RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RBFOX3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025576

Ensembl transcript IDs: ENSMUST00000017576.11, ENSMUST00000069343.12, ENSMUST00000103023.8, ENSMUST00000106278.9, ENSMUST00000117731.8, ENSMUST00000120061.8, ENSMUST00000136551.3, ENSMUST00000154746.8

Found 292 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCTGGCACTTCTGGAGCCCTGAGGGGCCGTGGTGCCCTGAGGCATaGGCATGGCCCTGGCAGGGCACCTTGCCGTCCCCCTGGCCTGGC +
Preference number: 1 (lower is better)
Translates to: AWHFWSPEGPWCPEA*AWPWQGTLPSPWPG
Trigger: GCCAGGCCAGGGGGACGGCAAGGTGCCCTGCCAGGGCCATGCCCATGCCTCAGGGCACCACGGCCCCTCAGGGCTCCAGAAGTGCCAGGC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR CCA 90 bp TGGAGCCCTGAGGGGCCGTGGTGCCCTGAGGCATGGGCATGGCCCTaGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATG +
Preference number: 1 (lower is better)
Translates to: WSPEGPWCPEAWAWP*QGTLPSPWPGSRCM
Trigger: CATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCTGCCAGGGCCATGCCCATGCCTCAGGGCACCACGGCCCCTCAGGGCTCCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR CCA 90 bp TGGCCAGACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTTaGCCTGGCACTTCTGGAGCCCTGAGGGGCCGTGGTGCCCTGAGG +
Preference number: 1 (lower is better)
Translates to: WPDLPELTEVALREA*PGTSGALRGRGALR
Trigger: CCTCAGGGCACCACGGCCCCTCAGGGCTCCAGAAGTGCCAGGCCAAGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTCTGGCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR GCA 90 bp CCGGCCTTCCCCGTGGCAGGGCCAGCCCAGACCTTCCCCATCCCTTaGCTTTCCCATGGGTCCTGTTCTGACTGCGGCCCTCCAGACCCA +
Preference number: 1 (lower is better)
Translates to: PAFPVAGPAQTFPIP*LSHGSCSDCGPPDP
Trigger: TGGGTCTGGAGGGCCGCAGTCAGAACAGGACCCATGGGAAAGGCAAGGGATGGGGAAGGTCTGGGCTGGCCCTGCCACGGGGAAGGCCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR GCA 90 bp TTTCCCGTGACTCCCACACTTTACCTGCCCAGGGAGCAAACGGGCTaGAGCCCAGCCGGCCTTCCCCGTGGCAGGGCCAGCCCAGACCTT +
Preference number: 1 (lower is better)
Translates to: FPVTPTLYLPREQTG*SPAGLPRGRASPDL
Trigger: AAGGTCTGGGCTGGCCCTGCCACGGGGAAGGCCGGCTGGGCTGCAGCCCGTTTGCTCCCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR TCA 90 bp CTGTCAGCCAGCAAACCCGGGATGGCCAGACCTGCCGGAGCTGACTaGGGTGGCTCTGAGGGAGGCTTGGCCTGGCACTTCTGGAGCCCT +
Preference number: 1 (lower is better)
Translates to: LSASKPGMARPAGAD*GGSEGGLAWHFWSP
Trigger: AGGGCTCCAGAAGTGCCAGGCCAAGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTCTGGCCATCCCGGGTTTGCTGGCTGACAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR CCA 90 bp GCATGGGGTGCCCCAGAGTTCTGGAGCCGTGTCAGCCCTTTGCATTaGGAGTTGGAACCCAGGGCGGCTGGTTGGATAGCTGACGGCACT +
Preference number: 1 (lower is better)
Translates to: AWGAPEFWSRVSPLH*ELEPRAAGWIADGT
Trigger: AGTGCCGTCAGCTATCCAACCAGCCGCCCTGGGTTCCAACTCCCAATGCAAAGGGCTGACACGGCTCCAGAACTCTGGGGCACCCCATGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 90 bp CCCTGTGCCCGAGGGCCCACCTGTCCACGTTCACAGCGTGAGGACTaGGTCCTCGCTGGCTGGGCTTTCTTTGTTCTTTGTAGCCGGAAG +
Preference number: 1 (lower is better)
Translates to: PCARGPTCPRSQRED*VLAGWAFFVLCSRK
Trigger: CTTCCGGCTACAAAGAACAAAGAAAGCCCAGCCAGCGAGGACCCAGTCCTCACGCTGTGAACGTGGACAGGTGGGCCCTCGGGCACAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 90 bp GACCCACAGCACCTTGACTCCCAACATCTAGGTGCAGCCCAGGGCTaGCCCGTCTCAATCCCCACTCCCCAGCAGAACGGAGCCTACAGA +
Preference number: 1 (lower is better)
Translates to: DPQHLDSQHLGAAQG*PVSIPTPQQNGAYR
Trigger: TCTGTAGGCTCCGTTCTGCTGGGGAGTGGGGATTGAGACGGGCCAGCCCTGGGCTGCACCTAGATGTTGGGAGTCAAGGTGCTGTGGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR TCA 90 bp TCTGTGAAAGGTGGGTGGAAGTCCCTCCCACTGGGAGGACCCCACTaGCTAGGCCTGGAACTCCTCTGTCAGCCAGCAAACCCGGGATGG +
Preference number: 1 (lower is better)
Translates to: SVKGGWKSLPLGGPH*LGLELLCQPANPGW
Trigger: CCATCCCGGGTTTGCTGGCTGACAGAGGAGTTCCAGGCCTAGTCAGTGGGGTCCTCCCAGTGGGAGGGACTTCCACCCACCTTTCACAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR GCA 90 bp TACAACAGAAACAGAAATGAGGGCTTGCGGTTTCCGAGCGTCGGCTaGAGCATGCAGGGCCACCGTGCTTGTGGTCTGGGGTCCGACCTG +
Preference number: 1 (lower is better)
Translates to: YNRNRNEGLRFPSVG*SMQGHRACGLGSDL
Trigger: CAGGTCGGACCCCAGACCACAAGCACGGTGGCCCTGCATGCTGCAGCCGACGCTCGGAAACCGCAAGCCCTCATTTCTGTTTCTGTTGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR CCA 90 bp GCCCCCTGGGGGACGAGCTCCCTCGATGCGGGTGTACGCCAGACGTaGACTTGGACTTGGTTGGATGCCTCTTGGTTTGGTTGGTATTTG +
Preference number: 1 (lower is better)
Translates to: APWGTSSLDAGVRQT*TWTWLDASWFGWYL
Trigger: CAAATACCAACCAAACCAAGAGGCATCCAACCAAGTCCAAGTCCACGTCTGGCGTACACCCGCATCGAGGGAGCTCGTCCCCCAGGGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 90 bp GCCTTGCCCAGGGGCTTCTTGATACCTCTTCCCTGTTCCATCCACTaGGCCTGCTGCTTTCCCGTGACTCCCACACTTTACCTGCCCAGG +
Preference number: 1 (lower is better)
Translates to: ALPRGFLIPLPCSIH*ACCFPVTPTLYLPR
Trigger: CCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAAGAAGCCCCTGGGCAAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR TCA 90 bp CCCTTTGCATTGGGAGTTGGAACCCAGGGCGGCTGGTTGGATAGCTaGCGGCACTGGCAGCAACATTCAATGAGGCCAGGCTGCAGACCT +
Preference number: 1 (lower is better)
Translates to: PFALGVGTQGGWLDS*RHWQQHSMRPGCRP
Trigger: AGGTCTGCAGCCTGGCCTCATTGAATGTTGCTGCCAGTGCCGTCAGCTATCCAACCAGCCGCCCTGGGTTCCAACTCCCAATGCAAAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR GCA 90 bp CCCAGGGGCTTCTTGATACCTCTTCCCTGTTCCATCCACTGGGCCTaGTGCTTTCCCGTGACTCCCACACTTTACCTGCCCAGGGAGCAA +
Preference number: 1 (lower is better)
Translates to: PRGFLIPLPCSIHWA*CFPVTPTLYLPREQ
Trigger: TTGCTCCCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAAGAAGCCCCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 90 bp AATGGTCACACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTaGGGCTCGGCTGCAGTCCTGGGAGGGGCTGCGGGAAAAGGGTCC +
Preference number: 1 (lower is better)
Translates to: NGHTVEAYRMVRKEA*GSAAVLGGAAGKGS
Trigger: GGACCCTTTTCCCGCAGCCCCTCCCAGGACTGCAGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGTGTGACCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR GCA 90 bp CTTTGTAGCCGGAAGCTTTCTCACATAGGGGAGCGGAGCATGGGGTaGCCCAGAGTTCTGGAGCCGTGTCAGCCCTTTGCATTGGGAGTT +
Preference number: 1 (lower is better)
Translates to: LCSRKLSHIGERSMG*PRVLEPCQPFALGV
Trigger: AACTCCCAATGCAAAGGGCTGACACGGCTCCAGAACTCTGGGGCACCCCATGCTCCGCTCCCCTATGTGAGAAAGCTTCCGGCTACAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR GCA 90 bp AGGGGCTTCTTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTaGTTTCCCGTGACTCCCACACTTTACCTGCCCAGGGAGCAAACG +
Preference number: 1 (lower is better)
Translates to: RGFLIPLPCSIHWAC*FPVTPTLYLPREQT
Trigger: CGTTTGCTCCCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAAGAAGCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 90 bp GTCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTaGGTGGAAGTCCCTCCCACTGGGAGGACCCCACTGACTAGGCCT +
Preference number: 1 (lower is better)
Translates to: VQRGHAVTLDSLCER*VEVPPTGRTPLTRP
Trigger: AGGCCTAGTCAGTGGGGTCCTCCCAGTGGGAGGGACTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR TCA 90 bp CTGCAGGGAGACCAGAGGAAGGAAGGTGATACTGTGTCCCAGGCCTaGCTACTGGAACCCTGGCCTTTCCTGGTATGGACCGCTACAAAA +
Preference number: 1 (lower is better)
Translates to: LQGDQRKEGDTVSQA*LLEPWPFLVWTATK
Trigger: TTTTGTAGCGGTCCATACCAGGAAAGGCCAGGGTTCCAGTAGTCAGGCCTGGGACACAGTATCACCTTCCTTCCTCTGGTCTCCCTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR CCA 90 bp GAACCCTGGCCTTTCCTGGTATGGACCGCTACAAAAGGGGATGGGTaGGGTGGCTCTGTAGGTCAAGAACAAATGGTCCCAGAGCCATCA +
Preference number: 1 (lower is better)
Translates to: EPWPFLVWTATKGDG*GGSVGQEQMVPEPS
Trigger: TGATGGCTCTGGGACCATTTGTTCTTGACCTACAGAGCCACCCCACCCATCCCCTTTTGTAGCGGTCCATACCAGGAAAGGCCAGGGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR CCA 90 bp GAGACCAGAGGAAGGAAGGTGATACTGTGTCCCAGGCCTGACTACTaGAACCCTGGCCTTTCCTGGTATGGACCGCTACAAAAGGGGATG +
Preference number: 1 (lower is better)
Translates to: ETRGRKVILCPRPDY*NPGLSWYGPLQKGM
Trigger: CATCCCCTTTTGTAGCGGTCCATACCAGGAAAGGCCAGGGTTCCAGTAGTCAGGCCTGGGACACAGTATCACCTTCCTTCCTCTGGTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR CCA 90 bp CACTGTCCTCCGGGCGGTTGTGCCTGGTGTTGGGACTGTAGGGTTTaGTTTGGAATAAGCTGTAGTGTGAATGCTGTGAGGGGGTCTCTT +
Preference number: 1 (lower is better)
Translates to: HCPPGGCAWCWDCRV*FGISCSVNAVRGSL
Trigger: AAGAGACCCCCTCACAGCATTCACACTACAGCTTATTCCAAACCAAACCCTACAGTCCCAACACCAGGCACAACCGCCCGGAGGACAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR TCA 90 bp ACAGGAAGATGGTTAGTAAACTTTAATAGAAACGATAACTTCGGCTaGGTGGAAGTCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTC +
Preference number: 1 (lower is better)
Translates to: TGRWLVNFNRNDNFG*VEVQRGHAVTLDSL
Trigger: GAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGACTTCCACTCAGCCGAAGTTATCGTTTCTATTAAAGTTTACTAACCATCTTCCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR CCA 90 bp CCTGAGGCATGGGCATGGCCCTGGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCCCAGCATGGGTGGGGTaGGGAGACCAGCTGGCTGGA +
Preference number: 2 (lower is better)
Translates to: PEAWAWPWQGTLPSPWPGPAWVG*GDQLAG
Trigger: TCCAGCCAGCTGGTCTCCCCACCCCACCCATGCTGG...GCCAGGCCAGGGGGACGGCAAGGTGCCCTGCCAGGGCCATGCCCATGCCTCAGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR CCA 90 bp CCTGGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGTCGCTGGTCGCTGACTaGGAGGGGCGCACTGTCCTC +
Preference number: 2 (lower is better)
Translates to: PGRAPCRPPGLAPAVCIPSLVAD*EGRTVL
Trigger: GAGGACAGTGCGCCCCTCCCAGTCAGCGACCAGCGA...CGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCTGCCAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR CCA 90 bp TGGCCAGACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTTGGCCTGGCGCCGTCCCCCTGGCCTaGCTCCCGCTGTATGCATAC +
Preference number: 2 (lower is better)
Translates to: WPDLPELTEVALREAWPGAVPLA*LPLYAY
Trigger: GTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGC...GCCAGGCCAAGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTCTGGCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR CCA 90 bp GGAAAAGGGTCCGAAACAGCAGAAGGCAAGGGGCTCCGTACAGAGGACAGAGCCCCGCCCCACACCCACTaGCCACGTTCCCCCTCCAGG +
Preference number: 2 (lower is better)
Translates to: GKGSETAEGKGLRTEDRAPPHTH*PRSPSR
Trigger: CCTGGAGGGGGAACGTGGCCAGTGGGTGTGGGGCGG...GGCTCTGTCCTCTGTACGGAGCCCCTTGCCTTCTGCTGTTTCGGACCCTTTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp ACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACTCCCACACTAGCCGGCCTTCCCCGTaGCAGGGCCAGCCCAGACCT +
Preference number: 2 (lower is better)
Translates to: TSSLFHPLGLLLSRDSHTSRPSP*QGQPRP
Trigger: AGGTCTGGGCTGGCCCTGCCACGGGGAAGGCCGGCT...AGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CAA 90 bp GGTGCCCCAGAGTTCTGGAGCCGTGTCAGCCCTTTGCATTGGGAGTaGGAACCCAGGGCGGCTGGTTGGATAGCTGACGGCACTGGCAGC +
Preference number: 2 (lower is better)
Translates to: GAPEFWSRVSPLHWE*EPRAAGWIADGTGS
Trigger: GCTGCCAGTGCCGTCAGCTATCCAACCAGCCGCCCTGGGTTCCAACTCCCAATGCAAAGGGCTGACACGGCTCCAGAACTCTGGGGCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR TCA 90 bp GGCCCACCTGTCCACGTTCACAGCGTGAGGACTGGGTCCTCGCTGGCTGGGCTTGGCTGGTTGGATAGCTaGCGGCACTGGCAGCAACAT +
Preference number: 2 (lower is better)
Translates to: GPPVHVHSVRTGSSLAGLGWLDS*RHWQQH
Trigger: ATGTTGCTGCCAGTGCCGTCAGCTATCCAACCAGCC...AAGCCCAGCCAGCGAGGACCCAGTCCTCACGCTGTGAACGTGGACAGGTGGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp CTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCGGACTTGGACTTGGTTaGATGCCTCTTGGTTTGGTT +
Preference number: 2 (lower is better)
Translates to: LAASPLHRQPGKATLRRPGLGLG*MPLGLV
Trigger: AACCAAACCAAGAGGCATCCAACCAAGTCCAAGTCC...GGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR GCA 90 bp CTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCTTGGACTTGGTTGGATaGCTCTTGGTTTGGTTGGTA +
Preference number: 2 (lower is better)
Translates to: LAASPLHRQPGKATLRRPLDLVG*LLVWLV
Trigger: TACCAACCAAACCAAGAGGCATCCAACCAAGTCCAA...GGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp CCTGGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGGGTTGTGCCTGGTGTTaGGACTGTAGGGTTTGGTTT +
Preference number: 2 (lower is better)
Translates to: PGRAPCRPPGLAPAVCIPGCAWC*DCRVWF
Trigger: AAACCAAACCCTACAGTCCCAACACCAGGCACAACC...CGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCTGCCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR CCA 90 bp CCTGGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGGGTGGGGAGACCAGCTaGCTGGAGGTAAAAATCTAT +
