RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RBM10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031060

Ensembl transcript IDs: ENSMUST00000064911.7, ENSMUST00000082089.14, ENSMUST00000084383.10, ENSMUST00000115374.8, ENSMUST00000115375.8, ENSMUST00000177738.8

Found 333 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTaGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCA +
Preference number: 1 (lower is better)
Translates to: ISQQKSPTPSLIWLL*LGRRLVDRRAFLRP
Trigger: TGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
3UTR CAA 90 bp TCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTaGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTC +
Preference number: 2 (lower is better)
Translates to: SQQKSPTPSLIWLLW*GRRLVDRRAFLRPF
Trigger: GAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp TGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTCGCCGCCGCCTACGCTaGGTCTCGGAGCCCGGGGAG +
Preference number: 4 (lower is better)
Translates to: WLGRRLVDRRAFLRPFHSRRRLR*VSEPGE
Trigger: CTCCCCGGGCTCCGAGACTCAGCGTAGGCGGCGGCG...ACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATGTGGGACTGTGCCTGTaGCGCCGCCGCCGCCTACGC +
Preference number: 4 (lower is better)
Translates to: SPTPSLIWLLWLGRRLVDVGLCL*RRRRLR
Trigger: GCGTAGGCGGCGGCGGCGGCACAGGCACAGTCCCAC...ATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCAGCCTGGCGGGCCAGTaGGACTGTGCCTGTGCCGCC +
Preference number: 4 (lower is better)
Translates to: PSLIWLLWLGRRLVDRRASLAGQ*DCACAA
Trigger: GGCGGCACAGGCACAGTCCCACTGGCCCGCCAGGCT...GGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGCGCCGCCGCCTACGCTaGGTCTCGGAGCCCGGGGAG +
Preference number: 4 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWRRRLR*VSEPGE
Trigger: CTCCCCGGGCTCCGAGACTCAGCGTAGGCGGCGGCG...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTACCCTGGGAGGCCTGTaGGATTGCCCACTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSTLGGL*DCPLGS
Trigger: GCTGCCCAGTGGGCAATCTCACAGGCCTCCCAGGGT...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCGGAGGGTGCAGGGCCTaGAGGATCTGTAGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: PSLIWLLWLGRRLVDRRAGGCRA*RICSSW
Trigger: CCAGCTGCTACAGATCCTGCAGGCCCTGCACCCTCC...GGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTGATAGTCGCCGTCTCTaGGGAAGCCTGGCGGGCCAG +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSDSRRL*GSLAGQ
Trigger: CTGGCCCGCCAGGCTTCCCCAGAGACGGCGACTATC...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCCAGCTGGGTCCCCTTTaGTCCCAGTCATGCCAGGGC +
Preference number: 4 (lower is better)
Translates to: PSLIWLLWLGRRLVDRRAQLGPL*SQSCQG
Trigger: GCCCTGGCATGACTGGGACCAAAGGGGACCCAGCTG...GGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTGGGACTGGTAGCCGGTaGGAAGGCAGAGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: LIWLLWLGRRLVDRRAFLGTGSR*EGRAAG
Trigger: CCCAGCAGCTCTGCCTTCCCACCGGCTACCAGTCCC...AAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTGCTGATCCAGCCGAGTaGCCAGGGGCAGCTTCTGCT +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSADPAE*PGAASA
Trigger: AGCAGAAGCTGCCCCTGGGCACTCGGCTGGATCAGC...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTGCGGCCCAGACCACTaGCTTCTTTCCAGCCCATGG +
Preference number: 4 (lower is better)
Translates to: PSLIWLLWLGRRLVDRRACGPDH*LLSSPW
Trigger: CCATGGGCTGGAAAGAAGGCAGTGGTCTGGGCCGCA...GGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTGCGGCCCAGACCACTaGCTTCTTTCCAGCCCATGG +
Preference number: 4 (lower is better)
Translates to: WLGRRLVDRRAFLRPFHSCGPDH*LLSSPW
Trigger: CCATGGGCTGGAAAGAAGGCAGTGGTCTGGGCCGCA...ACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTACGGACCTCCCGTGCTTaGACACCATGGGACTGCAGC +
Preference number: 4 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVRTSRA*TPWDCS
Trigger: GCTGCAGTCCCATGGTGTCCAAGCACGGGAGGTCCG...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATCTCCCGCCCACCCAGTaGCAGTGCCTGCTGATCCAG +
Preference number: 4 (lower is better)
Translates to: EEPSLDHSTVHLLCPSMDLPPTQ*QCLLIQ
Trigger: CTGGATCAGCAGGCACTGCCACTGGGTGGGCGGGAG...ATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTACTCCCGCCCACCCAGTaGCAGTGCCTGCTGATCCAG +
Preference number: 4 (lower is better)
Translates to: RPFHSSSSLSLDGYPMSVLPPTQ*QCLLIQ
Trigger: CTGGATCAGCAGGCACTGCCACTGGGTGGGCGGGAG...TACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGCTGTAGTCAACTGGTaGCTCCTCGGGGGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVAVVNW*LLGGSP
Trigger: TGGGCTGCCCCCGAGGAGCCACCAGTTGACTACAGC...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACAGCTGGGTCCCCTTTaGTCCCAGTCATGCCAGGGC +
Preference number: 4 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRQLGPL*SQSCQG
Trigger: GCCCTGGCATGACTGGGACCAAAGGGGACCCAGCTG...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGCCCAGAGAGCTGCTaGTGCCGGATGAGTGCCTCC +
Preference number: 4 (lower is better)
Translates to: SPTPSLIWLLWLGRRLVDSPESC*CRMSAS
Trigger: GGAGGCACTCATCCGGCACCAGCAGCTCTCTGGGCT...ATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAAGCCCAGAGAGCTGCTaGTGCCGGATGAGTGCCTCC +
Preference number: 4 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVSPESC*CRMSAS
Trigger: GGAGGCACTCATCCGGCACCAGCAGCTCTCTGGGCT...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGACCCTGGGAGGCCTGTaGGATTGCCCACTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWTLGGL*DCPLGS
Trigger: GCTGCCCAGTGGGCAATCTCACAGGCCTCCCAGGGT...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAGCTGATCCAGCCGAGTaGCCAGGGGCAGCTTCTGCT +
Preference number: 4 (lower is better)
Translates to: PFHSSSSLSLDGYPMSVEADPAE*PGAASA
Trigger: AGCAGAAGCTGCCCCTGGGCACTCGGCTGGATCAGC...TTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATGGAGGGTGCAGGGCCTaGAGGATCTGTAGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: EEPSLDHSTVHLLCPSMDGGCRA*RICSSW
Trigger: CCAGCTGCTACAGATCCTGCAGGCCCTGCACCCTCC...ATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTCCAGAGAGCTGCTGGTaGCGGATGAGTGCCTCCTTG +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSPESCW*RMSASL
Trigger: CAAGGAGGCACTCATCCGGCACCAGCAGCTCTCTGG...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAATGGAGCCCAGAGAGCTaGTGGTGCCGGATGAGTGCC +
Preference number: 4 (lower is better)
Translates to: PFHSSSSLSLDGYPMSVEWSPES*WCRMSA
Trigger: GGCACTCATCCGGCACCAGCAGCTCTCTGGGCTCCA...TTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATAGTCGCCGTCTCTaGGGAAGCCTGGCGGGCCAG +
Preference number: 4 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMDSRRL*GSLAGQ
Trigger: CTGGCCCGCCAGGCTTCCCCAGAGACGGCGACTATC...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCCTCAGTGGCTGCCTGTaGCAGCATCCTCAGCATGAC +
Preference number: 4 (lower is better)
Translates to: PSLIWLLWLGRRLVDRRALSGCL*QHPQHD
Trigger: GTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAG...GGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATCGTGCTTGGACACCATaGGACTGCAGCTGTCCACGG +
Preference number: 4 (lower is better)
Translates to: SPTPSLIWLLWLGRRLVDRAWTP*DCSCPR
Trigger: CCGTGGACAGCTGCAGTCCCATGGTGTCCAAGCACG...ATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAACGGACCTCCCGTGCTTaGACACCATGGGACTGCAGC +
Preference number: 4 (lower is better)
Translates to: PFHSSSSLSLDGYPMSVERTSRA*TPWDCS
Trigger: GCTGCAGTCCCATGGTGTCCAAGCACGGGAGGTCCG...TTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGCTCCCGCCCACCCAGTaGCAGTGCCTGCTGATCCAG +
Preference number: 4 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMLPPTQ*QCLLIQ
Trigger: CTGGATCAGCAGGCACTGCCACTGGGTGGGCGGGAG...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATGCACTCTCTCCACCCTaGGAGGCCTGTGAGATTGCC +
Preference number: 4 (lower is better)
Translates to: SPTPSLIWLLWLGRRLVDALSPP*EACEIA
Trigger: GGCAATCTCACAGGCCTCCCAGGGTGGAGAGAGTGC...ATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGAGCACTCTCTCCACCCTaGGAGGCCTGTGAGATTGCC +
Preference number: 4 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRALSPP*EACEIA
Trigger: GGCAATCTCACAGGCCTCCCAGGGTGGAGAGAGTGC...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGCTGTAGTCAACTGGTaGCTCCTCGGGGGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSAVVNW*LLGGSP
Trigger: TGGGCTGCCCCCGAGGAGCCACCAGTTGACTACAGC...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATGTAGCTGTAGTCAACTaGTGGCTCCTCGGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: SPTPSLIWLLWLGRRLVDVAVVN*WLLGGS
Trigger: GCTGCCCCCGAGGAGCCACCAGTTGACTACAGCTAC...ATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGAGTAGCTGTAGTCAACTaGTGGCTCCTCGGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRVAVVN*WLLGGS
Trigger: GCTGCCCCCGAGGAGCCACCAGTTGACTACAGCTAC...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTAGGACCTGTTCCAGCTaGGTCCCCTTTGGTCCCAGT +
Preference number: 4 (lower is better)
Translates to: WLGRRLVDRRAFLRPFHSRTCSS*VPFGPS
Trigger: ACTGGGACCAAAGGGGACCCAGCTGGAACAGGTCCT...ACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGGGGGCAGCACCAGGCTaGGCTCGAGAGAAAGCCTGC +
Preference number: 4 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWGAAPG*AREKAC
Trigger: GCAGGCTTTCTCTCGAGCCCAGCCTGGTGCTGCCCC...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTGGGGCAGCACCAGGCTaGGCTCGAGAGAAAGCCTGC +
Preference number: 4 (lower is better)
Translates to: RRLVDRRAFLRPFHSSSSGAAPG*AREKAC
Trigger: GCAGGCTTTCTCTCGAGCCCAGCCTGGTGCTGCCCC...AGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTTGGTAGCAGTGCTCTaGCCACTGCTCCCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: WLGRRLVDRRAFLRPFHSLVAVL*PLLPSA
Trigger: AGCTGAGGGGAGCAGTGGCCAGAGCACTGCTACCAA...ACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTGGGACTGGTAGCCGGTaGGAAGGCAGAGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETGTGSR*EGRAAG
Trigger: CCCAGCAGCTCTGCCTTCCCACCGGCTACCAGTCCC...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTGGGACTGGTAGCCGGTaGGAAGGCAGAGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: RRLVDRRAFLRPFHSSSSGTGSR*EGRAAG
Trigger: CCCAGCAGCTCTGCCTTCCCACCGGCTACCAGTCCC...AGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTCATAGGAACTGCCCCTaGCACCCAGGCCAGAACCTC +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSHRNCP*HPGQNL
Trigger: GAGGTTCTGGCCTGGGTGCCAGGGGCAGTTCCTATG...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp CCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTGGGCACACCACATTTaGAGCACTTCTCTCGGCGCT +
Preference number: 4 (lower is better)
Translates to: PSLIWLLWLGRRLVDRRAWAHHI*STSLGA
Trigger: AGCGCCGAGAGAAGTGCTTCAAATGTGGTGTGCCCA...GGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp TCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATTGGTGGAGAGCTGGATaGAGGCGAAGCCTCGGTTCA +
Preference number: 4 (lower is better)
Translates to: SPTPSLIWLLWLGRRLVDWWRAG*RRSLGS
Trigger: TGAACCGAGGCTTCGCCTTCATCCAGCTCTCCACCA...ATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp CTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTTGGTGGAGAGCTGGATaGAGGCGAAGCCTCGGTTCA +
Preference number: 4 (lower is better)
Translates to: LIWLLWLGRRLVDRRAFLWWRAG*RRSLGS
