RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RBBP5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026439

Ensembl transcript IDs: ENSMUST00000027700.15, ENSMUST00000187505.7, ENSMUST00000188575.7, ENSMUST00000189786.3, ENSMUST00000190825.7, ENSMUST00000190997.7

Found 265 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAGTCACTCGAGGACATGCATGGAGGACGGAAGGCAAGCAGGACATaGGAAATGACACGTCCAAAGATGGGACTCCAACAGTTAGGTGAA +
Preference number: 1 (lower is better)
Translates to: KSLEDMHGGRKASRT*EMTRPKMGLQQLGE
Trigger: TTCACCTAACTGTTGGAGTCCCATCTTTGGACGTGTCATTTCCCATGTCCTGCTTGCCTTCCGTCCTCCATGCATGTCCTCGAGTGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR CCA 90 bp CCCGTGAGCCACTTACCAATCACAACCATTGGTCTCACTCACACTTaGAAGCAGCACAGGAGCAACAGAACTAGAAACTTCCAGCGTGTC +
Preference number: 1 (lower is better)
Translates to: PVSHLPITTIGLTHT*KQHRSNRTRNFQRV
Trigger: GACACGCTGGAAGTTTCTAGTTCTGTTGCTCCTGTGCTGCTTCCAAGTGTGAGTGAGACCAATGGTTGTGATTGGTAAGTGGCTCACGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR TCA 90 bp GACAGGTTCTCCACAGGCAAGGATTTAAGGAACGAACCTCATCTTTaGTTTGAAGTGGGCTGCTGTTGCTTTGATTTGGGGGTGGAGGTC +
Preference number: 1 (lower is better)
Translates to: DRFSTGKDLRNEPHL*FEVGCCCFDLGVEV
Trigger: GACCTCCACCCCCAAATCAAAGCAACAGCAGCCCACTTCAAATCAAAGATGAGGTTCGTTCCTTAAATCCTTGCCTGTGGAGAACCTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
3UTR GCA 90 bp CCTTCCTTTCCTGCCAGTCTGAAATCTTTCGAGCACTTGCTTCTCTaGCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGA +
Preference number: 1 (lower is better)
Translates to: PSFPASLKSFEHLLL*PTFIHNMELQEALG
Trigger: TCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGCTCGAAAGATTTCAGACTGGCAGGAAAGGAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR GCA 90 bp AAAGCCATGATTATTCAAACGGATCTAATACTGGAAAACATGCAATaGAAGGGAACCCCTGATTCTCTAGAGCCCAGCCTCCTGAGCAAA +
Preference number: 1 (lower is better)
Translates to: KAMIIQTDLILENMQ*KGTPDSLEPSLLSK
Trigger: TTTGCTCAGGAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTTTTCCAGTATTAGATCCGTTTGAATAATCATGGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR CCA 90 bp TTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTaGGAGGGGAAAGTTATGAATGAAAGAAACAGAAGATGCATCAGT +
Preference number: 1 (lower is better)
Translates to: FSAQPLYTIWSYRKH*EGKVMNERNRRCIS
Trigger: ACTGATGCATCTTCTGTTTCTTTCATTCATAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR CCA 90 bp ACAGGTAAAGCGATACACAAACTACTGATGATTCTTAGCTGGAGATaGATAAAACTAATCATATCCAAAAGCCATGATTATTCAAACGGA +
Preference number: 1 (lower is better)
Translates to: TGKAIHKLLMILSWR*IKLIISKSHDYSNG
Trigger: TCCGTTTGAATAATCATGGCTTTTGGATATGATTAGTTTTATCCATCTCCAGCTAAGAATCATCAGTAGTTTGTGTATCGCTTTACCTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
3UTR CCA 90 bp GTCAACACAGGTAAAGCGATACACAAACTACTGATGATTCTTAGCTaGAGATGGATAAAACTAATCATATCCAAAAGCCATGATTATTCA +
Preference number: 1 (lower is better)
Translates to: VNTGKAIHKLLMILS*RWIKLIISKSHDYS
Trigger: TGAATAATCATGGCTTTTGGATATGATTAGTTTTATCCATCTCCAGCTAAGAATCATCAGTAGTTTGTGTATCGCTTTACCTGTGTTGAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
3UTR-3UTR CCA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAACCTTCACCTCCTGGGTaGGAGGCAGAGGCCTTTGTT +
Preference number: 2 (lower is better)
Translates to: CRLRASAFLRACLDFCLKPSPPG*EAEAFV
Trigger: AACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGG...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR CCA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTCACTCCTTCACCTCCTaGGTGGGAGGCAGAGGCCTT +
Preference number: 2 (lower is better)
Translates to: ESLFGLLLERKAGPCALLHSFTS*VGGRGL
Trigger: AAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTG...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR CAA 90 bp CGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTaGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTCCATAATTCACTT +
Preference number: 2 (lower is better)
Translates to: RLRASAFLRACLDFC*KGRQGRVLFFHNSL
Trigger: AAGTGAATTATGGAAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR TCA 90 bp TCTACCACAGTACAATGTAATCAACGGGTTTGGCTGTCTGAAGGAGCCTCCACCGGGCTGCTGTTGCTTTaGTTTGGGGGTGGAGGTCTC +
Preference number: 2 (lower is better)
Translates to: STTVQCNQRVWLSEGASTGLLLL*FGGGGL
Trigger: GAGACCTCCACCCCCAAATCAAAGCAACAGCAGCCC...GGTGGAGGCTCCTTCAGACAGCCAAACCCGTTGATTACATTGTACTGTGGTAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR-3UTR CCA 90 bp CATCCCGTGAGCCACTTACCAATCACAACCATTGGTCTCACTCACACTTGGAAGCCTTCACCTCCTGGGTaGGAGGCAGAGGCCTTTGTT +