Preference number: 2 (lower is better)
Translates to: PGRAPCRPPGLAPAVCIPGGETS*LEVKIY
Trigger: ATAGATTTTTACCTCCAGCCAGCTGGTCTCCCCACC...CGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCTGCCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR CCA 90 bp TGGGGCAGGGACATTTCCGTGTCTGTAAGGAATCCCAGAGCCAGGGTGGCCACGGAGGGAGGCTTGGCCTaGCACTTCTGGAGCCCTGAG +
Preference number: 2 (lower is better)
Translates to: WGRDISVSVRNPRARVATEGGLA*HFWSPE
Trigger: CTCAGGGCTCCAGAAGTGCCAGGCCAAGCCTCCCTC...CGTGGCCACCCTGGCTCTGGGATTCCTTACAGACACGGAAATGTCCCTGCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR CCA 90 bp CTGGGCCTGCTGCTTTCCCGTGACTCCCACACTTTACCTGCCCAGGGAGCAAACGTCTTCCCCAGTGTCTaGCCGCGTCCCCACTACACC +
Preference number: 2 (lower is better)
Translates to: LGLLLSRDSHTLPAQGANVFPSV*PRPHYT
Trigger: GGTGTAGTGGGGACGCGGCCAGACACTGGGGAAGAC...GTTTGCTCCCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp CTTCTTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACCCGCCCCACACCCACTaGCCACGTTCCCCCTCCAGG +
Preference number: 2 (lower is better)
Translates to: LLDTSSLFHPLGLLLSRDPPHTH*PRSPSR
Trigger: CCTGGAGGGGGAACGTGGCCAGTGGGTGTGGGGCGG...GTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAAGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR GCA 90 bp GGCCCACCTGTCCACGTTCACAGCGTGAGGACTGGGTCCTCGCTGGCTGGGCTTTCAATGAGGCCAGGCTaGAGACCTGGGATGAGTGAT +
Preference number: 2 (lower is better)
Translates to: GPPVHVHSVRTGSSLAGLSMRPG*RPGMSD
Trigger: ATCACTCATCCCAGGTCTGCAGCCTGGCCTCATTGA...AAGCCCAGCCAGCGAGGACCCAGTCCTCACGCTGTGAACGTGGACAGGTGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR GCA 90 bp ACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACTCCCACACTCTCCCAACATCTAGGTaGAGCCCAGGGCTGGCCCGT +
Preference number: 2 (lower is better)
Translates to: TSSLFHPLGLLLSRDSHTLPTSR*SPGLAR
Trigger: ACGGGCCAGCCCTGGGCTGCACCTAGATGTTGGGAG...AGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp CACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCCTGGGGGACGAGCTCCCTTGGTTGGATGCCTCTTaGTTTGGTTGGTATTTGTTG +
Preference number: 2 (lower is better)
Translates to: HRQPGKATLRRPLGDELPWLDAS*FGWYLL
Trigger: CAACAAATACCAACCAAACCAAGAGGCATCCAACCA...AGGGAGCTCGTCCCCCAGGGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp GGCCCACCTGTCCACGTTCACAGCGTGAGGACTGGGTCCTCGCTGGCTGGGCTTGGTGTACGCCAGACGTaGACTTGGACTTGGTTGGAT +
Preference number: 2 (lower is better)
Translates to: GPPVHVHSVRTGSSLAGLGVRQT*TWTWLD
Trigger: ATCCAACCAAGTCCAAGTCCACGTCTGGCGTACACC...AAGCCCAGCCAGCGAGGACCCAGTCCTCACGCTGTGAACGTGGACAGGTGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR TCA 90 bp TACAACAGAAACAGAAATGAGGGCTTGCGGTTTCCGAGCGTCGGCTGCAGCATGCCTGCCGGAGCTGACTaGGGTGGCTCTGAGGGAGGC +
Preference number: 2 (lower is better)
Translates to: YNRNRNEGLRFPSVGCSMPAGAD*GGSEGG
Trigger: GCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGG...CATGCTGCAGCCGACGCTCGGAAACCGCAAGCCCTCATTTCTGTTTCTGTTGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR CCA 90 bp TTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACTCCCGTCTTCCCCAGTGTCTaGCCGCGTCCCCACTACACC +
Preference number: 2 (lower is better)
Translates to: LIPLPCSIHWACCFPVTPVFPSV*PRPHYT
Trigger: GGTGTAGTGGGGACGCGGCCAGACACTGGGGAAGAC...GGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp GGAAAAGGGTCCGAAACAGCAGAAGGCAAGGGGCTCCGTACAGAGGACAGAGCCGGTGTCATGAGACAGTaGTGCCGCGTCGGGAGCCTT +
Preference number: 2 (lower is better)
Translates to: GKGSETAEGKGLRTEDRAGVMRQ*CRVGSL
Trigger: AAGGCTCCCGACGCGGCACCACTGTCTCATGACACC...GGCTCTGTCCTCTGTACGGAGCCCCTTGCCTTCTGCTGTTTCGGACCCTTTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR TCA 90 bp ACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACTCCCACACTGGCAGCAACATTCAATaGGGCCAGGCTGCAGACCTG +
Preference number: 2 (lower is better)
Translates to: TSSLFHPLGLLLSRDSHTGSNIQ*GQAADL
Trigger: CAGGTCTGCAGCCTGGCCTCATTGAATGTTGCTGCC...AGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR GCA 90 bp GCGGGAAAAGGGTCCGAAACAGCAGAAGGCAAGGGGCTCCGTACAGAGGACAGACTCCCACACTTTACCTaGCCAGGGAGCAAACGGGCT +
Preference number: 2 (lower is better)
Translates to: AGKGSETAEGKGLRTEDRLPHFT*PGSKRA
Trigger: AGCCCGTTTGCTCCCTGGGCAGGTAAAGTGTGGGAG...TCTGTCCTCTGTACGGAGCCCCTTGCCTTCTGCTGTTTCGGACCCTTTTCCCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp TACAACAGAAACAGAAATGAGGGCTTGCGGTTTCCGAGCGTCGGCTGCAGCATGTCGCTGGTCGCTGACTaGGAGGGGCGCACTGTCCTC +
Preference number: 2 (lower is better)
Translates to: YNRNRNEGLRFPSVGCSMSLVAD*EGRTVL
Trigger: GAGGACAGTGCGCCCCTCCCAGTCAGCGACCAGCGA...CATGCTGCAGCCGACGCTCGGAAACCGCAAGCCCTCATTTCTGTTTCTGTTGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR CCA 90 bp GGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGTCCCTCCCACCAGCATGGGTGGGGTaGGGAGACCAGCTGGCTGGA +
Preference number: 2 (lower is better)
Translates to: GMQLLLTVSVKGGWKSLPPAWVG*GDQLAG
Trigger: TCCAGCCAGCTGGTCTCCCCACCCCACCCATGCTGG...TGGGAGGGACTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR CCA 90 bp GGAAAAGGGTCCGAAACAGCAGAAGGCAAGGGGCTCCGTACAGAGGACAGAGCCGCCTACAGAAGGGAGTaGAAAGGAGGGCTGGGTCCT +
Preference number: 2 (lower is better)
Translates to: GKGSETAEGKGLRTEDRAAYRRE*KGGLGP
Trigger: AGGACCCAGCCCTCCTTTCCACTCCCTTCTGTAGGC...GGCTCTGTCCTCTGTACGGAGCCCCTTGCCTTCTGCTGTTTCGGACCCTTTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CAA 90 bp GCTGTTAACCCTACTCCACCTATCCCTGCCTTGCCCAGGGGCTTCTaGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCC +
Preference number: 2 (lower is better)
Translates to: AVNPTPPIPALPRGF*IPLPCSIHWACCFP
Trigger: GGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAAGAAGCCCCTGGGCAAGGCAGGGATAGGTGGAGTAGGGTTAACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR TCA 90 bp TTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACTCCCGGCAGCAACATTCAATaGGGCCAGGCTGCAGACCTG +
Preference number: 2 (lower is better)
Translates to: LIPLPCSIHWACCFPVTPGSNIQ*GQAADL
Trigger: CAGGTCTGCAGCCTGGCCTCATTGAATGTTGCTGCC...GGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp TCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGACCTTGCCGTCCCCCTaGCCTGGCTCCCGCTGTATG +
Preference number: 2 (lower is better)
Translates to: SREGMQLLLTVSVKGGWKTLPSP*PGSRCM
Trigger: CATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGT...CTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR CCA 90 bp TGGAAGTCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGCCTGAGGCATGGGCATaGCCCTGGCAGGGCACCTTG +
Preference number: 2 (lower is better)
Translates to: WKSREGMQLLLTVSVKGGPEAWA*PWQGTL
Trigger: CAAGGTGCCCTGCCAGGGCCATGCCCATGCCTCAGG...CCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGACTTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR CCA 90 bp TTTCCCATGGGTCCTGTTCTGACTGCGGCCCTCCAGACCCACAGCACCTTGACTGTGGGAAAGGAAGACTaGATAGATACCGGAGCCCCC +
Preference number: 2 (lower is better)
Translates to: FPMGPVLTAALQTHSTLTVGKED*IDTGAP
Trigger: GGGGGCTCCGGTATCTATCCAGTCTTCCTTTCCCAC...AGTCAAGGTGCTGTGGGTCTGGAGGGCCGCAGTCAGAACAGGACCCATGGGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp GGTCACACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTGGGGCTCGGCTGGTGCCCCAGAGTTCTaGAGCCGTGTCAGCCCTTTG +
Preference number: 2 (lower is better)
Translates to: GHTVEAYRMVRKEAWGSAGAPEF*SRVSPL
Trigger: CAAAGGGCTGACACGGCTCCAGAACTCTGGGGCACC...AGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGTGTGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp CTTCTTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACGGTGCCCCAGAGTTCTaGAGCCGTGTCAGCCCTTTG +
Preference number: 2 (lower is better)
Translates to: LLDTSSLFHPLGLLLSRDGAPEF*SRVSPL
Trigger: CAAAGGGCTGACACGGCTCCAGAACTCTGGGGCACC...GTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp TTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACTCCCGCCTACAGAAGGGAGTaGAAAGGAGGGCTGGGTCCT +
Preference number: 2 (lower is better)
Translates to: LIPLPCSIHWACCFPVTPAYRRE*KGGLGP
Trigger: AGGACCCAGCCCTCCTTTCCACTCCCTTCTGTAGGC...GGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR TCA 90 bp GGAAAAGGGTCCGAAACAGCAGAAGGCAAGGGGCTCCGTACAGAGGACAGAGCCTATTTTGAGGTGTCATaGGACAGTGGTGCCGCGTCG +
Preference number: 2 (lower is better)
Translates to: GKGSETAEGKGLRTEDRAYFEVS*DSGAAS
Trigger: CGACGCGGCACCACTGTCTCATGACACCTCAAAATA...GGCTCTGTCCTCTGTACGGAGCCCCTTGCCTTCTGCTGTTTCGGACCCTTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR GCA 90 bp TTTCCCATGGGTCCTGTTCTGACTGCGGCCCTCCAGACCCACAGCACCTTGACTTCAATGAGGCCAGGCTaGAGACCTGGGATGAGTGAT +
Preference number: 2 (lower is better)
Translates to: FPMGPVLTAALQTHSTLTSMRPG*RPGMSD
Trigger: ATCACTCATCCCAGGTCTGCAGCCTGGCCTCATTGA...AGTCAAGGTGCTGTGGGTCTGGAGGGCCGCAGTCAGAACAGGACCCATGGGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR GCA 90 bp TTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACTCCCACCTTCCCCATCCCTTaGCTTTCCCATGGGTCCTGT +
Preference number: 2 (lower is better)
Translates to: LIPLPCSIHWACCFPVTPTFPIP*LSHGSC
Trigger: ACAGGACCCATGGGAAAGGCAAGGGATGGGGAAGGT...GGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp TCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGGAGGGAGGCTTGGCCTaGCACTTCTGGAGCCCTGAG +
Preference number: 2 (lower is better)
Translates to: SREGMQLLLTVSVKGGWKEGGLA*HFWSPE
Trigger: CTCAGGGCTCCAGAAGTGCCAGGCCAAGCCTCCCTC...CTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR GCA 90 bp GGGTGGGGTGGCTCTGTAGGTCAAGAACAAATGGTCCCAGAGCCATCAGCTCCATGGCCACGGCAGTATTaGACACAGAACAGTGTGCTG +
Preference number: 2 (lower is better)
Translates to: GWGGSVGQEQMVPEPSAPWPRQY*TQNSVL
Trigger: CAGCACACTGTTCTGTGTGCAATACTGCCGTGGCCA...TGGAGCTGATGGCTCTGGGACCATTTGTTCTTGACCTACAGAGCCACCCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR GCA 90 bp CTTCTTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACGCCGTGTCAGCCCTTTaGATTGGGAGTTGGAACCCA +
Preference number: 2 (lower is better)
Translates to: LLDTSSLFHPLGLLLSRDAVSAL*IGSWNP
Trigger: TGGGTTCCAACTCCCAATGCAAAGGGCTGACACGGC...GTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp AACCCGGGATGGCCAGACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTGGAGGTAAAAATCTATaGACTTTAGAGTCGCAGAGA +
Preference number: 2 (lower is better)
Translates to: NPGWPDLPELTEVALREAGGKNL*TLESQR
Trigger: TCTCTGCGACTCTAAAGTCCATAGATTTTTACCTCC...AGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTCTGGCCATCCCGGGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR CAA 90 bp TCCGTGTCTGTAAGGAATCCCAGAGCCAGGGTGGCCACGGCAGTATaGCACACAGAACAGTGTGCTGTGACTACTTGGACAGGAAGATGG +
Preference number: 2 (lower is better)
Translates to: SVSVRNPRARVATAV*HTEQCAVTTWTGRW
Trigger: CCATCTTCCTGTCCAAGTAGTCACAGCACACTGTTCTGTGTGCAATACTGCCGTGGCCACCCTGGCTCTGGGATTCCTTACAGACACGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR GCA 90 bp TCAGGAATAGAAAAGGAGGGTTCCGTTTCCATAGCTTCTGTGGCTGATGCTGGACTCCCAACATCTAGGTaGAGCCCAGGGCTGGCCCGT +
Preference number: 2 (lower is better)
Translates to: SGIEKEGSVSIASVADAGLPTSR*SPGLAR
Trigger: ACGGGCCAGCCCTGGGCTGCACCTAGATGTTGGGAG...TCCAGCATCAGCCACAGAAGCTATGGAAACGGAACCCTCCTTTTCTATTCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp GGTGGTCAGGCTCAGGGAGGGTCTCTAGGTCCACAGGCAATACAGGGTAACCTTGGTGGGGAGACCAGCTaGCTGGAGGTAAAAATCTAT +
Preference number: 2 (lower is better)
Translates to: GGQAQGGSLGPQAIQGNLGGETS*LEVKIY
Trigger: ATAGATTTTTACCTCCAGCCAGCTGGTCTCCCCACC...AAGGTTACCCTGTATTGCCTGTGGACCTAGAGACCCTCCCTGAGCCTGACCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR CAA 90 bp ATAACTTCGGCTGAGTGGAAGTCCAGAGAGGGCATGCAGTTACTCTaGACAGTCTCTGTGAAAGGTGGGTGGAAGTCCCTCCCACTGGGA +
Preference number: 2 (lower is better)
Translates to: ITSAEWKSREGMQLL*TVSVKGGWKSLPLG
Trigger: TCCCAGTGGGAGGGACTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGACTTCCACTCAGCCGAAGTTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR CCA 90 bp GCCCTTCATGGTCCGAGAAGGAGACGGTGGAAGGTTTCACTACAACAGAAACAGATGCTAACTGAGGCTTaGGTGGCTGCAGGGAGACCA +
Preference number: 2 (lower is better)
Translates to: ALHGPRRRRWKVSLQQKQMLTEA*VAAGRP
Trigger: TGGTCTCCCTGCAGCCACCCAAGCCTCAGTTAGCAT...CTGTTTCTGTTGTAGTGAAACCTTCCACCGTCTCCTTCTCGGACCATGAAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR TCA 90 bp TTAACATCTGCTAGTTCTCTAGGCTTTCAGCCTGACTTCAGGGACTCTAGGCAGCACACACATGCTAACTaGGGCTTGGGTGGCTGCAGG +
Preference number: 2 (lower is better)
Translates to: LTSASSLGFQPDFRDSRQHTHAN*GLGGCR