Trigger: TGAACCGAGGCTTCGCCTTCATCCAGCTCTCCACCA...AAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTTCTTGCCATCGATGGTaGGCGGAGGGTGCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: RRLVDRRAFLRPFHSSSSSCHRW*AEGAGP
Trigger: AGGCCCTGCACCCTCCGCTCACCATCGATGGCAAGA...AGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCTTGCCATCGATGGTaGGCGGAGGGTGCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLSCHRW*AEGAGP
Trigger: AGGCCCTGCACCCTCCGCTCACCATCGATGGCAAGA...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp TGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTAGAGAAAGCCTGCAGTaGCACAGAGTCTGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: WLGRRLVDRRAFLRPFHSRESLQ*HRVCSS
Trigger: GCTGGAGCAGACTCTGTGTCACTGCAGGCTTTCTCT...ACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAACTGCTCCCCTCAGCTaGTTGCTGATAGAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVTAPLS*LLIEPR
Trigger: CCTGGGCTCTATCAGCAATCAGCTGAGGGGAGCAGT...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGCTGATCCAGCCGAGTaGCCAGGGGCAGCTTCTGCT +
Preference number: 4 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMADPAE*PGAASA
Trigger: AGCAGAAGCTGCCCCTGGGCACTCGGCTGGATCAGC...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGTGGAGCCCAGAGAGCTaGTGGTGCCGGATGAGTGCC +
Preference number: 4 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMWSPES*WCRMSA
Trigger: GGCACTCATCCGGCACCAGCAGCTCTCTGGGCTCCA...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTTGGAGCCCAGAGAGCTaGTGGTGCCGGATGAGTGCC +
Preference number: 4 (lower is better)
Translates to: RRLVDRRAFLRPFHSSSSWSPES*WCRMSA
Trigger: GGCACTCATCCGGCACCAGCAGCTCTCTGGGCTCCA...AGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTACCTGTGAACGATCAGTaGCTCCATAGCGGCCAGTCC +
Preference number: 4 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVPVNDQ*LHSGQS
Trigger: GGACTGGCCGCTATGGAGCCACTGATCGTTCACAGG...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGCCTGGCGGGCCAGTaGGACTGTGCCTGTGCCGCC +
Preference number: 4 (lower is better)
Translates to: LQKEHDLSPISQQKSPTPSLAGQ*DCACAA
Trigger: GGCGGCACAGGCACAGTCCCACTGGCCCGCCAGGCT...TGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGAGGATGTCATCCTCAGTaGCTGCCTGTGGCAGCATCC +
Preference number: 4 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRGCHPQ*LPVAAS
Trigger: GGATGCTGCCACAGGCAGCCACTGAGGATGACATCC...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTCGTGCTTGGACACCATaGGACTGCAGCTGTCCACGG +
Preference number: 4 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSRAWTP*DCSCPR
Trigger: CCGTGGACAGCTGCAGTCCCATGGTGTCCAAGCACG...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTCGGACCTCCCGTGCTTaGACACCATGGGACTGCAGC +
Preference number: 4 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETRTSRA*TPWDCS
Trigger: GCTGCAGTCCCATGGTGTCCAAGCACGGGAGGTCCG...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATGCACTCTCTCCACCCTaGGAGGCCTGTGAGATTGCC +
Preference number: 4 (lower is better)
Translates to: EEPSLDHSTVHLLCPSMDALSPP*EACEIA
Trigger: GGCAATCTCACAGGCCTCCCAGGGTGGAGAGAGTGC...ATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGCTGTAGTCAACTGGTaGCTCCTCGGGGGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMAVVNW*LLGGSP
Trigger: TGGGCTGCCCCCGAGGAGCCACCAGTTGACTACAGC...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGCAGCTGGGTCCCCTTTaGTCCCAGTCATGCCAGGGC +
Preference number: 4 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMQLGPL*SQSCQG
Trigger: GCCCTGGCATGACTGGGACCAAAGGGGACCCAGCTG...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGGGGCAGCACCAGGCTaGGCTCGAGAGAAAGCCTGC +
Preference number: 4 (lower is better)
Translates to: NFPAKVTNSKSNLASLVGGAAPG*AREKAC
Trigger: GCAGGCTTTCTCTCGAGCCCAGCCTGGTGCTGCCCC...CCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATT
53% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTTTGGTAGCAGTGCTCTaGCCACTGCTCCCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: LIWLLWLGRRLVDRRAFLLVAVL*PLLPSA
Trigger: AGCTGAGGGGAGCAGTGGCCAGAGCACTGCTACCAA...AAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTATGGGCACACCACATTTaGAGCACTTCTCTCGGCGCT +
Preference number: 4 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVWAHHI*STSLGA
Trigger: AGCGCCGAGAGAAGTGCTTCAAATGTGGTGTGCCCA...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGCTGCTGGTGCCGGATaGGTGCCTCCTTGCTGGGAA +
Preference number: 4 (lower is better)
Translates to: NFPAKVTNSKSNLASLVGAAGAG*VPPCWE
Trigger: TTCCCAGCAAGGAGGCACTCATCCGGCACCAGCAGC...CCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp CCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGCTGCTGGTGCCGGATaGGTGCCTCCTTGCTGGGAA +
Preference number: 4 (lower is better)
Translates to: PISQQKSPTPSLIWLLWLAAGAG*VPPCWE
Trigger: TTCCCAGCAAGGAGGCACTCATCCGGCACCAGCAGC...CAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTCATCCTCAGTGGCTaGCTGTGGCAGCATCCTCAG +
Preference number: 4 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSVILSG*LWQHPQ
Trigger: CTGAGGATGCTGCCACAGGCAGCCACTGAGGATGAC...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATTGGACACCATGGGACTaGAGCTGTCCACGGATGTCA +
Preference number: 4 (lower is better)
Translates to: SPTPSLIWLLWLGRRLVDWTPWD*SCPRMS
Trigger: TGACATCCGTGGACAGCTGCAGTCCCATGGTGTCCA...ATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTCTTTGGTCCCAGTCATaGCAGGGCCCTTGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: LIWLLWLGRRLVDRRAFLLWSQS*QGPCCS
Trigger: AGAACAGCAAGGGCCCTGGCATGACTGGGACCAAAG...AAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTCAATGCCCTGTTTCTTaGGGCCCAGACCACTGCCTT +
Preference number: 4 (lower is better)
Translates to: LIWLLWLGRRLVDRRAFLQCPVS*GPDHCL
Trigger: AAGGCAGTGGTCTGGGCCGCAAGAAACAGGGCATTG...AAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGGATGTCATCCTCAGTaGCTGCCTGTGGCAGCATCC +
Preference number: 4 (lower is better)
Translates to: TPSLIWLLWLGRRLVDRRGCHPQ*LPVAAS
Trigger: GGATGCTGCCACAGGCAGCCACTGAGGATGACATCC...TCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATTTGGTAGCAGTGCTCTaGCCACTGCTCCCCTCAGCT +
Preference number: 4 (lower is better)
Translates to: EEPSLDHSTVHLLCPSMDLVAVL*PLLPSA
Trigger: AGCTGAGGGGAGCAGTGGCCAGAGCACTGCTACCAA...ATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTAGCCTGCATCTGCAGTaGCCGATTCCCGCCTTTCAT +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSSLHLQ*PIPAFH
Trigger: ATGAAAGGCGGGAATCGGCCACTGCAGATGCAGGCT...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGATTCCAGCCCATGGCCTaGAGCATTCGACTGCCAATG +
Preference number: 4 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRFQPMA*SIRLPM
Trigger: CATTGGCAGTCGAATGCTCCAGGCCATGGGCTGGAA...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTCTTCTTTCCAGCCCATaGCCTGGAGCATTCGACTGC +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSLLSSP*PGAFDC
Trigger: GCAGTCGAATGCTCCAGGCCATGGGCTGGAAAGAAG...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTCTTCTTTCCAGCCCATaGCCTGGAGCATTCGACTGC +
Preference number: 4 (lower is better)
Translates to: LIWLLWLGRRLVDRRAFLLLSSP*PGAFDC
Trigger: GCAGTCGAATGCTCCAGGCCATGGGCTGGAAAGAAG...AAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGCATAGGAACTGCCCCTaGCACCCAGGCCAGAACCTC +
Preference number: 4 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMHRNCP*HPGQNL
Trigger: GAGGTTCTGGCCTGGGTGCCAGGGGCAGTTCCTATG...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp GAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATGTAGCGTCCTGCAAGTaGCTAAACTCGACGAAGGCG +
Preference number: 4 (lower is better)
Translates to: EEPSLDHSTVHLLCPSMDVASCK*LNSTKA
Trigger: CGCCTTCGTCGAGTTTAGTCACTTGCAGGACGCTAC...ATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGTGGTGGAGAGCTGGATaGAGGCGAAGCCTCGGTTCA +
Preference number: 4 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMWWRAG*RRSLGS
Trigger: TGAACCGAGGCTTCGCCTTCATCCAGCTCTCCACCA...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp CCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAAGAGAAAGCCTGCAGTaGCACAGAGTCTGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: PFHSSSSLSLDGYPMSVERESLQ*HRVCSS
Trigger: GCTGGAGCAGACTCTGTGTCACTGCAGGCTTTCTCT...TTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGACTGCTCCCCTCAGCTaGTTGCTGATAGAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLTAPLS*LLIEPR
Trigger: CCTGGGCTCTATCAGCAATCAGCTGAGGGGAGCAGT...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp TGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTAAGTGGGCTCGCCGATaGATCTCAAGGTTTTGCTTG +
Preference number: 4 (lower is better)
Translates to: WLGRRLVDRRAFLRPFHSKWARR*ISRFCL
Trigger: CAAGCAAAACCTTGAGATTCATCGGCGAGCCCACTT...ACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAGCTTGCCCTCCTGACTaGCATACTCTCGTGGGTATG +
Preference number: 4 (lower is better)
Translates to: PFHSSSSLSLDGYPMSVEACPPD*HTLVGM
Trigger: CATACCCACGAGAGTATGGCAGTCAGGAGGGCAAGC...TTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGCTTGCCCTCCTGACTaGCATACTCTCGTGGGTATG +
Preference number: 4 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSACPPD*HTLVGM
Trigger: CATACCCACGAGAGTATGGCAGTCAGGAGGGCAAGC...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTGGAGGGTGCAGGGCCTaGAGGATCTGTAGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: DLSPISQQKSPTPSLIWLGGCRA*RICSSW
Trigger: CCAGCTGCTACAGATCCTGCAGGCCCTGCACCCTCC...AAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATTCATGCCAGGGCCCTTaGTGTTCTTCAGGTAGCCAT +
Preference number: 4 (lower is better)
Translates to: SPTPSLIWLLWLGRRLVDSCQGP*CSSGSH
Trigger: ATGGCTACCTGAAGAACAGCAAGGGCCCTGGCATGA...ATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAACTTTGGTCCCAGTCATaGCAGGGCCCTTGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: PFHSSSSLSLDGYPMSVELWSQS*QGPCCS
Trigger: AGAACAGCAAGGGCCCTGGCATGACTGGGACCAAAG...TTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATCTTTGGTCCCAGTCATaGCAGGGCCCTTGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: EEPSLDHSTVHLLCPSMDLWSQS*QGPCCS
Trigger: AGAACAGCAAGGGCCCTGGCATGACTGGGACCAAAG...ATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTACTTATTGAGACTGCGTaGCCACCGCTCCATGTCCTT +
Preference number: 4 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVLIETA*PPLHVL
Trigger: AAGGACATGGAGCGGTGGGCACGCAGTCTCAATAAG...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGAAAGGATGGCATAGCCTaGATCTGCAGTGGCCGATTC +
Preference number: 4 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRKDGIA*ICSGRF
Trigger: GAATCGGCCACTGCAGATGCAGGCTATGCCATCCTT...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGCTGGTGCCGGATGAGTaGCTCCTTGCTGGGAAACTG +
Preference number: 4 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLLVPDE*LLAGKL
Trigger: CAGTTTCCCAGCAAGGAGGCACTCATCCGGCACCAG...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGCCAGAGAGCTGCTGGTaGCGGATGAGTGCCTCCTTG +
Preference number: 4 (lower is better)
Translates to: PISQQKSPTPSLIWLLWLPESCW*RMSASL
Trigger: CAAGGAGGCACTCATCCGGCACCAGCAGCTCTCTGG...CAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTCTCCCTGCGTTCAGCTaGACGGTCTCGATACTTCAT +
Preference number: 4 (lower is better)
Translates to: LIWLLWLGRRLVDRRAFLLPAFS*TVSILH
