
Trigger: CATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 72 bp GTGTGGGCTGACGGGCTTGCCCATCAAAGCCACCAGTaGTGTTGCCAAAAGCCTGCTGGTAGTCGAAGGTGG +
Preference number: 6 (lower is better)
Translates to: VWADGLAHQSHQ*CCQKPAGSRRW
Trigger: CCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 72 bp AGCCCCATAGGAACCAGCCATTGGGGTAGTGGCTTGTaGAGCATAGGCAGCTGGCTGGCTAGCATAGGCAGC +
Preference number: 6 (lower is better)
Translates to: SPIGTSHWGSGL*SIGSWLASIGS
Trigger: GCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 72 bp CCCATACGAAGAGGCAGCCTGGGCGCCATAAGAGGATaGCTGGTTACCATAGGAAGCAAGGGAGGAGCCCTG +
Preference number: 6 (lower is better)
Translates to: PIRRGSLGAIRG*LVTIGSKGGAL
Trigger: CAGGGCTCCTCCCTTGCTTCCTATGGTAACCAGCCATCCTCTTATGGCGCCCAGGCTGCCTCTTCGTATGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 72 bp GACTGGATAGCCAGGGCAGGCCCCTTCTTCTGCCCCTaGGTTGAGAGTTCCACGTTGATGCGCTTGCCCTTC +
Preference number: 6 (lower is better)
Translates to: DWIARAGPFFCP*VESSTLMRLPF
Trigger: GAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATCCAGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 90 bp GGCCCCTTCTTCTGCCCCTTGGTTGAGAGTTCCACGTTGATGCGCTaGCCCTTCACTTCTTTGCCGTTGAGCTGCGCGATGGCGGCTTTG +
Preference number: 6 (lower is better)
Translates to: GPFFCPLVESSTLMR*PFTSLPLSCAMAAL
Trigger: CAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS TCA 72 bp GATAGCCAGGGCAGGCCCCTTCTTCTGCCCCTTGGTTaGGAGTTCCACGTTGATGCGCTTGCCCTTCACTTC +
Preference number: 6 (lower is better)
Translates to: DSQGRPLLLPLG*EFHVDALALHF
Trigger: GAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCCTGCCCTGGCTATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS TCA 72 bp CGGTCGGAACCATACCTTTTACCACGTCACACTCGATaGCGCGTCCACGGCGCTCGAAGAGGCTGCGCAATT +
Preference number: 6 (lower is better)
Translates to: RSEPYLLPRHTR*RVHGARRGCAI
Trigger: AATTGCGCAGCCTCTTCGAGCGCCGTGGACGCGTCATCGAGTGTGACGTGGTAAAAGGTATGGTTCCGACCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180008.2
CDS GCA 72 bp GCTGACGGGCTTGCCCATCAAAGCCACCAGTGCTGTTaGCAAAAGCCTGCTGGTAGTCGAAGGTGGCAGAGA +
Preference number: 6 (lower is better)
Translates to: ADGLAHQSHQCC*QKPAGSRRWQR
Trigger: TCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 72 bp GACAGAGGGCTGAGCACGGTAAGAAGCTGCCTGAGCTaGCATGGGCTGAGTCCGATAGCCAACACCCAAAGA +
Preference number: 6 (lower is better)
Translates to: DRGLSTVRSCLS*HGLSPIANTQR
Trigger: TCTTTGGGTGTTGGCTATCGGACTCAGCCCATGGCAGCTCAGGCAGCTTCTTACCGTGCTCAGCCCTCTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 72 bp TCCACGTTGATGCGCTTGCCCTTCACTTCTTTGCCGTaGAGCTGCGCGATGGCGGCTTTGGCATCTGCTTCC +
Preference number: 6 (lower is better)
Translates to: STLMRLPFTSLP*SCAMAALASAS
Trigger: GGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 72 bp GTCGCGACCAAAGAATGGTGGTGTGGGCTGACGGGCTaGCCCATCAAAGCCACCAGTGCTGTTGCCAAAAGC +
Preference number: 6 (lower is better)
Translates to: VATKEWWCGLTG*PIKATSAVAKS
Trigger: GCTTTTGGCAACAGCACTGGTGGCTTTGATGGGCAAGCCCGTCAGCCCACACCACCATTCTTTGGTCGCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 72 bp TTGAGCCCCATAGGAACCAGCCATTGGGGTAGTGGCTaGTGCAGCATAGGCAGCTGGCTGGCTAGCATAGGC +
Preference number: 6 (lower is better)
Translates to: LSPIGTSHWGSG*CSIGSWLASIG
Trigger: GCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 90 bp CCCTTGGTTGAGAGTTCCACGTTGATGCGCTTGCCCTTCACTTCTTaGCCGTTGAGCTGCGCGATGGCGGCTTTGGCATCTGCTTCCTTC +
Preference number: 6 (lower is better)
Translates to: PLVESSTLMRLPFTS*PLSCAMAALASASF
Trigger: GAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 90 bp AACAACTGGTTGAGCCCCATAGGAACCAGCCATTGGGGTAGTGGCTaGTGCAGCATAGGCAGCTGGCTGGCTAGCATAGGCAGCAGCTGT +
Preference number: 6 (lower is better)