Trigger: CCTGCAGCCACCCAAGCCTCAGTTAGCATGTGTGTG...CTGCCTAGAGTCCCTGAAGTCAGGCTGAAAGCCTAGAGAACTAGCAGATGTTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR CCA 90 bp GGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGTCCCTCCCAGGTTGTGCCTGGTGTTaGGACTGTAGGGTTTGGTTT +
Preference number: 2 (lower is better)
Translates to: GMQLLLTVSVKGGWKSLPGCAWC*DCRVWF
Trigger: AAACCAAACCCTACAGTCCCAACACCAGGCACAACC...TGGGAGGGACTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR CCA 90 bp ACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTGGGGCTCGGCTGCAGTCGGACTTGGACTTGGTTaGATGCCTCTTGGTTTGGTT +
Preference number: 2 (lower is better)
Translates to: TVEAYRMVRKEAWGSAAVGLGLG*MPLGLV
Trigger: AACCAAACCAAGAGGCATCCAACCAAGTCCAAGTCC...GACTGCAGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR GCA 90 bp ACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTGGGGCTCGGCTGCAGTCTTGGACTTGGTTGGATaGCTCTTGGTTTGGTTGGTA +
Preference number: 2 (lower is better)
Translates to: TVEAYRMVRKEAWGSAAVLDLVG*LLVWLV
Trigger: TACCAACCAAACCAAGAGGCATCCAACCAAGTCCAA...GACTGCAGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR GCA 90 bp TCAGGAATAGAAAAGGAGGGTTCCGTTTCCATAGCTTCTGTGGCTGATGCTGGAGCCGTGTCAGCCCTTTaGATTGGGAGTTGGAACCCA +
Preference number: 2 (lower is better)
Translates to: SGIEKEGSVSIASVADAGAVSAL*IGSWNP
Trigger: TGGGTTCCAACTCCCAATGCAAAGGGCTGACACGGC...TCCAGCATCAGCCACAGAAGCTATGGAAACGGAACCCTCCTTTTCTATTCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR GCA 90 bp TCAGGAATAGAAAAGGAGGGTTCCGTTTCCATAGCTTCTGTGGCTGATGCTGGAACCTTCCCCATCCCTTaGCTTTCCCATGGGTCCTGT +
Preference number: 2 (lower is better)
Translates to: SGIEKEGSVSIASVADAGTFPIP*LSHGSC
Trigger: ACAGGACCCATGGGAAAGGCAAGGGATGGGGAAGGT...TCCAGCATCAGCCACAGAAGCTATGGAAACGGAACCCTCCTTTTCTATTCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp TTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACTCCCTGGTTGGATGCCTCTTaGTTTGGTTGGTATTTGTTG +
Preference number: 2 (lower is better)
Translates to: LIPLPCSIHWACCFPVTPWLDAS*FGWYLL
Trigger: CAACAAATACCAACCAAACCAAGAGGCATCCAACCA...GGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp GAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGTCCCTCTGGGACTGTAGGGTTTaGTTTGGAATAAGCTGTAGT +
Preference number: 2 (lower is better)
Translates to: EGMQLLLTVSVKGGWKSLWDCRV*FGISCS
Trigger: ACTACAGCTTATTCCAAACCAAACCCTACAGTCCCA...GAGGGACTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR CCA 90 bp GAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGTCCCTCGGAGGTAAAAATCTATaGACTTTAGAGTCGCAGAGA +
Preference number: 2 (lower is better)
Translates to: EGMQLLLTVSVKGGWKSLGGKNL*TLESQR
Trigger: TCTCTGCGACTCTAAAGTCCATAGATTTTTACCTCC...GAGGGACTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR-3UTR CCA 90 bp AATAATACTGTTAATTTGAATGGTCACACCGTGGAAGCATACAGAATGGTAAGAGCTCGGCTGCAGTCCTaGGAGGGGCTGCGGGAAAAG +
Preference number: 2 (lower is better)
Translates to: NNTVNLNGHTVEAYRMVRARLQS*EGLREK
Trigger: CTTTTCCCGCAGCCCCTCCCAGGACTGCAGCCGAGC...TCTTACCATTCTGTATGCTTCCACGGTGTGACCATTCAAATTAACAGTATTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CAA 90 bp ACGCCAGACGTGGACTTGGACTTGGTTGGATGCCTCTTGGTTTGGTaGGTATTTGTTGTTGTTGCTGTTGTTGCTTGGATCTTAACATCT +
Preference number: 2 (lower is better)
Translates to: TPDVDLDLVGCLLVW*VFVVVAVVAWILTS
Trigger: AGATGTTAAGATCCAAGCAACAACAGCAACAACAACAAATACCAACCAAACCAAGAGGCATCCAACCAAGTCCAAGTCCACGTCTGGCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CCA 90 bp AATAATACTGTTAATTTGAATGGTCACACCGTGGAAGCATACAGAATGGTAAGAGGTGTACGCCAGACGTaGACTTGGACTTGGTTGGAT +
Preference number: 2 (lower is better)
Translates to: NNTVNLNGHTVEAYRMVRGVRQT*TWTWLD
Trigger: ATCCAACCAAGTCCAAGTCCACGTCTGGCGTACACC...TCTTACCATTCTGTATGCTTCCACGGTGTGACCATTCAAATTAACAGTATTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 72 bp ACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCCTaGGGGACGAGCTCCCTCGATGCGGGTGTACGCCAG +
Preference number: 3 (lower is better)
Translates to: TASQAKPLSGAP*GTSSLDAGVRQ
Trigger: CTGGCGTACACCCGCATCGAGGGAGCTCGTCCCCCAGGGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 72 bp ATGGCCCTGGCAGGGCACCTTGCCGTCCCCCTGGCCTaGCTCCCGCTGTATGCATACCGTACCTGGAGTGGC +
Preference number: 3 (lower is better)
Translates to: MALAGHLAVPLA*LPLYAYRTWSG
Trigger: GCCACTCCAGGTACGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCTGCCAGGGCCAT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR GCA 72 bp TGGCCTTCAAGCCCACGGAGCCTCCTTCAGGGAGGCTaGCACGACAAACAACCCTGTGCCCGAGGGCCCACC +
Preference number: 3 (lower is better)
Translates to: WPSSPRSLLQGG*HDKQPCARGPT
Trigger: GGTGGGCCCTCGGGCACAGGGTTGTTTGTCGTGGCAGCCTCCCTGAAGGAGGCTCCGTGGGCTTGAAGGCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 72 bp CCCTTCAGGGCTCAGCAGGCAATAGCCCAAGTCAGCTaGCCGCTCCTTCTCAGGGGCCTGGTCCACCCTAGG +
Preference number: 3 (lower is better)
Translates to: PFRAQQAIAQVS*PLLLRGLVHPR
Trigger: CCTAGGGTGGACCAGGCCCCTGAGAAGGAGCGGCCAGCTGACTTGGGCTATTGCCTGCTGAGCCCTGAAGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CAA 90 bp TGGGTGGAAGTCCCTCCCACTGGGAGGACCCCACTGACTAGGCCTGGAACTCCTGGCTCTGAGGGAGGCTaGGCCTGGCACTTCTGGAGC +
Preference number: 3 (lower is better)
Translates to: WVEVPPTGRTPLTRPGTPGSEGG*AWHFWS
Trigger: GCTCCAGAAGTGCCAGGCCAAGCCTCCCTCAGAGCC...AGGAGTTCCAGGCCTAGTCAGTGGGGTCCTCCCAGTGGGAGGGACTTCCACCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR TCA 72 bp TGCAGGGCCACCGTGCTTGTGGTCTGGGGTCCGACCTaGAGCCACACTTCCCCTAAACCTGCCCTGAGGCCA +
Preference number: 3 (lower is better)
Translates to: CRATVLVVWGPT*SHTSPKPALRP
Trigger: TGGCCTCAGGGCAGGTTTAGGGGAAGTGTGGCTTCAGGTCGGACCCCAGACCACAAGCACGGTGGCCCTGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR GCA 72 bp GGGGTGCCCCAGAGTTCTGGAGCCGTGTCAGCCCTTTaGATTGGGAGTTGGAACCCAGGGCGGCTGGTTGGA +
Preference number: 3 (lower is better)
Translates to: GVPQSSGAVSAL*IGSWNPGRLVG
Trigger: TCCAACCAGCCGCCCTGGGTTCCAACTCCCAATGCAAAGGGCTGACACGGCTCCAGAACTCTGGGGCACCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR TCA 72 bp GGTGGGTGGAAGTCCCTCCCACTGGGAGGACCCCACTaGCTAGGCCTGGAACTCCTCTGTCAGCCAGCAAAC +
Preference number: 3 (lower is better)
Translates to: GGWKSLPLGGPH*LGLELLCQPAN
Trigger: GTTTGCTGGCTGACAGAGGAGTTCCAGGCCTAGTCAGTGGGGTCCTCCCAGTGGGAGGGACTTCCACCCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR GCA 72 bp GCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATaGATACCGTACCTGGAGTGGCTCGTACAACAACGT +
Preference number: 3 (lower is better)
Translates to: APCRPPGLAPAV*IPYLEWLVQQR
Trigger: ACGTTGTTGTACGAGCCACTCCAGGTACGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR CCA 72 bp CACCTTGACTCCCAACATCTAGGTGCAGCCCAGGGCTaGCCCGTCTCAATCCCCACTCCCCAGCAGAACGGA +
Preference number: 3 (lower is better)
Translates to: HLDSQHLGAAQG*PVSIPTPQQNG
Trigger: TCCGTTCTGCTGGGGAGTGGGGATTGAGACGGGCCAGCCCTGGGCTGCACCTAGATGTTGGGAGTCAAGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CAA 90 bp GCCCCTAACTGCTCCAGCCCCTTCAGGGCTCAGCAGGCAATAGCCCAAGTCAGCACGCCAGACGTGGACTaGGACTTGGTTGGATGCCTC +
Preference number: 3 (lower is better)
Translates to: APNCSSPFRAQQAIAQVSTPDVD*DLVGCL
Trigger: GAGGCATCCAACCAAGTCCAAGTCCACGTCTGGCGT...GCTGACTTGGGCTATTGCCTGCTGAGCCCTGAAGGGGCTGGAGCAGTTAGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CAA 90 bp CCACAGCACCTTGACTCCCAACATCTAGGTGCAGCCCAGGGCTGGCCCGTCTCAACGCCAGACGTGGACTaGGACTTGGTTGGATGCCTC +
Preference number: 3 (lower is better)
Translates to: PQHLDSQHLGAAQGWPVSTPDVD*DLVGCL
Trigger: GAGGCATCCAACCAAGTCCAAGTCCACGTCTGGCGT...TGAGACGGGCCAGCCCTGGGCTGCACCTAGATGTTGGGAGTCAAGGTGCTGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR GCA 72 bp AGACCTGGGATGAGTGATAAGCCGCTGGCCCCTAACTaGTCCAGCCCCTTCAGGGCTCAGCAGGCAATAGCC +
Preference number: 3 (lower is better)
Translates to: RPGMSDKPLAPN*SSPFRAQQAIA
Trigger: GGCTATTGCCTGCTGAGCCCTGAAGGGGCTGGAGCAGTTAGGGGCCAGCGGCTTATCACTCATCCCAGGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR GCA 72 bp CGGAAGCTTTCTCACATAGGGGAGCGGAGCATGGGGTaGCCCAGAGTTCTGGAGCCGTGTCAGCCCTTTGCA +
Preference number: 3 (lower is better)
Translates to: RKLSHIGERSMG*PRVLEPCQPFA
Trigger: TGCAAAGGGCTGACACGGCTCCAGAACTCTGGGGCACCCCATGCTCCGCTCCCCTATGTGAGAAAGCTTCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR GCA 72 bp CCCATCCCTTGCCTTTCCCATGGGTCCTGTTCTGACTaGGGCCCTCCAGACCCACAGCACCTTGACTCCCAA +
Preference number: 3 (lower is better)
Translates to: PIPCLSHGSCSD*GPPDPQHLDSQ
Trigger: TTGGGAGTCAAGGTGCTGTGGGTCTGGAGGGCCGCAGTCAGAACAGGACCCATGGGAAAGGCAAGGGATGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 72 bp CTGGGAGGGGCGCACTGTCCTCCGGGCGGTTGTGCCTaGTGTTGGGACTGTAGGGTTTGGTTTGGAATAAGC +
Preference number: 3 (lower is better)
Translates to: LGGAHCPPGGCA*CWDCRVWFGIS
Trigger: GCTTATTCCAAACCAAACCCTACAGTCCCAACACCAGGCACAACCGCCCGGAGGACAGTGCGCCCCTCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR CCA 72 bp GCCCCAGAGTTCTGGAGCCGTGTCAGCCCTTTGCATTaGGAGTTGGAACCCAGGGCGGCTGGTTGGATAGCT +
Preference number: 3 (lower is better)
Translates to: APEFWSRVSPLH*ELEPRAAGWIA
Trigger: AGCTATCCAACCAGCCGCCCTGGGTTCCAACTCCCAATGCAAAGGGCTGACACGGCTCCAGAACTCTGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 72 bp CCCACTCCCCAGCAGAACGGAGCCTACAGAAGGGAGTaGAAAGGAGGGCTGGGTCCTAGAAGACAGCTGAGG +
Preference number: 3 (lower is better)
Translates to: PTPQQNGAYRRE*KGGLGPRRQLR
Trigger: CCTCAGCTGTCTTCTAGGACCCAGCCCTCCTTTCCACTCCCTTCTGTAGGCTCCGTTCTGCTGGGGAGTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CAA 90 bp CTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCTGGTATTTGTTGTTGTaGCTGTTGTTGCTTGGATCT +
Preference number: 3 (lower is better)
Translates to: LAASPLHRQPGKATLRRPWYLLL*LLLLGS
Trigger: AGATCCAAGCAACAACAGCAACAACAACAAATACCA...GGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CAA 90 bp CTGGGCCTGCTGCTTTCCCGTGACTCCCACACTTTACCTGCCCAGGGAGCAAACTGTCAGCCCTTTGCATaGGGAGTTGGAACCCAGGGC +
Preference number: 3 (lower is better)
Translates to: LGLLLSRDSHTLPAQGANCQPFA*GVGTQG
Trigger: GCCCTGGGTTCCAACTCCCAATGCAAAGGGCTGACA...GTTTGCTCCCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR TCA 72 bp TTGGGAGTTGGAACCCAGGGCGGCTGGTTGGATAGCTaGCGGCACTGGCAGCAACATTCAATGAGGCCAGGC +
Preference number: 3 (lower is better)
Translates to: LGVGTQGGWLDS*RHWQQHSMRPG
Trigger: GCCTGGCCTCATTGAATGTTGCTGCCAGTGCCGTCAGCTATCCAACCAGCCGCCCTGGGTTCCAACTCCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR TCA 72 bp TTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTaGCTCCCACACTTTACCTGCCCAGGGAGCAAACGG +
Preference number: 3 (lower is better)
Translates to: FPVPSTGPAAFP*LPHFTCPGSKR
Trigger: CCGTTTGCTCCCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 72 bp GGGACGAGCTCCCTCGATGCGGGTGTACGCCAGACGTaGACTTGGACTTGGTTGGATGCCTCTTGGTTTGGT +
Preference number: 3 (lower is better)
Translates to: GTSSLDAGVRQT*TWTWLDASWFG
Trigger: ACCAAACCAAGAGGCATCCAACCAAGTCCAAGTCCACGTCTGGCGTACACCCGCATCGAGGGAGCTCGTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 72 bp CGAGGGCCCACCTGTCCACGTTCACAGCGTGAGGACTaGGTCCTCGCTGGCTGGGCTTTCTTTGTTCTTTGT +
Preference number: 3 (lower is better)
Translates to: RGPTCPRSQRED*VLAGWAFFVLC
Trigger: ACAAAGAACAAAGAAAGCCCAGCCAGCGAGGACCCAGTCCTCACGCTGTGAACGTGGACAGGTGGGCCCTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CAA 90 bp GCCCTTCATGGTCCGAGAAGGAGACGGTGGAAGGTTTCACTACAACAGAAACAGGGCTCTGAGGGAGGCTaGGCCTGGCACTTCTGGAGC +
Preference number: 3 (lower is better)
Translates to: ALHGPRRRRWKVSLQQKQGSEGG*AWHFWS
Trigger: GCTCCAGAAGTGCCAGGCCAAGCCTCCCTCAGAGCC...CTGTTTCTGTTGTAGTGAAACCTTCCACCGTCTCCTTCTCGGACCATGAAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR CAA 90 bp CTTGACTCCCAACATCTAGGTGCAGCCCAGGGCTGGCCCGTCTCAATCCCCACTCTGGCTGGGCTTTCTTaGTTCTTTGTAGCCGGAAGC +
Preference number: 3 (lower is better)
Translates to: LDSQHLGAAQGWPVSIPTLAGLS*FFVAGS
Trigger: GCTTCCGGCTACAAAGAACAAAGAAAGCCCAGCCAG...AGTGGGGATTGAGACGGGCCAGCCCTGGGCTGCACCTAGATGTTGGGAGTCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 72 bp GGGGCGCACTGTCCTCCGGGCGGTTGTGCCTGGTGTTaGGACTGTAGGGTTTGGTTTGGAATAAGCTGTAGT +
Preference number: 3 (lower is better)
Translates to: GAHCPPGGCAWC*DCRVWFGISCS
Trigger: ACTACAGCTTATTCCAAACCAAACCCTACAGTCCCAACACCAGGCACAACCGCCCGGAGGACAGTGCGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR CCA 72 bp TGGGCAGGGCTCAGAGTGGGTAGCGGGCATGGTGTATaGTGGAGGAGATGGGGTTTGATGGGACTTACAGCT +
Preference number: 3 (lower is better)
Translates to: WAGLRVGSGHGV*WRRWGLMGLTA
