Pregenerated sensors for RBBP9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027428Ensembl transcript IDs: ENSMUST00000028915.6
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGAAGAGGGCGTCAGATCCCATTACAGAGCCACCATGTCGTTTCTaGGAATTGAAATCTGGTCTTCTAGAAAAAGGTTCTTTTGAGGAC | + |
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Preference number: 1 (lower is better) Translates to: QKRASDPITEPPCRF*ELKSGLLEKGSFED Trigger: GTCCTCAAAAGAACCTTTTTCTAGAAGACCAGATTTCAATTCCCAGAAACGACATGGTGGCTCTGTAATGGGATCTGACGCCCTCTTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR GCA 90 bp | AAAGGGGTTGTTTATGTGAGTGAATATGAGAAGACTCGGCAGTGTTaGTTGAATACTCTCTACAAGAGGCTGAACTCTATAGAATTAACC | + |
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Preference number: 1 (lower is better) Translates to: KGVVYVSEYEKTRQC*LNTLYKRLNSIELT Trigger: GGTTAATTCTATAGAGTTCAGCCTCTTGTAGAGAGTATTCAAGCAACACTGCCGAGTCTTCTCATATTCACTCACATAAACAACCCCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR TCA 90 bp | TCGTTTCTGGGAATTGAAATCTGGTCTTCTAGAAAAAGGTTCTTTTaGGGACACTTAGAACTTAATAACACAGTACAGGTTGCTCCCTTG | + |
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Preference number: 1 (lower is better) Translates to: SFLGIEIWSSRKRFF*GHLELNNTVQVAPL Trigger: CAAGGGAGCAACCTGTACTGTGTTATTAAGTTCTAAGTGTCCTCAAAAGAACCTTTTTCTAGAAGACCAGATTTCAATTCCCAGAAACGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR GCA 90 bp | AAATGTTTACCTCCAACTCACAAATGGATGACCTGGTCTTTATCTTaGAGCATTTGCAAATCTTTGAATTACAATGCTGTTGCCAGCTAC | + |
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Preference number: 1 (lower is better) Translates to: KCLPPTHKWMTWSLS*SICKSLNYNAVASY Trigger: GTAGCTGGCAACAGCATTGTAATTCAAAGATTTGCAAATGCTGCAAGATAAAGACCAGGTCATCCATTTGTGAGTTGGAGGTAAACATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR CCA 90 bp | TGCTTGAATACTCTCTACAAGAGGCTGAACTCTATAGAATTAACCTaGCATAGTTTATTTTATGTATGTGAGTACACGGTGTCTTCAGAC | + |
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Preference number: 1 (lower is better) Translates to: CLNTLYKRLNSIELT*HSLFYVCEYTVSSD Trigger: GTCTGAAGACACCGTGTACTCACATACATAAAATAAACTATGCCAGGTTAATTCTATAGAGTTCAGCCTCTTGTAGAGAGTATTCAAGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR-3UTR CCA 90 bp | AGAAAGACCTGGGGATGTAGTGGGGTCAGGGATGTCGGTGATCAAGACCCAAGTAAAGTGCTGGTAACTTaGTGTGAGTGTTCAAACGGG | + |
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Preference number: 2 (lower is better) Translates to: RKTWGCSGVRDVGDQDPSKVLVT*CECSNG Trigger: CCCGTTTGAACACTCACACCAAGTTACCAGCACTTT...ACTTGGGTCTTGATCACCGACATCCCTGACCCCACTACATCCCCAGGTCTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR-3UTR CCA 90 bp | GTCTCTCTCAACTTGTCAGAAAGACCTGGGGATGTAGTGGGGTCAGGGATGTCGCACGTTTATAAGTACTaGGGCCTCAGAAGTAGATTG | + |