Preference number: 2 (lower is better)
Translates to: HPVSHLPITTIGLTHTWKPSPPG*EAEAFV
Trigger: AACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGG...CTTCCAAGTGTGAGTGAGACCAATGGTTGTGATTGGTAAGTGGCTCACGGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR-3UTR CCA 90 bp CTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAACCTTCACCTCCTGGGTaGGAGGCAGAGGCCTTTGTT +
Preference number: 2 (lower is better)
Translates to: LCPTFIHNMELQEALGGEPSPPG*EAEAFV
Trigger: AACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGG...TTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR GCA 90 bp GCCAGAGGCGTCACTAACCCTTCGCACACTTGGCTTCCTGACTTTGGATTTTCAGAAGTGGGCTGCTGTTaGTTTGATTTGGGGGTGGAG +
Preference number: 2 (lower is better)
Translates to: ARGVTNPSHTWLPDFGFSEVGCC*FDLGVE
Trigger: CTCCACCCCCAAATCAAAGCAACAGCAGCCCACTTC...TGAAAATCCAAAGTCAGGAAGCCAAGTGTGCGAAGGGTTAGTGACGCCTCTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR-3UTR CCA 90 bp ACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGCACTCCTTCACCTCCTaGGTGGGAGGCAGAGGCCTT +
Preference number: 2 (lower is better)
Translates to: TCFSAQPLYTIWSYRKHWHSFTS*VGGRGL
Trigger: AAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTG...CCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR TCA 90 bp AACATGCAATGCAAGGGAACCCCTGATTCTCTAGAGCCCAGCCTCCTGAGCAAACCTTTCCTGCCAGTCTaGAATCTTTCGAGCACTTGC +
Preference number: 2 (lower is better)
Translates to: NMQCKGTPDSLEPSLLSKPFLPV*NLSSTC
Trigger: GCAAGTGCTCGAAAGATTTCAGACTGGCAGGAAAGG...TTTGCTCAGGAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR GCA 90 bp AGGGAAGGCAGAAACCCCTGCATCAGCTTGCACACCACTGCAGTGTGCTGTACACTGGAAAACATGCAATaGAAGGGAACCCCTGATTCT +
Preference number: 2 (lower is better)
Translates to: REGRNPCISLHTTAVCCTLENMQ*KGTPDS
Trigger: AGAATCAGGGGTTCCCTTGCATTGCATGTTTTCCAG...TGTACAGCACACTGCAGTGGTGTGCAAGCTGATGCAGGGGTTTCTGCCTTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR-3UTR GCA 90 bp TCAGCTTGCACACCACTGCAGTGTGCTGTACAGAGACATGACATGGAGGTAATGGAAGGCAGGGCCGTGTaGTCTTCTTCCATAATTCAC +
Preference number: 2 (lower is better)
Translates to: SACTPLQCAVQRHDMEVMEGRAV*SSSIIH
Trigger: GTGAATTATGGAAGAAGAGCACACGGCCCTGCCTTC...CATTACCTCCATGTCATGTCTCTGTACAGCACACTGCAGTGGTGTGCAAGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR-3UTR TCA 90 bp CTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAACTCCAACAGTTAGGTaGACAAAACACGGGCACTCT +
Preference number: 2 (lower is better)
Translates to: LCPTFIHNMELQEALGGETPTVR*TKHGHS
Trigger: AGAGTGCCCGTGTTTTGTTCACCTAACTGTTGGAGT...TTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR GCA 90 bp GCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGCCTGTTTGGACTTCTaGTTGAAAGGAAGGCAGGGC +
Preference number: 2 (lower is better)
Translates to: ALASLPNLYTQYGATGSTACLDF*LKGRQG
Trigger: GCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGC...AGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR GCA 90 bp CCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAAGTTAAGTCACTCGAGGACATaGATGGAGGACGGAAGGCAA +
Preference number: 2 (lower is better)
Translates to: PNLYTQYGATGSTGRGKLSHSRT*MEDGRQ
Trigger: TTGCCTTCCGTCCTCCATGCATGTCCTCGAGTGACT...TAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR CCA 90 bp GTGAGCCACTTACCAATCACAACCATTGGTCTCACTCACACTTGGAAGCAGCACAAGGCAAGCAGGACATaGGAAATGACACGTCCAAAG +
Preference number: 2 (lower is better)
Translates to: VSHLPITTIGLTHTWKQHKASRT*EMTRPK
Trigger: CTTTGGACGTGTCATTTCCCATGTCCTGCTTGCCTT...GTGCTGCTTCCAAGTGTGAGTGAGACCAATGGTTGTGATTGGTAAGTGGCTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR-3UTR TCA 90 bp GCATTAGCATCCAGATGGAGGGAAATCAAGCCACTTCACACAGGGAAGGCAGAATGCTGTACAGAGACATaGCATGGAGGTAATGTCTAC +
Preference number: 2 (lower is better)
Translates to: ALASRWREIKPLHTGKAECCTET*HGGNVY
Trigger: GTAGACATTACCTCCATGTCATGTCTCTGTACAGCA...TTCTGCCTTCCCTGTGTGAAGTGGCTTGATTTCCCTCCATCTGGATGCTAATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR-3UTR GCA 90 bp AACATGCAATGCAAGGGAACCCCTGATTCTCTAGAGCCCAGCCTCCTGAGCAAAGAAAGAAACAGAAGATaGATCAGTCTTCCTAGGTGC +
Preference number: 2 (lower is better)
Translates to: NMQCKGTPDSLEPSLLSKERNRR*ISLPRC
Trigger: GCACCTAGGAAGACTGATGCATCTTCTGTTTCTTTC...TTTGCTCAGGAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR CCA 90 bp TGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGAAGGCAAGCAGGACATaGGAAATGACACGTCCAAAG +