Trigger: AGCTGTAAGTCCCATCAAACCCCATCTCCTCCACCATACACCATGCCCGCTACCCACTCTGAGCCCTGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR TCA 72 bp GACCAGAGGAAGGAAGGTGATACTGTGTCCCAGGCCTaGCTACTGGAACCCTGGCCTTTCCTGGTATGGACC +
Preference number: 3 (lower is better)
Translates to: DQRKEGDTVSQA*LLEPWPFLVWT
Trigger: GGTCCATACCAGGAAAGGCCAGGGTTCCAGTAGTCAGGCCTGGGACACAGTATCACCTTCCTTCCTCTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR GCA 72 bp TTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTaGTTTCCCGTGACTCCCACACTTTACCTGCCCAGG +
Preference number: 3 (lower is better)
Translates to: LIPLPCSIHWAC*FPVTPTLYLPR
Trigger: CCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 72 bp GCAGGGCTCAGAGTGGGTAGCGGGCATGGTGTATGGTaGAGGAGATGGGGTTTGATGGGACTTACAGCTTTG +
Preference number: 3 (lower is better)
Translates to: AGLRVGSGHGVW*RRWGLMGLTAL
Trigger: CAAAGCTGTAAGTCCCATCAAACCCCATCTCCTCCACCATACACCATGCCCGCTACCCACTCTGAGCCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR CCA 72 bp AGTAGACCATCTCATAGCAATGGGCAGGGCTCAGAGTaGGTAGCGGGCATGGTGTATGGTGGAGGAGATGGG +
Preference number: 3 (lower is better)
Translates to: SRPSHSNGQGSE*VAGMVYGGGDG
Trigger: CCCATCTCCTCCACCATACACCATGCCCGCTACCCACTCTGAGCCCTGCCCATTGCTATGAGATGGTCTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR CAA 90 bp GGTCACACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTGGGGCTCGGCTTTGCCCAGGGGCTTCTaGATACCTCTTCCCTGTTCC +
Preference number: 3 (lower is better)
Translates to: GHTVEAYRMVRKEAWGSALPRGF*IPLPCS
Trigger: GGAACAGGGAAGAGGTATCAAGAAGCCCCTGGGCAA...AGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGTGTGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR GCA 72 bp TTCTTGATACCTCTTCCCTGTTCCATCCACTGGGCCTaGTGCTTTCCCGTGACTCCCACACTTTACCTGCCC +
Preference number: 3 (lower is better)
Translates to: FLIPLPCSIHWA*CFPVTPTLYLP
Trigger: GGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 72 bp GGGTGGGGAGACCAGCTGGCTGGAGGTAAAAATCTATaGACTTTAGAGTCGCAGAGAGTCAGCTCGCTGGTC +
Preference number: 3 (lower is better)
Translates to: GWGDQLAGGKNL*TLESQRVSSLV
Trigger: GACCAGCGAGCTGACTCTCTGCGACTCTAAAGTCCATAGATTTTTACCTCCAGCCAGCTGGTCTCCCCACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR CCA 72 bp GGAAGGAAGGTGATACTGTGTCCCAGGCCTGACTACTaGAACCCTGGCCTTTCCTGGTATGGACCGCTACAA +
Preference number: 3 (lower is better)
Translates to: GRKVILCPRPDY*NPGLSWYGPLQ
Trigger: TTGTAGCGGTCCATACCAGGAAAGGCCAGGGTTCCAGTAGTCAGGCCTGGGACACAGTATCACCTTCCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR CCA 72 bp CCACGTTCACAGCGTGAGGACTGGGTCCTCGCTGGCTaGGCTTTCTTTGTTCTTTGTAGCCGGAAGCTTTCT +
Preference number: 3 (lower is better)
Translates to: PRSQREDWVLAG*AFFVLCSRKLS
Trigger: AGAAAGCTTCCGGCTACAAAGAACAAAGAAAGCCCAGCCAGCGAGGACCCAGTCCTCACGCTGTGAACGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CAA 90 bp GGTCACACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTGGGGCTCGGCTCTGGCTGGGCTTTCTTaGTTCTTTGTAGCCGGAAGC +
Preference number: 3 (lower is better)
Translates to: GHTVEAYRMVRKEAWGSALAGLS*FFVAGS
Trigger: GCTTCCGGCTACAAAGAACAAAGAAAGCCCAGCCAG...AGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGTGTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CCA 72 bp CCGGGCGGTTGTGCCTGGTGTTGGGACTGTAGGGTTTaGTTTGGAATAAGCTGTAGTGTGAATGCTGTGAGG +
Preference number: 3 (lower is better)
Translates to: PGGCAWCWDCRV*FGISCSVNAVR
Trigger: CCTCACAGCATTCACACTACAGCTTATTCCAAACCAAACCCTACAGTCCCAACACCAGGCACAACCGCCCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR CCA 72 bp CCTTTCCTGGTATGGACCGCTACAAAAGGGGATGGGTaGGGTGGCTCTGTAGGTCAAGAACAAATGGTCCCA +
Preference number: 3 (lower is better)
Translates to: PFLVWTATKGDG*GGSVGQEQMVP
Trigger: TGGGACCATTTGTTCTTGACCTACAGAGCCACCCCACCCATCCCCTTTTGTAGCGGTCCATACCAGGAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR CAA 90 bp GGGTGGGGTGGCTCTGTAGGTCAAGAACAAATGGTCCCAGAGCCATCAGCTCCAGGCATGCAGTTACTCTaGACAGTCTCTGTGAAAGGT +
Preference number: 3 (lower is better)
Translates to: GWGGSVGQEQMVPEPSAPGMQLL*TVSVKG
Trigger: ACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCC...TGGAGCTGATGGCTCTGGGACCATTTGTTCTTGACCTACAGAGCCACCCCACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR CCA 72 bp AGAGTGGGTAGCGGGCATGGTGTATGGTGGAGGAGATaGGGTTTGATGGGACTTACAGCTTTGGTCACTTTG +
Preference number: 3 (lower is better)
Translates to: RVGSGHGVWWRR*GLMGLTALVTL
Trigger: CAAAGTGACCAAAGCTGTAAGTCCCATCAAACCCCATCTCCTCCACCATACACCATGCCCGCTACCCACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR CAA 90 bp TGGAAAGGAGGGCTGGGTCCTAGAAGACAGCTGAGGCTGGCCTTCAAGCCCACGTGGTATTTGTTGTTGTaGCTGTTGTTGCTTGGATCT +
Preference number: 3 (lower is better)
Translates to: WKGGLGPRRQLRLAFKPTWYLLL*LLLLGS
Trigger: AGATCCAAGCAACAACAGCAACAACAACAAATACCA...CGTGGGCTTGAAGGCCAGCCTCAGCTGTCTTCTAGGACCCAGCCCTCCTTTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR-3UTR CAA 90 bp ACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTGGGGCTCGGCTGCAGTCTGGATGCCTCTTGGTTaGGTTGGTATTTGTTGTTGT +
Preference number: 3 (lower is better)
Translates to: TVEAYRMVRKEAWGSAAVWMPLG*VGICCC
Trigger: ACAACAACAAATACCAACCAAACCAAGAGGCATCCA...GACTGCAGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR TCA 72 bp TTGATGGGACTTACAGCTTTGGTCACTTTGTGGCCCTaGACCCCCAGAGTGGAGGGATTAACATCTGCTAGT +
Preference number: 3 (lower is better)
Translates to: LMGLTALVTLWP*TPRVEGLTSAS
Trigger: ACTAGCAGATGTTAATCCCTCCACTCTGGGGGTTCAGGGCCACAAAGTGACCAAAGCTGTAAGTCCCATCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR TCA 72 bp TGGTTAGTAAACTTTAATAGAAACGATAACTTCGGCTaGGTGGAAGTCCAGAGAGGGCATGCAGTTACTCTT +
Preference number: 3 (lower is better)
Translates to: WLVNFNRNDNFG*VEVQRGHAVTL
Trigger: AAGAGTAACTGCATGCCCTCTCTGGACTTCCACTCAGCCGAAGTTATCGTTTCTATTAAAGTTTACTAACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR CCA 72 bp ACAGAACAGTGTGCTGTGACTACTTGGACAGGAAGATaGTTAGTAAACTTTAATAGAAACGATAACTTCGGC +
Preference number: 3 (lower is better)
Translates to: TEQCAVTTWTGR*LVNFNRNDNFG
Trigger: GCCGAAGTTATCGTTTCTATTAAAGTTTACTAACCATCTTCCTGTCCAAGTAGTCACAGCACACTGTTCTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR CCA 72 bp GCAGTATTGCACACAGAACAGTGTGCTGTGACTACTTaGACAGGAAGATGGTTAGTAAACTTTAATAGAAAC +
Preference number: 3 (lower is better)
Translates to: AVLHTEQCAVTT*TGRWLVNFNRN
Trigger: GTTTCTATTAAAGTTTACTAACCATCTTCCTGTCCAAGTAGTCACAGCACACTGTTCTGTGTGCAATACTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR-3UTR CAA 90 bp AATAATACTGTTAATTTGAATGGTCACACCGTGGAAGCATACAGAATGGTAAGATGGATGCCTCTTGGTTaGGTTGGTATTTGTTGTTGT +
Preference number: 3 (lower is better)
Translates to: NNTVNLNGHTVEAYRMVRWMPLG*VGICCC
Trigger: ACAACAACAAATACCAACCAAACCAAGAGGCATCCA...TCTTACCATTCTGTATGCTTCCACGGTGTGACCATTCAAATTAACAGTATTATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR TCA 90 bp CCTGAGGCATGGGCATGGCCCTGGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCGCAGGTCGGGGTCCCTaGACCGGAAGGGGATGTTGG +
Preference number: 4 (lower is better)
Translates to: PEAWAWPWQGTLPSPWPGAGRGP*TGRGCW
Trigger: CCAACATCCCCTTCCGGTTCAGGGACCCCGACCTGC...GCCAGGCCAGGGGGACGGCAAGGTGCCCTGCCAGGGCCATGCCCATGCCTCAGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR GCA 90 bp TACACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCCTGGGGGACGAGCTCCGGTAGGCAACGGCGGTaGCCGTGGTGGGGTAGGGGA +
Preference number: 4 (lower is better)
Translates to: YTASQAKPLSGAPWGTSSGRQRR*PWWGRG
Trigger: TCCCCTACCCCACCACGGGCACCGCCGTTGCCTACC...GGAGCTCGTCCCCCAGGGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTGTA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp TACACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCCTGGGGGACGAGCTCCGTCACTGTAGGCTGCTaGGGTGGCGGCTGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: YTASQAKPLSGAPWGTSSVTVGC*GGGCWL
Trigger: CAGCCAGCAGCCGCCACCGCAGCAGCCTACAGTGAC...GGAGCTCGTCCCCCAGGGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTGTA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp CCTGAGGCATGGGCATGGCCCTGGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCCAATGGGCTGTGTGCTaGCCTCAGTGCCTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: PEAWAWPWQGTLPSPWPGQWAVC*PQCLAA
Trigger: AGCAGCCAGGCACTGAGGCCAGCACACAGCCCATTG...GCCAGGCCAGGGGGACGGCAAGGTGCCCTGCCAGGGCCATGCCCATGCCTCAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp CTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCGCTGCTGCTTCTCCGTaGGGTCGGAAGGGTGGAGTT +
Preference number: 4 (lower is better)
Translates to: LAASPLHRQPGKATLRRPAAASP*GRKGGV
Trigger: AACTCCACCCTTCCGACCCCACGGAGAAGCAGCAGC...GGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR TCA 90 bp GGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGTACGCAGGTCGGGGTCCCTaGACCGGAAGGGGATGTTGG +
Preference number: 4 (lower is better)
Translates to: GRAPCRPPGLAPAVCIPYAGRGP*TGRGCW
Trigger: CCAACATCCCCTTCCGGTTCAGGGACCCCGACCTGC...GTACGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCTGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR GCA 90 bp CTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCTCCGATGCTGTAGGTTaGTGTGGGGCCGATGGTGTG +
Preference number: 4 (lower is better)
Translates to: LAASPLHRQPGKATLRRPSDAVG*CGADGV
Trigger: CACACCATCGGCCCCACAGCAACCTACAGCATCGGA...GGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp CCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCCTGGGTTGTCTGTCTGTGCTaGTTCATCTGCCTGCGGCAC +
Preference number: 4 (lower is better)
Translates to: PRPHYTASQAKPLSGAPWVVCLC*FICLRH
Trigger: GTGCCGCAGGCAGATGAAGCAGCACAGACAGACAAC...CCAGGGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp GACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTTGGCCTGGCACTTCTGGTAGGCAACGGCGGTaGCCGTGGTGGGGTAGGGGA +
Preference number: 4 (lower is better)
Translates to: DLPELTEVALREAWPGTSGRQRR*PWWGRG
Trigger: TCCCCTACCCCACCACGGGCACCGCCGTTGCCTACC...AGAAGTGCCAGGCCAAGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR GCA 90 bp TGGGGCAGGGACATTTCCGTGTCTGTAAGGAATCCCAGAGCCAGGGTGGCCACGCCGGCCCCGCAGGTGTaGACCCCGGTAGGCAACGGC +
Preference number: 4 (lower is better)
Translates to: WGRDISVSVRNPRARVATPAPQV*TPVGNG
Trigger: GCCGTTGCCTACCGGGGTGCACACCTGCGGGGCCGG...CGTGGCCACCCTGGCTCTGGGATTCCTTACAGACACGGAAATGTCCCTGCCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR GCA 90 bp CTGGGCCTGCTGCTTTCCCGTGACTCCCACACTTTACCTGCCCAGGGAGCAAACCCGGCCCCGCAGGTGTaGACCCCGGTAGGCAACGGC +
Preference number: 4 (lower is better)
Translates to: LGLLLSRDSHTLPAQGANPAPQV*TPVGNG
Trigger: GCCGTTGCCTACCGGGGTGCACACCTGCGGGGCCGG...GTTTGCTCCCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp TACACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCCTGGGGGACGAGCTCCTCCGATGCTGTAGGTTaGTGTGGGGCCGATGGTGTG +
Preference number: 4 (lower is better)
Translates to: YTASQAKPLSGAPWGTSSSDAVG*CGADGV
Trigger: CACACCATCGGCCCCACAGCAACCTACAGCATCGGA...GGAGCTCGTCCCCCAGGGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTGTA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp AGGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGTACCTGCGGAGTAGTCCTGGGTaGGATGAGGCGGAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: RAPCRPPGLAPAVCIPYLRSSPG*DEAEVG
Trigger: CCCCACCTCCGCCTCATCCCACCCAGGACTACTCCG...CAGGTACGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR GCA 90 bp TGGCCAGACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTTGGCCTGGCGTGTGCTGGCCTCAGTaGCTGGCTGCTCAGGATGAG +
Preference number: 4 (lower is better)
Translates to: WPDLPELTEVALREAWPGVCWPQ*LAAQDE
Trigger: CTCATCCTGAGCAGCCAGGCACTGAGGCCAGCACAC...GCCAGGCCAAGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTCTGGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR GCA 90 bp GGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGTACCTGTGCTGCTTCATCTaGCTGCGGCACCGTCTGGGT +
Preference number: 4 (lower is better)
Translates to: GRAPCRPPGLAPAVCIPYLCCFI*LRHRLG
Trigger: ACCCAGACGGTGCCGCAGGCAGATGAAGCAGCACAG...GTACGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR GCA 90 bp TTGACAGTCTCTGTGAAAGGTGGGTGGAAGTCCCTCCCACTGGGAGGACCCCACCCGGCCCCGCAGGTGTaGACCCCGGTAGGCAACGGC +
Preference number: 4 (lower is better)
Translates to: LTVSVKGGWKSLPLGGPHPAPQV*TPVGNG
Trigger: GCCGTTGCCTACCGGGGTGCACACCTGCGGGGCCGG...GTGGGGTCCTCCCAGTGGGAGGGACTTCCACCCACCTTTCACAGAGACTGTCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR GCA 90 bp CCTGGCACTTCTGGAGCCCTGAGGGGCCGTGGTGCCCTGAGGCATGGGCATGGCTCCGATGCTGTAGGTTaGTGTGGGGCCGATGGTGTG +
Preference number: 4 (lower is better)
Translates to: PGTSGALRGRGALRHGHGSDAVG*CGADGV