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Preference number: 2 (lower is better) Translates to: VSLNLSERPGDVVGSGMSHVYKY*GLRSRL Trigger: CAATCTACTTCTGAGGCCCCAGTACTTATAAACGTG...CGACATCCCTGACCCCACTACATCCCCAGGTCTTTCTGACAAGTTGAGAGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR CAA 90 bp | TGTGAGATTACTCTCTTGAGCCAGCCTGAAAGACCAGCTAGAGTTTaGAGTTCTAATAACATTCGGGGCCTCGAATCATGTTTTCTTTCT | + |
|
Preference number: 2 (lower is better) Translates to: CEITLLSQPERPARV*SSNNIRGLESCFLS Trigger: AGAAAGAAAACATGATTCGAGGCCCCGAATGTTATTAGAACTCAAAACTCTAGCTGGTCTTTCAGGCTGGCTCAAGAGAGTAATCTCACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR CAA 90 bp | GGGGTTGTTTATGTGAGTGAATATGAGAAGACTCGGCAGTGTTGCTaGAATACTCTCTACAAGAGGCTGAACTCTATAGAATTAACCTGG | + |
|
Preference number: 2 (lower is better) Translates to: GVVYVSEYEKTRQCC*NTLYKRLNSIELTW Trigger: CCAGGTTAATTCTATAGAGTTCAGCCTCTTGTAGAGAGTATTCAAGCAACACTGCCGAGTCTTCTCATATTCACTCACATAAACAACCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR-3UTR GCA 90 bp | AAAGGGGTTGTTTATGTGAGTGAATATGAGAAGACTCGGCAGTGTTGCTTGAATGCTGGTGAGAAGAGTTaGTGTTATTATTCTCCTCCA | + |
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Preference number: 2 (lower is better) Translates to: KGVVYVSEYEKTRQCCLNAGEKS*CYYSPP Trigger: TGGAGGAGAATAATAACAGCAACTCTTCTCACCAGC...ATTCAAGCAACACTGCCGAGTCTTCTCATATTCACTCACATAAACAACCCCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR-3UTR CCA 90 bp | AAAGGGGTTGTTTATGTGAGTGAATATGAGAAGACTCGGCAGTGTTGCTTGAATCCTCCAACTCACAAATaGATGACCTGGTCTTTATCT | + |
|
Preference number: 2 (lower is better) Translates to: KGVVYVSEYEKTRQCCLNPPTHK*MTWSLS Trigger: AGATAAAGACCAGGTCATCCATTTGTGAGTTGGAGG...ATTCAAGCAACACTGCCGAGTCTTCTCATATTCACTCACATAAACAACCCCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR CAA 90 bp | ATCCACCTTCCTCACGTTTATAAGTACTGGGGCCTCAGAAGTAGATaGCATCTTGCTAAACCTATTGAGTTAAAATTTGGAATGAGACTC | + |
|
Preference number: 2 (lower is better) Translates to: IHLPHVYKYWGLRSR*HLAKPIELKFGMRL Trigger: GAGTCTCATTCCAAATTTTAACTCAATAGGTTTAGCAAGATGCAATCTACTTCTGAGGCCCCAGTACTTATAAACGTGAGGAAGGTGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR-3UTR CCA 90 bp | AAAGGGGTTGTTTATGTGAGTGAATATGAGAAGACTCGGCAGTGTTGCTTGAATCACAAATGGATGACCTaGTCTTTATCTTGCAGCATT | + |
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Preference number: 2 (lower is better) Translates to: KGVVYVSEYEKTRQCCLNHKWMT*SLSCSI Trigger: AATGCTGCAAGATAAAGACCAGGTCATCCATTTGTG...ATTCAAGCAACACTGCCGAGTCTTCTCATATTCACTCACATAAACAACCCCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR CAA 90 bp | AAAATGTTTACCTCCAACTCACAAATGGATGACCTGGTCTTTATCTaGCAGCATTTGCAAATCTTTGAATTACAATGCTGTTGCCAGCTA | + |
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Preference number: 2 (lower is better) Translates to: KMFTSNSQMDDLVFI*QHLQIFELQCCCQL Trigger: TAGCTGGCAACAGCATTGTAATTCAAAGATTTGCAAATGCTGCAAGATAAAGACCAGGTCATCCATTTGTGAGTTGGAGGTAAACATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR-3UTR CAA 90 bp | AAGACCTGGGGATGTAGTGGGGTCAGGGATGTCGGTGATCAAGACCCAAGTGTGGAGACCTGGGCTGTCTaGTTCTTTCTTTTCTTAGAC | + |