Preference number: 2 (lower is better)
Translates to: CFSAQPLYTIWSYRKHWEKASRT*EMTRPK
Trigger: CTTTGGACGTGTCATTTCCCATGTCCTGCTTGCCTT...CTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR TCA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGTACCTGATGACAGAGTaGGAAGAACCAAGGGTTCCA +
Preference number: 2 (lower is better)
Translates to: HLLLCPTFIHNMELQEALYLMTE*EEPRVP
Trigger: TGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTA...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR TCA 90 bp GCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTTACCTGATGACAGAGTaGGAAGAACCAAGGGTTCCA +
Preference number: 2 (lower is better)
Translates to: ALASLPNLYTQYGATGSTYLMTE*EEPRVP
Trigger: TGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTA...AGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR TCA 90 bp CATCCCGTGAGCCACTTACCAATCACAACCATTGGTCTCACTCACACTTGGAAGGCACACTTGGCTTCCTaGCTTTGGATTTTCAGAAAA +
Preference number: 2 (lower is better)
Translates to: HPVSHLPITTIGLTHTWKAHLAS*LWIFRK
Trigger: TTTTCTGAAAATCCAAAGTCAGGAAGCCAAGTGTGC...CTTCCAAGTGTGAGTGAGACCAATGGTTGTGATTGGTAAGTGGCTCACGGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR-3UTR GCA 90 bp TCTTTCGAGCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGGCAGGGCCGTGTaGTCTTCTTCCATAATTCAC +
Preference number: 2 (lower is better)
Translates to: SFEHLLLCPTFIHNMELQEGRAV*SSSIIH
Trigger: GTGAATTATGGAAGAAGAGCACACGGCCCTGCCTTC...CTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGCTCGAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR GCA 90 bp TACAGGAAGCACTGGGAGGGGAAAGTTATGAATGAAAGAAACAGAAGATGCATCAGTCACTCGAGGACATaGATGGAGGACGGAAGGCAA +
Preference number: 2 (lower is better)
Translates to: YRKHWEGKVMNERNRRCISHSRT*MEDGRQ
Trigger: TTGCCTTCCGTCCTCCATGCATGTCCTCGAGTGACT...GATGCATCTTCTGTTTCTTTCATTCATAACTTTCCCCTCCCAGTGCTTCCTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR GCA 90 bp CATCCCGTGAGCCACTTACCAATCACAACCATTGGTCTCACTCACACTTGGAAGGAAAGAAACAGAAGATaGATCAGTCTTCCTAGGTGC +
Preference number: 2 (lower is better)
Translates to: HPVSHLPITTIGLTHTWKERNRR*ISLPRC
Trigger: GCACCTAGGAAGACTGATGCATCTTCTGTTTCTTTC...CTTCCAAGTGTGAGTGAGACCAATGGTTGTGATTGGTAAGTGGCTCACGGGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR-3UTR TCA 90 bp TCTTTCGAGCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGACTCCAACAGTTAGGTaGACAAAACACGGGCACTCT +
Preference number: 2 (lower is better)
Translates to: SFEHLLLCPTFIHNMELQTPTVR*TKHGHS
Trigger: AGAGTGCCCGTGTTTTGTTCACCTAACTGTTGGAGT...CTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGCTCGAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR GCA 90 bp AAAAGAACAGCAAATGCAGAGAGAGCCAAGGTGAGAAAGAGAAGGGTAAAAGCTGAGCACTTGCTTCTCTaGCCAACCTTTATACACAAT +
Preference number: 2 (lower is better)
Translates to: KRTANAERAKVRKRRVKAEHLLL*PTFIHN
Trigger: ATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGCTC...AGCTTTTACCCTTCTCTTTCTCACCTTGGCTCTCTCTGCATTTGCTGTTCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
3UTR CCA 72 bp TCTTCACCAGCAACACAACCTGGTGTGAAGTTGAAGTaGGTCAAGCCTCCTGCCGTCTTCGCGCATCCGCGT +
Preference number: 3 (lower is better)
Translates to: SSPATQPGVKLK*VKPPAVFAHPR
Trigger: ACGCGGATGCGCGAAGACGGCAGGAGGCTTGACCCACTTCAACTTCACACCAGGTTGTGTTGCTGGTGAAGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR GCA 72 bp CTTCACACAGGGAAGGCAGAAACCCCTGCATCAGCTTaGACACCACTGCAGTGTGCTGTACAGAGACATGAC +
Preference number: 3 (lower is better)
Translates to: LHTGKAETPASA*TPLQCAVQRHD
Trigger: GTCATGTCTCTGTACAGCACACTGCAGTGGTGTGCAAGCTGATGCAGGGGTTTCTGCCTTCCCTGTGTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR GCA 72 bp AATCAAGCCACTTCACACAGGGAAGGCAGAAACCCCTaGATCAGCTTGCACACCACTGCAGTGTGCTGTACA +
Preference number: 3 (lower is better)
Translates to: NQATSHREGRNP*ISLHTTAVCCT
Trigger: TGTACAGCACACTGCAGTGGTGTGCAAGCTGATGCAGGGGTTTCTGCCTTCCCTGTGTGAAGTGGCTTGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR CCA 72 bp AACAAAACACGGGCACTCTTCACCAGCAACACAACCTaGTGTGAAGTTGAAGTGGGTCAAGCCTCCTGCCGT +
Preference number: 3 (lower is better)
Translates to: NKTRALFTSNTT*CEVEVGQASCR
Trigger: ACGGCAGGAGGCTTGACCCACTTCAACTTCACACCAGGTTGTGTTGCTGGTGAAGAGTGCCCGTGTTTTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR CAA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAAGGGAGGCAGAGGCCTTaGTTTTCAACTAAAGCCAAT +