Trigger: ATGAAGTATCGAGACCGTGCAGCTGAACGCAGGGAG...AAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTCAATGGGTGTCACAATaGCCTGTTTCTTGCGGCCCA +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSQWVSQ*PVSCGP
Trigger: TGGGCCGCAAGAAACAGGGCATTGTGACACCCATTG...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTCCTGTGAACGATCAGTaGCTCCATAGCGGCCAGTCC +
Preference number: 4 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETPVNDQ*LHSGQS
Trigger: GGACTGGCCGCTATGGAGCCACTGATCGTTCACAGG...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTCTCAGTGGCTGCCTGTaGCAGCATCCTCAGCATGAC +
Preference number: 4 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETLSGCL*QHPQHD
Trigger: GTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAG...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTGGTCGCTGTAATGCATaGATACCTTCTGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSGRCNA*IPSGPG
Trigger: TCCTGGGCCAGAAGGTATCCATGCATTACAGCGACC...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTAGGATCTGTAGCAGCTaGGCTGCTTCCACGATGGTG +
Preference number: 4 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSRICSS*AASTMV
Trigger: CACCATCGTGGAAGCAGCCCAGCTGCTACAGATCCT...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
CDS-3UTR CCA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAATCACTGGCCAGCTTTaGGAGATCCATGCTGGTGTG +
Preference number: 4 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVITGQL*EIHAGV
Trigger: CACACCAGCATGGATCTCCCAAAGCTGGCCAGTGAT...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTCCGTTTGGGCTCTGGTaGCTCAGGGATACCATACTT +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSPFGLW*LRDTIL
Trigger: AAGTATGGTATCCCTGAGCCACCAGAGCCCAAACGG...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTATTCCAGCCCATGGCCTaGAGCATTCGACTGCCAATG +
Preference number: 4 (lower is better)
Translates to: RPFHSSSSLSLDGYPMSVFQPMA*SIRLPM
Trigger: CATTGGCAGTCGAATGCTCCAGGCCATGGGCTGGAA...TACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTACTTCTTTCCAGCCCATaGCCTGGAGCATTCGACTGC +
Preference number: 4 (lower is better)
Translates to: RPFHSSSSLSLDGYPMSVLLSSP*PGAFDC
Trigger: GCAGTCGAATGCTCCAGGCCATGGGCTGGAAAGAAG...TACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGTCTGGCCCAGGATGTTaGGGGAGTGCTGATTGGCTT +
Preference number: 4 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMSGPGC*GSADWL
Trigger: AAGCCAATCAGCACTCCCTCAACATCCTGGGCCAGA...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCTGGCCCAGGATGTTaGGGGAGTGCTGATTGGCTT +
Preference number: 4 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLSGPGC*GSADWL
Trigger: AAGCCAATCAGCACTCCCTCAACATCCTGGGCCAGA...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTAGAGAAAGCCTGCAGTaGCACAGAGTCTGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: RRLVDRRAFLRPFHSSSSRESLQ*HRVCSS
Trigger: GCTGGAGCAGACTCTGTGTCACTGCAGGCTTTCTCT...AGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp TTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAGCTGCTGGTGCCGGATaGGTGCCTCCTTGCTGGGAA +
Preference number: 4 (lower is better)
Translates to: LQKEHDLSPISQQKSPTPAAGAG*VPPCWE
Trigger: TTCCCAGCAAGGAGGCACTCATCCGGCACCAGCAGC...TGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGAAAGTGGGCTCGCCGATaGATCTCAAGGTTTTGCTTG +
Preference number: 4 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRKWARR*ISRFCL
Trigger: CAAGCAAAACCTTGAGATTCATCGGCGAGCCCACTT...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACGTCATACTCATGCTTaGCCTCCTGACTGCCATACT +
Preference number: 4 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRRHTHA*PPDCHT
Trigger: AGTATGGCAGTCAGGAGGGCAAGCATGAGTATGACG...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTACTTATTGAGACTGCGTaGCCACCGCTCCATGTCCTT +
Preference number: 4 (lower is better)
Translates to: RPFHSSSSLSLDGYPMSVLIETA*PPLHVL
Trigger: AAGGACATGGAGCGGTGGGCACGCAGTCTCAATAAG...TACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAAGATCCATGCTGGTGTaGTGTCTTTCAGCTAGCGCT +
Preference number: 4 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVRSMLV*CLSASA
Trigger: AGCGCTAGCTGAAAGACAGCACACCAGCATGGATCT...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTGCTTTGGGAGATCCATaGTGGTGTGCTGTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSALGDP*WCAVFQ
Trigger: CTGAAAGACAGCACACCAGCATGGATCTCCCAAAGC...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGCTGGTGCCGGATGAGTaGCTCCTTGCTGGGAAACTG +
Preference number: 4 (lower is better)
Translates to: PISQQKSPTPSLIWLLWLLVPDE*LLAGKL
Trigger: CAGTTTCCCAGCAAGGAGGCACTCATCCGGCACCAG...CAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGACTCCCTGCGTTCAGCTaGACGGTCTCGATACTTCAT +
Preference number: 4 (lower is better)
Translates to: TPSLIWLLWLGRRLVDRRLPAFS*TVSILH
Trigger: ATGAAGTATCGAGACCGTGCAGCTGAACGCAGGGAG...TCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGATGCCAATGTTGTCACTaGCTAATCCATCCCGAGTGG +
Preference number: 4 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRCQCCH*LIHPEW
Trigger: CCACTCGGGATGGATTAGGCAGTGACAACATTGGCA...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCTGGAGCATTCGACTaGCAATGTTGTCACTGCCTA +
Preference number: 4 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRPGAFD*QCCHCL
Trigger: TAGGCAGTGACAACATTGGCAGTCGAATGCTCCAGG...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATCAATGGGTGTCACAATaGCCTGTTTCTTGCGGCCCA +
Preference number: 4 (lower is better)
Translates to: EEPSLDHSTVHLLCPSMDQWVSQ*PVSCGP
Trigger: TGGGCCGCAAGAAACAGGGCATTGTGACACCCATTG...ATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTTGGACACCATGGGACTaGAGCTGTCCACGGATCTCT +
Preference number: 4 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETWTPWD*SCPRIS
Trigger: AGAGATCCGTGGACAGCTGCAGTCCCATGGTGTCCA...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084383.10
CDS-3UTR CCA 90 bp AATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGCCTGTGAACGATCAGTaGCTCCATAGCGGCCAGTCC +
Preference number: 4 (lower is better)
Translates to: NFPAKVTNSKSNLASLVGPVNDQ*LHSGQS
Trigger: GGACTGGCCGCTATGGAGCCACTGATCGTTCACAGG...CCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCGTGCTTGGACACCATaGGACTGCAGCTGTCCACGG +
Preference number: 4 (lower is better)
Translates to: DLSPISQQKSPTPSLIWLRAWTP*DCSCPR
Trigger: CCGTGGACAGCTGCAGTCCCATGGTGTCCAAGCACG...AAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATGGTCGCTGTAATGCATaGATACCTTCTGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: EEPSLDHSTVHLLCPSMDGRCNA*IPSGPG
Trigger: TCCTGGGCCAGAAGGTATCCATGCATTACAGCGACC...ATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAATCACTGGCCAGCTTTaGGAGATCCATGCTGGTGTG +
Preference number: 4 (lower is better)
Translates to: RPFHSSSSLSLDGYPMSVITGQL*EIHAGV
Trigger: CACACCAGCATGGATCTCCCAAAGCTGGCCAGTGAT...TACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTTCAAGGTTTTGCTTGTaGAGCCCAGAGAGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSSRFCL*SPESCW
Trigger: CCAGCAGCTCTCTGGGCTCCACAAGCAAAACCTTGA...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTACCGTTTGGGCTCTGGTaGCTCAGGGATACCATACTT +
Preference number: 4 (lower is better)
Translates to: RPFHSSSSLSLDGYPMSVPFGLW*LRDTIL
Trigger: AAGTATGGTATCCCTGAGCCACCAGAGCCCAAACGG...TACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTCCAGCCCATGGCCTaGAGCATTCGACTGCCAATG +
Preference number: 4 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWFQPMA*SIRLPM
Trigger: CATTGGCAGTCGAATGCTCCAGGCCATGGGCTGGAA...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTATCCACTATCATCCTGTaGACGATCAGTGGCTCCATA +
Preference number: 4 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVSTIIL*TISGSI
Trigger: TATGGAGCCACTGATCGTTCACAGGATGATAGTGGA...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp CCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGTGGGCACACCACATTTaGAGCACTTCTCTCGGCGCT +
Preference number: 4 (lower is better)
Translates to: PISQQKSPTPSLIWLLWLWAHHI*STSLGA
Trigger: AGCGCCGAGAGAAGTGCTTCAAATGTGGTGTGCCCA...CAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp CCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAACTTCTGCTCTGCCTCTaGTTTGGGCACACCACATTT +
Preference number: 4 (lower is better)
Translates to: PFHSSSSLSLDGYPMSVELLLCL*FGHTTF
Trigger: AAATGTGGTGTGCCCAAATCAGAGGCAGAGCAGAAG...TTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTCTTCTGCTCTGCCTCTaGTTTGGGCACACCACATTT +
Preference number: 4 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSLLLCL*FGHTTF
Trigger: AAATGTGGTGTGCCCAAATCAGAGGCAGAGCAGAAG...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTAAGCCTCGGTTCAGCTaGGTCTGTTTGTCCTTGATA +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSKPRFS*VCLSLI
Trigger: TATCAAGGACAAACAGACTCAGCTGAACCGAGGCTT...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp GATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTACTGCTCCCCTCAGCTaGTTGCTGATAGAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: DLSPISQQKSPTPSLIWLTAPLS*LLIEPR
Trigger: CCTGGGCTCTATCAGCAATCAGCTGAGGGGAGCAGT...AAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGGCTTCTGCCAGTCTGTaGGCTTTTCTTCCCGTTCAG +
Preference number: 4 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWASASL*AFLPVQ
Trigger: CTGAACGGGAAGAAAAGCTCACAGACTGGCAGAAGC...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGGCTTCTGCCAGTCTGTaGGCTTTTCTTCCCGTTCAG +
Preference number: 4 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLASASL*AFLPVQ
Trigger: CTGAACGGGAAGAAAAGCTCACAGACTGGCAGAAGC...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTAATCATGGTCCCGGCTaGGGTTCTCTCCACTATCAT +
Preference number: 4 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSNHGPG*GSLHYH
Trigger: ATGATAGTGGAGAGAACCGCAGCCGGGACCATGATT...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATAATCATGGTCCCGGCTaGGGTTCTCTCCACTATCAT +
Preference number: 4 (lower is better)
Translates to: EEPSLDHSTVHLLCPSMDNHGPG*GSLHYH
Trigger: ATGATAGTGGAGAGAACCGCAGCCGGGACCATGATT...ATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGACGTCATACTCATGCTTaGCCTCCTGACTGCCATACT +
Preference number: 4 (lower is better)
Translates to: TPSLIWLLWLGRRLVDRRRHTHA*PPDCHT
Trigger: AGTATGGCAGTCAGGAGGGCAAGCATGAGTATGACG...TCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGAATCTGTTCCCTGGCTaGTGCCATAGCCCTCATCCT +
Preference number: 4 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWNLFPG*CHSPHP
Trigger: AGGATGAGGGCTATGGCAGCAGCCAGGGAACAGATT...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTAATCTGTTCCCTGGCTaGTGCCATAGCCCTCATCCT +
Preference number: 4 (lower is better)
Translates to: RRLVDRRAFLRPFHSSSSNLFPG*CHSPHP
Trigger: AGGATGAGGGCTATGGCAGCAGCCAGGGAACAGATT...AGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGAATCTGTTCCCTGGCTaGTGCCATAGCCCTCATCCT +
Preference number: 4 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMNLFPG*CHSPHP
Trigger: AGGATGAGGGCTATGGCAGCAGCCAGGGAACAGATT...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGTCATGCCAGGGCCCTTaGTGTTCTTCAGGTAGCCAT +
Preference number: 4 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMSCQGP*CSSGSH
Trigger: ATGGCTACCTGAAGAACAGCAAGGGCCCTGGCATGA...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGAAGGATGGCATAGCCTaGATCTGCAGTGGCCGATTC +
