Pregenerated sensors for RBM12B1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046667

Ensembl transcript IDs: ENSMUST00000050069.9, ENSMUST00000069128.8

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CTGCCTACGATCTTTCTCATGACACTGCCTAAAATCATCTTCCTGTaGCCATTTCCAATCCTCCAGAGGCAGTCTCCAGTCTTCCTCCCT	+
Preference number: 5 (lower is better) Translates to: LPTIFLMTLPKIIFL*PFPILQRQSPVFLP Trigger: AGGGAGGAAGACTGGAGACTGCCTCTGGAGGATTGGAAATGGTCACAGGAAGATGATTTTAGGCAGTGTCATGAGAAAGATCGTAGGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8
CDS GCA 90 bp	TGTGTCCTCTCATTAGACAACCAGGAAGACTTTACACCAAACTCCTaGATTTGTTCCTCAGATATAAGTCTTAACAACACCTCTATCCCC	+
Preference number: 5 (lower is better) Translates to: CVLSLDNQEDFTPNS*ICSSDISLNNTSIP Trigger: GGGGATAGAGGTGTTGTTAAGACTTATATCTGAGGAACAAATGCAGGAGTTTGGTGTAAAGTCTTCCTGGTTGTCTAATGAGAGGACACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8
CDS CCA 90 bp	GCAAACCTCGTAGAAATAAGTAAGGATTCTCAGCCTTCAATGGCCTaGTCTTTCTTGGCCTTAAGTCAAGTCCTGTACCATTTGTATGAA	+
Preference number: 5 (lower is better) Translates to: ANLVEISKDSQPSMA*SFLALSQVLYHLYE Trigger: TTCATACAAATGGTACAGGACTTGACTTAAGGCCAAGAAAGACCAGGCCATTGAAGGCTGAGAATCCTTACTTATTTCTACGAGGTTTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8
CDS CCA 90 bp	GAACCCTGCATGACTTCTATAAATCTTGAACCCATGAAACTTCTATaGCATTTAAGACCTCCTGAAGCATCAACACATGAAGCAAATTTT	+
Preference number: 5 (lower is better) Translates to: EPCMTSINLEPMKLL*HLRPPEASTHEANF Trigger: AAAATTTGCTTCATGTGTTGATGCTTCAGGAGGTCTTAAATGCCATAGAAGTTTCATGGGTTCAAGATTTATAGAAGTCATGCAGGGTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8
CDS CCA 72 bp	ATCTTCCTCTCGGGAACGCCTGAAATGTTCTTCGGGTaGCTGTCTAATGTGCTCCTGATAGGATCTCCTGAA	+
Preference number: 6 (lower is better) Translates to: IFLSGTPEMFFG*LSNVLLIGSPE Trigger: TTCAGGAGATCCTATCAGGAGCACATTAGACAGCCACCCGAAGAACATTTCAGGCGTTCCCGAGAGGAAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8
CDS CAA 72 bp	CTTCAGATCTCATACGAGGAGTGTCACCGCCCTCGGTaGCAGTACCACCAAATTCAATCCACTGTTGTTCTG	+
Preference number: 6 (lower is better) Translates to: LQISYEECHRPR*QYHQIQSTVVL Trigger: CAGAACAACAGTGGATTGAATTTGGTGGTACTGCAACCGAGGGCGGTGACACTCCTCGTATGAGATCTGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8
CDS CAA 72 bp	CCTAAAGTCCTCATCAGTGGGATATCTCAAATCTTCTaGGGAGGTCCGGAAGTCCTCATCAGAAGCTTGCCT	+
Preference number: 6 (lower is better) Translates to: PKVLISGISQIF*GGPEVLIRSLP Trigger: AGGCAAGCTTCTGATGAGGACTTCCGGACCTCCCAAGAAGATTTGAGATATCCCACTGATGAGGACTTTAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8
CDS TCA 72 bp	ATCTTTCTCATGACACTGCCTAAAATCATCTTCCTGTaGCCATTTCCAATCCTCCAGAGGCAGTCTCCAGTC	+
Preference number: 6 (lower is better) Translates to: IFLMTLPKIIFL*PFPILQRQSPV Trigger: GACTGGAGACTGCCTCTGGAGGATTGGAAATGGTCACAGGAAGATGATTTTAGGCAGTGTCATGAGAAAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8
CDS TCA 72 bp	TCCCAAGGGCTTCTTAGCTGCCTACGATCTTTCTCATaGCACTGCCTAAAATCATCTTCCTGTGACCATTTC	+
Preference number: 6 (lower is better) Translates to: SQGLLSCLRSFS*HCLKSSSCDHF Trigger: GAAATGGTCACAGGAAGATGATTTTAGGCAGTGTCATGAGAAAGATCGTAGGCAGCTAAGAAGCCCTTGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8
CDS CCA 72 bp	AGATCTAAAATTTTTAGGAAGTCGAAGGTCCTTCTCTaGAACTTCCCTGAGGTCTTCCACAGACACCCTCCT	+
Preference number: 6 (lower is better) Translates to: RSKIFRKSKVLL*NFPEVFHRHPP Trigger: AGGAGGGTGTCTGTGGAAGACCTCAGGGAAGTTCCAGAGAAGGACCTTCGACTTCCTAAAAATTTTAGATCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8
CDS CCA 72 bp	GTAGAAATAAGTAAGGATTCTCAGCCTTCAATGGCCTaGTCTTTCTTGGCCTTAAGTCAAGTCCTGTACCAT	+
Preference number: 6 (lower is better) Translates to: VEISKDSQPSMA*SFLALSQVLYH Trigger: ATGGTACAGGACTTGACTTAAGGCCAAGAAAGACCAGGCCATTGAAGGCTGAGAATCCTTACTTATTTCTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8
CDS GCA 72 bp	TCATTAGACAACCAGGAAGACTTTACACCAAACTCCTaGATTTGTTCCTCAGATATAAGTCTTAACAACACC	+
Preference number: 6 (lower is better) Translates to: SLDNQEDFTPNS*ICSSDISLNNT Trigger: GGTGTTGTTAAGACTTATATCTGAGGAACAAATGCAGGAGTTTGGTGTAAAGTCTTCCTGGTTGTCTAATGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8
CDS CCA 72 bp	ATGACTTCTATAAATCTTGAACCCATGAAACTTCTATaGCATTTAAGACCTCCTGAAGCATCAACACATGAA	+
Preference number: 6 (lower is better) Translates to: MTSINLEPMKLL*HLRPPEASTHE Trigger: TTCATGTGTTGATGCTTCAGGAGGTCTTAAATGCCATAGAAGTTTCATGGGTTCAAGATTTATAGAAGTCAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050069.9 ENSMUST00000069128.8

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