Preference number: 3 (lower is better)
Translates to: CRLRASAFLRACLDFCLKGRQRP*FSTKAN
Trigger: ATTGGCTTTAGTTGAAAACAAAGGCCTCTGCCTCCC...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR CAA 90 bp CAGAAACCCCTGCATCAGCTTGCACACCACTGCAGTGTGCTGTACAGAGACATGTGCTGTTGCTTTGATTaGGGGGTGGAGGTCTCTCAT +
Preference number: 3 (lower is better)
Translates to: QKPLHQLAHHCSVLYRDMCCCFD*GVEVSH
Trigger: ATGAGAGACCTCCACCCCCAAATCAAAGCAACAGCA...CATGTCTCTGTACAGCACACTGCAGTGGTGTGCAAGCTGATGCAGGGGTTTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR-3UTR CAA 90 bp TGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGTGTTTGGACTTCTGCTaGAAAGGAAGGCAGGGCCGT +
Preference number: 3 (lower is better)
Translates to: CFSAQPLYTIWSYRKHWECLDFC*KGRQGR
Trigger: ACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACA...CTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR TCA 72 bp TCTAATACTGGAAAACATGCAATGCAAGGGAACCCCTaGTTCTCTAGAGCCCAGCCTCCTGAGCAAAGGGCA +
Preference number: 3 (lower is better)
Translates to: SNTGKHAMQGNP*FSRAQPPEQRA
Trigger: TGCCCTTTGCTCAGGAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTTTTCCAGTATTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR CAA 90 bp GTGAGCCACTTACCAATCACAACCATTGGTCTCACTCACACTTGGAAGCAGCACGGGAGGCAGAGGCCTTaGTTTTCAACTAAAGCCAAT +
Preference number: 3 (lower is better)
Translates to: VSHLPITTIGLTHTWKQHGRQRP*FSTKAN
Trigger: ATTGGCTTTAGTTGAAAACAAAGGCCTCTGCCTCCC...GTGCTGCTTCCAAGTGTGAGTGAGACCAATGGTTGTGATTGGTAAGTGGCTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR-3UTR CAA 90 bp CTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAGGGAGGCAGAGGCCTTaGTTTTCAACTAAAGCCAAT +
Preference number: 3 (lower is better)
Translates to: LCPTFIHNMELQEALGGEGRQRP*FSTKAN
Trigger: ATTGGCTTTAGTTGAAAACAAAGGCCTCTGCCTCCC...TTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR CAA 90 bp TGGAAATGGGACACAGCATTAGCATCCAGATGGAGGGAAATCAAGCCACTTCACTTCCTGAGAGCCTGTTaGGACTTCTGCTTGAAAGGA +
Preference number: 3 (lower is better)
Translates to: WKWDTALASRWREIKPLHFLRAC*DFCLKG
Trigger: TCCTTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAA...GTGAAGTGGCTTGATTTCCCTCCATCTGGATGCTAATGCTGTGTCCCATTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR-3UTR CAA 90 bp GTGAGCCACTTACCAATCACAACCATTGGTCTCACTCACACTTGGAAGCAGCACAACCTCATCTTTGATTaGAAGTGGGCTGCTGTTGCT +
Preference number: 3 (lower is better)
Translates to: VSHLPITTIGLTHTWKQHNLIFD*KWAAVA
Trigger: AGCAACAGCAGCCCACTTCAAATCAAAGATGAGGTT...GTGCTGCTTCCAAGTGTGAGTGAGACCAATGGTTGTGATTGGTAAGTGGCTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR GCA 72 bp GCAAATTTTCAGAAAAGAACAAGTCACTCGAGGACATaGATGGAGGACGGAAGGCAAGCAGGACATGGGAAA +
Preference number: 3 (lower is better)
Translates to: ANFQKRTSHSRT*MEDGRQAGHGK
Trigger: TTTCCCATGTCCTGCTTGCCTTCCGTCCTCCATGCATGTCCTCGAGTGACTTGTTCTTTTCTGAAAATTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR CCA 72 bp AGCACTTGCTTCTCTGCCCAACCTTTATACACAATATaGAGCTACAGGAAGCACTGGGAGGGGAAAGTTATG +
Preference number: 3 (lower is better)
Translates to: STCFSAQPLYTI*SYRKHWEGKVM
Trigger: CATAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR TCA 72 bp AGGGTAAAAGCTAAGCAACCTTTCACAGAAAGGAAGTaGGTGAAGACAGTAATGGGGCGTAGCTCCAGGAAA +
Preference number: 3 (lower is better)
Translates to: RVKAKQPFTERK*VKTVMGRSSRK
Trigger: TTTCCTGGAGCTACGCCCCATTACTGTCTTCACTCACTTCCTTTCTGTGAAAGGTTGCTTAGCTTTTACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
3UTR GCA 72 bp CCTGCCAGTCTGAAATCTTTCGAGCACTTGCTTCTCTaGCCAACCTTTATACACAATATGGAGCTACAGGAA +
Preference number: 3 (lower is better)
Translates to: PASLKSFEHLLL*PTFIHNMELQE
Trigger: TTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGCTCGAAAGATTTCAGACTGGCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR GCA 72 bp ATTATTCAAACGGATCTAATACTGGAAAACATGCAATaGAAGGGAACCCCTGATTCTCTAGAGCCCAGCCTC +
Preference number: 3 (lower is better)
Translates to: IIQTDLILENMQ*KGTPDSLEPSL
Trigger: GAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTTTTCCAGTATTAGATCCGTTTGAATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR-3UTR CAA 90 bp TGGAAATGGGACACAGCATTAGCATCCAGATGGAGGGAAATCAAGCCACTTCACCTTGGCTTCCTGACTTaGGATTTTCAGAAAATTTCA +
Preference number: 3 (lower is better)
Translates to: WKWDTALASRWREIKPLHLGFLT*DFQKIS
