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Pregenerated sensors for RBKS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029136

Ensembl transcript IDs: ENSMUST00000031018.10

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GGAGAGGGTATAGAACTGGGGGTCCAGGTCAGCCATGGCTGGAGCTaGGTTGAACAAGGTTTTCACTCCACTCCTGCGGGCCATTGTCAG +
Preference number: 5 (lower is better)
Translates to: GEGIELGVQVSHGWS*VEQGFHSTPAGHCQ
Trigger: CTGACAATGGCCCGCAGGAGTGGAGTGAAAACCTTGTTCAACCCAGCTCCAGCCATGGCTGACCTGGACCCCCAGTTCTATACCCTCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS CCA 90 bp AATACTGGAGAGGGTATAGAACTGGGGGTCCAGGTCAGCCATGGCTaGAGCTGGGTTGAACAAGGTTTTCACTCCACTCCTGCGGGCCAT +
Preference number: 5 (lower is better)
Translates to: NTGEGIELGVQVSHG*SWVEQGFHSTPAGH
Trigger: ATGGCCCGCAGGAGTGGAGTGAAAACCTTGTTCAACCCAGCTCCAGCCATGGCTGACCTGGACCCCCAGTTCTATACCCTCTCCAGTATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS GCA 90 bp CCAGCACCCGTGGTGTCTACAGCCTTGACAGCTTCAGTGGGAATGTaGTTTGGAACAGGCTCAGCCTGTGACAGTATCACGCATCCTGAA +
Preference number: 5 (lower is better)
Translates to: PAPVVSTALTASVGM*FGTGSACDSITHPE
Trigger: TTCAGGATGCGTGATACTGTCACAGGCTGAGCCTGTTCCAAAGCACATTCCCACTGAAGCTGTCAAGGCTGTAGACACCACGGGTGCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS GCA 90 bp TTTGTATGGATAAGAGGACTGTGTTCCCGTGGCCTGTACACTGACTaGAGCGATGAAATTGGATCTCTTGAGCATTTCTTCCAAGGACAG +
Preference number: 5 (lower is better)
Translates to: FVWIRGLCSRGLYTD*SDEIGSLEHFFQGQ
Trigger: CTGTCCTTGGAAGAAATGCTCAAGAGATCCAATTTCATCGCTGCAGTCAGTGTACAGGCCACGGGAACACAGTCCTCTTATCCATACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS GCA 90 bp GACACTGGCTGCCTTCTTCAAGTCTTCAGAATTCAAAAACAGATTTaGTCCAGCCACTATGACGATGATATTCTGGCCTTCATTATTGAC +
Preference number: 5 (lower is better)
Translates to: DTGCLLQVFRIQKQI*SSHYDDDILAFIID
Trigger: GTCAATAATGAAGGCCAGAATATCATCGTCATAGTGGCTGGAGCAAATCTGTTTTTGAATTCTGAAGACTTGAAGAAGGCAGCCAGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS GCA 90 bp ATTCTGGCCTTCATTATTGACAATTATGGAGGCTGTTCCTGTAGCTaGATCTCTGGTCTGATATGTAAACTCTGTAGAAATATGATTTTG +
Preference number: 5 (lower is better)
Translates to: ILAFIIDNYGGCSCS*ISGLICKLCRNMIL
Trigger: CAAAATCATATTTCTACAGAGTTTACATATCAGACCAGAGATGCAGCTACAGGAACAGCCTCCATAATTGTCAATAATGAAGGCCAGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS CCA 72 bp GCAGCCTTCCCAGCCGTGGTGGGGTCACTCACTGCGTaGCCTGTTAAAATCTCAGCCTCGCTCTCGTTGCAG +
Preference number: 6 (lower is better)
Translates to: AAFPAVVGSLTA*PVKISASLSLQ
Trigger: CTGCAACGAGAGCGAGGCTGAGATTTTAACAGGCCACGCAGTGAGTGACCCCACCACGGCTGGGAAGGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS CAA 72 bp GCAGACTATGGCCGCCTTTGCTCCCAGTCGCGCAGCTaGGACACACTGGTTGGCACCTTTTCCTCCAAAGCC +
Preference number: 6 (lower is better)
Translates to: ADYGRLCSQSRS*DTLVGTFSSKA
Trigger: GGCTTTGGAGGAAAAGGTGCCAACCAGTGTGTCCAAGCTGCGCGACTGGGAGCAAAGGCGGCCATAGTCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS GCA 72 bp AGAATCGTTGCCAACCTTGCAGACTATGGCCGCCTTTaGTCCCAGTCGCGCAGCTTGGACACACTGGTTGGC +
Preference number: 6 (lower is better)
Translates to: RIVANLADYGRL*SQSRSLDTLVG
Trigger: GCCAACCAGTGTGTCCAAGCTGCGCGACTGGGAGCAAAGGCGGCCATAGTCTGCAAGGTTGGCAACGATTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS CCA 72 bp CAGACTATGGCCGCCTTTGCTCCCAGTCGCGCAGCTTaGACACACTGGTTGGCACCTTTTCCTCCAAAGCCA +