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Preference number: 3 (lower is better) Translates to: KTWGCSGVRDVGDQDPSVETWAV*FFLFLD Trigger: GTCTAAGAAAAGAAAGAACAAGACAGCCCAGGTCTC...CACACTTGGGTCTTGATCACCGACATCCCTGACCCCACTACATCCCCAGGTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR TCA 72 bp | CAGGCTATGCAGATATCTGCCCATACAGCTCCTTACTaGACATCCATAGATGTCAGTCTCTCTCAACTTGTC | + |
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Preference number: 3 (lower is better) Translates to: QAMQISAHTAPY*TSIDVSLSQLV Trigger: GACAAGTTGAGAGAGACTGACATCTATGGATGTTCAGTAAGGAGCTGTATGGGCAGATATCTGCATAGCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR CCA 72 bp | GCGTCAGATCCCATTACAGAGCCACCATGTCGTTTCTaGGAATTGAAATCTGGTCTTCTAGAAAAAGGTTCT | + |
|
Preference number: 3 (lower is better) Translates to: ASDPITEPPCRF*ELKSGLLEKGS Trigger: AGAACCTTTTTCTAGAAGACCAGATTTCAATTCCCAGAAACGACATGGTGGCTCTGTAATGGGATCTGACGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR-3UTR CAA 90 bp | TGCAGCATTTGCAAATCTTTGAATTACAATGCTGTTGCCAGCTACCATAATTCATGTGAGATTACTCTCTaGAGCCAGCCTGAAAGACCA | + |
|
Preference number: 3 (lower is better) Translates to: CSICKSLNYNAVASYHNSCEITL*SQPERP Trigger: TGGTCTTTCAGGCTGGCTCAAGAGAGTAATCTCACA...TGAATTATGGTAGCTGGCAACAGCATTGTAATTCAAAGATTTGCAAATGCTGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR GCA 72 bp | GTTTATGTGAGTGAATATGAGAAGACTCGGCAGTGTTaGTTGAATACTCTCTACAAGAGGCTGAACTCTATA | + |
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Preference number: 3 (lower is better) Translates to: VYVSEYEKTRQC*LNTLYKRLNSI Trigger: TATAGAGTTCAGCCTCTTGTAGAGAGTATTCAAGCAACACTGCCGAGTCTTCTCATATTCACTCACATAAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR GCA 72 bp | CCTCCAACTCACAAATGGATGACCTGGTCTTTATCTTaGAGCATTTGCAAATCTTTGAATTACAATGCTGTT | + |
|
Preference number: 3 (lower is better) Translates to: PPTHKWMTWSLS*SICKSLNYNAV Trigger: AACAGCATTGTAATTCAAAGATTTGCAAATGCTGCAAGATAAAGACCAGGTCATCCATTTGTGAGTTGGAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR TCA 72 bp | GGAATTGAAATCTGGTCTTCTAGAAAAAGGTTCTTTTaGGGACACTTAGAACTTAATAACACAGTACAGGTT | + |
|
Preference number: 3 (lower is better) Translates to: GIEIWSSRKRFF*GHLELNNTVQV Trigger: AACCTGTACTGTGTTATTAAGTTCTAAGTGTCCTCAAAAGAACCTTTTTCTAGAAGACCAGATTTCAATTCC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR CCA 90 bp | AAGACCTGGGGATGTAGTGGGGTCAGGGATGTCGGTGATCAAGACCCAAGTGTGCGTACCAGCCGTGGGTaGCCACATCCCCGCCTCCGT | + |
|
Preference number: 4 (lower is better) Translates to: KTWGCSGVRDVGDQDPSVRTSRG*PHPRLR Trigger: ACGGAGGCGGGGATGTGGCCACCCACGGCTGGTACG...CACACTTGGGTCTTGATCACCGACATCCCTGACCCCACTACATCCCCAGGTCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR CCA 90 bp | GTCTCTCTCAACTTGTCAGAAAGACCTGGGGATGTAGTGGGGTCAGGGATGTCGCAGCCGTACCAGCCGTaGGTGGCCACATCCCCGCCT | + |