Trigger: TGAAATTTTCTGAAAATCCAAAGTCAGGAAGCCAAG...GTGAAGTGGCTTGATTTCCCTCCATCTGGATGCTAATGCTGTGTCCCATTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR TCA 72 bp GACATGGAGGTAATGTCTACAAATAAAAACATCCCGTaGGCCACTTACCAATCACAACCATTGGTCTCACTC +
Preference number: 3 (lower is better)
Translates to: DMEVMSTNKNIP*ATYQSQPLVSL
Trigger: GAGTGAGACCAATGGTTGTGATTGGTAAGTGGCTCACGGGATGTTTTTATTTGTAGACATTACCTCCATGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
3UTR CCA 72 bp CAACCTTTATACACAATATGGAGCTACAGGAAGCACTaGGAGGGGAAAGTTATGAATGAAAGAAACAGAAGA +
Preference number: 3 (lower is better)
Translates to: QPLYTIWSYRKH*EGKVMNERNRR
Trigger: TCTTCTGTTTCTTTCATTCATAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR CCA 72 bp GGTAAAGCGATACACAAACTACTGATGATTCTTAGCTaGAGATGGATAAAACTAATCATATCCAAAAGCCAT +
Preference number: 3 (lower is better)
Translates to: GKAIHKLLMILS*RWIKLIISKSH
Trigger: ATGGCTTTTGGATATGATTAGTTTTATCCATCTCCAGCTAAGAATCATCAGTAGTTTGTGTATCGCTTTACC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
3UTR CCA 72 bp GCGATACACAAACTACTGATGATTCTTAGCTGGAGATaGATAAAACTAATCATATCCAAAAGCCATGATTAT +
Preference number: 3 (lower is better)
Translates to: AIHKLLMILSWR*IKLIISKSHDY
Trigger: ATAATCATGGCTTTTGGATATGATTAGTTTTATCCATCTCCAGCTAAGAATCATCAGTAGTTTGTGTATCGC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCCCTCCTGCCAAGGACTaGCTGAGTTCCGCCTGCACT +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVPPAKD*LSSACT
Trigger: AGTGCAGGCGGAACTCAGCCAGTCCTTGGCAGGAGG...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
CDS-3UTR CCA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTCCTCCTGCCAAGGACTaGCTGAGTTCCGCCTGCACT +
Preference number: 4 (lower is better)
Translates to: ESLFGLLLERKAGPCALLPPAKD*LSSACT
Trigger: AGTGCAGGCGGAACTCAGCCAGTCCTTGGCAGGAGG...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
CDS-3UTR TCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCCTGCCAAGGACTGGCTaGGTTCCGCCTGCACTTTAC +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVLPRTG*VPPALY
Trigger: GTAAAGTGCAGGCGGAACTCAGCCAGTCCTTGGCAG...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCAGGTCAGGGCCATGCTaGTGCAGTCCAGAGTCCCAT +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVRSGPC*CSPESH
Trigger: ATGGGACTCTGGACTGCATCAGCATGGCCCTGACCT...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR CAA 72 bp GCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTaGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTCCAT +
Preference number: 4 (lower is better)
Translates to: ASAFLRACLDFC*KGRQGRVLFFH
Trigger: ATGGAAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAATGGGATCCACGCTGGTaGCATCCACTTCCTCATCTT +
Preference number: 4 (lower is better)
Translates to: CRLRASAFLRACLDFCLKWDPRW*HPLPHL
Trigger: AAGATGAGGAAGTGGATGTCACCAGCGTGGATCCCA...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAACTGGGATCCATCTGCTaGAGACTGCCTCTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: CRLRASAFLRACLDFCLKLGSIC*RLPLLL
Trigger: GAGAAGAAGAGGCAGTCTTCAGCAGATGGATCCCAG...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp ATGATTGGCCACGCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGCTCCTCCTGCTTTTaGTCCTTTAGGCCGGCCTGC +
Preference number: 4 (lower is better)
Translates to: MIGHAVQRLPDDRVRRTKGSSCF*SFRPAC
Trigger: GCAGGCCGGCCTAAAGGATCAAAAGCAGGAGGAGCC...CTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGCGTGGCCAATCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCATCCATCAAGGAGCTTaGGACTGCATCCGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVIHQGA*DCIRWR
Trigger: CCTCCACCGGATGCAGTCCCAAGCTCCTTGATGGAT...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCCTGGGATCCATCTGCTaGAGACTGCCTCTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVLGSIC*RLPLLL
Trigger: GAGAAGAAGAGGCAGTCTTCAGCAGATGGATCCCAG...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTCTGGGATCCATCTGCTaGAGACTGCCTCTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: ESLFGLLLERKAGPCALLLGSIC*RLPLLL
Trigger: GAGAAGAAGAGGCAGTCTTCAGCAGATGGATCCCAG...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTATGGGACTGCATCCGGTaGAGGGCCATACGGGTTTTC +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLWDCIR*RAIRVF
Trigger: GAAAACCCGTATGGCCCTCCACCGGATGCAGTCCCA...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp AACATGCAATGCAAGGGAACCCCTGATTCTCTAGAGCCCAGCCTCCTGAGCAAAATCCATCAAGGAGCTTaGGACTGCATCCGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: NMQCKGTPDSLEPSLLSKIHQGA*DCIRWR