Trigger: CACACCATCGGCCCCACAGCAACCTACAGCATCGGA...GCCATGCCCATGCCTCAGGGCACCACGGCCCCTCAGGGCTCCAGAAGTGCCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp TGGCCAGACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTTGGCCTGGCTCTGGGTCCCAGCAATaGGCTGTGTGCTGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: WPDLPELTEVALREAWPGSGSQQ*AVCWPQ
Trigger: CTGAGGCCAGCACACAGCCCATTGCTGGGACCCAGA...GCCAGGCCAAGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTCTGGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp CCTGAGGCATGGGCATGGCCCTGGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCGAAGGGTGGAGTTGCTaGTTGTCTGTCTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: PEAWAWPWQGTLPSPWPGEGWSC*LSVCAA
Trigger: AGCAGCACAGACAGACAACCAGCAACTCCACCCTTC...GCCAGGCCAGGGGGACGGCAAGGTGCCCTGCCAGGGCCATGCCCATGCCTCAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp GACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTTGGCCTGGCACTTCTCGGCGGTGCCCGTGGTaGGGTAGGGGAAACTGGTCA +
Preference number: 4 (lower is better)
Translates to: DLPELTEVALREAWPGTSRRCPW*GRGNWS
Trigger: TGACCAGTTTCCCCTACCCCACCACGGGCACCGCCG...AGAAGTGCCAGGCCAAGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp GACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTTGGCCTGGCACTTCTCAACGGCGGTGCCCGTaGTGGGGTAGGGGAAACTGG +
Preference number: 4 (lower is better)
Translates to: DLPELTEVALREAWPGTSQRRCP*WGRGNW
Trigger: CCAGTTTCCCCTACCCCACCACGGGCACCGCCGTTG...AGAAGTGCCAGGCCAAGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp CACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCCTGGGGGACGAGCTCCCTAAACGGACAAGAGAGTaGTGGGAACGCTGGAGAGGT +
Preference number: 4 (lower is better)
Translates to: HRQPGKATLRRPLGDELPKRTRE*WERWRG
Trigger: ACCTCTCCAGCGTTCCCACCACTCTCTTGTCCGTTT...AGGGAGCTCGTCCCCCAGGGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp AGGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGTACCTGTGTAGGCTGCTGCGGTaGCGGCTGCTGGCTGAGCAT +
Preference number: 4 (lower is better)
Translates to: RAPCRPPGLAPAVCIPYLCRLLR*RLLAEH
Trigger: ATGCTCAGCCAGCAGCCGCCACCGCAGCAGCCTACA...CAGGTACGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR TCA 90 bp GCCCCTAACTGCTCCAGCCCCTTCAGGGCTCAGCAGGCAATAGCCCAAGTCAGCGCAGGTCGGGGTCCCTaGACCGGAAGGGGATGTTGG +
Preference number: 4 (lower is better)
Translates to: APNCSSPFRAQQAIAQVSAGRGP*TGRGCW
Trigger: CCAACATCCCCTTCCGGTTCAGGGACCCCGACCTGC...GCTGACTTGGGCTATTGCCTGCTGAGCCCTGAAGGGGCTGGAGCAGTTAGGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp TTCCCCAGTGTCTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCCAATGGGCTGTGTGCTaGCCTCAGTGCCTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: FPSVWPRPHYTASQAKPLQWAVC*PQCLAA
Trigger: AGCAGCCAGGCACTGAGGCCAGCACACAGCCCATTG...GAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAGACACTGGGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp TTCCCCAGTGTCTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCTCTGGGTCCCAGCAATaGGCTGTGTGCTGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: FPSVWPRPHYTASQAKPLSGSQQ*AVCWPQ
Trigger: CTGAGGCCAGCACACAGCCCATTGCTGGGACCCAGA...GAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAGACACTGGGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp TGGCCAGACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTTGGCCTGGCGTGGGGTCGGAAGGGTaGAGTTGCTGGTTGTCTGTC +
Preference number: 4 (lower is better)
Translates to: WPDLPELTEVALREAWPGVGSEG*SCWLSV
Trigger: GACAGACAACCAGCAACTCCACCCTTCCGACCCCAC...GCCAGGCCAAGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTCTGGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp AGGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGTACCTGGCTGCTGCTTCTCCGTaGGGTCGGAAGGGTGGAGTT +
Preference number: 4 (lower is better)
Translates to: RAPCRPPGLAPAVCIPYLAAASP*GRKGGV
Trigger: AACTCCACCCTTCCGACCCCACGGAGAAGCAGCAGC...CAGGTACGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp ACTAGGCCTGGAACTCCTCTGTCAGCCAGCAAACCCGGGATGGCCAGACCTGCCCAACGGCGGTGCCCGTaGTGGGGTAGGGGAAACTGG +
Preference number: 4 (lower is better)
Translates to: TRPGTPLSASKPGMARPAQRRCP*WGRGNW
Trigger: CCAGTTTCCCCTACCCCACCACGGGCACCGCCGTTG...GGCAGGTCTGGCCATCCCGGGTTTGCTGGCTGACAGAGGAGTTCCAGGCCTAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp CCACAGCACCTTGACTCCCAACATCTAGGTGCAGCCCAGGGCTGGCCCGTCTCAGAGTGGTGGGAACGCTaGAGAGGTGGGGTAGGCCGG +
Preference number: 4 (lower is better)
Translates to: PQHLDSQHLGAAQGWPVSEWWER*RGGVGR
Trigger: CCGGCCTACCCCACCTCTCCAGCGTTCCCACCACTC...TGAGACGGGCCAGCCCTGGGCTGCACCTAGATGTTGGGAGTCAAGGTGCTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp CTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCCCTGATACACGACCCTaGAAGCAAACGGACAAGAGA +
Preference number: 4 (lower is better)
Translates to: LAASPLHRQPGKATLRRPPDTRP*KQTDKR
Trigger: TCTCTTGTCCGTTTGCTTCCAGGGTCGTGTATCAGG...GGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAG
64% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp CCTGGCACTTCTGGAGCCCTGAGGGGCCGTGGTGCCCTGAGGCATGGGCATGGCTGCTGTAGGTTGCTGTaGGGCCGATGGTGTGATGGT +
Preference number: 4 (lower is better)
Translates to: PGTSGALRGRGALRHGHGCCRLL*GRWCDG
Trigger: ACCATCACACCATCGGCCCCACAGCAACCTACAGCA...GCCATGCCCATGCCTCAGGGCACCACGGCCCCTCAGGGCTCCAGAAGTGCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR TCA 90 bp GGTGGTCAGGCTCAGGGAGGGTCTCTAGGTCCACAGGCAATACAGGGTAACCTTGGCTCCGGTGTCTGCTaGGGAGGGAGGGGGCACGGT +
Preference number: 4 (lower is better)
Translates to: GGQAQGGSLGPQAIQGNLGSGVC*GGRGHG
Trigger: ACCGTGCCCCCTCCCTCCTCAGCAGACACCGGAGCC...AAGGTTACCCTGTATTGCCTGTGGACCTAGAGACCCTCCCTGAGCCTGACCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR GCA 90 bp CCTGGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGCTCAGGATGAGTCTGTaGGGGTGTGTAGAGGGTCAT +
Preference number: 4 (lower is better)
Translates to: PGRAPCRPPGLAPAVCIPLRMSL*GCVEGH
Trigger: ATGACCCTCTACACACCCGCACAGACTCATCCTGAG...CGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCTGCCAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR GCA 90 bp TTCCCCAGTGTCTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCAATTGCCCGAACATTTaGCGCAGGTCGGGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: FPSVWPRPHYTASQAKPLNCPNI*RRSGSL
Trigger: CAGGGACCCCGACCTGCGGCAAATGTTCGGGCAATT...GAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAGACACTGGGGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp CTTCTTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACCCGGCCCCGCAGGTGTaGACCCCGGTAGGCAACGGC +
Preference number: 4 (lower is better)
Translates to: LLDTSSLFHPLGLLLSRDPAPQV*TPVGNG
Trigger: GCCGTTGCCTACCGGGGTGCACACCTGCGGGGCCGG...GTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAAGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp TGGAAAGGAGGGCTGGGTCCTAGAAGACAGCTGAGGCTGGCCTTCAAGCCCACGGTCACTGTAGGCTGCTaGGGTGGCGGCTGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: WKGGLGPRRQLRLAFKPTVTVGC*GGGCWL
Trigger: CAGCCAGCAGCCGCCACCGCAGCAGCCTACAGTGAC...CGTGGGCTTGAAGGCCAGCCTCAGCTGTCTTCTAGGACCCAGCCCTCCTTTCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp GACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTTGGCCTGGCACTTCTGCTGGCCTCAGTGCCTaGCTGCTCAGGATGAGTCTG +
Preference number: 4 (lower is better)
Translates to: DLPELTEVALREAWPGTSAGLSA*LLRMSL
Trigger: CAGACTCATCCTGAGCAGCCAGGCACTGAGGCCAGC...AGAAGTGCCAGGCCAAGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp TGGGGCAGGGACATTTCCGTGTCTGTAAGGAATCCCAGAGCCAGGGTGGCCACGCGGCGGTGCCCGTGGTaGGGTAGGGGAAACTGGTCA +
Preference number: 4 (lower is better)
Translates to: WGRDISVSVRNPRARVATRRCPW*GRGNWS
Trigger: TGACCAGTTTCCCCTACCCCACCACGGGCACCGCCG...CGTGGCCACCCTGGCTCTGGGATTCCTTACAGACACGGAAATGTCCCTGCCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR CCA 90 bp CTGGGCCTGCTGCTTTCCCGTGACTCCCACACTTTACCTGCCCAGGGAGCAAACCGGCGGTGCCCGTGGTaGGGTAGGGGAAACTGGTCA +
Preference number: 4 (lower is better)
Translates to: LGLLLSRDSHTLPAQGANRRCPW*GRGNWS
Trigger: TGACCAGTTTCCCCTACCCCACCACGGGCACCGCCG...GTTTGCTCCCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp CTTGACTCCCAACATCTAGGTGCAGCCCAGGGCTGGCCCGTCTCAATCCCCACTCGGCGGTGCCCGTGGTaGGGTAGGGGAAACTGGTCA +
Preference number: 4 (lower is better)
Translates to: LDSQHLGAAQGWPVSIPTRRCPW*GRGNWS
Trigger: TGACCAGTTTCCCCTACCCCACCACGGGCACCGCCG...AGTGGGGATTGAGACGGGCCAGCCCTGGGCTGCACCTAGATGTTGGGAGTCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp ACTAGGCCTGGAACTCCTCTGTCAGCCAGCAAACCCGGGATGGCCAGACCTGCCTGTAGGCTGCTGCGGTaGCGGCTGCTGGCTGAGCAT +
Preference number: 4 (lower is better)
Translates to: TRPGTPLSASKPGMARPACRLLR*RLLAEH
Trigger: ATGCTCAGCCAGCAGCCGCCACCGCAGCAGCCTACA...GGCAGGTCTGGCCATCCCGGGTTTGCTGGCTGACAGAGGAGTTCCAGGCCTAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR TCA 90 bp ACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACTCCCACACTGCAGGTCGGGGTCCCTaGACCGGAAGGGGATGTTGG +
Preference number: 4 (lower is better)
Translates to: TSSLFHPLGLLLSRDSHTAGRGP*TGRGCW
Trigger: CCAACATCCCCTTCCGGTTCAGGGACCCCGACCTGC...AGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR TCA 90 bp ACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTGGGGCTCGGCTGCAGTCGGCTCCGGTGTCTGCTaGGGAGGGAGGGGGCACGGT +
Preference number: 4 (lower is better)
Translates to: TVEAYRMVRKEAWGSAAVGSGVC*GGRGHG
Trigger: ACCGTGCCCCCTCCCTCCTCAGCAGACACCGGAGCC...GACTGCAGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp ACTAGGCCTGGAACTCCTCTGTCAGCCAGCAAACCCGGGATGGCCAGACCTGCCCAGCAATGGGCTGTGTaGTGGCCTCAGTGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: TRPGTPLSASKPGMARPAQQWAV*WPQCLA
Trigger: AGCCAGGCACTGAGGCCAGCACACAGCCCATTGCTG...GGCAGGTCTGGCCATCCCGGGTTTGCTGGCTGACAGAGGAGTTCCAGGCCTAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR GCA 90 bp GACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTTGGCCTGGCACTTCTAATTGCCCGAACATTTaGCGCAGGTCGGGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: DLPELTEVALREAWPGTSNCPNI*RRSGSL
Trigger: CAGGGACCCCGACCTGCGGCAAATGTTCGGGCAATT...AGAAGTGCCAGGCCAAGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp GCCCCTAACTGCTCCAGCCCCTTCAGGGCTCAGCAGGCAATAGCCCAAGTCAGCGCTGGCCTCAGTGCCTaGCTGCTCAGGATGAGTCTG +
Preference number: 4 (lower is better)
Translates to: APNCSSPFRAQQAIAQVSAGLSA*LLRMSL
Trigger: CAGACTCATCCTGAGCAGCCAGGCACTGAGGCCAGC...GCTGACTTGGGCTATTGCCTGCTGAGCCCTGAAGGGGCTGGAGCAGTTAGGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp CCACAGCACCTTGACTCCCAACATCTAGGTGCAGCCCAGGGCTGGCCCGTCTCATCTGGGTCCCAGCAATaGGCTGTGTGCTGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: PQHLDSQHLGAAQGWPVSSGSQQ*AVCWPQ
Trigger: CTGAGGCCAGCACACAGCCCATTGCTGGGACCCAGA...TGAGACGGGCCAGCCCTGGGCTGCACCTAGATGTTGGGAGTCAAGGTGCTGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp TGGGTGGAAGTCCCTCCCACTGGGAGGACCCCACTGACTAGGCCTGGAACTCCTGCTGCTGCTTCTCCGTaGGGTCGGAAGGGTGGAGTT +
Preference number: 4 (lower is better)
Translates to: WVEVPPTGRTPLTRPGTPAAASP*GRKGGV
Trigger: AACTCCACCCTTCCGACCCCACGGAGAAGCAGCAGC...AGGAGTTCCAGGCCTAGTCAGTGGGGTCCTCCCAGTGGGAGGGACTTCCACCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp GCGGGAAAAGGGTCCGAAACAGCAGAAGGCAAGGGGCTCCGTACAGAGGACAGACAACGGCGGTGCCCGTaGTGGGGTAGGGGAAACTGG +
Preference number: 4 (lower is better)
Translates to: AGKGSETAEGKGLRTEDRQRRCP*WGRGNW
Trigger: CCAGTTTCCCCTACCCCACCACGGGCACCGCCGTTG...TCTGTCCTCTGTACGGAGCCCCTTGCCTTCTGCTGTTTCGGACCCTTTTCCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp GGCCCACCTGTCCACGTTCACAGCGTGAGGACTGGGTCCTCGCTGGCTGGGCTTCCCCGCCCACGGGACTaGCATTTTAACAAGCGTTTG +
Preference number: 4 (lower is better)
Translates to: GPPVHVHSVRTGSSLAGLPRPRD*HFNKRL
Trigger: CAAACGCTTGTTAAAATGCCAGTCCCGTGGGCGGGG...AAGCCCAGCCAGCGAGGACCCAGTCCTCACGCTGTGAACGTGGACAGGTGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp GGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGTACAAACGGACAAGAGAGTaGTGGGAACGCTGGAGAGGT +
Preference number: 4 (lower is better)
Translates to: GRAPCRPPGLAPAVCIPYKRTRE*WERWRG
Trigger: ACCTCTCCAGCGTTCCCACCACTCTCTTGTCCGTTT...GTACGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR CCA 90 bp CTTGACTCCCAACATCTAGGTGCAGCCCAGGGCTGGCCCGTCTCAATCCCCACTTGTAGGCTGCTGCGGTaGCGGCTGCTGGCTGAGCAT +
Preference number: 4 (lower is better)
Translates to: LDSQHLGAAQGWPVSIPTCRLLR*RLLAEH