Preference number: 6 (lower is better)
Translates to: QTMAAFAPSRAA*THWLAPFPPKP
Trigger: TGGCTTTGGAGGAAAAGGTGCCAACCAGTGTGTCCAAGCTGCGCGACTGGGAGCAAAGGCGGCCATAGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS CCA 72 bp ATAGAACTGGGGGTCCAGGTCAGCCATGGCTGGAGCTaGGTTGAACAAGGTTTTCACTCCACTCCTGCGGGC +
Preference number: 6 (lower is better)
Translates to: IELGVQVSHGWS*VEQGFHSTPAG
Trigger: GCCCGCAGGAGTGGAGTGAAAACCTTGTTCAACCCAGCTCCAGCCATGGCTGACCTGGACCCCCAGTTCTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS TCA 72 bp CAAAACTGTCACCAGCACCCGTGGTGTCTACAGCCTTaGCAGCTTCAGTGGGAATGTGCTTTGGAACAGGCT +
Preference number: 6 (lower is better)
Translates to: QNCHQHPWCLQP*QLQWECALEQA
Trigger: AGCCTGTTCCAAAGCACATTCCCACTGAAGCTGTCAAGGCTGTAGACACCACGGGTGCTGGTGACAGTTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS CCA 72 bp AAATCTCAGCCTCGCTCTCGTTGCAGCAGAAAATACTaGAGAGGGTATAGAACTGGGGGTCCAGGTCAGCCA +
Preference number: 6 (lower is better)
Translates to: KSQPRSRCSRKY*RGYRTGGPGQP
Trigger: TGGCTGACCTGGACCCCCAGTTCTATACCCTCTCCAGTATTTTCTGCTGCAACGAGAGCGAGGCTGAGATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS CAA 72 bp ACAAAACTGTCACCAGCACCCGTGGTGTCTACAGCCTaGACAGCTTCAGTGGGAATGTGCTTTGGAACAGGC +
Preference number: 6 (lower is better)
Translates to: TKLSPAPVVSTA*TASVGMCFGTG
Trigger: GCCTGTTCCAAAGCACATTCCCACTGAAGCTGTCAAGGCTGTAGACACCACGGGTGCTGGTGACAGTTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS GCA 72 bp CTATGTAATCATTGCCAAAAGAATCGTTGCCAACCTTaGAGACTATGGCCGCCTTTGCTCCCAGTCGCGCAG +
Preference number: 6 (lower is better)
Translates to: LCNHCQKNRCQP*RLWPPLLPVAQ
Trigger: CTGCGCGACTGGGAGCAAAGGCGGCCATAGTCTGCAAGGTTGGCAACGATTCTTTTGGCAATGATTACATAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS GCA 72 bp CTGCGTGGCCTGTTAAAATCTCAGCCTCGCTCTCGTTaGAGCAGAAAATACTGGAGAGGGTATAGAACTGGG +
Preference number: 6 (lower is better)
Translates to: LRGLLKSQPRSR*SRKYWRGYRTG
Trigger: CCCAGTTCTATACCCTCTCCAGTATTTTCTGCTGCAACGAGAGCGAGGCTGAGATTTTAACAGGCCACGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS CAA 72 bp GCTGCCGGGCTTATTTCTAGCTGGCATATCATCACTTaGGCTCGGCTAATGACACTGGCTGCCTTCTTCAAG +
Preference number: 6 (lower is better)
Translates to: AAGLISSWHIIT*ARLMTLAAFFK
Trigger: CTTGAAGAAGGCAGCCAGTGTCATTAGCCGAGCCAAAGTGATGATATGCCAGCTAGAAATAAGCCCGGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS GCA 72 bp ATAAGAGGACTGTGTTCCCGTGGCCTGTACACTGACTaGAGCGATGAAATTGGATCTCTTGAGCATTTCTTC +
Preference number: 6 (lower is better)
Translates to: IRGLCSRGLYTD*SDEIGSLEHFF
Trigger: GAAGAAATGCTCAAGAGATCCAATTTCATCGCTGCAGTCAGTGTACAGGCCACGGGAACACAGTCCTCTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS GCA 72 bp TTAAGTTTTCTATGTAATCATTGCCAAAAGAATCGTTaGCAACCTTGCAGACTATGGCCGCCTTTGCTCCCA +
Preference number: 6 (lower is better)
Translates to: LSFLCNHCQKNR*QPCRLWPPLLP
Trigger: TGGGAGCAAAGGCGGCCATAGTCTGCAAGGTTGGCAACGATTCTTTTGGCAATGATTACATAGAAAACTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10
CDS GCA 72 bp TTCATTATTGACAATTATGGAGGCTGTTCCTGTAGCTaGATCTCTGGTCTGATATGTAAACTCTGTAGAAAT +
Preference number: 6 (lower is better)
Translates to: FIIDNYGGCSCS*ISGLICKLCRN
Trigger: ATTTCTACAGAGTTTACATATCAGACCAGAGATGCAGCTACAGGAACAGCCTCCATAATTGTCAATAATGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031018.10