Trigger: CCTCCACCGGATGCAGTCCCAAGCTCCTTGATGGAT...TTTGCTCAGGAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCACAGCAGTTCTGAGATaGCTCCTCCTGCCAAGGACT +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVTAVLR*LLLPRT
Trigger: AGTCCTTGGCAGGAGGAGCCATCTCAGAACTGCTGT...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
CDS-3UTR TCA 90 bp AACATGCAATGCAAGGGAACCCCTGATTCTCTAGAGCCCAGCCTCCTGAGCAAATGGGATCCACGCTGGTaGCATCCACTTCCTCATCTT +
Preference number: 4 (lower is better)
Translates to: NMQCKGTPDSLEPSLLSKWDPRW*HPLPHL
Trigger: AAGATGAGGAAGTGGATGTCACCAGCGTGGATCCCA...TTTGCTCAGGAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAATTTCTCTTTACCTTTTaGTCCTTTAGGCCGGCCTGC +
Preference number: 4 (lower is better)
Translates to: CRLRASAFLRACLDFCLKFLFTF*SFRPAC
Trigger: GCAGGCCGGCCTAAAGGATCAAAAGGTAAAGAGAAA...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCTTAGGCCGGCCTGCTTaGTTCTTCTTGGATTTGCCA +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVLGRPA*FFLDLP
Trigger: TGGCAAATCCAAGAAGAAGCAAGCAGGCCGGCCTAA...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTTTAGGCCGGCCTGCTTaGTTCTTCTTGGATTTGCCA +
Preference number: 4 (lower is better)
Translates to: ESLFGLLLERKAGPCALLLGRPA*FFLDLP
Trigger: TGGCAAATCCAAGAAGAAGCAAGCAGGCCGGCCTAA...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp AGGGAAGGCAGAAACCCCTGCATCAGCTTGCACACCACTGCAGTGTGCTGTACATCCTTTAGGCCGGCCTaGTTGCTTCTTCTTGGATTT +
Preference number: 4 (lower is better)
Translates to: REGRNPCISLHTTAVCCTSFRPA*LLLLGF
Trigger: AAATCCAAGAAGAAGCAAGCAGGCCGGCCTAAAGGA...TGTACAGCACACTGCAGTGGTGTGCAAGCTGATGCAGGGGTTTCTGCCTTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCGCAGGAGTTCCCCTCTaGTCCCATGTAAGATCTTCA +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVAGVPL*SHVRSS
Trigger: TGAAGATCTTACATGGGACCAGAGGGGAACTCCTGC...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp AGGGAAGGCAGAAACCCCTGCATCAGCTTGCACACCACTGCAGTGTGCTGTACAACAGCAGTTCTGAGATaGCTCCTCCTGCTTTTGATC +
Preference number: 4 (lower is better)
Translates to: REGRNPCISLHTTAVCCTTAVLR*LLLLLI
Trigger: GATCAAAAGCAGGAGGAGCCATCTCAGAACTGCTGT...TGTACAGCACACTGCAGTGGTGTGCAAGCTGATGCAGGGGTTTCTGCCTTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CCA 90 bp GCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTCCTGCTGCCAAGGACTaGCTGAGTTCCGCCTGCACT +
Preference number: 4 (lower is better)
Translates to: ALASLPNLYTQYGATGSTPAAKD*LSSACT
Trigger: AGTGCAGGCGGAACTCAGCCAGTCCTTGGCAGCAGG...AGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp CATCCCGTGAGCCACTTACCAATCACAACCATTGGTCTCACTCACACTTGGAAGTGGGATCCACGCTGGTaGCATCCACTTCCTCATCTT +
Preference number: 4 (lower is better)
Translates to: HPVSHLPITTIGLTHTWKWDPRW*HPLPHL
Trigger: AAGATGAGGAAGTGGATGTCACCAGCGTGGATCCCA...CTTCCAAGTGTGAGTGAGACCAATGGTTGTGATTGGTAAGTGGCTCACGGGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR TCA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTTTTCTCTTTACCTTTTaGTCCTTTAGGCCGGCCTGC +
Preference number: 4 (lower is better)
Translates to: ESLFGLLLERKAGPCALLFLFTF*SFRPAC
Trigger: GCAGGCCGGCCTAAAGGATCAAAAGGTAAAGAGAAA...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp CCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAAGTTACTGCCAAGGACTGGCTaGGTTCCGCCTGCACTTTAC +
Preference number: 4 (lower is better)
Translates to: PNLYTQYGATGSTGRGKLLPRTG*VPPALY
Trigger: GTAAAGTGCAGGCGGAACTCAGCCAGTCCTTGGCAG...TAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp TCTACCACAGTACAATGTAATCAACGGGTTTGGCTGTCTGAAGGAGCCTCCACCAAGTCCTGCAGCTTCTaGATAGGCTCTGGCTCTCCA +
Preference number: 4 (lower is better)
Translates to: STTVQCNQRVWLSEGASTKSCSF*IGSGSP
Trigger: TGGAGAGCCAGAGCCTATGCAGAAGCTGCAGGACTT...GGTGGAGGCTCCTTCAGACAGCCAAACCCGTTGATTACATTGTACTGTGGTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR GCA 90 bp ATGATTGGCCACGCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGAAGTCCTGCAGCTTCTaGATAGGCTCTGGCTCTCCA +
Preference number: 4 (lower is better)
Translates to: MIGHAVQRLPDDRVRRTKKSCSF*IGSGSP
Trigger: TGGAGAGCCAGAGCCTATGCAGAAGCTGCAGGACTT...CTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGCGTGGCCAATCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTAAAGTCCTGCAGCTTCTaGATAGGCTCTGGCTCTCCA +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLKSCSF*IGSGSP
Trigger: TGGAGAGCCAGAGCCTATGCAGAAGCTGCAGGACTT...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTCTATTCACCAAGTCCTaGAGCTTCTGCATAGGCTCT +