Trigger: ATGCTCAGCCAGCAGCCGCCACCGCAGCAGCCTACA...AGTGGGGATTGAGACGGGCCAGCCCTGGGCTGCACCTAGATGTTGGGAGTCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp GCCCCTAACTGCTCCAGCCCCTTCAGGGCTCAGCAGGCAATAGCCCAAGTCAGCGGGATGAGGCGGAGGTaGGGCATATTCAGCTGGGAT +
Preference number: 4 (lower is better)
Translates to: APNCSSPFRAQQAIAQVSGMRRR*GIFSWD
Trigger: ATCCCAGCTGAATATGCCCCACCTCCGCCTCATCCC...GCTGACTTGGGCTATTGCCTGCTGAGCCCTGAAGGGGCTGGAGCAGTTAGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp ACTAGGCCTGGAACTCCTCTGTCAGCCAGCAAACCCGGGATGGCCAGACCTGCCGGGATGAGGCGGAGGTaGGGCATATTCAGCTGGGAT +
Preference number: 4 (lower is better)
Translates to: TRPGTPLSASKPGMARPAGMRRR*GIFSWD
Trigger: ATCCCAGCTGAATATGCCCCACCTCCGCCTCATCCC...GGCAGGTCTGGCCATCCCGGGTTTGCTGGCTGACAGAGGAGTTCCAGGCCTAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp CTGGGCCTGCTGCTTTCCCGTGACTCCCACACTTTACCTGCCCAGGGAGCAAACGCTGGCCTCAGTGCCTaGCTGCTCAGGATGAGTCTG +
Preference number: 4 (lower is better)
Translates to: LGLLLSRDSHTLPAQGANAGLSA*LLRMSL
Trigger: CAGACTCATCCTGAGCAGCCAGGCACTGAGGCCAGC...GTTTGCTCCCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp CTGGGCCTGCTGCTTTCCCGTGACTCCCACACTTTACCTGCCCAGGGAGCAAACGCTGCTGCTTCTCCGTaGGGTCGGAAGGGTGGAGTT +
Preference number: 4 (lower is better)
Translates to: LGLLLSRDSHTLPAQGANAAASP*GRKGGV
Trigger: AACTCCACCCTTCCGACCCCACGGAGAAGCAGCAGC...GTTTGCTCCCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp AACCCGGGATGGCCAGACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTAGACATGTAGTCGTTTaGGCTGCTGCTTCTCCGTGG +
Preference number: 4 (lower is better)
Translates to: NPGWPDLPELTEVALREARHVVV*AAASPW
Trigger: CCACGGAGAAGCAGCAGCCCAAACGACTACATGTCT...AGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTCTGGCCATCCCGGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR CAA 72 bp TGCCCCAGAGTTCTGGAGCCGTGTCAGCCCTTTGCATaGGGAGTTGGAACCCAGGGCGGCTGGTTGGATAGC +
Preference number: 4 (lower is better)
Translates to: CPRVLEPCQPFA*GVGTQGGWLDS
Trigger: GCTATCCAACCAGCCGCCCTGGGTTCCAACTCCCAATGCAAAGGGCTGACACGGCTCCAGAACTCTGGGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp GGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGTCCCTCCCAGGTAGGCAACGGCGGTaGCCGTGGTGGGGTAGGGGA +
Preference number: 4 (lower is better)
Translates to: GMQLLLTVSVKGGWKSLPGRQRR*PWWGRG
Trigger: TCCCCTACCCCACCACGGGCACCGCCGTTGCCTACC...TGGGAGGGACTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp TTTCCCATGGGTCCTGTTCTGACTGCGGCCCTCCAGACCCACAGCACCTTGACTCAATGGGCTGTGTGCTaGCCTCAGTGCCTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: FPMGPVLTAALQTHSTLTQWAVC*PQCLAA
Trigger: AGCAGCCAGGCACTGAGGCCAGCACACAGCCCATTG...AGTCAAGGTGCTGTGGGTCTGGAGGGCCGCAGTCAGAACAGGACCCATGGGAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp GGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGTACCTGGTGGGGTAGGGGAAACTaGTCACTGCATAGAATTCAG +
Preference number: 4 (lower is better)
Translates to: GHLAVPLAWLPLYAYRTWWGRGN*SLHRIQ
Trigger: CTGAATTCTATGCAGTGACCAGTTTCCCCTACCCCA...CCAGGTACGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp GCCCCTAACTGCTCCAGCCCCTTCAGGGCTCAGCAGGCAATAGCCCAAGTCAGCCTCCATAAGTTGGAATaGGGGGTGGAGGTGGTGCAG +
Preference number: 4 (lower is better)
Translates to: APNCSSPFRAQQAIAQVSLHKLE*GVEVVQ
Trigger: CTGCACCACCTCCACCCCCCATTCCAACTTATGGAG...GCTGACTTGGGCTATTGCCTGCTGAGCCCTGAAGGGGCTGGAGCAGTTAGGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp TGGGTGGAAGTCCCTCCCACTGGGAGGACCCCACTGACTAGGCCTGGAACTCCTCTCCATAAGTTGGAATaGGGGGTGGAGGTGGTGCAG +
Preference number: 4 (lower is better)
Translates to: WVEVPPTGRTPLTRPGTPLHKLE*GVEVVQ
Trigger: CTGCACCACCTCCACCCCCCATTCCAACTTATGGAG...AGGAGTTCCAGGCCTAGTCAGTGGGGTCCTCCCAGTGGGAGGGACTTCCACCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR GCA 90 bp TTTCCCATGGGTCCTGTTCTGACTGCGGCCCTCCAGACCCACAGCACCTTGACTAATTGCCCGAACATTTaGCGCAGGTCGGGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: FPMGPVLTAALQTHSTLTNCPNI*RRSGSL
Trigger: CAGGGACCCCGACCTGCGGCAAATGTTCGGGCAATT...AGTCAAGGTGCTGTGGGTCTGGAGGGCCGCAGTCAGAACAGGACCCATGGGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp GAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGTCCCTCGTCACTGTAGGCTGCTaGGGTGGCGGCTGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: EGMQLLLTVSVKGGWKSLVTVGC*GGGCWL
Trigger: CAGCCAGCAGCCGCCACCGCAGCAGCCTACAGTGAC...GAGGGACTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp TGGAAAGGAGGGCTGGGTCCTAGAAGACAGCTGAGGCTGGCCTTCAAGCCCACGTGCTGTAGGTTGCTGTaGGGCCGATGGTGTGATGGT +
Preference number: 4 (lower is better)
Translates to: WKGGLGPRRQLRLAFKPTCCRLL*GRWCDG
Trigger: ACCATCACACCATCGGCCCCACAGCAACCTACAGCA...CGTGGGCTTGAAGGCCAGCCTCAGCTGTCTTCTAGGACCCAGCCCTCCTTTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp ACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTGGGGCTCGGCTGCAGTCCAGCAATGGGCTGTGTaGTGGCCTCAGTGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: TVEAYRMVRKEAWGSAAVQQWAV*WPQCLA
Trigger: AGCCAGGCACTGAGGCCAGCACACAGCCCATTGCTG...GACTGCAGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp CTTCTTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACCAGCAATGGGCTGTGTaGTGGCCTCAGTGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: LLDTSSLFHPLGLLLSRDQQWAV*WPQCLA
Trigger: AGCCAGGCACTGAGGCCAGCACACAGCCCATTGCTG...GTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAAGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp ACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTGGGGCTCGGCTGCAGTCCTGTGCTGCTTCATCTaGCTGCGGCACCGTCTGGGT +
Preference number: 4 (lower is better)
Translates to: TVEAYRMVRKEAWGSAAVLCCFI*LRHRLG
Trigger: ACCCAGACGGTGCCGCAGGCAGATGAAGCAGCACAG...GACTGCAGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp TTTCCCATGGGTCCTGTTCTGACTGCGGCCCTCCAGACCCACAGCACCTTGACTGTTGTCTGTCTGTGCTaGTTCATCTGCCTGCGGCAC +
Preference number: 4 (lower is better)
Translates to: FPMGPVLTAALQTHSTLTVVCLC*FICLRH
Trigger: GTGCCGCAGGCAGATGAAGCAGCACAGACAGACAAC...AGTCAAGGTGCTGTGGGTCTGGAGGGCCGCAGTCAGAACAGGACCCATGGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp ATACTGTGTCCCAGGCCTGACTACTGGAACCCTGGCCTTTCCTGGTATGGACCGTCCGATGCTGTAGGTTaGTGTGGGGCCGATGGTGTG +
Preference number: 4 (lower is better)
Translates to: ILCPRPDYWNPGLSWYGPSDAVG*CGADGV
Trigger: CACACCATCGGCCCCACAGCAACCTACAGCATCGGA...CGGTCCATACCAGGAAAGGCCAGGGTTCCAGTAGTCAGGCCTGGGACACAGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR CCA 90 bp GCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGTCCCTCCCACTGGGGCTGGCCTCAGTGCCTaGCTGCTCAGGATGAGTCTG +
Preference number: 4 (lower is better)
Translates to: AVTLDSLCERWVEVPPTGAGLSA*LLRMSL
Trigger: CAGACTCATCCTGAGCAGCCAGGCACTGAGGCCAGC...CCCAGTGGGAGGGACTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp CTGGGCCTGCTGCTTTCCCGTGACTCCCACACTTTACCTGCCCAGGGAGCAAACGAAGGGTGGAGTTGCTaGTTGTCTGTCTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: LGLLLSRDSHTLPAQGANEGWSC*LSVCAA
Trigger: AGCAGCACAGACAGACAACCAGCAACTCCACCCTTC...GTTTGCTCCCTGGGCAGGTAAAGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp TTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACTCCCGTGGGGTCGGAAGGGTaGAGTTGCTGGTTGTCTGTC +
Preference number: 4 (lower is better)
Translates to: LIPLPCSIHWACCFPVTPVGSEG*SCWLSV
Trigger: GACAGACAACCAGCAACTCCACCCTTCCGACCCCAC...GGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp CTTGACTCCCAACATCTAGGTGCAGCCCAGGGCTGGCCCGTCTCAATCCCCACTAGACATGTAGTCGTTTaGGCTGCTGCTTCTCCGTGG +
Preference number: 4 (lower is better)
Translates to: LDSQHLGAAQGWPVSIPTRHVVV*AAASPW
Trigger: CCACGGAGAAGCAGCAGCCCAAACGACTACATGTCT...AGTGGGGATTGAGACGGGCCAGCCCTGGGCTGCACCTAGATGTTGGGAGTCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp TTTCCCATGGGTCCTGTTCTGACTGCGGCCCTCCAGACCCACAGCACCTTGACTCTCCATAAGTTGGAATaGGGGGTGGAGGTGGTGCAG +
Preference number: 4 (lower is better)
Translates to: FPMGPVLTAALQTHSTLTLHKLE*GVEVVQ
Trigger: CTGCACCACCTCCACCCCCCATTCCAACTTATGGAG...AGTCAAGGTGCTGTGGGTCTGGAGGGCCGCAGTCAGAACAGGACCCATGGGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp TGGAAGTCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGGAGTGGTGGGAACGCTaGAGAGGTGGGGTAGGCCGG +
Preference number: 4 (lower is better)
Translates to: WKSREGMQLLLTVSVKGGEWWER*RGGVGR
Trigger: CCGGCCTACCCCACCTCTCCAGCGTTCCCACCACTC...CCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGACTTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR GCA 90 bp TTTCCCATGGGTCCTGTTCTGACTGCGGCCCTCCAGACCCACAGCACCTTGACTCTCAGGATGAGTCTGTaGGGGTGTGTAGAGGGTCAT +
Preference number: 4 (lower is better)
Translates to: FPMGPVLTAALQTHSTLTLRMSL*GCVEGH
Trigger: ATGACCCTCTACACACCCGCACAGACTCATCCTGAG...AGTCAAGGTGCTGTGGGTCTGGAGGGCCGCAGTCAGAACAGGACCCATGGGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp GCTGAGTGGAAGTCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGTCACTGTAGGCTGCTaGGGTGGCGGCTGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: AEWKSREGMQLLLTVSVKVTVGC*GGGCWL
Trigger: CAGCCAGCAGCCGCCACCGCAGCAGCCTACAGTGAC...TTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGACTTCCACTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp CTTCTTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACGGGATGAGGCGGAGGTaGGGCATATTCAGCTGGGAT +
Preference number: 4 (lower is better)
Translates to: LLDTSSLFHPLGLLLSRDGMRRR*GIFSWD
Trigger: ATCCCAGCTGAATATGCCCCACCTCCGCCTCATCCC...GTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp ACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTGGGGCTCGGCTGCAGTCGTGGGGTCGGAAGGGTaGAGTTGCTGGTTGTCTGTC +
Preference number: 4 (lower is better)
Translates to: TVEAYRMVRKEAWGSAAVVGSEG*SCWLSV
Trigger: GACAGACAACCAGCAACTCCACCCTTCCGACCCCAC...GACTGCAGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp TTTCCCATGGGTCCTGTTCTGACTGCGGCCCTCCAGACCCACAGCACCTTGACTAGACATGTAGTCGTTTaGGCTGCTGCTTCTCCGTGG +
Preference number: 4 (lower is better)
Translates to: FPMGPVLTAALQTHSTLTRHVVV*AAASPW
Trigger: CCACGGAGAAGCAGCAGCCCAAACGACTACATGTCT...AGTCAAGGTGCTGTGGGTCTGGAGGGCCGCAGTCAGAACAGGACCCATGGGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp CCACAGCACCTTGACTCCCAACATCTAGGTGCAGCCCAGGGCTGGCCCGTCTCATGGGGTAGGGGAAACTaGTCACTGCATAGAATTCAG +
Preference number: 4 (lower is better)
Translates to: PQHLDSQHLGAAQGWPVSWGRGN*SLHRIQ
Trigger: CTGAATTCTATGCAGTGACCAGTTTCCCCTACCCCA...TGAGACGGGCCAGCCCTGGGCTGCACCTAGATGTTGGGAGTCAAGGTGCTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp ATACTGTGTCCCAGGCCTGACTACTGGAACCCTGGCCTTTCCTGGTATGGACCGTGCTGTAGGTTGCTGTaGGGCCGATGGTGTGATGGT +
Preference number: 4 (lower is better)
Translates to: ILCPRPDYWNPGLSWYGPCCRLL*GRWCDG
Trigger: ACCATCACACCATCGGCCCCACAGCAACCTACAGCA...CGGTCCATACCAGGAAAGGCCAGGGTTCCAGTAGTCAGGCCTGGGACACAGTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR GCA 90 bp GGTGGTCAGGCTCAGGGAGGGTCTCTAGGTCCACAGGCAATACAGGGTAACCTTCTCAGGATGAGTCTGTaGGGGTGTGTAGAGGGTCAT +
Preference number: 4 (lower is better)
Translates to: GGQAQGGSLGPQAIQGNLLRMSL*GCVEGH
Trigger: ATGACCCTCTACACACCCGCACAGACTCATCCTGAG...AAGGTTACCCTGTATTGCCTGTGGACCTAGAGACCCTCCCTGAGCCTGACCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR GCA 90 bp TGGAAGTCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGCTGTGCTGCTTCATCTaGCTGCGGCACCGTCTGGGT +
Preference number: 4 (lower is better)
Translates to: WKSREGMQLLLTVSVKGGLCCFI*LRHRLG
Trigger: ACCCAGACGGTGCCGCAGGCAGATGAAGCAGCACAG...CCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGACTTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp TCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGCAATGGGCTGTGTGCTaGCCTCAGTGCCTGGCTGCT +
Preference number: 4 (lower is better)
Translates to: SREGMQLLLTVSVKGGWKQWAVC*PQCLAA
Trigger: AGCAGCCAGGCACTGAGGCCAGCACACAGCCCATTG...CTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp GGGTGGGGTGGCTCTGTAGGTCAAGAACAAATGGTCCCAGAGCCATCAGCTCCAGAAGGGTGGAGTTGCTaGTTGTCTGTCTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: GWGGSVGQEQMVPEPSAPEGWSC*LSVCAA
Trigger: AGCAGCACAGACAGACAACCAGCAACTCCACCCTTC...TGGAGCTGATGGCTCTGGGACCATTTGTTCTTGACCTACAGAGCCACCCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR CCA 90 bp GGGTGGGGTGGCTCTGTAGGTCAAGAACAAATGGTCCCAGAGCCATCAGCTCCAAGACATGTAGTCGTTTaGGCTGCTGCTTCTCCGTGG +
Preference number: 4 (lower is better)
Translates to: GWGGSVGQEQMVPEPSAPRHVVV*AAASPW
Trigger: CCACGGAGAAGCAGCAGCCCAAACGACTACATGTCT...TGGAGCTGATGGCTCTGGGACCATTTGTTCTTGACCTACAGAGCCACCCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
3UTR CAA 72 bp GGTAGCGGGCATGGTGTATGGTGGAGGAGATGGGGTTaGATGGGACTTACAGCTTTGGTCACTTTGTGGCCC +
