RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RBIS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078784

Ensembl transcript IDs: ENSMUST00000186870.7

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp ACTTATGTCGCAGCAGACCAAAACTCCTTGAATACAAACTACTACCCAGTTTCTAGATACGCTTTGGCATaGCTGTTGGAGATCCGGTCC +
Preference number: 2 (lower is better)
Translates to: TYVAADQNSLNTNYYPVSRYALA*LLEIRS
Trigger: GGACCGGATCTCCAACAGCCATGCCAAAGCGTATCT...AGAAACTGGGTAGTAGTTTGTATTCAAGGAGTTTTGGTCTGCTGCGACATAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186870.7
3UTR-3UTR GCA 90 bp ACTTATGTCGCAGCAGACCAAAACTCCTTGAATACAAACTACTACCCAGTTTCTGAGGCTGTATCTCTTTaGTTCCAGCAAGGCCTTAAT +
Preference number: 2 (lower is better)
Translates to: TYVAADQNSLNTNYYPVSEAVSL*FQQGLN
Trigger: ATTAAGGCCTTGCTGGAAGCAAAGAGATACAGCCTC...AGAAACTGGGTAGTAGTTTGTATTCAAGGAGTTTTGGTCTGCTGCGACATAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186870.7
3UTR-3UTR TCA 90 bp ACTTATGTCGCAGCAGACCAAAACTCCTTGAATACAAACTACTACCCAGTTTCTTATGTCCATAGCATGTaGCCAAGAACACAGACAATT +
Preference number: 2 (lower is better)
Translates to: TYVAADQNSLNTNYYPVSYVHSM*PRTQTI
Trigger: AATTGTCTGTGTTCTTGGTCACATGCTATGGACATA...AGAAACTGGGTAGTAGTTTGTATTCAAGGAGTTTTGGTCTGCTGCGACATAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186870.7
3UTR CCA 72 bp GATACGCTTTGGCATGGCTGTTGGAGATCCGGTCCATaGAGGCTGTATCTCTTTGCTTCCAGCAAGGCCTTA +
Preference number: 3 (lower is better)
Translates to: DTLWHGCWRSGP*RLYLFASSKAL
Trigger: TAAGGCCTTGCTGGAAGCAAAGAGATACAGCCTCCATGGACCGGATCTCCAACAGCCATGCCAAAGCGTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186870.7
3UTR GCA 72 bp CTGTTGGAGATCCGGTCCATGGAGGCTGTATCTCTTTaGTTCCAGCAAGGCCTTAATTCATCCTCAAGTGAC +
Preference number: 3 (lower is better)
Translates to: LLEIRSMEAVSL*FQQGLNSSSSD
Trigger: GTCACTTGAGGATGAATTAAGGCCTTGCTGGAAGCAAAGAGATACAGCCTCCATGGACCGGATCTCCAACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186870.7
3UTR GCA 72 bp TGTTGCACACCTGGAACATCTTGCATTATTGGGTACTaGAAACAGTATGTGAATAAGCTTGCGGGGTGTGGG +
Preference number: 3 (lower is better)
Translates to: CCTPGTSCIIGY*KQYVNKLAGCG
Trigger: CCCACACCCCGCAAGCTTATTCACATACTGTTTGCAGTACCCAATAATGCAAGATGTTCCAGGTGTGCAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186870.7
3UTR TCA 72 bp GAACATCTTGCATTATTGGGTACTGCAAACAGTATGTaGATAAGCTTGCGGGGTGTGGGGTCTCCTTCAGAA +
Preference number: 3 (lower is better)
Translates to: EHLALLGTANSM*ISLRGVGSPSE
Trigger: TTCTGAAGGAGACCCCACACCCCGCAAGCTTATTCACATACTGTTTGCAGTACCCAATAATGCAAGATGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186870.7
3UTR CCA 72 bp AACTTTTATGGAACATTCAGTAGATACGCTTTGGCATaGCTGTTGGAGATCCGGTCCATGGAGGCTGTATCT +
Preference number: 3 (lower is better)
Translates to: NFYGTFSRYALA*LLEIRSMEAVS
Trigger: AGATACAGCCTCCATGGACCGGATCTCCAACAGCCATGCCAAAGCGTATCTACTGAATGTTCCATAAAAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186870.7
3UTR TCA 72 bp AACAAAACACTTATGTCGCAGCAGACCAAAACTCCTTaGATACAAACTACTACCCAGTTTCTTTCATTCCTC +
Preference number: 3 (lower is better)
Translates to: NKTLMSQQTKTP*IQTTTQFLSFL
Trigger: GAGGAATGAAAGAAACTGGGTAGTAGTTTGTATTCAAGGAGTTTTGGTCTGCTGCGACATAAGTGTTTTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186870.7
3UTR TCA 72 bp CATCAGAATAGATGTTTTCTAGAAGGACTGGGACCCTaGAGAAATTTTTGTGGCAAACATTTCCATGAATTA +
Preference number: 3 (lower is better)
Translates to: HQNRCFLEGLGP*RNFCGKHFHEL
Trigger: TAATTCATGGAAATGTTTGCCACAAAAATTTCTTCAGGGTCCCAGTCCTTCTAGAAAACATCTATTCTGATG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186870.7
3UTR CAA 72 bp AAAAACAACTTTTATGGAACATTCAGTAGATACGCTTaGGCATGGCTGTTGGAGATCCGGTCCATGGAGGCT +
Preference number: 4 (lower is better)
Translates to: KNNFYGTFSRYA*AWLLEIRSMEA
Trigger: AGCCTCCATGGACCGGATCTCCAACAGCCATGCCAAAGCGTATCTACTGAATGTTCCATAAAAGTTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000186870.7
CDS-3UTR CAA 90 bp ACAATTTACACTTTAAAAAGAGTAATAGCCTTCAATGCCTCAGTCAGGAGAGCAGCCTTGTTTTTAGCCTaGAAAGTTTTGTGGCTAGCT +
Preference number: 5 (lower is better)
Translates to: TIYTLKRVIAFNASVRRAALFLA*KVLWLA
Trigger: AGCTAGCCACAAAACTTTCAAGGCTAAAAACAAGGC...TGCTCTCCTGACTGAGGCATTGAAGGCTATTACTCTTTTTAAAGTGTAAATTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000186870.7