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Preference number: 4 (lower is better) Translates to: VSLNLSERPGDVVGSGMSQPYQP*VATSPP Trigger: AGGCGGGGATGTGGCCACCCACGGCTGGTACGGCTG...CGACATCCCTGACCCCACTACATCCCCAGGTCTTTCTGACAAGTTGAGAGAGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR TCA 90 bp | GTCTCTCTCAACTTGTCAGAAAGACCTGGGGATGTAGTGGGGTCAGGGATGTCGGAGGGCAGTTGGCCTTaGTCTTCTCCCACTGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: VSLNLSERPGDVVGSGMSEGSWP*SSPTAR Trigger: CCTGGCAGTGGGAGAAGATCAAGGCCAACTGCCCTC...CGACATCCCTGACCCCACTACATCCCCAGGTCTTTCTGACAAGTTGAGAGAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR GCA 90 bp | GTCTCTCTCAACTTGTCAGAAAGACCTGGGGATGTAGTGGGGTCAGGGATGTCGCCCGGGAACAATCACTaGCTTGTTGGGGGACGCCAT | + |
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Preference number: 4 (lower is better) Translates to: VSLNLSERPGDVVGSGMSPGNNH*LVGGRH Trigger: ATGGCGTCCCCCAACAAGGCAGTGATTGTTCCCGGG...CGACATCCCTGACCCCACTACATCCCCAGGTCTTTCTGACAAGTTGAGAGAGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR GCA 90 bp | GTCTCTCTCAACTTGTCAGAAAGACCTGGGGATGTAGTGGGGTCAGGGATGTCGTTGATCTTCTCCCACTaGCAGGGGCGGCTGAAGTAC | + |
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Preference number: 4 (lower is better) Translates to: VSLNLSERPGDVVGSGMSLIFSH*QGRLKY Trigger: GTACTTCAGCCGCCCCTGGCAGTGGGAGAAGATCAA...CGACATCCCTGACCCCACTACATCCCCAGGTCTTTCTGACAAGTTGAGAGAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR GCA 90 bp | AAGACCTGGGGATGTAGTGGGGTCAGGGATGTCGGTGATCAAGACCCAAGTGTGGTCTTCTCGTCACAGTaGAGCTCTGTCTCCATGAAG | + |
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Preference number: 4 (lower is better) Translates to: KTWGCSGVRDVGDQDPSVVFSSQ*SSVSMK Trigger: CTTCATGGAGACAGAGCTGCACTGTGACGAGAAGAC...CACACTTGGGTCTTGATCACCGACATCCCTGACCCCACTACATCCCCAGGTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR CCA 90 bp | GTCTCTCTCAACTTGTCAGAAAGACCTGGGGATGTAGTGGGGTCAGGGATGTCGATGGCCCCGGAACTGTaGCCTATGATGATGGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: VSLNLSERPGDVVGSGMSMAPEL*PMMMVF Trigger: GAAGACCATCATCATAGGCCACAGTTCCGGGGCCAT...CGACATCCCTGACCCCACTACATCCCCAGGTCTTTCTGACAAGTTGAGAGAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR GCA 90 bp | AAGACCTGGGGATGTAGTGGGGTCAGGGATGTCGGTGATCAAGACCCAAGTGTGGCTGAAGTACCCACTTaGACGCTCATTTTCATCTCC | + |
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Preference number: 4 (lower is better) Translates to: KTWGCSGVRDVGDQDPSVAEVPT*TLIFIS Trigger: GGAGATGAAAATGAGCGTGCAAGTGGGTACTTCAGC...CACACTTGGGTCTTGATCACCGACATCCCTGACCCCACTACATCCCCAGGTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR TCA 90 bp | CTAGTGCTGGTGAGAAGAGTTGCTGTTATTATTCTCCTCCACCCTGGCTTGTTAACGAGAGCATATACCTaGTGTGTCTCTGCATACCTC | + |