Preference number: 4 (lower is better)
Translates to: GSGHGVWWRRWG*MGLTALVTLWP
Trigger: GGGCCACAAAGTGACCAAAGCTGTAAGTCCCATCAAACCCCATCTCCTCCACCATACACCATGCCCGCTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR TCA 90 bp GAGGGTGGTCAGGCTCAGGGAGGGTCTCTAGGTCCACAGGCAATACAGGGTAACGGCTCGGTCAGCATCTaGGCTAGTTTCAAAAGTTAC +
Preference number: 4 (lower is better)
Translates to: EGGQAQGGSLGPQAIQGNGSVSI*ASFKSY
Trigger: GTAACTTTTGAAACTAGCTCAGATGCTGACCGAGCC...GTTACCCTGTATTGCCTGTGGACCTAGAGACCCTCCCTGAGCCTGACCACCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR GCA 90 bp GCTGAGTGGAAGTCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAACAGCAATGGGCTGTGTaGTGGCCTCAGTGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: AEWKSREGMQLLLTVSVKQQWAV*WPQCLA
Trigger: AGCCAGGCACTGAGGCCAGCACACAGCCCATTGCTG...TTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGACTTCCACTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp GGTCACACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTGGGGCTCGGCTGAAGGGTGGAGTTGCTaGTTGTCTGTCTGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: GHTVEAYRMVRKEAWGSAEGWSC*LSVCAA
Trigger: AGCAGCACAGACAGACAACCAGCAACTCCACCCTTC...AGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGTGTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp ACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACTCCCACACTTGGGGTAGGGGAAACTaGTCACTGCATAGAATTCAG +
Preference number: 4 (lower is better)
Translates to: TSSLFHPLGLLLSRDSHTWGRGN*SLHRIQ
Trigger: CTGAATTCTATGCAGTGACCAGTTTCCCCTACCCCA...AGTGTGGGAGTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp TACAACAGAAACAGAAATGAGGGCTTGCGGTTTCCGAGCGTCGGCTGCAGCATGCTCCATAAGTTGGAATaGGGGGTGGAGGTGGTGCAG +
Preference number: 4 (lower is better)
Translates to: YNRNRNEGLRFPSVGCSMLHKLE*GVEVVQ
Trigger: CTGCACCACCTCCACCCCCCATTCCAACTTATGGAG...CATGCTGCAGCCGACGCTCGGAAACCGCAAGCCCTCATTTCTGTTTCTGTTGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR CCA 90 bp ATACTGTGTCCCAGGCCTGACTACTGGAACCCTGGCCTTTCCTGGTATGGACCGCCTGATACACGACCCTaGAAGCAAACGGACAAGAGA +
Preference number: 4 (lower is better)
Translates to: ILCPRPDYWNPGLSWYGPPDTRP*KQTDKR
Trigger: TCTCTTGTCCGTTTGCTTCCAGGGTCGTGTATCAGG...CGGTCCATACCAGGAAAGGCCAGGGTTCCAGTAGTCAGGCCTGGGACACAGTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR CCA 90 bp TCAGGAATAGAAAAGGAGGGTTCCGTTTCCATAGCTTCTGTGGCTGATGCTGGATGTAGGCTGCTGCGGTaGCGGCTGCTGGCTGAGCAT +
Preference number: 4 (lower is better)
Translates to: SGIEKEGSVSIASVADAGCRLLR*RLLAEH
Trigger: ATGCTCAGCCAGCAGCCGCCACCGCAGCAGCCTACA...TCCAGCATCAGCCACAGAAGCTATGGAAACGGAACCCTCCTTTTCTATTCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
3UTR CAA 72 bp GCTGAGTGGAAGTCCAGAGAGGGCATGCAGTTACTCTaGACAGTCTCTGTGAAAGGTGGGTGGAAGTCCCTC +
Preference number: 4 (lower is better)
Translates to: AEWKSREGMQLL*TVSVKGGWKSL
Trigger: GAGGGACTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGACTTCCACTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
3UTR CAA 72 bp GTAAGGAATCCCAGAGCCAGGGTGGCCACGGCAGTATaGCACACAGAACAGTGTGCTGTGACTACTTGGACA +
Preference number: 4 (lower is better)
Translates to: VRNPRARVATAV*HTEQCAVTTWT
Trigger: TGTCCAAGTAGTCACAGCACACTGTTCTGTGTGCAATACTGCCGTGGCCACCCTGGCTCTGGGATTCCTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR GCA 90 bp GCCCTTCATGGTCCGAGAAGGAGACGGTGGAAGGTTTCACTACAACAGAAACAGGTTGTCTGTCTGTGCTaGTTCATCTGCCTGCGGCAC +
Preference number: 4 (lower is better)
Translates to: ALHGPRRRRWKVSLQQKQVVCLC*FICLRH
Trigger: GTGCCGCAGGCAGATGAAGCAGCACAGACAGACAAC...CTGTTTCTGTTGTAGTGAAACCTTCCACCGTCTCCTTCTCGGACCATGAAGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR GCA 90 bp TCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGGTTGTCTGTCTGTGCTaGTTCATCTGCCTGCGGCAC +
Preference number: 4 (lower is better)
Translates to: SREGMQLLLTVSVKGGWKVVCLC*FICLRH
Trigger: GTGCCGCAGGCAGATGAAGCAGCACAGACAGACAAC...CTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp GCTGAGTGGAAGTCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGGATGAGGCGGAGGTaGGGCATATTCAGCTGGGAT +
Preference number: 4 (lower is better)
Translates to: AEWKSREGMQLLLTVSVKGMRRR*GIFSWD
Trigger: ATCCCAGCTGAATATGCCCCACCTCCGCCTCATCCC...TTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGACTTCCACTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp ATACTGTGTCCCAGGCCTGACTACTGGAACCCTGGCCTTTCCTGGTATGGACCGTGGGGTAGGGGAAACTaGTCACTGCATAGAATTCAG +
Preference number: 4 (lower is better)
Translates to: ILCPRPDYWNPGLSWYGPWGRGN*SLHRIQ
Trigger: CTGAATTCTATGCAGTGACCAGTTTCCCCTACCCCA...CGGTCCATACCAGGAAAGGCCAGGGTTCCAGTAGTCAGGCCTGGGACACAGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR CCA 90 bp GCCCTTCATGGTCCGAGAAGGAGACGGTGGAAGGTTTCACTACAACAGAAACAGCCCCGCCCACGGGACTaGCATTTTAACAAGCGTTTG +
Preference number: 4 (lower is better)
Translates to: ALHGPRRRRWKVSLQQKQPRPRD*HFNKRL
Trigger: CAAACGCTTGTTAAAATGCCAGTCCCGTGGGCGGGG...CTGTTTCTGTTGTAGTGAAACCTTCCACCGTCTCCTTCTCGGACCATGAAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR CCA 90 bp TGGTGTTGGGACTGTAGGGTTTGGTTTGGAATAAGCTGTAGTGTGAATGCTGTGTCTGGGTCCCAGCAATaGGCTGTGTGCTGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: WCWDCRVWFGISCSVNAVSGSQQ*AVCWPQ
Trigger: CTGAGGCCAGCACACAGCCCATTGCTGGGACCCAGA...CACAGCATTCACACTACAGCTTATTCCAAACCAAACCCTACAGTCCCAACACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR GCA 90 bp TGGTGTTGGGACTGTAGGGTTTGGTTTGGAATAAGCTGTAGTGTGAATGCTGTGAATTGCCCGAACATTTaGCGCAGGTCGGGGTCCCTG +
Preference number: 4 (lower is better)
Translates to: WCWDCRVWFGISCSVNAVNCPNI*RRSGSL
Trigger: CAGGGACCCCGACCTGCGGCAAATGTTCGGGCAATT...CACAGCATTCACACTACAGCTTATTCCAAACCAAACCCTACAGTCCCAACACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CCA 90 bp TGGTGTTGGGACTGTAGGGTTTGGTTTGGAATAAGCTGTAGTGTGAATGCTGTGGTGGGGTCGGAAGGGTaGAGTTGCTGGTTGTCTGTC +
Preference number: 4 (lower is better)
Translates to: WCWDCRVWFGISCSVNAVVGSEG*SCWLSV
Trigger: GACAGACAACCAGCAACTCCACCCTTCCGACCCCAC...CACAGCATTCACACTACAGCTTATTCCAAACCAAACCCTACAGTCCCAACACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR GCA 90 bp TCAGGAATAGAAAAGGAGGGTTCCGTTTCCATAGCTTCTGTGGCTGATGCTGGACTCAGGATGAGTCTGTaGGGGTGTGTAGAGGGTCAT +
Preference number: 4 (lower is better)
Translates to: SGIEKEGSVSIASVADAGLRMSL*GCVEGH
Trigger: ATGACCCTCTACACACCCGCACAGACTCATCCTGAG...TCCAGCATCAGCCACAGAAGCTATGGAAACGGAACCCTCCTTTTCTATTCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp AATAATACTGTTAATTTGAATGGTCACACCGTGGAAGCATACAGAATGGTAAGAGGTAGGCAACGGCGGTaGCCGTGGTGGGGTAGGGGA +
Preference number: 4 (lower is better)
Translates to: NNTVNLNGHTVEAYRMVRGRQRR*PWWGRG
Trigger: TCCCCTACCCCACCACGGGCACCGCCGTTGCCTACC...TCTTACCATTCTGTATGCTTCCACGGTGTGACCATTCAAATTAACAGTATTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp AATAATACTGTTAATTTGAATGGTCACACCGTGGAAGCATACAGAATGGTAAGACAACGGCGGTGCCCGTaGTGGGGTAGGGGAAACTGG +
Preference number: 4 (lower is better)
Translates to: NNTVNLNGHTVEAYRMVRQRRCP*WGRGNW
Trigger: CCAGTTTCCCCTACCCCACCACGGGCACCGCCGTTG...TCTTACCATTCTGTATGCTTCCACGGTGTGACCATTCAAATTAACAGTATTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR GCA 90 bp AATAATACTGTTAATTTGAATGGTCACACCGTGGAAGCATACAGAATGGTAAGACTGTGCTGCTTCATCTaGCTGCGGCACCGTCTGGGT +
Preference number: 4 (lower is better)
Translates to: NNTVNLNGHTVEAYRMVRLCCFI*LRHRLG
Trigger: ACCCAGACGGTGCCGCAGGCAGATGAAGCAGCACAG...TCTTACCATTCTGTATGCTTCCACGGTGTGACCATTCAAATTAACAGTATTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CCA 90 bp AATAATACTGTTAATTTGAATGGTCACACCGTGGAAGCATACAGAATGGTAAGATGCTGTAGGTTGCTGTaGGGCCGATGGTGTGATGGT +
Preference number: 4 (lower is better)
Translates to: NNTVNLNGHTVEAYRMVRCCRLL*GRWCDG
Trigger: ACCATCACACCATCGGCCCCACAGCAACCTACAGCA...TCTTACCATTCTGTATGCTTCCACGGTGTGACCATTCAAATTAACAGTATTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS CCA 90 bp CCCTGGAAGCAAACGGACAAGAGAGTGGTGGGAACGCTGGAGAGGTaGGGTAGGCCGGCTCCGGTGTCTGCTGAGGAGGGAGGGGGCACG +
Preference number: 5 (lower is better)
Translates to: PWKQTDKRVVGTLER*GRPAPVSAEEGGGT
Trigger: CGTGCCCCCTCCCTCCTCAGCAGACACCGGAGCCGGCCTACCCCACCTCTCCAGCGTTCCCACCACTCTCTTGTCCGTTTGCTTCCAGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000117731.8
CDS-3UTR CAA 90 bp CACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCCTGGGGGACGAGCTCCCTTTTAGCTTCCAGCCATaGGCATATGGGTTCCCAGGC +
Preference number: 5 (lower is better)
Translates to: HRQPGKATLRRPLGDELPFSFQP*AYGFPG
Trigger: GCCTGGGAACCCATATGCCAATGGCTGGAAGCTAAA...AGGGAGCTCGTCCCCCAGGGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CAA 90 bp TTCCCCAGTGTCTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCGAATTGCCCGAACATTaGCCGCAGGTCGGGGTCCCT +
Preference number: 5 (lower is better)
Translates to: FPSVWPRPHYTASQAKPLELPEH*PQVGVP
Trigger: AGGGACCCCGACCTGCGGCAAATGTTCGGGCAATTC...GAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAGACACTGGGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CAA 90 bp TACACCGCCAGCCAGGCAAAGCCACTCTCCGGCGCCCCCTGGGGGACGAGCTCCACAAACCCAAAACCCTaGGAGCCCCGCTCGTTAAAA +
Preference number: 5 (lower is better)
Translates to: YTASQAKPLSGAPWGTSSTNPKP*EPRSLK
Trigger: TTTTAACGAGCGGGGCTCCAAGGGTTTTGGGTTTGT...GGAGCTCGTCCCCCAGGGGGCGCCGGAGAGTGGCTTTGCCTGGCTGGCGGTGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CAA 90 bp GGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGTACCTGGTTCCCAGGCTTCTTATaGGTCATGACCCGGGCTGTG +
Preference number: 5 (lower is better)
Translates to: GHLAVPLAWLPLYAYRTWFPGFL*VMTRAV
Trigger: CACAGCCCGGGTCATGACCAATAAGAAGCCTGGGAA...CCAGGTACGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CAA 90 bp CCTGAGGCATGGGCATGGCCCTGGCAGGGCACCTTGCCGTCCCCCTGGCCTGGCCATTTTAACAAGCGTTaGCTCCAGTGCCGCTCCATA +
Preference number: 5 (lower is better)
Translates to: PEAWAWPWQGTLPSPWPGHFNKR*LQCRSI
Trigger: TATGGAGCGGCACTGGAGCAAACGCTTGTTAAAATG...GCCAGGCCAGGGGGACGGCAAGGTGCCCTGCCAGGGCCATGCCCATGCCTCAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS CCA 90 bp CGTTTGGGCTGCTGCTTCTCCGTGGGGTCGGAAGGGTGGAGTTGCTaGTTGTCTGTCTGTGCTGCTTCATCTGCCTGCGGCACCGTCTGG +
Preference number: 5 (lower is better)
Translates to: RLGCCFSVGSEGWSC*LSVCAASSACGTVW
Trigger: CCAGACGGTGCCGCAGGCAGATGAAGCAGCACAGACAGACAACCAGCAACTCCACCCTTCCGACCCCACGGAGAAGCAGCAGCCCAAACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
ENSMUST00000136551.3
CDS CCA 90 bp ATACACGACCCTGGAAGCAAACGGACAAGAGAGTGGTGGGAACGCTaGAGAGGTGGGGTAGGCCGGCTCCGGTGTCTGCTGAGGAGGGAG +
Preference number: 5 (lower is better)
Translates to: IHDPGSKRTREWWER*RGGVGRLRCLLRRE
Trigger: CTCCCTCCTCAGCAGACACCGGAGCCGGCCTACCCCACCTCTCCAGCGTTCCCACCACTCTCTTGTCCGTTTGCTTCCAGGGTCGTGTAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000117731.8
CDS-3UTR CAA 90 bp TTCCCCAGTGTCTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCGAGACATGTAGTCGTTaGGGCTGCTGCTTCTCCGTG +
Preference number: 5 (lower is better)
Translates to: FPSVWPRPHYTASQAKPLETCSR*GCCFSV
Trigger: CACGGAGAAGCAGCAGCCCAAACGACTACATGTCTC...GAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAGACACTGGGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CAA 90 bp TTCCCCAGTGTCTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCTTCCCAGGCTTCTTATaGGTCATGACCCGGGCTGTG +
Preference number: 5 (lower is better)
Translates to: FPSVWPRPHYTASQAKPLFPGFL*VMTRAV
Trigger: CACAGCCCGGGTCATGACCAATAAGAAGCCTGGGAA...GAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAGACACTGGGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS GCA 90 bp AGTCGTTTGGGCTGCTGCTTCTCCGTGGGGTCGGAAGGGTGGAGTTaGTGGTTGTCTGTCTGTGCTGCTTCATCTGCCTGCGGCACCGTC +
Preference number: 5 (lower is better)
Translates to: SRLGCCFSVGSEGWS*WLSVCAASSACGTV
Trigger: GACGGTGCCGCAGGCAGATGAAGCAGCACAGACAGACAACCAGCAACTCCACCCTTCCGACCCCACGGAGAAGCAGCAGCCCAAACGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
ENSMUST00000136551.3
CDS CCA 90 bp AACAGGGGTCTGGCCGGAGTAGTCCTGGGTGGGATGAGGCGGAGGTaGGGCATATTCAGCTGGGATTCCATTCTGAGGCGGAGGAGGGTA +
Preference number: 5 (lower is better)
Translates to: NRGLAGVVLGGMRRR*GIFSWDSILRRRRV
Trigger: TACCCTCCTCCGCCTCAGAATGGAATCCCAGCTGAATATGCCCCACCTCCGCCTCATCCCACCCAGGACTACTCCGGCCAGACCCCTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
ENSMUST00000136551.3
CDS CCA 90 bp TCCATCCTGATACACGACCCTGGAAGCAAACGGACAAGAGAGTGGTaGGAACGCTGGAGAGGTGGGGTAGGCCGGCTCCGGTGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: SILIHDPGSKRTREW*ERWRGGVGRLRCLL