Preference number: 4 (lower is better)
Translates to: ESLFGLLLERKAGPCALLLFTKS*SFCIGS
Trigger: AGAGCCTATGCAGAAGCTGCAGGACTTGGTGAATAG...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTTCCTTTAGGCCGGCCTaGTTGCTTCTTCTTGGATTT +
Preference number: 4 (lower is better)
Translates to: ESLFGLLLERKAGPCALLSFRPA*LLLLGF
Trigger: AAATCCAAGAAGAAGCAAGCAGGCCGGCCTAAAGGA...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp AACATGCAATGCAAGGGAACCCCTGATTCTCTAGAGCCCAGCCTCCTGAGCAAATGGCTGAGTTCCGCCTaGACTTTACCCTTCGTTGAT +
Preference number: 4 (lower is better)
Translates to: NMQCKGTPDSLEPSLLSKWLSSA*TLPFVD
Trigger: ATCAACGAAGGGTAAAGTGCAGGCGGAACTCAGCCA...TTTGCTCAGGAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp CTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAACTTCTGCATAGGCTCTaGCTCTCCATCCCTTCCACA +
Preference number: 4 (lower is better)
Translates to: LCPTFIHNMELQEALGGELLHRL*LSIPST
Trigger: TGTGGAAGGGATGGAGAGCCAGAGCCTATGCAGAAG...TTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTACTTCTGCATAGGCTCTaGCTCTCCATCCCTTCCACA +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLLLHRL*LSIPST
Trigger: TGTGGAAGGGATGGAGAGCCAGAGCCTATGCAGAAG...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp CCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAAGTTATGGGACTGCATCCGGTaGAGGGCCATACGGGTTTTC +
Preference number: 4 (lower is better)
Translates to: PNLYTQYGATGSTGRGKLWDCIR*RAIRVF
Trigger: GAAAACCCGTATGGCCCTCCACCGGATGCAGTCCCA...TAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCTTCTTCTTTGGTGGCTaGGATCCATCTGCTGAAGAC +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVFFFGG*DPSAED
Trigger: GTCTTCAGCAGATGGATCCCAGCCACCAAAGAAGAA...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAATTTAGGTTTCTTCTTTaGTGGCTGGGATCCATCTGC +
Preference number: 4 (lower is better)
Translates to: CRLRASAFLRACLDFCLKFRFLL*WLGSIC
Trigger: GCAGATGGATCCCAGCCACCAAAGAAGAAACCTAAA...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp ATGATTGGCCACGCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGACAGCAGTTCTGAGATaGCTCCTCCTGCCAAGGACT +
Preference number: 4 (lower is better)
Translates to: MIGHAVQRLPDDRVRRTKTAVLR*LLLPRT
Trigger: AGTCCTTGGCAGGAGGAGCCATCTCAGAACTGCTGT...CTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGCGTGGCCAATCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
CDS-3UTR TCA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAAAACATGTTTGGAATCTaGAAGGGTCAACATGACAGG +
Preference number: 4 (lower is better)
Translates to: CRLRASAFLRACLDFCLKNMFGI*KGQHDR
Trigger: CCTGTCATGTTGACCCTTTCAGATTCCAAACATGTT...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAACTCCAATTTTCTACTTaGTTTTGGGCCCAAATGGAC +
Preference number: 4 (lower is better)
Translates to: CRLRASAFLRACLDFCLKLQFST*FWAQMD
Trigger: GTCCATTTGGGCCCAAAATCAAGTAGAAAATTGGAG...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp GCATTAGCATCCAGATGGAGGGAAATCAAGCCACTTCACACAGGGAAGGCAGAACTGCCTCTTCTTCTCTaGACTAGCCCCTTCATCCAT +
Preference number: 4 (lower is better)
Translates to: ALASRWREIKPLHTGKAELPLLL*TSPFIH
Trigger: ATGGATGAAGGGGCTAGTTCAGAGAAGAAGAGGCAG...TTCTGCCTTCCCTGTGTGAAGTGGCTTGATTTCCCTCCATCTGGATGCTAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR TCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTACTGCCTCTTCTTCTCTaGACTAGCCCCTTCATCCAT +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLLPLLL*TSPFIH
Trigger: ATGGATGAAGGGGCTAGTTCAGAGAAGAAGAGGCAG...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp TCTTTCGAGCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGAGGTCAGGGCCATGCTaGTGCAGTCCAGAGTCCCAT +
Preference number: 4 (lower is better)
Translates to: SFEHLLLCPTFIHNMELQRSGPC*CSPESH
Trigger: ATGGGACTCTGGACTGCATCAGCATGGCCCTGACCT...CTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGCTCGAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCTCGCCTATCAAAAGATaGCACCACGTTCAAATCCGA +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVSPIKR*HHVQIR
Trigger: TCGGATTTGAACGTGGTGGCATCTTTTGATAGGCGA...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAATCACCAGGTTGCCAATaGTCTTTTCCCAGATATACA +
Preference number: 4 (lower is better)
Translates to: CRLRASAFLRACLDFCLKSPGCQ*SFPRYT
Trigger: TGTATATCTGGGAAAAGAGCATTGGCAACCTGGTGA...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTAGCATCAGCCCCTGTTTaGTCAGGCTCACTCTTATCT +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLASAPV*SGSLLS