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Preference number: 4 (lower is better) Translates to: LVLVRRVAVIILLHPGLLTRAYT*CVSAYL Trigger: GAGGTATGCAGAGACACATCAGGTATATGCTCTCGT...TAACAAGCCAGGGTGGAGGAGAATAATAACAGCAACTCTTCTCACCAGCACTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR TCA 90 bp | AAAGGACATGAGTGCTTATGTGTCTATATTTTAGTACTTCCCCATGACCTAATCGCAGCTCTGTCTCCATaGAGGGCAGCCAGATGCTCT | + |
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Preference number: 4 (lower is better) Translates to: KGHECLCVYILVLPHDLIAALSP*RAARCS Trigger: AGAGCATCTGGCTGCCCTTCATGGAGACAGAGCTGC...GATTAGGTCATGGGGAAGTACTAAAATATAGACACATAAGCACTCATGTCCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR CCA 90 bp | AAAGGACATGAGTGCTTATGTGTCTATATTTTAGTACTTCCCCATGACCTAATCTCTCTGCATACCTCATaGCTGCGATGGCCCCGGAAC | + |
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Preference number: 4 (lower is better) Translates to: KGHECLCVYILVLPHDLISLHTS*LRWPRN Trigger: GTTCCGGGGCCATCGCAGCCATGAGGTATGCAGAGA...GATTAGGTCATGGGGAAGTACTAAAATATAGACACATAAGCACTCATGTCCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR TCA 90 bp | AAAGGGGTTGTTTATGTGAGTGAATATGAGAAGACTCGGCAGTGTTGCTTGAATCCAAACTGTACAATGTaGGGGCAGTTGGCCTTGATC | + |
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Preference number: 4 (lower is better) Translates to: KGVVYVSEYEKTRQCCLNPNCTM*GQLALI Trigger: GATCAAGGCCAACTGCCCTCACATTGTACAGTTTGG...ATTCAAGCAACACTGCCGAGTCTTCTCATATTCACTCACATAAACAACCCCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR CAA 72 bp | AAAATTTGGAATGAGACTCAGGAGACCTGGGCTGTCTaGTTCTTTCTTTTCTTAGACAGGGTCAAGCTAGCC | + |
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Preference number: 4 (lower is better) Translates to: KIWNETQETWAV*FFLFLDRVKLA Trigger: GGCTAGCTTGACCCTGTCTAAGAAAAGAAAGAACAAGACAGCCCAGGTCTCCTGAGTCTCATTCCAAATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR GCA 90 bp | AAAGGGGTTGTTTATGTGAGTGAATATGAGAAGACTCGGCAGTGTTGCTTGAATGGCGTCCAGCCTATCTaGTACTTCTTGTTGTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: KGVVYVSEYEKTRQCCLNGVQPI*YFLLFL Trigger: AAGGAACAACAAGAAGTAGCAGATAGGCTGGACGCC...ATTCAAGCAACACTGCCGAGTCTTCTCATATTCACTCACATAAACAACCCCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR CAA 72 bp | TATGTGAGTGAATATGAGAAGACTCGGCAGTGTTGCTaGAATACTCTCTACAAGAGGCTGAACTCTATAGAA | + |
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Preference number: 4 (lower is better) Translates to: YVSEYEKTRQCC*NTLYKRLNSIE Trigger: TTCTATAGAGTTCAGCCTCTTGTAGAGAGTATTCAAGCAACACTGCCGAGTCTTCTCATATTCACTCACATA 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR CAA 72 bp | CCTCACGTTTATAAGTACTGGGGCCTCAGAAGTAGATaGCATCTTGCTAAACCTATTGAGTTAAAATTTGGA | + |