Preference number: 4 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWKDGIA*ICSGRF
Trigger: GAATCGGCCACTGCAGATGCAGGCTATGCCATCCTT...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAAGATCCATGCTGGTGTaGTGTCTTTCAGCTAGCGCT +
Preference number: 4 (lower is better)
Translates to: TPSLIWLLWLGRRLVDRRRSMLV*CLSASA
Trigger: AGCGCTAGCTGAAAGACAGCACACCAGCATGGATCT...TCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGCTTTGGGAGATCCATaGTGGTGTGCTGTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: RPFHSSSSLSLDGYPMSVALGDP*WCAVFQ
Trigger: CTGAAAGACAGCACACCAGCATGGATCTCCCAAAGC...TACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTAGACAGGCTAGCTTCTaGCAGTCTGTGAGCTTTTCT +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSRQASF*QSVSFS
Trigger: AGAAAAGCTCACAGACTGGCAGAAGCTAGCCTGTCT...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCACCAGAGAGCTGCTGGTaGCGGATGAGTGCCTCCTTG +
Preference number: 4 (lower is better)
Translates to: LQKEHDLSPISQQKSPTPPESCW*RMSASL
Trigger: CAAGGAGGCACTCATCCGGCACCAGCAGCTCTCTGG...TGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGCTCCCTGCGTTCAGCTaGACGGTCTCGATACTTCAT +
Preference number: 4 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLLPAFS*TVSILH
Trigger: ATGAAGTATCGAGACCGTGCAGCTGAACGCAGGGAG...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGTACCATACTTCTCCCTaGGTTCAGCTGCACGGTCTC +
Preference number: 4 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMYHTSP*VQLHGL
Trigger: GAGACCGTGCAGCTGAACGCAGGGAGAAGTATGGTA...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp ACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGATGCCAATGTTGTCACTaGCTAATCCATCCCGAGTGG +
Preference number: 4 (lower is better)
Translates to: TPSLIWLLWLGRRLVDRRCQCCH*LIHPEW
Trigger: CCACTCGGGATGGATTAGGCAGTGACAACATTGGCA...TCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAACCTGGAGCATTCGACTaGCAATGTTGTCACTGCCTA +
Preference number: 4 (lower is better)
Translates to: PFHSSSSLSLDGYPMSVEPGAFD*QCCHCL
Trigger: TAGGCAGTGACAACATTGGCAGTCGAATGCTCCAGG...TTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCAATGGGTGTCACAATaGCCTGTTTCTTGCGGCCCA +
Preference number: 4 (lower is better)
Translates to: RRLVDRRAFLRPFHSSSSQWVSQ*PVSCGP
Trigger: TGGGCCGCAAGAAACAGGGCATTGTGACACCCATTG...AGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTGGTCGCTGTAATGCATaGATACCTTCTGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: RRLVDRRAFLRPFHSSSSGRCNA*IPSGPG
Trigger: TCCTGGGCCAGAAGGTATCCATGCATTACAGCGACC...AGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTGTGAGATTGCCCACTaGGCAGCAGCAATGGCAGTA +
Preference number: 4 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLCEIAH*AAAMAV
Trigger: TACTGCCATTGCTGCTGCCCAGTGGGCAATCTCACA...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTGTGAGATTGCCCACTaGGCAGCAGCAATGGCAGTA +
Preference number: 4 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWCEIAH*AAAMAV
Trigger: TACTGCCATTGCTGCTGCCCAGTGGGCAATCTCACA...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTATGATGGTGTATGACTaGCTGTTGGTAGCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: LIWLLWLGRRLVDRRAFLMMVYD*LLVAVL
Trigger: GAGCACTGCTACCAACAGCCAGTCATACACCATCAT...AAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGAATGATGGTGTATGACTaGCTGTTGGTAGCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRMMVYD*LLVAVL
Trigger: GAGCACTGCTACCAACAGCCAGTCATACACCATCAT...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGAGCCTGCATCTGCAGTaGCCGATTCCCGCCTTTCAT +
Preference number: 4 (lower is better)
Translates to: PISQQKSPTPSLIWLLWLSLHLQ*PIPAFH
Trigger: ATGAAAGGCGGGAATCGGCCACTGCAGATGCAGGCT...CAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTTGGGAGATCCATGCTaGTGTGCTGTCTTTCAGCTA +
Preference number: 4 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSLGDPC*CAVFQL
Trigger: TAGCTGAAAGACAGCACACCAGCATGGATCTCCCAA...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTATCACTGGCCAGCTTTaGGAGATCCATGCTGGTGTG +
Preference number: 4 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETITGQL*EIHAGV
Trigger: CACACCAGCATGGATCTCCCAAAGCTGGCCAGTGAT...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGCCGTTTGGGCTCTGGTaGCTCAGGGATACCATACTT +
Preference number: 4 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWPFGLW*LRDTIL
Trigger: AAGTATGGTATCCCTGAGCCACCAGAGCCCAAACGG...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp ACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGATCCACTATCATCCTGTaGACGATCAGTGGCTCCATA +
Preference number: 4 (lower is better)
Translates to: TPSLIWLLWLGRRLVDRRSTIIL*TISGSI
Trigger: TATGGAGCCACTGATCGTTCACAGGATGATAGTGGA...TCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTCTTCTGCTCTGCCTCTaGTTTGGGCACACCACATTT +
Preference number: 4 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETLLLCL*FGHTTF
Trigger: AAATGTGGTGTGCCCAAATCAGAGGCAGAGCAGAAG...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTTCTTGCCATCGATGGTaGGCGGAGGGTGCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTSCHRW*AEGAGP
Trigger: AGGCCCTGCACCCTCCGCTCACCATCGATGGCAAGA...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGCTTCTGCCAGTCTGTaGGCTTTTCTTCCCGTTCAG +
Preference number: 4 (lower is better)
Translates to: NFPAKVTNSKSNLASLVGASASL*AFLPVQ
Trigger: CTGAACGGGAAGAAAAGCTCACAGACTGGCAGAAGC...CCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTAAGTGGGCTCGCCGATaGATCTCAAGGTTTTGCTTG +
Preference number: 4 (lower is better)
Translates to: RRLVDRRAFLRPFHSSSSKWARR*ISRFCL
Trigger: CAAGCAAAACCTTGAGATTCATCGGCGAGCCCACTT...AGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTTCCAATTCGTTTTCTaGCAAGTGGGCTCGCCGATG +
Preference number: 4 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLFQFVF*QVGSPM
Trigger: CATCGGCGAGCCCACTTGTCAGAAAACGAATTGGAA...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTAATCATGGTCCCGGCTaGGGTTCTCTCCACTATCAT +
Preference number: 4 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETNHGPG*GSLHYH
Trigger: ATGATAGTGGAGAGAACCGCAGCCGGGACCATGATT...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGAAGGATGGCATAGCCTaGATCTGCAGTGGCCGATTC +
Preference number: 4 (lower is better)
Translates to: NFPAKVTNSKSNLASLVGKDGIA*ICSGRF
Trigger: GAATCGGCCACTGCAGATGCAGGCTATGCCATCCTT...CCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGTACCATACTTCTCCCTaGGTTCAGCTGCACGGTCTC +
Preference number: 4 (lower is better)
Translates to: PISQQKSPTPSLIWLLWLYHTSP*VQLHGL
Trigger: GAGACCGTGCAGCTGAACGCAGGGAGAAGTATGGTA...CAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTAGGATCTGTAGCAGCTaGGCTGCTTCCACGATGGTG +
Preference number: 4 (lower is better)
Translates to: DLSPISQQKSPTPSLIWLRICSS*AASTMV
Trigger: CACCATCGTGGAAGCAGCCCAGCTGCTACAGATCCT...AAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
CDS-3UTR CCA 90 bp AGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTATTGGGAGATCCATGCTaGTGTGCTGTCTTTCAGCTA +
Preference number: 4 (lower is better)
Translates to: RPFHSSSSLSLDGYPMSVLGDPC*CAVFQL
Trigger: TAGCTGAAAGACAGCACACCAGCATGGATCTCCCAA...TACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp GAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATTTGGGAGATCCATGCTaGTGTGCTGTCTTTCAGCTA +
Preference number: 4 (lower is better)
Translates to: EEPSLDHSTVHLLCPSMDLGDPC*CAVFQL
Trigger: TAGCTGAAAGACAGCACACCAGCATGGATCTCCCAA...ATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTAGCCCAGAGAGCTGCTaGTGCCGGATGAGTGCCTCC +
Preference number: 4 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTSPESC*CRMSAS
Trigger: GGAGGCACTCATCCGGCACCAGCAGCTCTCTGGGCT...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGCGTCATACTCATGCTTaGCCTCCTGACTGCCATACT +
Preference number: 4 (lower is better)
Translates to: PISQQKSPTPSLIWLLWLRHTHA*PPDCHT
Trigger: AGTATGGCAGTCAGGAGGGCAAGCATGAGTATGACG...CAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGAATCCTCTGCACTTTaGTCTTCAGATGAGTCGTCA +
Preference number: 4 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSESSAL*SSDESS
Trigger: TGACGACTCATCTGAAGAGCAAAGTGCAGAGGATTC...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTTATTGAGACTGCGTaGCCACCGCTCCATGTCCTT +
Preference number: 4 (lower is better)
Translates to: DLSPISQQKSPTPSLIWLLIETA*PPLHVL
Trigger: AAGGACATGGAGCGGTGGGCACGCAGTCTCAATAAG...AAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGCCTGGAGCATTCGACTaGCAATGTTGTCACTGCCTA +
Preference number: 4 (lower is better)
Translates to: NFPAKVTNSKSNLASLVGPGAFD*QCCHCL
Trigger: TAGGCAGTGACAACATTGGCAGTCGAATGCTCCAGG...CCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTTGCGGCCCAGACCACTaGCTTCTTTCCAGCCCATGG +
Preference number: 4 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTCGPDH*LLSSPW
Trigger: CCATGGGCTGGAAAGAAGGCAGTGGTCTGGGCCGCA...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCACAATGCCCTGTTTCTTaGGGCCCAGACCACTGCCTT +
Preference number: 4 (lower is better)
Translates to: LQKEHDLSPISQQKSPTPQCPVS*GPDHCL
Trigger: AAGGCAGTGGTCTGGGCCGCAAGAAACAGGGCATTG...TGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTGTAGCTGTAGTCAACTaGTGGCTCCTCGGGGGCAGC +
Preference number: 4 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTVAVVN*WLLGGS
Trigger: GCTGCCCCCGAGGAGCCACCAGTTGACTACAGCTAC...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTATGATGGTGTATGACTaGCTGTTGGTAGCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETMMVYD*LLVAVL
Trigger: GAGCACTGCTACCAACAGCCAGTCATACACCATCAT...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGCCTGCATCTGCAGTaGCCGATTCCCGCCTTTCAT +
Preference number: 4 (lower is better)
Translates to: LQKEHDLSPISQQKSPTPSLHLQ*PIPAFH
Trigger: ATGAAAGGCGGGAATCGGCCACTGCAGATGCAGGCT...TGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCATAGGAACTGCCCCTaGCACCCAGGCCAGAACCTC +
Preference number: 4 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTHRNCP*HPGQNL
Trigger: GAGGTTCTGGCCTGGGTGCCAGGGGCAGTTCCTATG...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp GATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTTTCCAATTCGTTTTCTaGCAAGTGGGCTCGCCGATG +
Preference number: 4 (lower is better)
Translates to: DLSPISQQKSPTPSLIWLFQFVF*QVGSPM
Trigger: CATCGGCGAGCCCACTTGTCAGAAAACGAATTGGAA...AAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGGAATCCTCTGCACTTTaGTCTTCAGATGAGTCGTCA +
Preference number: 4 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWESSAL*SSDESS
Trigger: TGACGACTCATCTGAAGAGCAAAGTGCAGAGGATTC...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTGTCATCCTCAGTGGCTaGCTGTGGCAGCATCCTCAG +
Preference number: 4 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTVILSG*LWQHPQ
Trigger: CTGAGGATGCTGCCACAGGCAGCCACTGAGGATGAC...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCATCATGCCAGGGCCCTTaGTGTTCTTCAGGTAGCCAT +
Preference number: 4 (lower is better)
Translates to: LQKEHDLSPISQQKSPTPSCQGP*CSSGSH
Trigger: ATGGCTACCTGAAGAACAGCAAGGGCCCTGGCATGA...TGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGAGACAGGCTAGCTTCTaGCAGTCTGTGAGCTTTTCT +
Preference number: 4 (lower is better)
Translates to: NFPAKVTNSKSNLASLVGRQASF*QSVSFS