Translates to: NNWLSPIGTSHWGSG*CSIGSWLASIGSSC
Trigger: ACAGCTGCTGCCTATGCTAGCCAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS TCA 72 bp ACGCGTCCACGGCGCTCGAAGAGGCTGCGCAATTCCTaGCTTGTACATGCAGCCGATACATTGCCCACGAAA +
Preference number: 6 (lower is better)
Translates to: TRPRRSKRLRNS*LVHAADTLPTK
Trigger: TTTCGTGGGCAATGTATCGGCTGCATGTACAAGTCAGGAATTGCGCAGCCTCTTCGAGCGCCGTGGACGCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS GCA 72 bp TTGATGCGCTTGCCCTTCACTTCTTTGCCGTTGAGCTaGGCGATGGCGGCTTTGGCATCTGCTTCCTTCTCC +
Preference number: 6 (lower is better)
Translates to: LMRLPFTSLPLS*AMAALASASFS
Trigger: GGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 72 bp CTGAACAACTGGTTGAGCCCCATAGGAACCAGCCATTaGGGTAGTGGCTTGTGCAGCATAGGCAGCTGGCTG +
Preference number: 6 (lower is better)
Translates to: LNNWLSPIGTSH*GSGLCSIGSWL
Trigger: CAGCCAGCTGCCTATGCTGCACAAGCCACTACCCCAATGGCTGGTTCCTATGGGGCTCAACCAGTTGTTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 72 bp GAGAGTTCCACGTTGATGCGCTTGCCCTTCACTTCTTaGCCGTTGAGCTGCGCGATGGCGGCTTTGGCATCT +
Preference number: 6 (lower is better)
Translates to: ESSTLMRLPFTS*PLSCAMAALAS
Trigger: AGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 72 bp GGCCCCTTCTTCTGCCCCTTGGTTGAGAGTTCCACGTaGATGCGCTTGCCCTTCACTTCTTTGCCGTTGAGC +
Preference number: 6 (lower is better)
Translates to: GPFFCPLVESST*MRLPFTSLPLS
Trigger: GCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAAGAAGGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS TCA 72 bp GAACAAACGCGTAGTCTTTTACCACGTCACACTCGATaGCGCGTCCACGGCGCTCGAAGAGGCTGCGCAATT +
Preference number: 6 (lower is better)
Translates to: EQTRSLLPRHTR*RVHGARRGCAI
Trigger: AATTGCGCAGCCTCTTCGAGCGCCGTGGACGCGTCATCGAGTGTGACGTGGTAAAAGACTACGCGTTTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CCA 72 bp CAGTGCTGTTGCCAAAAGCCTGCTGGTAGTCGAAGGTaGCAGAGAAGCCACCAGTTCCAGGGAATGCTGTGT +
Preference number: 6 (lower is better)
Translates to: QCCCQKPAGSRR*QRSHQFQGMLC
Trigger: ACACAGCATTCCCTGGAACTGGTGGCTTCTCTGCCACCTTCGACTACCAGCAGGCTTTTGGCAACAGCACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 72 bp TTCTGCCCCTTGGTTGAGAGTTCCACGTTGATGCGCTaGCCCTTCACTTCTTTGCCGTTGAGCTGCGCGATG +
Preference number: 6 (lower is better)
Translates to: FCPLVESSTLMR*PFTSLPLSCAM
Trigger: CATCGCGCAGCTCAACGGCAAAGAAGTGAAGGGCAAGCGCATCAACGTGGAACTCTCAACCAAGGGGCAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS CAA 72 bp GTCCACGGCGCTCGAAGAGGCTGCGCAATTCCTGACTaGTACATGCAGCCGATACATTGCCCACGAAAATCT +
Preference number: 6 (lower is better)
Translates to: VHGARRGCAIPD*YMQPIHCPRKS
Trigger: AGATTTTCGTGGGCAATGTATCGGCTGCATGTACAAGTCAGGAATTGCGCAGCCTCTTCGAGCGCCGTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS GCA 72 bp TTTGCCGTTGAGCTGCGCGATGGCGGCTTTGGCATCTaGTTCCTTCTCCATGTGAACAAACGCGTAGTCTTT +
Preference number: 6 (lower is better)
Translates to: FAVELRDGGFGI*FLLHVNKRVVF
Trigger: AAAGACTACGCGTTTGTTCACATGGAGAAGGAAGCAGATGCCAAAGCCGCCATCGCGCAGCTCAACGGCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
CDS GCA 72 bp TGCGCAATTCCTGACTTGTACATGCAGCCGATACATTaGCCACGAAAATCTTCCAAGTGTTCAGGGGCCTCG +
Preference number: 6 (lower is better)
Translates to: CAIPDLYMQPIH*PRKSSKCSGAS
Trigger: CGAGGCCCCTGAACACTTGGAAGATTTTCGTGGGCAATGTATCGGCTGCATGTACAAGTCAGGAATTGCGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2
CDS GCA 72 bp GCGCTCGAAGAGGCTGCGCAATTCCTGACTTGTACATaGAGCCGATACATTGCCCACGAAAATCTTCCAAGT +
Preference number: 6 (lower is better)
Translates to: ALEEAAQFLTCT*SRYIAHENLPS
Trigger: ACTTGGAAGATTTTCGTGGGCAATGTATCGGCTGCATGTACAAGTCAGGAATTGCGCAGCCTCTTCGAGCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000006625.8
ENSMUST00000113793.4
ENSMUST00000180008.2