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Preference number: 4 (lower is better) Translates to: PHVYKYWGLRSR*HLAKPIELKFG Trigger: TCCAAATTTTAACTCAATAGGTTTAGCAAGATGCAATCTACTTCTGAGGCCCCAGTACTTATAAACGTGAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR CAA 72 bp | ATGACCTGGTCTTTATCTTGCAGCATTTGCAAATCTTaGAATTACAATGCTGTTGCCAGCTACCATAATTCA | + |
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Preference number: 4 (lower is better) Translates to: MTWSLSCSICKS*NYNAVASYHNS Trigger: TGAATTATGGTAGCTGGCAACAGCATTGTAATTCAAAGATTTGCAAATGCTGCAAGATAAAGACCAGGTCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| 3UTR CAA 72 bp | CACTTAGAACTTAATAACACAGTACAGGTTGCTCCCTaGTCTTCCACCTTTACTATTATGTTCATTTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: HLELNNTVQVAP*SSTFTIMFILV Trigger: AACCAAAATGAACATAATAGTAAAGGTGGAAGACAAGGGAGCAACCTGTACTGTGTTATTAAGTTCTAAGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS GCA 90 bp | TGTGTATGCAGACACCAATACGAGAGCATATACCTGATGTGTCTCTaGATACCTCATGGCTGCGATGGCCCCGGAACTGTGGCCTATGAT | + |
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Preference number: 5 (lower is better) Translates to: CVCRHQYESIYLMCL*IPHGCDGPGTVAYD Trigger: ATCATAGGCCACAGTTCCGGGGCCATCGCAGCCATGAGGTATGCAGAGACACATCAGGTATATGCTCTCGTATTGGTGTCTGCATACACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR CAA 90 bp | AGAAAGACCTGGGGATGTAGTGGGGTCAGGGATGTCGGTGATCAAGACCCAAGTCCTATCTGCTACTTCTaGTTGTTCCTTCCAGGGAAG | + |
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Preference number: 5 (lower is better) Translates to: RKTWGCSGVRDVGDQDPSPICYF*LFLPGK Trigger: CTTCCCTGGAAGGAACAACAAGAAGTAGCAGATAGG...ACTTGGGTCTTGATCACCGACATCCCTGACCCCACTACATCCCCAGGTCTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS GCA 90 bp | GTGACCACGGTCAGTGAATTTGTACAATTTGGCGTCCAGCCTATCTaGTACTTCTTGTTGTTCCTTCCAGGGAAGGAAGGGGTCATCAGT | + |
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Preference number: 5 (lower is better) Translates to: VTTVSEFVQFGVQPI*YFLLFLPGKEGVIS Trigger: ACTGATGACCCCTTCCTTCCCTGGAAGGAACAACAAGAAGTAGCAGATAGGCTGGACGCCAAATTGTACAAATTCACTGACCGTGGTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS TCA 90 bp | GCGGCTGAAGTACCCACTTGCACGCTCATTTTCATCTCCCAAGTCTaGTGTGTATGCAGACACCAATACGAGAGCATATACCTGATGTGT | + |
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Preference number: 5 (lower is better) Translates to: AAEVPTCTLIFISQV*CVCRHQYESIYLMC Trigger: ACACATCAGGTATATGCTCTCGTATTGGTGTCTGCATACACATCAGACTTGGGAGATGAAAATGAGCGTGCAAGTGGGTACTTCAGCCGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR CAA 90 bp | AAAGGGGTTGTTTATGTGAGTGAATATGAGAAGACTCGGCAGTGTTGCTTGAATATCTGCTACTTCTTGTaGTTCCTTCCAGGGAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: KGVVYVSEYEKTRQCCLNICYFL*FLPGKE Trigger: TTCCTTCCCTGGAAGGAACAACAAGAAGTAGCAGAT...ATTCAAGCAACACTGCCGAGTCTTCTCATATTCACTCACATAAACAACCCCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS-3UTR CAA 90 bp | TGCAGCATTTGCAAATCTTTGAATTACAATGCTGTTGCCAGCTACCATAATTCACCACGGTCAGTGAATTaGTACAATTTGGCGTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: CSICKSLNYNAVASYHNSPRSVN*YNLASS Trigger: GCTGGACGCCAAATTGTACAAATTCACTGACCGTGG...TGAATTATGGTAGCTGGCAACAGCATTGTAATTCAAAGATTTGCAAATGCTGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS CCA 72 bp | TCTGCATACCTCATGGCTGCGATGGCCCCGGAACTGTaGCCTATGATGATGGTCTTCTCGTCACAGTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: SAYLMAAMAPEL*PMMMVFSSQCS Trigger: GCTGCACTGTGACGAGAAGACCATCATCATAGGCCACAGTTCCGGGGCCATCGCAGCCATGAGGTATGCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS TCA 72 bp | AGGAAGGGGTCATCAGTAGAGCCAAACTGTACAATGTaGGGGCAGTTGGCCTTGATCTTCTCCCACTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: RKGSSVEPNCTM*GQLALIFSHCQ Trigger: CTGGCAGTGGGAGAAGATCAAGGCCAACTGCCCTCACATTGTACAGTTTGGCTCTACTGATGACCCCTTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS GCA 72 bp | AGACACCAATACGAGAGCATATACCTGATGTGTCTCTaGATACCTCATGGCTGCGATGGCCCCGGAACTGTG | + |
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Preference number: 6 (lower is better) Translates to: RHQYESIYLMCL*IPHGCDGPGTV Trigger: CACAGTTCCGGGGCCATCGCAGCCATGAGGTATGCAGAGACACATCAGGTATATGCTCTCGTATTGGTGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS TCA 72 bp | GATGTGTATGCAGACACCAATACGAGAGCATATACCTaGTGTGTCTCTGCATACCTCATGGCTGCGATGGCC | + |
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Preference number: 6 (lower is better) Translates to: DVYADTNTRAYT*CVSAYLMAAMA Trigger: GGCCATCGCAGCCATGAGGTATGCAGAGACACATCAGGTATATGCTCTCGTATTGGTGTCTGCATACACATC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS CAA 90 bp | AGTGAATTTGTACAATTTGGCGTCCAGCCTATCTGCTACTTCTTGTaGTTCCTTCCAGGGAAGGAAGGGGTCATCAGTAGAGCCAAACTG | + |
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Preference number: 6 (lower is better) Translates to: SEFVQFGVQPICYFL*FLPGKEGVISRAKL Trigger: CAGTTTGGCTCTACTGATGACCCCTTCCTTCCCTGGAAGGAACAACAAGAAGTAGCAGATAGGCTGGACGCCAAATTGTACAAATTCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS GCA 72 bp | GTCAGTGAATTTGTACAATTTGGCGTCCAGCCTATCTaGTACTTCTTGTTGTTCCTTCCAGGGAAGGAAGGG | + |
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Preference number: 6 (lower is better) Translates to: VSEFVQFGVQPI*YFLLFLPGKEG Trigger: CCCTTCCTTCCCTGGAAGGAACAACAAGAAGTAGCAGATAGGCTGGACGCCAAATTGTACAAATTCACTGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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| CDS TCA 72 bp | GTACCCACTTGCACGCTCATTTTCATCTCCCAAGTCTaGTGTGTATGCAGACACCAATACGAGAGCATATAC | + |
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Preference number: 6 (lower is better) Translates to: VPTCTLIFISQV*CVCRHQYESIY Trigger: GTATATGCTCTCGTATTGGTGTCTGCATACACATCAGACTTGGGAGATGAAAATGAGCGTGCAAGTGGGTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028915.6 |
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