Trigger: AGAAAAGCTCACAGACTGGCAGAAGCTAGCCTGTCT...CCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCTGGTGCCGGATGAGTaGCTCCTTGCTGGGAAACTG +
Preference number: 4 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTLVPDE*LLAGKL
Trigger: CAGTTTCCCAGCAAGGAGGCACTCATCCGGCACCAG...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTTGCCAATGTTGTCACTaGCTAATCCATCCCGAGTGG +
Preference number: 4 (lower is better)
Translates to: DLSPISQQKSPTPSLIWLCQCCH*LIHPEW
Trigger: CCACTCGGGATGGATTAGGCAGTGACAACATTGGCA...AAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTAGGACCTGTTCCAGCTaGGTCCCCTTTGGTCCCAGT +
Preference number: 4 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTRTCSS*VPFGPS
Trigger: ACTGGGACCAAAGGGGACCCAGCTGGAACAGGTCCT...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp CCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCAGAGCACTAATAGGCTaGAAGCTGTTTTTGAAGTTT +
Preference number: 4 (lower is better)
Translates to: PSLIWLLWLGRRLVDRRARALIG*KLFLKF
Trigger: AAACTTCAAAAACAGCTTCCAGCCTATTAGTGCTCT...GGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTATTGAAGTTTTCTTTTTaGTTATTGAGACTGCGTGCC +
Preference number: 4 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVLKFSF*LLRLRA
Trigger: GGCACGCAGTCTCAATAAGCAAAAAGAAAACTTCAA...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGATCCATGCTGGTGTaGTGTCTTTCAGCTAGCGCT +
Preference number: 4 (lower is better)
Translates to: LQKEHDLSPISQQKSPTPRSMLV*CLSASA
Trigger: AGCGCTAGCTGAAAGACAGCACACCAGCATGGATCT...TGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp GATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTAGACAGGCTAGCTTCTaGCAGTCTGTGAGCTTTTCT +
Preference number: 4 (lower is better)
Translates to: DLSPISQQKSPTPSLIWLRQASF*QSVSFS
Trigger: AGAAAAGCTCACAGACTGGCAGAAGCTAGCCTGTCT...AAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGAAGAGCACTAATAGGCTaGAAGCTGTTTTTGAAGTTT +
Preference number: 4 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRRALIG*KLFLKF
Trigger: AAACTTCAAAAACAGCTTCCAGCCTATTAGTGCTCT...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTTACCATACTTCTCCCTaGGTTCAGCTGCACGGTCTC +
Preference number: 4 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTYHTSP*VQLHGL
Trigger: GAGACCGTGCAGCTGAACGCAGGGAGAAGTATGGTA...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTTCAAGGTTTTGCTTGTaGAGCCCAGAGAGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTSRFCL*SPESCW
Trigger: CCAGCAGCTCTCTGGGCTCCACAAGCAAAACCTTGA...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CCA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTAGAGCACTAATAGGCTaGAAGCTGTTTTTGAAGTTT +
Preference number: 4 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETRALIG*KLFLKF
Trigger: AAACTTCAAAAACAGCTTCCAGCCTATTAGTGCTCT...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR TCA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTAAGCCTCGGTTCAGCTaGGTCTGTTTGTCCTTGATA +
Preference number: 4 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTKPRFS*VCLSLI
Trigger: TATCAAGGACAAACAGACTCAGCTGAACCGAGGCTT...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp CCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGTTGAAGTTTTCTTTTTaGTTATTGAGACTGCGTGCC +
Preference number: 4 (lower is better)
Translates to: PISQQKSPTPSLIWLLWLLKFSF*LLRLRA
Trigger: GGCACGCAGTCTCAATAAGCAAAAAGAAAACTTCAA...CAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR GCA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTTTGAAGTTTTCTTTTTaGTTATTGAGACTGCGTGCC +
Preference number: 4 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTLKFSF*LLRLRA
Trigger: GGCACGCAGTCTCAATAAGCAAAAAGAAAACTTCAA...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS CCA 90 bp GGTCCGATAGTCCTGGTCCCGATAGTCGCCGTCTCTGGGGAAGCCTaGCGGGCCAGTGGGACTGTGCCTGTGCCGCCGCCGCCGCCTACG +
Preference number: 5 (lower is better)
Translates to: GPIVLVPIVAVSGEA*RASGTVPVPPPPPT
Trigger: CGTAGGCGGCGGCGGCGGCACAGGCACAGTCCCACTGGCCCGCCAGGCTTCCCCAGAGACGGCGACTATCGGGACCAGGACTATCGGACC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064911.7
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 90 bp CCCCTTGCTCGGTCCGATAGTCCTGGTCCCGATAGTCGCCGTCTCTaGGGAAGCCTGGCGGGCCAGTGGGACTGTGCCTGTGCCGCCGCC +
Preference number: 5 (lower is better)
Translates to: PLARSDSPGPDSRRL*GSLAGQWDCACAAA
Trigger: GGCGGCGGCACAGGCACAGTCCCACTGGCCCGCCAGGCTTCCCCAGAGACGGCGACTATCGGGACCAGGACTATCGGACCGAGCAAGGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064911.7
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 90 bp TTAGCTCCCGCCCACCCAGTGGCAGTGCCTGCTGATCCAGCCGAGTaGCCAGGGGCAGCTTCTGCTCTGCCTCTGATTTGGGCACACCAC +
Preference number: 5 (lower is better)
Translates to: LAPAHPVAVPADPAE*PGAASALPLIWAHH
Trigger: GTGGTGTGCCCAAATCAGAGGCAGAGCAGAAGCTGCCCCTGGGCACTCGGCTGGATCAGCAGGCACTGCCACTGGGTGGGCGGGAGCTAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 90 bp AGGCCTCAGGACCTGTTCCAGCTGGGTCCCCTTTGGTCCCAGTCATaGCAGGGCCCTTGCTGTTCTTCAGGTAGCCATGGGCATAGAGGG +
Preference number: 5 (lower is better)
Translates to: RPQDLFQLGPLWSQS*QGPCCSSGSHGHRG
Trigger: CCCTCTATGCCCATGGCTACCTGAAGAACAGCAAGGGCCCTGGCATGACTGGGACCAAAGGGGACCCAGCTGGAACAGGTCCTGAGGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 90 bp ACGTTGATGGTCTTGCCATCGATGGTGAGCGGAGGGTGCAGGGCCTaGAGGATCTGTAGCAGCTGGGCTGCTTCGATGGTGGAGAGCTGG +
Preference number: 5 (lower is better)
Translates to: TLMVLPSMVSGGCRA*RICSSWAASMVESW
Trigger: CCAGCTCTCCACCATCGAAGCAGCCCAGCTGCTACAGATCCTGCAGGCCCTGCACCCTCCGCTCACCATCGATGGCAAGACCATCAACGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 90 bp CAGCCTCAAGGGAGGCCTCAGGACCTGTTCCAGCTGGGTCCCCTTTaGTCCCAGTCATGCCAGGGCCCTTGCTGTTCTTCAGGTAGCCAT +
Preference number: 5 (lower is better)
Translates to: QPQGRPQDLFQLGPL*SQSCQGPCCSSGSH
Trigger: ATGGCTACCTGAAGAACAGCAAGGGCCCTGGCATGACTGGGACCAAAGGGGACCCAGCTGGAACAGGTCCTGAGGCCTCCCTTGAGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 90 bp GCAAACTCCACGTTGATGGTCTTGCCATCGATGGTGAGCGGAGGGTaGAGGGCCTGCAGGATCTGTAGCAGCTGGGCTGCTTCCACGATG +
Preference number: 5 (lower is better)
Translates to: ANSTLMVLPSMVSGG*RACRICSSWAASTM
Trigger: CATCGTGGAAGCAGCCCAGCTGCTACAGATCCTGCAGGCCCTGCACCCTCCGCTCACCATCGATGGCAAGACCATCAACGTGGAGTTTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
CDS GCA 90 bp GCAAACTCCACGTTGATGGTCTTGCCATCGATGGTGAGCGGAGGGTaGAGGGCCTGCAGGATCTGTAGCAGCTGGGCTGCTTCGATGGTG +
Preference number: 5 (lower is better)
Translates to: ANSTLMVLPSMVSGG*RACRICSSWAASMV
Trigger: CACCATCGAAGCAGCCCAGCTGCTACAGATCCTGCAGGCCCTGCACCCTCCGCTCACCATCGATGGCAAGACCATCAACGTGGAGTTTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 90 bp GGTCCCGGCTGCGGTTCTCTCCACTATCATCCTGTGAACGATCAGTaGCTCCATAGCGGCCAGTCCTGTCACCACGACCACCTCGTCTTT +
Preference number: 5 (lower is better)
Translates to: GPGCGSLHYHPVNDQ*LHSGQSCHHDHLVF
Trigger: AAAGACGAGGTGGTCGTGGTGACAGGACTGGCCGCTATGGAGCCACTGATCGTTCACAGGATGATAGTGGAGAGAACCGCAGCCGGGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS TCA 90 bp CACGGATGTCATCCTCAGTGGCTGCCTGTGGCAGCATCCTCAGCATaGCGATGTTACTGGCCTTCTCCTCCTCCTCCTCCTCATCCTCCT +
Preference number: 5 (lower is better)
Translates to: HGCHPQWLPVAASSA*RCYWPSPPPPPHPP
Trigger: AGGAGGATGAGGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACATCCGTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064911.7
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS TCA 90 bp CTGCTGATCCAGCCGAGTGCCCAGGGGCAGCTTCTGCTCTGCCTCTaGTTTGGGCACACCACATTTGAAGCACTTCTCTCGGCGCTTGAA +
Preference number: 5 (lower is better)
Translates to: LLIQPSAQGQLLLCL*FGHTTFEALLSALE
Trigger: TTCAAGCGCCGAGAGAAGTGCTTCAAATGTGGTGTGCCCAAATCAGAGGCAGAGCAGAAGCTGCCCCTGGGCACTCGGCTGGATCAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 90 bp CTGTTCCAGCTGGGTCCCCTTTGGTCCCAGTCATGCCAGGGCCCTTaGTGTTCTTCAGGTAGCCATGGGCATAGAGGGAATCTGTTCCCT +
Preference number: 5 (lower is better)
Translates to: LFQLGPLWSQSCQGP*CSSGSHGHRGNLFP
Trigger: AGGGAACAGATTCCCTCTATGCCCATGGCTACCTGAAGAACAGCAAGGGCCCTGGCATGACTGGGACCAAAGGGGACCCAGCTGGAACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 90 bp GAGGTGGGCTTGGGCGGTCATCACTGGCCAGCTTTGGGAGATCCATaGTGGTGTGCTGTCTTTCAGCTAGCGCTCCCTTCTTCTCAAGGA +
Preference number: 5 (lower is better)
Translates to: EVGLGGHHWPALGDP*WCAVFQLALPSSQG
Trigger: TCCTTGAGAAGAAGGGAGCGCTAGCTGAAAGACAGCACACCAGCATGGATCTCCCAAAGCTGGCCAGTGATGACCGCCCAAGCCCACCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 90 bp GGCCAGAACCTCGAACTCGTGTTTGGGCCTCAATGGGTGTCACAATaGCCTGTTTCTTGCGGCCCAGACCACTGCCTTCTTTCCAGCCCA +
Preference number: 5 (lower is better)
Translates to: GQNLELVFGPQWVSQ*PVSCGPDHCLLSSP
Trigger: TGGGCTGGAAAGAAGGCAGTGGTCTGGGCCGCAAGAAACAGGGCATTGTGACACCCATTGAGGCCCAAACACGAGTTCGAGGTTCTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 90 bp TTGTTCCGCATCAGCCGGACCTCCCGTGCTTGGACACCATGGGACTaGAGCTGTCCACGGATCTCTGCACTTTGCTCTTCAGATGAGTCG +
Preference number: 5 (lower is better)
Translates to: LFRISRTSRAWTPWD*SCPRISALCSSDES
Trigger: CGACTCATCTGAAGAGCAAAGTGCAGAGATCCGTGGACAGCTGCAGTCCCATGGTGTCCAAGCACGGGAGGTCCGGCTGATGCGGAACAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082089.14
ENSMUST00000084383.10
CDS CCA 90 bp GTGGGCTTGGGCGGTCATCACTGGCCAGCTTTGGGAGATCCATGCTaGTGTGCTGTCTTTCAGCTAGCGCTCCCTTCTTCTCAAGGATGG +
Preference number: 5 (lower is better)
Translates to: VGLGGHHWPALGDPC*CAVFQLALPSSQGW
Trigger: CCATCCTTGAGAAGAAGGGAGCGCTAGCTGAAAGACAGCACACCAGCATGGATCTCCCAAAGCTGGCCAGTGATGACCGCCCAAGCCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS TCA 90 bp GCGGGTCACCATTGTCTTGTGCAGTGTCTCCTTATAGGATTCTGTTaGGGTGACCCCATAGGAACTGCCCCTGGCACCCAGGCCAGAACC +
Preference number: 5 (lower is better)
Translates to: AGHHCLVQCLLIGFC*GDPIGTAPGTQART
Trigger: GGTTCTGGCCTGGGTGCCAGGGGCAGTTCCTATGGGGTCACCTCAACAGAATCCTATAAGGAGACACTGCACAAGACAATGGTGACCCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 90 bp GAGGATTTGTTCCGCATCAGCCGGACCTCCCGTGCTTGGACACCATaGGACTGCAGCTGTCCACGGATCTCTGCACTTTGCTCTTCAGAT +
Preference number: 5 (lower is better)
Translates to: EDLFRISRTSRAWTP*DCSCPRISALCSSD
Trigger: ATCTGAAGAGCAAAGTGCAGAGATCCGTGGACAGCTGCAGTCCCATGGTGTCCAAGCACGGGAGGTCCGGCTGATGCGGAACAAATCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082089.14
ENSMUST00000084383.10
CDS CCA 90 bp CACAGAGGCTGTAGATATGCCACCATACTTCCTCCGTTTGGGCTCTaGTGGCTCAGGGATACCATACTTCTCCCTGCGTTCAGCTGCACG +
Preference number: 5 (lower is better)
Translates to: HRGCRYATILPPFGL*WLRDTILLPAFSCT
Trigger: CGTGCAGCTGAACGCAGGGAGAAGTATGGTATCCCTGAGCCACCAGAGCCCAAACGGAGGAAGTATGGTGGCATATCTACAGCCTCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS-3UTR CAA 90 bp ACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGACCGGACCTCCCGTGCTaGGACACCATGGGACTGCAG +
Preference number: 5 (lower is better)
Translates to: TPSLIWLLWLGRRLVDRRPDLPC*DTMGLQ
Trigger: CTGCAGTCCCATGGTGTCCAAGCACGGGAGGTCCGG...TCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp CCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAACCGGACCTCCCGTGCTaGGACACCATGGGACTGCAG +
Preference number: 5 (lower is better)
Translates to: PFHSSSSLSLDGYPMSVEPDLPC*DTMGLQ