Trigger: CAGCAGACACCGGAGCCGGCCTACCCCACCTCTCCAGCGTTCCCACCACTCTCTTGTCCGTTTGCTTCCAGGGTCGTGTATCAGGATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000117731.8
CDS-3UTR CAA 90 bp TGGCCAGACCTGCCGGAGCTGACTGAGGTGGCTCTGAGGGAGGCTTGGCCTGGCACAAACCCAAAACCCTaGGAGCCCCGCTCGTTAAAA +
Preference number: 5 (lower is better)
Translates to: WPDLPELTEVALREAWPGTNPKP*EPRSLK
Trigger: TTTTAACGAGCGGGGCTCCAAGGGTTTTGGGTTTGT...GCCAGGCCAAGCCTCCCTCAGAGCCACCTCAGTCAGCTCCGGCAGGTCTGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CAA 90 bp GGCCCACCTGTCCACGTTCACAGCGTGAGGACTGGGTCCTCGCTGGCTGGGCTTTTTAGCTTCCAGCCATaGGCATATGGGTTCCCAGGC +
Preference number: 5 (lower is better)
Translates to: GPPVHVHSVRTGSSLAGLFSFQP*AYGFPG
Trigger: GCCTGGGAACCCATATGCCAATGGCTGGAAGCTAAA...AAGCCCAGCCAGCGAGGACCCAGTCCTCACGCTGTGAACGTGGACAGGTGGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CAA 90 bp AGGGCACCTTGCCGTCCCCCTGGCCTGGCTCCCGCTGTATGCATACCGTACCTGTTTAGCTTCCAGCCATaGGCATATGGGTTCCCAGGC +
Preference number: 5 (lower is better)
Translates to: RAPCRPPGLAPAVCIPYLFSFQP*AYGFPG
Trigger: GCCTGGGAACCCATATGCCAATGGCTGGAAGCTAAA...CAGGTACGGTATGCATACAGCGGGAGCCAGGCCAGGGGGACGGCAAGGTGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CAA 90 bp GGAAAAGGGTCCGAAACAGCAGAAGGCAAGGGGCTCCGTACAGAGGACAGAGCCGAATTGCCCGAACATTaGCCGCAGGTCGGGGTCCCT +
Preference number: 5 (lower is better)
Translates to: GKGSETAEGKGLRTEDRAELPEH*PQVGVP
Trigger: AGGGACCCCGACCTGCGGCAAATGTTCGGGCAATTC...GGCTCTGTCCTCTGTACGGAGCCCCTTGCCTTCTGCTGTTTCGGACCCTTTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CAA 90 bp TTCCCCAGTGTCTGGCCGCGTCCCCACTACACCGCCAGCCAGGCAAAGCCACTCACAAACCCAAAACCCTaGGAGCCCCGCTCGTTAAAA +
Preference number: 5 (lower is better)
Translates to: FPSVWPRPHYTASQAKPLTNPKP*EPRSLK
Trigger: TTTTAACGAGCGGGGCTCCAAGGGTTTTGGGTTTGT...GAGTGGCTTTGCCTGGCTGGCGGTGTAGTGGGGACGCGGCCAGACACTGGGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS CCA 90 bp AAATCCATCCTGATACACGACCCTGGAAGCAAACGGACAAGAGAGTaGTGGGAACGCTGGAGAGGTGGGGTAGGCCGGCTCCGGTGTCTG +
Preference number: 5 (lower is better)
Translates to: KSILIHDPGSKRTRE*WERWRGGVGRLRCL
Trigger: CAGACACCGGAGCCGGCCTACCCCACCTCTCCAGCGTTCCCACCACTCTCTTGTCCGTTTGCTTCCAGGGTCGTGTATCAGGATGGATTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000117731.8
CDS-3UTR CAA 90 bp GAGGGTGGTCAGGCTCAGGGAGGGTCTCTAGGTCCACAGGCAATACAGGGTAACGAGACATGTAGTCGTTaGGGCTGCTGCTTCTCCGTG +
Preference number: 5 (lower is better)
Translates to: EGGQAQGGSLGPQAIQGNETCSR*GCCFSV
Trigger: CACGGAGAAGCAGCAGCCCAAACGACTACATGTCTC...GTTACCCTGTATTGCCTGTGGACCTAGAGACCCTCCCTGAGCCTGACCACCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR CAA 90 bp TGTCCTCCGGGCGGTTGTGCCTGGTGTTGGGACTGTAGGGTTTGGTTTGGAATAGAATTGCCCGAACATTaGCCGCAGGTCGGGGTCCCT +
Preference number: 5 (lower is better)
Translates to: CPPGGCAWCWDCRVWFGIELPEH*PQVGVP
Trigger: AGGGACCCCGACCTGCGGCAAATGTTCGGGCAATTC...TATTCCAAACCAAACCCTACAGTCCCAACACCAGGCACAACCGCCCGGAGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CAA 90 bp GGTCACACCGTGGAAGCATACAGAATGGTAAGAAAGGAAGCCTGGGGCTCGGCTGAGACATGTAGTCGTTaGGGCTGCTGCTTCTCCGTG +
Preference number: 5 (lower is better)
Translates to: GHTVEAYRMVRKEAWGSAETCSR*GCCFSV
Trigger: CACGGAGAAGCAGCAGCCCAAACGACTACATGTCTC...AGCCGAGCCCCAGGCTTCCTTTCTTACCATTCTGTATGCTTCCACGGTGTGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CAA 90 bp CTTCTTGATACCTCTTCCCTGTTCCATCCACTGGGCCTGCTGCTTTCCCGTGACTTCCCAGGCTTCTTATaGGTCATGACCCGGGCTGTG +
Preference number: 5 (lower is better)
Translates to: LLDTSSLFHPLGLLLSRDFPGFL*VMTRAV
Trigger: CACAGCCCGGGTCATGACCAATAAGAAGCCTGGGAA...GTCACGGGAAAGCAGCAGGCCCAGTGGATGGAACAGGGAAGAGGTATCAAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103023.8
ENSMUST00000117731.8
CDS-3UTR CAA 90 bp TGGAAAGGAGGGCTGGGTCCTAGAAGACAGCTGAGGCTGGCCTTCAAGCCCACGCATTTTAACAAGCGTTaGCTCCAGTGCCGCTCCATA +
Preference number: 5 (lower is better)
Translates to: WKGGLGPRRQLRLAFKPTHFNKR*LQCRSI
Trigger: TATGGAGCGGCACTGGAGCAAACGCTTGTTAAAATG...CGTGGGCTTGAAGGCCAGCCTCAGCTGTCTTCTAGGACCCAGCCCTCCTTTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117731.8
CDS GCA 90 bp AGGATCAGCAGCGGCATAGACTCTACCATAACTGTCACTGTAGGCTaGTGCGGTGGCGGCTGCTGGCTGAGCATATCTGTAAGCTGCATA +
Preference number: 5 (lower is better)
Translates to: RISSGIDSTITVTVG*CGGGCWLSISVSCI
Trigger: TATGCAGCTTACAGATATGCTCAGCCAGCAGCCGCCACCGCAGCAGCCTACAGTGACAGTTATGGTAGAGTCTATGCCGCTGCTGATCCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
CDS-3UTR CAA 90 bp TCCAGAGAGGGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGGAGACATGTAGTCGTTaGGGCTGCTGCTTCTCCGTG +
Preference number: 5 (lower is better)
Translates to: SREGMQLLLTVSVKGGWKETCSR*GCCFSV
Trigger: CACGGAGAAGCAGCAGCCCAAACGACTACATGTCTC...CTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCCCTCTCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CAA 90 bp TGTCCTCCGGGCGGTTGTGCCTGGTGTTGGGACTGTAGGGTTTGGTTTGGAATAACAAACCCAAAACCCTaGGAGCCCCGCTCGTTAAAA +
Preference number: 5 (lower is better)
Translates to: CPPGGCAWCWDCRVWFGITNPKP*EPRSLK
Trigger: TTTTAACGAGCGGGGCTCCAAGGGTTTTGGGTTTGT...TATTCCAAACCAAACCCTACAGTCCCAACACCAGGCACAACCGCCCGGAGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CAA 90 bp GGCATGCAGTTACTCTTGACAGTCTCTGTGAAAGGTGGGTGGAAGTCCCTCCCAAACCGGAAGGGGATGTaGGAGACATGTAGTCGTTTG +
Preference number: 5 (lower is better)
Translates to: GMQLLLTVSVKGGWKSLPNRKGM*ETCSRL
Trigger: CAAACGACTACATGTCTCCAACATCCCCTTCCGGTT...TGGGAGGGACTTCCACCCACCTTTCACAGAGACTGTCAAGAGTAACTGCATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CAA 90 bp TGTAGGGTTTGGTTTGGAATAAGCTGTAGTGTGAATGCTGTGAGGGGGTCTCTTGAATTGCCCGAACATTaGCCGCAGGTCGGGGTCCCT +
Preference number: 5 (lower is better)
Translates to: CRVWFGISCSVNAVRGSLELPEH*PQVGVP
Trigger: AGGGACCCCGACCTGCGGCAAATGTTCGGGCAATTC...AAGAGACCCCCTCACAGCATTCACACTACAGCTTATTCCAAACCAAACCCTACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS-3UTR CAA 90 bp GCCCTTCATGGTCCGAGAAGGAGACGGTGGAAGGTTTCACTACAACAGAAACAGTTTAGCTTCCAGCCATaGGCATATGGGTTCCCAGGC +
Preference number: 5 (lower is better)
Translates to: ALHGPRRRRWKVSLQQKQFSFQP*AYGFPG
Trigger: GCCTGGGAACCCATATGCCAATGGCTGGAAGCTAAA...CTGTTTCTGTTGTAGTGAAACCTTCCACCGTCTCCTTCTCGGACCATGAAGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017576.11
CDS-3UTR CAA 90 bp TGGTGTTGGGACTGTAGGGTTTGGTTTGGAATAAGCTGTAGTGTGAATGCTGTGTTCCCAGGCTTCTTATaGGTCATGACCCGGGCTGTG +
Preference number: 5 (lower is better)
Translates to: WCWDCRVWFGISCSVNAVFPGFL*VMTRAV
Trigger: CACAGCCCGGGTCATGACCAATAAGAAGCCTGGGAA...CACAGCATTCACACTACAGCTTATTCCAAACCAAACCCTACAGTCCCAACACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS GCA 72 bp GGGGTCGGAAGGGTGGAGTTGCTGGTTGTCTGTCTGTaGTGCTTCATCTGCCTGCGGCACCGTCTGGGTCCC +
Preference number: 6 (lower is better)
Translates to: GVGRVELLVVCL*CFICLRHRLGP
Trigger: GGGACCCAGACGGTGCCGCAGGCAGATGAAGCAGCACAGACAGACAACCAGCAACTCCACCCTTCCGACCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
ENSMUST00000136551.3
CDS CAA 90 bp TTGGGCTGCTGCTTCTCCGTGGGGTCGGAAGGGTGGAGTTGCTGGTaGTCTGTCTGTGCTGCTTCATCTGCCTGCGGCACCGTCTGGGTC +
Preference number: 6 (lower is better)
Translates to: LGCCFSVGSEGWSCW*SVCAASSACGTVWV
Trigger: GACCCAGACGGTGCCGCAGGCAGATGAAGCAGCACAGACAGACAACCAGCAACTCCACCCTTCCGACCCCACGGAGAAGCAGCAGCCCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
ENSMUST00000136551.3
CDS GCA 72 bp GTCGGAAGGGTGGAGTTGCTGGTTGTCTGTCTGTGCTaGTTCATCTGCCTGCGGCACCGTCTGGGTCCCAGC +
Preference number: 6 (lower is better)
Translates to: VGRVELLVVCLC*FICLRHRLGPS
Trigger: GCTGGGACCCAGACGGTGCCGCAGGCAGATGAAGCAGCACAGACAGACAACCAGCAACTCCACCCTTCCGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
ENSMUST00000136551.3
CDS CCA 72 bp CTGGCCGGAGTAGTCCTGGGTGGGATGAGGCGGAGGTaGGGCATATTCAGCTGGGATTCCATTCTGAGGCGG +
Preference number: 6 (lower is better)
Translates to: LAGVVLGGMRRR*GIFSWDSILRR
Trigger: CCGCCTCAGAATGGAATCCCAGCTGAATATGCCCCACCTCCGCCTCATCCCACCCAGGACTACTCCGGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
ENSMUST00000136551.3
CDS CCA 72 bp GGTGTGCACCCCGGTAGGCAACGGCGGTGCCCGTGGTaGGGTAGGGGAAACTGGTCACTGCATAGAATTCAG +
Preference number: 6 (lower is better)
Translates to: GVHPGRQRRCPW*GRGNWSLHRIQ
Trigger: CTGAATTCTATGCAGTGACCAGTTTCCCCTACCCCACCACGGGCACCGCCGTTGCCTACCGGGGTGCACACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
ENSMUST00000154746.8
CDS CCA 72 bp ATACACGACCCTGGAAGCAAACGGACAAGAGAGTGGTaGGAACGCTGGAGAGGTGGGGTAGGCCGGCTCCGG +
Preference number: 6 (lower is better)
Translates to: IHDPGSKRTREW*ERWRGGVGRLR
Trigger: CCGGAGCCGGCCTACCCCACCTCTCCAGCGTTCCCACCACTCTCTTGTCCGTTTGCTTCCAGGGTCGTGTAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000117731.8
CDS GCA 72 bp GGCTGCTGCTTCTCCGTGGGGTCGGAAGGGTGGAGTTaGTGGTTGTCTGTCTGTGCTGCTTCATCTGCCTGC +
Preference number: 6 (lower is better)
Translates to: GCCFSVGSEGWS*WLSVCAASSAC
Trigger: GCAGGCAGATGAAGCAGCACAGACAGACAACCAGCAACTCCACCCTTCCGACCCCACGGAGAAGCAGCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
ENSMUST00000136551.3
CDS CCA 72 bp TGCTGCTTCTCCGTGGGGTCGGAAGGGTGGAGTTGCTaGTTGTCTGTCTGTGCTGCTTCATCTGCCTGCGGC +
Preference number: 6 (lower is better)
Translates to: CCFSVGSEGWSC*LSVCAASSACG
Trigger: GCCGCAGGCAGATGAAGCAGCACAGACAGACAACCAGCAACTCCACCCTTCCGACCCCACGGAGAAGCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
ENSMUST00000136551.3
CDS CCA 72 bp CTGATACACGACCCTGGAAGCAAACGGACAAGAGAGTaGTGGGAACGCTGGAGAGGTGGGGTAGGCCGGCTC +
Preference number: 6 (lower is better)
Translates to: LIHDPGSKRTRE*WERWRGGVGRL
Trigger: GAGCCGGCCTACCCCACCTCTCCAGCGTTCCCACCACTCTCTTGTCCGTTTGCTTCCAGGGTCGTGTATCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000117731.8
CDS CAA 72 bp GGGCTGCTGCTTCTCCGTGGGGTCGGAAGGGTGGAGTaGCTGGTTGTCTGTCTGTGCTGCTTCATCTGCCTG +
Preference number: 6 (lower is better)
Translates to: GLLLLRGVGRVE*LVVCLCCFICL
Trigger: CAGGCAGATGAAGCAGCACAGACAGACAACCAGCAACTCCACCCTTCCGACCCCACGGAGAAGCAGCAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
ENSMUST00000136551.3
CDS GCA 72 bp TCGGCAGAGGCTAGCCATGGTTCCGATGCTGTAGGTTaGTGTGGGGCCGATGGTGTGATGGTAAGGATCAGC +
Preference number: 6 (lower is better)
Translates to: SAEASHGSDAVG*CGADGVMVRIS
Trigger: GCTGATCCTTACCATCACACCATCGGCCCCACAGCAACCTACAGCATCGGAACCATGGCTAGCCTCTGCCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS CCA 72 bp TGGAGACATGTAGTCGTTTGGGCTGCTGCTTCTCCGTaGGGTCGGAAGGGTGGAGTTGCTGGTTGTCTGTCT +
Preference number: 6 (lower is better)
Translates to: WRHVVVWAAASP*GRKGGVAGCLS
Trigger: AGACAGACAACCAGCAACTCCACCCTTCCGACCCCACGGAGAAGCAGCAGCCCAAACGACTACATGTCTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
ENSMUST00000136551.3
CDS CCA 72 bp CCATGGTTCCGATGCTGTAGGTTGCTGTGGGGCCGATaGTGTGATGGTAAGGATCAGCAGCGGCATAGACTC +
Preference number: 6 (lower is better)
Translates to: PWFRCCRLLWGR*CDGKDQQRHRL
Trigger: GAGTCTATGCCGCTGCTGATCCTTACCATCACACCATCGGCCCCACAGCAACCTACAGCATCGGAACCATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017576.11
ENSMUST00000120061.8
CDS GCA 72 bp AGCGGCATAGACTCTACCATAACTGTCACTGTAGGCTaGTGCGGTGGCGGCTGCTGGCTGAGCATATCTGTA +
Preference number: 6 (lower is better)
Translates to: SGIDSTITVTVG*CGGGCWLSISV
Trigger: TACAGATATGCTCAGCCAGCAGCCGCCACCGCAGCAGCCTACAGTGACAGTTATGGTAGAGTCTATGCCGCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
ENSMUST00000120061.8
CDS CCA 72 bp ACATGGTTCCGATGCTGTAGGTTGCTGTGGGGCCGATaGTGTGATGGTAAGGATCAGCAGCGGCATAGACTC +
Preference number: 6 (lower is better)
Translates to: TWFRCCRLLWGR*CDGKDQQRHRL
Trigger: GAGTCTATGCCGCTGCTGATCCTTACCATCACACCATCGGCCCCACAGCAACCTACAGCATCGGAACCATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069343.12
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000117731.8
CDS CCA 72 bp CAAGCGTTTGCTCCAGTGCCGCTCCATAAGTTGGAATaGGGGGTGGAGGTGGTGCAGCTCGAAATGTATTAT +
Preference number: 6 (lower is better)
Translates to: QAFAPVPLHKLE*GVEVVQLEMYY
Trigger: ATAATACATTTCGAGCTGCACCACCTCCACCCCCCATTCCAACTTATGGAGCGGCACTGGAGCAAACGCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000017576.11
ENSMUST00000069343.12
ENSMUST00000117731.8
ENSMUST00000154746.8
CDS CCA 72 bp ATCCATCCTGATACACGACCGCTCCATAAGTTGGAATaGGGGGTGGAGGTGGTGCAGCTCGAAATGTATTAT +
Preference number: 6 (lower is better)
Translates to: IHPDTRPLHKLE*GVEVVQLEMYY
Trigger: ATAATACATTTCGAGCTGCACCACCTCCACCCCCCATTCCAACTTATGGAGCGGTCGTGTATCAGGATGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000103023.8
ENSMUST00000106278.9
ENSMUST00000120061.8