Trigger: CTGCAGTCCCATGGTGTCCAAGCACGGGAGGTCCGG...TTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp TGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTGGCGTTCTCGGAGCTaGGCTCTGAGCCCTGTGACA +
Preference number: 5 (lower is better)
Translates to: WLGRRLVDRRAFLRPFHSWRSRS*ALSPVT
Trigger: TGTCACAGGGCTCAGAGCCAAGCTCCGAGAACGCCA...ACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTGGGAGGCCTGTGAGATaGCCCACTGGGCAGCAGCAA +
Preference number: 5 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSGRPVR*PTGQQQ
Trigger: TTGCTGCTGCCCAGTGGGCAATCTCACAGGCCTCCC...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp GAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATCTCCTCCTCCTCCCCTaGCTCGGTCCGATAGTCCTG +
Preference number: 5 (lower is better)
Translates to: EEPSLDHSTVHLLCPSMDLLLLP*LGPIVL
Trigger: CAGGACTATCGGACCGAGCAAGGGGAGGAGGAGGAG...ATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTCTCCTCCTCCTCCCCTaGCTCGGTCCGATAGTCCTG +
Preference number: 5 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSLLLLP*LGPIVL
Trigger: CAGGACTATCGGACCGAGCAAGGGGAGGAGGAGGAG...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGCCGGACCTCCCGTGCTaGGACACCATGGGACTGCAG +
Preference number: 5 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWPDLPC*DTMGLQ
Trigger: CTGCAGTCCCATGGTGTCCAAGCACGGGAGGTCCGG...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS TCA 90 bp GTCATACTCATGCTTGCCCTCCTGACTGCCATACTCTCGTGGGTATaGGCGGTAGTCCATGTCTCTATAATCATGGTCCCGGCTGCGGTT +
Preference number: 5 (lower is better)
Translates to: VILMLALLTAILSWV*AVVHVSIIMVPAAV
Trigger: AACCGCAGCCGGGACCATGATTATAGAGACATGGACTACCGCTCATACCCACGAGAGTATGGCAGTCAGGAGGGCAAGCATGAGTATGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS TCA 90 bp TCACCATTGTCTTGTGCAGTGTCTCCTTATAGGATTCTGTTGAGGTaGCCCCATAGGAACTGCCCCTGGCACCCAGGCCAGAACCTCGAA +
Preference number: 5 (lower is better)
Translates to: SPLSCAVSPYRILLR*PHRNCPWHPGQNLE
Trigger: TTCGAGGTTCTGGCCTGGGTGCCAGGGGCAGTTCCTATGGGGTCACCTCAACAGAATCCTATAAGGAGACACTGCACAAGACAATGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 90 bp TCTTCAGGTAGCCATGGGCATAGAGGGAATCTGTTCCCTGGCTGCTaGCATAGCCCTCATCCTGTTGGTAGTAGCTGTAGTCAACTGGTG +
Preference number: 5 (lower is better)
Translates to: SSGSHGHRGNLFPGC*HSPHPVGSSCSQLV
Trigger: CACCAGTTGACTACAGCTACTACCAACAGGATGAGGGCTATGGCAGCAGCCAGGGAACAGATTCCCTCTATGCCCATGGCTACCTGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS-3UTR CAA 90 bp CTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTCACCGCTCCATGTCCTaGGCAATCTGTTGGGCTGTC +
Preference number: 5 (lower is better)
Translates to: LIWLLWLGRRLVDRRAFLHRSMS*AICWAV
Trigger: GACAGCCCAACAGATTGCCAAGGACATGGAGCGGTG...AAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp CCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCCATCACTGGCCAGCTTaGGGAGATCCATGCTGGTGT +
Preference number: 5 (lower is better)
Translates to: PSLIWLLWLGRRLVDRRAHHWPA*GDPCWC
Trigger: ACACCAGCATGGATCTCCCAAAGCTGGCCAGTGATG...GGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGAACAATGCCCTGTTTCTaGCGGCCCAGACCACTGCCT +
Preference number: 5 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRTMPCF*RPRPLP
Trigger: AGGCAGTGGTCTGGGCCGCAAGAAACAGGGCATTGT...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS GCA 90 bp TGTTCTTCAGGTAGCCATGGGCATAGAGGGAATCTGTTCCCTGGCTaGTGCCATAGCCCTCATCCTGTTGGTAGTAGCTGTAGTCAACTG +
Preference number: 5 (lower is better)
Translates to: CSSGSHGHRGNLFPG*CHSPHPVGSSCSQL
Trigger: CAGTTGACTACAGCTACTACCAACAGGATGAGGGCTATGGCAGCAGCCAGGGAACAGATTCCCTCTATGCCCATGGCTACCTGAAGAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS-3UTR CAA 90 bp ACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGACACAGCCAGTCCTCATaGATCTTGGGCTTGGGGTCG +
Preference number: 5 (lower is better)
Translates to: TPSLIWLLWLGRRLVDRRHSQSS*ILGLGS
Trigger: CGACCCCAAGCCCAAGATCAATGAGGACTGGCTGTG...TCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTGGCGTTCTCGGAGCTaGGCTCTGAGCCCTGTGACA +
Preference number: 5 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLWRSRS*ALSPVT
Trigger: TGTCACAGGGCTCAGAGCCAAGCTCCGAGAACGCCA...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGAGCCACAGAGGCAGCATaGATGCGACTGCCTTCATTG +
Preference number: 5 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRATEAA*MRLPSL
Trigger: CAATGAAGGCAGTCGCATCAATGCTGCCTCTGTGGC...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGCCACAGAGGCAGCATaGATGCGACTGCCTTCATTG +
Preference number: 5 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVATEAA*MRLPSL
Trigger: CAATGAAGGCAGTCGCATCAATGCTGCCTCTGTGGC...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGGGAGGCCTGTGAGATaGCCCACTGGGCAGCAGCAA +
Preference number: 5 (lower is better)
Translates to: NFPAKVTNSKSNLASLVGGRPVR*PTGQQQ
Trigger: TTGCTGCTGCCCAGTGGGCAATCTCACAGGCCTCCC...CCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp CCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTCTCTTTTCCCTCCTTaGATGATGCCCCCGTGTCCT +
Preference number: 5 (lower is better)
Translates to: PSLIWLLWLGRRLVDRRASLFPP*MMPPCP
Trigger: AGGACACGGGGGCATCATCAAAGGAGGGAAAAGAGA...GGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGCACAGCCAGTCCTCATaGATCTTGGGCTTGGGGTCG +
Preference number: 5 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWHSQSS*ILGLGS
Trigger: CGACCCCAAGCCCAAGATCAATGAGGACTGGCTGTG...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGCACAGCCAGTCCTCATaGATCTTGGGCTTGGGGTCG +
Preference number: 5 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLHSQSS*ILGLGS
Trigger: CGACCCCAAGCCCAAGATCAATGAGGACTGGCTGTG...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp TGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTTGGCAAACTCCACGTaGATGGTCTTGCCATCGATG +
Preference number: 5 (lower is better)
Translates to: WLGRRLVDRRAFLRPFHSLANST*MVLPSM
Trigger: CATCGATGGCAAGACCATCAACGTGGAGTTTGCCAA...ACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTATCTCTTTTCCCTCCTTaGATGATGCCCCCGTGTCCT +
Preference number: 5 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVSLFPP*MMPPCP
Trigger: AGGACACGGGGGCATCATCAAAGGAGGGAAAAGAGA...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGCACCGCTCCATGTCCTaGGCAATCTGTTGGGCTGTC +
Preference number: 5 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWHRSMS*AICWAV
Trigger: GACAGCCCAACAGATTGCCAAGGACATGGAGCGGTG...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGACAATGCCCTGTTTCTaGCGGCCCAGACCACTGCCT +
Preference number: 5 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLTMPCF*RPRPLP
Trigger: AGGCAGTGGTCTGGGCCGCAAGAAACAGGGCATTGT...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp GATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTTGGCGTTCTCGGAGCTaGGCTCTGAGCCCTGTGACA +
Preference number: 5 (lower is better)
Translates to: DLSPISQQKSPTPSLIWLWRSRS*ALSPVT
Trigger: TGTCACAGGGCTCAGAGCCAAGCTCCGAGAACGCCA...AAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTATTGGCAAACTCCACGTaGATGGTCTTGCCATCGATG +
Preference number: 5 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVLANST*MVLPSM
Trigger: CATCGATGGCAAGACCATCAACGTGGAGTTTGCCAA...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTATGCGACTGCCTTCATaGGAGGCCATATCCCTCTTA +
Preference number: 5 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSMRLPS*EAISLL
Trigger: TAAGAGGGATATGGCCTCCAATGAAGGCAGTCGCAT...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTGCCACAGAGGCAGCATaGATGCGACTGCCTTCATTG +
Preference number: 5 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETATEAA*MRLPSL
Trigger: CAATGAAGGCAGTCGCATCAATGCTGCCTCTGTGGC...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp TTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAGGGAGGCCTGTGAGATaGCCCACTGGGCAGCAGCAA +
Preference number: 5 (lower is better)
Translates to: LQKEHDLSPISQQKSPTPGRPVR*PTGQQQ
Trigger: TTGCTGCTGCCCAGTGGGCAATCTCACAGGCCTCCC...TGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp TGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTTTTCTTTTTGCTTATaGAGACTGCGTGCCCACCGC +
Preference number: 5 (lower is better)
Translates to: WLGRRLVDRRAFLRPFHSFSFCL*RLRAHR
Trigger: GCGGTGGGCACGCAGTCTCAATAAGCAAAAAGAAAA...ACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp ACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAATCTCAAGGTTTTGCTaGTGGAGCCCAGAGAGCTGC +
Preference number: 5 (lower is better)
Translates to: TPSLIWLLWLGRRLVDRRISRFC*WSPESC
Trigger: GCAGCTCTCTGGGCTCCACAAGCAAAACCTTGAGAT...TCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp GAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATATCTCAAGGTTTTGCTaGTGGAGCCCAGAGAGCTGC +
Preference number: 5 (lower is better)
Translates to: EEPSLDHSTVHLLCPSMDISRFC*WSPESC
Trigger: GCAGCTCTCTGGGCTCCACAAGCAAAACCTTGAGAT...ATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp ACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGATGCTCTGCCTCTGATTaGGGCACACCACATTTGAAG +
Preference number: 5 (lower is better)
Translates to: TPSLIWLLWLGRRLVDRRCSASD*GTPHLK
Trigger: CTTCAAATGTGGTGTGCCCAAATCAGAGGCAGAGCA...TCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp CCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGCATCACTGGCCAGCTTaGGGAGATCCATGCTGGTGT +
Preference number: 5 (lower is better)
Translates to: PISQQKSPTPSLIWLLWLHHWPA*GDPCWC
Trigger: ACACCAGCATGGATCTCCCAAAGCTGGCCAGTGATG...CAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAATGAATCTCAAGGTTTaGCTTGTGGAGCCCAGAGAG +
Preference number: 5 (lower is better)
Translates to: KSPTPSLIWLLWLGRRLVMNLKV*LVEPRE
Trigger: CTCTCTGGGCTCCACAAGCAAAACCTTGAGATTCAT...TACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp GATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTACAATGCCCTGTTTCTaGCGGCCCAGACCACTGCCT +
Preference number: 5 (lower is better)
Translates to: DLSPISQQKSPTPSLIWLTMPCF*RPRPLP
Trigger: AGGCAGTGGTCTGGGCCGCAAGAAACAGGGCATTGT...AAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS GCA 90 bp TTTGCTCTTCAGATGAGTCGTCATACTCATGCTTGCCCTCCTGACTaGCATACTCTCGTGGGTATGAGCGGTAGTCCATGTCTCTATAAT +
Preference number: 5 (lower is better)
Translates to: FALQMSRHTHACPPD*HTLVGMSGSPCLYN
Trigger: ATTATAGAGACATGGACTACCGCTCATACCCACGAGAGTATGGCAGTCAGGAGGGCAAGCATGAGTATGACGACTCATCTGAAGAGCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS-3UTR CAA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGATGCGACTGCCTTCATaGGAGGCCATATCCCTCTTA +
Preference number: 5 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLMRLPS*EAISLL
Trigger: TAAGAGGGATATGGCCTCCAATGAAGGCAGTCGCAT...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTATGCGACTGCCTTCATaGGAGGCCATATCCCTCTTA +
Preference number: 5 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETMRLPS*EAISLL
Trigger: TAAGAGGGATATGGCCTCCAATGAAGGCAGTCGCAT...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp CCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAGTCCTTGGCAATCTGTaGGGCTGTCTTTGTCTTATG +
Preference number: 5 (lower is better)
Translates to: PFHSSSSLSLDGYPMSVEVLGNL*GCLCLM
Trigger: CATAAGACAAAGACAGCCCAACAGATTGCCAAGGAC...TTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTCCTTGGCAATCTGTaGGGCTGTCTTTGTCTTATG +
Preference number: 5 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSVLGNL*GCLCLM
Trigger: CATAAGACAAAGACAGCCCAACAGATTGCCAAGGAC...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTTTTTCTTTTTGCTTATaGAGACTGCGTGCCCACCGC +
Preference number: 5 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSFSFCL*RLRAHR
Trigger: GCGGTGGGCACGCAGTCTCAATAAGCAAAAAGAAAA...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp GGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTGTTGGGCTGTCTTaGTCTTATGCTTCTCTTTCT +
Preference number: 5 (lower is better)
Translates to: GRRLVDRRAFLRPFHSSSSVGLS*SYASLS
Trigger: AGAAAGAGAAGCATAAGACAAAGACAGCCCAACAGA...AGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp ATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGCCTTCCTTAGATCTGTTGGGCTGTCTTaGTCTTATGCTTCTCTTTCT +
Preference number: 5 (lower is better)
Translates to: IWLLWLGRRLVDRRAFLRSVGLS*SYASLS
Trigger: AGAAAGAGAAGCATAAGACAAAGACAGCCCAACAGA...TCTAAGGAAGGCTCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGTCCTTGGCAATCTGTaGGGCTGTCTTTGTCTTATG +
Preference number: 5 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMVLGNL*GCLCLM
Trigger: CATAAGACAAAGACAGCCCAACAGATTGCCAAGGAC...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTTTTCTTTTTGCTTATaGAGACTGCGTGCCCACCGC +
Preference number: 5 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLFSFCL*RLRAHR
Trigger: GCGGTGGGCACGCAGTCTCAATAAGCAAAAAGAAAA...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTATGAATCTCAAGGTTTaGCTTGTGGAGCCCAGAGAG +
Preference number: 5 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETMNLKV*LVEPRE
Trigger: CTCTCTGGGCTCCACAAGCAAAACCTTGAGATTCAT...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGATTCGACTGCCAATGTaGTCACTGCCTAATCCATCC +
Preference number: 5 (lower is better)
Translates to: SPISQQKSPTPSLIWLLWIRLPM*SLPNPS
Trigger: GGATGGATTAGGCAGTGACAACATTGGCAGTCGAAT...CCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp TTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCATCTCTTTTCCCTCCTTaGATGATGCCCCCGTGTCCT +
Preference number: 5 (lower is better)
Translates to: LQKEHDLSPISQQKSPTPSLFPP*MMPPCP
Trigger: AGGACACGGGGGCATCATCAAAGGAGGGAAAAGAGA...TGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTATCTGTTGGGCTGTCTTaGTCTTATGCTTCTCTTTCT +
Preference number: 5 (lower is better)
Translates to: RPFHSSSSLSLDGYPMSVSVGLS*SYASLS
Trigger: AGAAAGAGAAGCATAAGACAAAGACAGCCCAACAGA...TACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp CCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGATGAATCTCAAGGTTTaGCTTGTGGAGCCCAGAGAG +
Preference number: 5 (lower is better)
Translates to: PISQQKSPTPSLIWLLWLMNLKV*LVEPRE
Trigger: CTCTCTGGGCTCCACAAGCAAAACCTTGAGATTCAT...CAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp CCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTCTCTGGTTGATTCGACTGCCAATGTaGTCACTGCCTAATCCATCC +
Preference number: 5 (lower is better)
Translates to: PISQQKSPTPSLIWLLWLIRLPM*SLPNPS
Trigger: GGATGGATTAGGCAGTGACAACATTGGCAGTCGAAT...CAACCAGAGAAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCATCACTGGCCAGCTTaGGGAGATCCATGCTGGTGT +
Preference number: 5 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTHHWPA*GDPCWC
Trigger: ACACCAGCATGGATCTCCCAAAGCTGGCCAGTGATG...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp ACTCCAAGTCTAATTTGGCTTCTCTGGTTGGGGAGGAGGCTGGTAGATAGAAGAGTCTCGATACTTCATTaGCTCCATGTCATTTTTCTC +
Preference number: 5 (lower is better)
Translates to: TPSLIWLLWLGRRLVDRRVSILH*LHVIFL
Trigger: GAGAAAAATGACATGGAGCAAATGAAGTATCGAGAC...TCTTCTATCTACCAGCCTCCTCCCCAACCAGAGAAGCCAAATTAGACTTGGAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp CTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTCTCGATACTTCATTaGCTCCATGTCATTTTTCTC +
Preference number: 5 (lower is better)
Translates to: LRPFHSSSSLSLDGYPMSVSILH*LHVIFL
Trigger: GAGAAAAATGACATGGAGCAAATGAAGTATCGAGAC...AGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp TTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAATTCGACTGCCAATGTaGTCACTGCCTAATCCATCC +
Preference number: 5 (lower is better)
Translates to: LQKEHDLSPISQQKSPTPIRLPM*SLPNPS
Trigger: GGATGGATTAGGCAGTGACAACATTGGCAGTCGAAT...TGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp TTATTACAAAAGGAACATGATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTTGCTCTGCCTCTGATTaGGGCACACCACATTTGAAG +
Preference number: 5 (lower is better)
Translates to: LLQKEHDLSPISQQKSPTCSASD*GTPHLK
Trigger: CTTCAAATGTGGTGTGCCCAAATCAGAGGCAGAGCA...AGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATCATGTTCCTTTTGTAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp AGGCTGGTAGATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTTTGAAGTTTTCTTTTaGCTTATTGAGACTGCGTGC +
Preference number: 5 (lower is better)
Translates to: RLVDRRAFLRPFHSSSSLFEVFF*LIETAC
Trigger: GCACGCAGTCTCAATAAGCAAAAAGAAAACTTCAAA...CAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTATCTACCAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp TTCCACAGTTCATCTTCTCTGTCCCTCGATGGATACCCCATGTCTGTAGAAACTTTTGAAGTTTTCTTTTaGCTTATTGAGACTGCGTGC +
Preference number: 5 (lower is better)
Translates to: FHSSSSLSLDGYPMSVETFEVFF*LIETAC
Trigger: GCACGCAGTCTCAATAAGCAAAAAGAAAACTTCAAA...AGTTTCTACAGACATGGGGTATCCATCGAGGGACAGAGAAGATGAACTGTGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp ATAGAAGAGCCTTCCTTAGACCATTCCACAGTTCATCTTCTCTGTCCCTCGATGTTTGAAGTTTTCTTTTaGCTTATTGAGACTGCGTGC +
Preference number: 5 (lower is better)
Translates to: IEEPSLDHSTVHLLCPSMFEVFF*LIETAC
Trigger: GCACGCAGTCTCAATAAGCAAAAAGAAAACTTCAAA...CATCGAGGGACAGAGAAGATGAACTGTGGAATGGTCTAAGGAAGGCTCTTCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS-3UTR CAA 90 bp GATTTGAGCCCAATTTCCCAGCAAAAGTCACCAACTCCAAGTCTAATTTGGCTTGTCTCGATACTTCATTaGCTCCATGTCATTTTTCTC +
Preference number: 5 (lower is better)
Translates to: DLSPISQQKSPTPSLIWLVSILH*LHVIFL
Trigger: GAGAAAAATGACATGGAGCAAATGAAGTATCGAGAC...AAGCCAAATTAGACTTGGAGTTGGTGACTTTTGCTGGGAAATTGGGCTCAAATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
CDS CCA 72 bp GTCCTGGTCCCGATAGTCGCCGTCTCTGGGGAAGCCTaGCGGGCCAGTGGGACTGTGCCTGTGCCGCCGCCG +
Preference number: 6 (lower is better)
Translates to: VLVPIVAVSGEA*RASGTVPVPPP
Trigger: CGGCGGCGGCACAGGCACAGTCCCACTGGCCCGCCAGGCTTCCCCAGAGACGGCGACTATCGGGACCAGGAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064911.7
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 72 bp CGGTCCGATAGTCCTGGTCCCGATAGTCGCCGTCTCTaGGGAAGCCTGGCGGGCCAGTGGGACTGTGCCTGT +
Preference number: 6 (lower is better)
Translates to: RSDSPGPDSRRL*GSLAGQWDCAC
Trigger: ACAGGCACAGTCCCACTGGCCCGCCAGGCTTCCCCAGAGACGGCGACTATCGGGACCAGGACTATCGGACCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064911.7
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 72 bp GCCCACCCAGTGGCAGTGCCTGCTGATCCAGCCGAGTaGCCAGGGGCAGCTTCTGCTCTGCCTCTGATTTGG +
Preference number: 6 (lower is better)
Translates to: AHPVAVPADPAE*PGAASALPLIW
Trigger: CCAAATCAGAGGCAGAGCAGAAGCTGCCCCTGGGCACTCGGCTGGATCAGCAGGCACTGCCACTGGGTGGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS TCA 72 bp GGCAGCACCAGGCTGGGCTCGAGAGAAAGCCTGCAGTaGCACAGAGTCTGCTCCAGCCTCAAGGGAGGCCTC +
Preference number: 6 (lower is better)
Translates to: GSTRLGSRESLQ*HRVCSSLKGGL
Trigger: GAGGCCTCCCTTGAGGCTGGAGCAGACTCTGTGTCACTGCAGGCTTTCTCTCGAGCCCAGCCTGGTGCTGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 72 bp CCACCAGCCCTCGAGGTGGGCTTGGGCGGTCATCACTaGCCAGCTTTGGGAGATCCATGCTGGTGTGCTGTC +
Preference number: 6 (lower is better)
Translates to: PPALEVGLGGHH*PALGDPCWCAV
Trigger: GACAGCACACCAGCATGGATCTCCCAAAGCTGGCCAGTGATGACCGCCCAAGCCCACCTCGAGGGCTGGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 72 bp ACTCTCCCCACTATAGGCTGCCACCAGCCCTCGAGGTaGGCTTGGGCGGTCATCACTGGCCAGCTTTGGGAG +
Preference number: 6 (lower is better)
Translates to: TLPTIGCHQPSR*AWAVITGQLWE
Trigger: CTCCCAAAGCTGGCCAGTGATGACCGCCCAAGCCCACCTCGAGGGCTGGTGGCAGCCTATAGTGGGGAGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 72 bp CTCCTCCTCCTCATCCTCCTCCTCCTCCTCCTCCCCTaGCTCGGTCCGATAGTCCTGGTCCCGATAGTCGCC +
Preference number: 6 (lower is better)
Translates to: LLLLILLLLLLP*LGPIVLVPIVA
Trigger: GGCGACTATCGGGACCAGGACTATCGGACCGAGCAAGGGGAGGAGGAGGAGGAGGAGGATGAGGAGGAGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064911.7
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 72 bp CCCCACTATAGGCTGCCACCAGCCCTCGAGGTGGGCTaGGGCGGTCATCACTGGCCAGCTTTGGGAGATCCA +
Preference number: 6 (lower is better)
Translates to: PHYRLPPALEVG*GGHHWPALGDP
Trigger: TGGATCTCCCAAAGCTGGCCAGTGATGACCGCCCAAGCCCACCTCGAGGGCTGGTGGCAGCCTATAGTGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 90 bp CTTCTCCTCCTCCTCCTCCTCATCCTCCTCCTCCTCCTCCTCCCCTaGCTCGGTCCGATAGTCCTGGTCCCGATAGTCGCCGTCTCTGGG +
Preference number: 6 (lower is better)
Translates to: LLLLLLLILLLLLLP*LGPIVLVPIVAVSG
Trigger: CCCAGAGACGGCGACTATCGGGACCAGGACTATCGGACCGAGCAAGGGGAGGAGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGGAGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000064911.7
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 90 bp CCACCAGCCCTCGAGGTGGGCTTGGGCGGTCATCACTGGCCAGCTTaGGGAGATCCATGCTGGTGTGCTGTCTTTCAGCTAGCGCTCCCT +
Preference number: 6 (lower is better)
Translates to: PPALEVGLGGHHWPA*GDPCWCAVFQLALP
Trigger: AGGGAGCGCTAGCTGAAAGACAGCACACCAGCATGGATCTCCCAAAGCTGGCCAGTGATGACCGCCCAAGCCCACCTCGAGGGCTGGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS TCA 72 bp TTTGCTTGTGGAGCCCAGAGAGCTGCTGGTGCCGGATaGGTGCCTCCTTGCTGGGAAACTGGCGGCGGCAGA +
Preference number: 6 (lower is better)
Translates to: FACGAQRAAGAG*VPPCWETGGGR
Trigger: TCTGCCGCCGCCAGTTTCCCAGCAAGGAGGCACTCATCCGGCACCAGCAGCTCTCTGGGCTCCACAAGCAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 72 bp GGGAGGCCTCAGGACCTGTTCCAGCTGGGTCCCCTTTaGTCCCAGTCATGCCAGGGCCCTTGCTGTTCTTCA +
Preference number: 6 (lower is better)
Translates to: GRPQDLFQLGPL*SQSCQGPCCSS
Trigger: TGAAGAACAGCAAGGGCCCTGGCATGACTGGGACCAAAGGGGACCCAGCTGGAACAGGTCCTGAGGCCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 72 bp AGGGAGGCCTCAGGACCTGTTCCAGCTGGGTCCCCTTaGGTCCCAGTCATGCCAGGGCCCTTGCTGTTCTTC +
Preference number: 6 (lower is better)
Translates to: REASGPVPAGSP*VPVMPGPLLFF
Trigger: GAAGAACAGCAAGGGCCCTGGCATGACTGGGACCAAAGGGGACCCAGCTGGAACAGGTCCTGAGGCCTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 72 bp GACCTGTTCCAGCTGGGTCCCCTTTGGTCCCAGTCATaGCAGGGCCCTTGCTGTTCTTCAGGTAGCCATGGG +
Preference number: 6 (lower is better)
Translates to: DLFQLGPLWSQS*QGPCCSSGSHG
Trigger: CCCATGGCTACCTGAAGAACAGCAAGGGCCCTGGCATGACTGGGACCAAAGGGGACCCAGCTGGAACAGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 72 bp TTCCGCATCAGCCGGACCTCCCGTGCTTGGACACCATaGGACTGCAGCTGTCCACGGATCTCTGCACTTTGC +
Preference number: 6 (lower is better)
Translates to: FRISRTSRAWTP*DCSCPRISALC
Trigger: GCAAAGTGCAGAGATCCGTGGACAGCTGCAGTCCCATGGTGTCCAAGCACGGGAGGTCCGGCTGATGCGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082089.14
ENSMUST00000084383.10
CDS CCA 72 bp ATAGCCCTCATCCTGTTGGTAGTAGCTGTAGTCAACTaGTGGCTCCTCGGGGGCAGCCCAGGCACTCTCTCC +
Preference number: 6 (lower is better)
Translates to: IALILLVVAVVN*WLLGGSPGTLS
Trigger: GGAGAGAGTGCCTGGGCTGCCCCCGAGGAGCCACCAGTTGACTACAGCTACTACCAACAGGATGAGGGCTAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 72 bp CGAGTGCCCAGGGGCAGCTTCTGCTCTGCCTCTGATTaGGGCACACCACATTTGAAGCACTTCTCTCGGCGC +
Preference number: 6 (lower is better)
Translates to: RVPRGSFCSASD*GTPHLKHFSRR
Trigger: GCGCCGAGAGAAGTGCTTCAAATGTGGTGTGCCCAAATCAGAGGCAGAGCAGAAGCTGCCCCTGGGCACTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS TCA 72 bp ATGGTCCCGGCTGCGGTTCTCTCCACTATCATCCTGTaGACGATCAGTGGCTCCATAGCGGCCAGTCCTGTC +
Preference number: 6 (lower is better)
Translates to: MVPAAVLSTIIL*TISGSIAASPV
Trigger: GACAGGACTGGCCGCTATGGAGCCACTGATCGTTCACAGGATGATAGTGGAGAGAACCGCAGCCGGGACCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS TCA 72 bp CATCCTCAGTGGCTGCCTGTGGCAGCATCCTCAGCATaGCGATGTTACTGGCCTTCTCCTCCTCCTCCTCCT +
Preference number: 6 (lower is better)
Translates to: HPQWLPVAASSA*RCYWPSPPPPP
Trigger: AGGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000064911.7
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS TCA 72 bp CAGCCGAGTGCCCAGGGGCAGCTTCTGCTCTGCCTCTaGTTTGGGCACACCACATTTGAAGCACTTCTCTCG +
Preference number: 6 (lower is better)
Translates to: QPSAQGQLLLCL*FGHTTFEALLS
Trigger: CGAGAGAAGTGCTTCAAATGTGGTGTGCCCAAATCAGAGGCAGAGCAGAAGCTGCCCCTGGGCACTCGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 72 bp CTGGGTCCCCTTTGGTCCCAGTCATGCCAGGGCCCTTaGTGTTCTTCAGGTAGCCATGGGCATAGAGGGAAT +
Preference number: 6 (lower is better)
Translates to: LGPLWSQSCQGP*CSSGSHGHRGN
Trigger: ATTCCCTCTATGCCCATGGCTACCTGAAGAACAGCAAGGGCCCTGGCATGACTGGGACCAAAGGGGACCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 72 bp ATCAGCCGGACCTCCCGTGCTTGGACACCATGGGACTaGAGCTGTCCACGGATCTCTGCACTTTGCTCTTCA +
Preference number: 6 (lower is better)
Translates to: ISRTSRAWTPWD*SCPRISALCSS
Trigger: TGAAGAGCAAAGTGCAGAGATCCGTGGACAGCTGCAGTCCCATGGTGTCCAAGCACGGGAGGTCCGGCTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000082089.14
ENSMUST00000084383.10
CDS CCA 72 bp CCCCTGGCACCCAGGCCAGAACCTCGAACTCGTGTTTaGGCCTCAATGGGTGTCACAATGCCCTGTTTCTTG +
Preference number: 6 (lower is better)
Translates to: PLAPRPEPRTRV*ASMGVTMPCFL
Trigger: CAAGAAACAGGGCATTGTGACACCCATTGAGGCCCAAACACGAGTTCGAGGTTCTGGCCTGGGTGCCAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 72 bp CTCTTAGAACCCTTGGCAAACTCCACGTTGATGGTCTaGCCATCGATGGTGAGCGGAGGGTGCAGGGCCTGC +
Preference number: 6 (lower is better)
Translates to: LLEPLANSTLMV*PSMVSGGCRAC
Trigger: GCAGGCCCTGCACCCTCCGCTCACCATCGATGGCAAGACCATCAACGTGGAGTTTGCCAAGGGTTCTAAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 72 bp CTCGAGGTGGGCTTGGGCGGTCATCACTGGCCAGCTTaGGGAGATCCATGCTGGTGTGCTGTCTTTCAGCTA +
Preference number: 6 (lower is better)
Translates to: LEVGLGGHHWPA*GDPCWCAVFQL
Trigger: TAGCTGAAAGACAGCACACCAGCATGGATCTCCCAAAGCTGGCCAGTGATGACCGCCCAAGCCCACCTCGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 90 bp GCCATATCCCTCTTAGAACCCTTGGCAAACTCCACGTTGATGGTCTaGCCATCGATGGTGAGCGGAGGGTGCAGGGCCTGCAGGATCTGT +
Preference number: 6 (lower is better)
Translates to: AISLLEPLANSTLMV*PSMVSGGCRACRIC
Trigger: ACAGATCCTGCAGGCCCTGCACCCTCCGCTCACCATCGATGGCAAGACCATCAACGTGGAGTTTGCCAAGGGTTCTAAGAGGGATATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 90 bp TCATTGGAGGCCATATCCCTCTTAGAACCCTTGGCAAACTCCACGTaGATGGTCTTGCCATCGATGGTGAGCGGAGGGTGCAGGGCCTGC +
Preference number: 6 (lower is better)
Translates to: SLEAISLLEPLANST*MVLPSMVSGGCRAC
Trigger: GCAGGCCCTGCACCCTCCGCTCACCATCGATGGCAAGACCATCAACGTGGAGTTTGCCAAGGGTTCTAAGAGGGATATGGCCTCCAATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 72 bp TTGGGCGGTCATCACTGGCCAGCTTTGGGAGATCCATaGTGGTGTGCTGTCTTTCAGCTAGCGCTCCCTTCT +
Preference number: 6 (lower is better)
Translates to: LGGHHWPALGDP*WCAVFQLALPS
Trigger: AGAAGGGAGCGCTAGCTGAAAGACAGCACACCAGCATGGATCTCCCAAAGCTGGCCAGTGATGACCGCCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 72 bp TGCGGTTCTCTCCACTATCATCCTGTGAACGATCAGTaGCTCCATAGCGGCCAGTCCTGTCACCACGACCAC +
Preference number: 6 (lower is better)
Translates to: CGSLHYHPVNDQ*LHSGQSCHHDH
Trigger: GTGGTCGTGGTGACAGGACTGGCCGCTATGGAGCCACTGATCGTTCACAGGATGATAGTGGAGAGAACCGCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 72 bp GGCGGTCATCACTGGCCAGCTTTGGGAGATCCATGCTaGTGTGCTGTCTTTCAGCTAGCGCTCCCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: GGHHWPALGDPC*CAVFQLALPSS
Trigger: AGAAGAAGGGAGCGCTAGCTGAAAGACAGCACACCAGCATGGATCTCCCAAAGCTGGCCAGTGATGACCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 72 bp ATCTCAAGGTTTTGCTTGTGGAGCCCAGAGAGCTGCTaGTGCCGGATGAGTGCCTCCTTGCTGGGAAACTGG +
Preference number: 6 (lower is better)
Translates to: ISRFCLWSPESC*CRMSASLLGNW
Trigger: CCAGTTTCCCAGCAAGGAGGCACTCATCCGGCACCAGCAGCTCTCTGGGCTCCACAAGCAAAACCTTGAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 72 bp GGTAGCCATGGGCATAGAGGGAATCTGTTCCCTGGCTaGTGCCATAGCCCTCATCCTGTTGGTAGTAGCTGT +
Preference number: 6 (lower is better)
Translates to: GSHGHRGNLFPG*CHSPHPVGSSC
Trigger: ACAGCTACTACCAACAGGATGAGGGCTATGGCAGCAGCCAGGGAACAGATTCCCTCTATGCCCATGGCTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 72 bp CTCGAACTCGTGTTTGGGCCTCAATGGGTGTCACAATaGCCTGTTTCTTGCGGCCCAGACCACTGCCTTCTT +
Preference number: 6 (lower is better)
Translates to: LELVFGPQWVSQ*PVSCGPDHCLL
Trigger: AAGAAGGCAGTGGTCTGGGCCGCAAGAAACAGGGCATTGTGACACCCATTGAGGCCCAAACACGAGTTCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 72 bp GCCATATCCCTCTTAGAACCCTTGGCAAACTCCACGTaGATGGTCTTGCCATCGATGGTGAGCGGAGGGTGC +
Preference number: 6 (lower is better)
Translates to: AISLLEPLANST*MVLPSMVSGGC
Trigger: GCACCCTCCGCTCACCATCGATGGCAAGACCATCAACGTGGAGTTTGCCAAGGGTTCTAAGAGGGATATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 72 bp AGCACAGCAGGTGATATGATGGTGTATGACTGGCTGTaGGTAGCAGTGCTCTGGCCACTGCTCCCCTCAGCT +
Preference number: 6 (lower is better)
Translates to: STAGDMMVYDWL*VAVLWPLLPSA
Trigger: AGCTGAGGGGAGCAGTGGCCAGAGCACTGCTACCAACAGCCAGTCATACACCATCATATCACCTGCTGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 90 bp CCCAGGGGCAGCTTCTGCTCTGCCTCTGATTTGGGCACACCACATTaGAAGCACTTCTCTCGGCGCTTGAAGTTCTGGACACCACACTTA +
Preference number: 6 (lower is better)
Translates to: PRGSFCSASDLGTPH*KHFSRRLKFWTPHL
Trigger: TAAGTGTGGTGTCCAGAACTTCAAGCGCCGAGAGAAGTGCTTCAAATGTGGTGTGCCCAAATCAGAGGCAGAGCAGAAGCTGCCCCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 72 bp AGCCATGGGCATAGAGGGAATCTGTTCCCTGGCTGCTaGCATAGCCCTCATCCTGTTGGTAGTAGCTGTAGT +
Preference number: 6 (lower is better)
Translates to: SHGHRGNLFPGC*HSPHPVGSSCS
Trigger: ACTACAGCTACTACCAACAGGATGAGGGCTATGGCAGCAGCCAGGGAACAGATTCCCTCTATGCCCATGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 72 bp TCATCACTGGCCAGCTTTGGGAGATCCATGCTGGTGTaGTGTCTTTCAGCTAGCGCTCCCTTCTTCTCAAGG +
Preference number: 6 (lower is better)
Translates to: SSLASFGRSMLV*CLSASAPFFSR
Trigger: CCTTGAGAAGAAGGGAGCGCTAGCTGAAAGACAGCACACCAGCATGGATCTCCCAAAGCTGGCCAGTGATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 72 bp CTGGCCACAGAGGCAGCATTGATGCGACTGCCTTCATaGGAGGCCATATCCCTCTTAGAACCCTTGGCAAAC +
Preference number: 6 (lower is better)
Translates to: LATEAALMRLPS*EAISLLEPLAN
Trigger: GTTTGCCAAGGGTTCTAAGAGGGATATGGCCTCCAATGAAGGCAGTCGCATCAATGCTGCCTCTGTGGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS TCA 72 bp ATGCTTGCCCTCCTGACTGCCATACTCTCGTGGGTATaGGCGGTAGTCCATGTCTCTATAATCATGGTCCCG +
Preference number: 6 (lower is better)
Translates to: MLALLTAILSWV*AVVHVSIIMVP
Trigger: CGGGACCATGATTATAGAGACATGGACTACCGCTCATACCCACGAGAGTATGGCAGTCAGGAGGGCAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 72 bp CAGATGAGTCGTCATACTCATGCTTGCCCTCCTGACTaGCATACTCTCGTGGGTATGAGCGGTAGTCCATGT +
Preference number: 6 (lower is better)
Translates to: QMSRHTHACPPD*HTLVGMSGSPC
Trigger: ACATGGACTACCGCTCATACCCACGAGAGTATGGCAGTCAGGAGGGCAAGCATGAGTATGACGACTCATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 72 bp CCATGGCCTGGAGCATTCGACTGCCAATGTTGTCACTaGCTAATCCATCCCGAGTGGGTTGTTCAAAGTCCA +
Preference number: 6 (lower is better)
Translates to: PWPGAFDCQCCH*LIHPEWVVQSP
Trigger: TGGACTTTGAACAACCCACTCGGGATGGATTAGGCAGTGACAACATTGGCAGTCGAATGCTCCAGGCCATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 72 bp ACAGAGGCTGTAGATATGCCACCATACTTCCTCCGTTaGGGCTCTGGTGGCTCAGGGATACCATACTTCTCC +
Preference number: 6 (lower is better)
Translates to: TEAVDMPPYFLR*GSGGSGIPYFS
Trigger: GGAGAAGTATGGTATCCCTGAGCCACCAGAGCCCAAACGGAGGAAGTATGGTGGCATATCTACAGCCTCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 90 bp TCAAAGTCCACAGAGGCTGTAGATATGCCACCATACTTCCTCCGTTaGGGCTCTGGTGGCTCAGGGATACCATACTTCTCCCTGCGTTCA +
Preference number: 6 (lower is better)
Translates to: SKSTEAVDMPPYFLR*GSGGSGIPYFSLRS
Trigger: TGAACGCAGGGAGAAGTATGGTATCCCTGAGCCACCAGAGCCCAAACGGAGGAAGTATGGTGGCATATCTACAGCCTCTGTGGACTTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS TCA 72 bp GCTTCCAATTCGTTTTCTGACAAGTGGGCTCGCCGATaGATCTCAAGGTTTTGCTTGTGGAGCCCAGAGAGC +
Preference number: 6 (lower is better)
Translates to: ASNSFSDKWARR*ISRFCLWSPES
Trigger: GCTCTCTGGGCTCCACAAGCAAAACCTTGAGATTCATCGGCGAGCCCACTTGTCAGAAAACGAATTGGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 72 bp TGCTTATTGAGACTGCGTGCCCACCGCTCCATGTCCTaGGCAATCTGTTGGGCTGTCTTTGTCTTATGCTTC +
Preference number: 6 (lower is better)
Translates to: CLLRLRAHRSMS*AICWAVFVLCF
Trigger: GAAGCATAAGACAAAGACAGCCCAACAGATTGCCAAGGACATGGAGCGGTGGGCACGCAGTCTCAATAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 90 bp GCCTCTGATTTGGGCACACCACATTTGAAGCACTTCTCTCGGCGCTaGAAGTTCTGGACACCACACTTATTACACAGCCAGTCCTCATTG +
Preference number: 6 (lower is better)
Translates to: ASDLGTPHLKHFSRR*KFWTPHLLHSQSSL
Trigger: CAATGAGGACTGGCTGTGTAATAAGTGTGGTGTCCAGAACTTCAAGCGCCGAGAGAAGTGCTTCAAATGTGGTGTGCCCAAATCAGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS GCA 72 bp TGGCTCAGGGATACCATACTTCTCCCTGCGTTCAGCTaGACGGTCTCGATACTTCATTTGCTCCATGTCATT +
Preference number: 6 (lower is better)
Translates to: WLRDTILLPAFS*TVSILHLLHVI
Trigger: AATGACATGGAGCAAATGAAGTATCGAGACCGTGCAGCTGAACGCAGGGAGAAGTATGGTATCCCTGAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CCA 72 bp CCACATTTGAAGCACTTCTCTCGGCGCTTGAAGTTCTaGACACCACACTTATTACACAGCCAGTCCTCATTG +
Preference number: 6 (lower is better)
Translates to: PHLKHFSRRLKF*TPHLLHSQSSL
Trigger: CAATGAGGACTGGCTGTGTAATAAGTGTGGTGTCCAGAACTTCAAGCGCCGAGAGAAGTGCTTCAAATGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 72 bp CTGGGGGTCATAGTAGTAGCCAGATGTCTCATCATATaGGTAAGTAGAGACATCAGGAACAGGGTACTGGCT +
Preference number: 6 (lower is better)
Translates to: LGVIVVARCLII*VSRDIRNRVLA
Trigger: AGCCAGTACCCTGTTCCTGATGTCTCTACTTACCAATATGATGAGACATCTGGCTACTACTATGACCCCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8
CDS CAA 90 bp TTTTCTTTTTGCTTATTGAGACTGCGTGCCCACCGCTCCATGTCCTaGGCAATCTGTTGGGCTGTCTTTGTCTTATGCTTCTCTTTCTTC +
Preference number: 6 (lower is better)
Translates to: FSFCLLRLRAHRSMS*AICWAVFVLCFSFF
Trigger: GAAGAAAGAGAAGCATAAGACAAAGACAGCCCAACAGATTGCCAAGGACATGGAGCGGTGGGCACGCAGTCTCAATAAGCAAAAAGAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000064911.7
ENSMUST00000082089.14
ENSMUST00000084383.10
ENSMUST00000115374.8
ENSMUST00000115375.8
ENSMUST00000177738.8