Trigger: AGATAAGAGTGAGCCTGAGCAAACAGGGGCTGATGC...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTAGCTTCTTCTTGGATTTaGCATCCCCCTTCACACCCA +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLASSWI*HPPSHP
Trigger: TGGGTGTGAAGGGGGATGGCAAATCCAAGAAGAAGC...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp ATGATTGGCCACGCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGTTAGGCCGGCCTGCTTaGTTCTTCTTGGATTTGCCA +
Preference number: 4 (lower is better)
Translates to: MIGHAVQRLPDDRVRRTKLGRPA*FFLDLP
Trigger: TGGCAAATCCAAGAAGAAGCAAGCAGGCCGGCCTAA...CTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGCGTGGCCAATCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTATGGCTGAGTTCCGCCTaGACTTTACCCTTCGTTGAT +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLWLSSA*TLPFVD
Trigger: ATCAACGAAGGGTAAAGTGCAGGCGGAACTCAGCCA...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTAGCAGGAGTTCCCCTCTaGTCCCATGTAAGATCTTCA +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLAGVPL*SHVRSS
Trigger: TGAAGATCTTACATGGGACCAGAGGGGAACTCCTGC...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp TCTTTCGAGCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGTGGGACTGCATCCGGTaGAGGGCCATACGGGTTTTC +
Preference number: 4 (lower is better)
Translates to: SFEHLLLCPTFIHNMELQWDCIR*RAIRVF
Trigger: GAAAACCCGTATGGCCCTCCACCGGATGCAGTCCCA...CTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGCTCGAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCTTTAGGTTTCTTCTTTaGTGGCTGGGATCCATCTGC +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVFRFLL*WLGSIC
Trigger: GCAGATGGATCCCAGCCACCAAAGAAGAAACCTAAA...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCTCATTCGGCACTCCTTaGAGCTCTATATTGGTGGTT +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVSFGTP*SSILVV
Trigger: AACCACCAATATAGAGCTCCAAGGAGTGCCGAATGA...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp ACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGACAGCAGTTCTGAGATaGCTCCTCCTGCTGCCAAGG +
Preference number: 4 (lower is better)
Translates to: TCFSAQPLYTIWSYRKHWTAVLR*LLLLPR
Trigger: CCTTGGCAGCAGGAGGAGCCATCTCAGAACTGCTGT...CCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCAACATGTTTGGAATCTaGAAGGGTCAACATGACAGG +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVNMFGI*KGQHDR
Trigger: CCTGTCATGTTGACCCTTTCAGATTCCAAACATGTT...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTCTCCAATTTTCTACTTaGTTTTGGGCCCAAATGGAC +
Preference number: 4 (lower is better)
Translates to: ESLFGLLLERKAGPCALLLQFST*FWAQMD
Trigger: GTCCATTTGGGCCCAAAATCAAGTAGAAAATTGGAG...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTTTTCATCCAACTCTTTaGAGTCTGGTGCAAATGCAC +
Preference number: 4 (lower is better)
Translates to: ESLFGLLLERKAGPCALLFHPTL*SLVQMH
Trigger: GTGCATTTGCACCAGACTTCAAAGAGTTGGATGAAA...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCTTTCATCCAACTCTTTaGAGTCTGGTGCAAATGCAC +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVFHPTL*SLVQMH
Trigger: GTGCATTTGCACCAGACTTCAAAGAGTTGGATGAAA...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGCTGGGATCCATCTGCTaGAGACTGCCTCTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: HLLLCPTFIHNMELQEALLGSIC*RLPLLL
Trigger: GAGAAGAAGAGGCAGTCTTCAGCAGATGGATCCCAG...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp GCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGCACTCACAAGCTTATaGCCATCTCGGCTCCAACAC +
Preference number: 4 (lower is better)
Translates to: ALASLPNLYTQYGATGSTALTSL*PSRLQH
Trigger: GTGTTGGAGCCGAGATGGTCATAAGCTTGTGAGTGC...AGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGCACTCACAAGCTTATaGCCATCTCGGCTCCAACAC +
Preference number: 4 (lower is better)
Translates to: HLLLCPTFIHNMELQEALALTSL*PSRLQH
Trigger: GTGTTGGAGCCGAGATGGTCATAAGCTTGTGAGTGC...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp TCTACCACAGTACAATGTAATCAACGGGTTTGGCTGTCTGAAGGAGCCTCCACCCTATTCACCAAGTCCTaGAGCTTCTGCATAGGCTCT +
Preference number: 4 (lower is better)
Translates to: STTVQCNQRVWLSEGASTLFTKS*SFCIGS
Trigger: AGAGCCTATGCAGAAGCTGCAGGACTTGGTGAATAG...GGTGGAGGCTCCTTCAGACAGCCAAACCCGTTGATTACATTGTACTGTGGTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR GCA 90 bp ATGATTGGCCACGCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGTCCTTTAGGCCGGCCTaGTTGCTTCTTCTTGGATTT +
Preference number: 4 (lower is better)
Translates to: MIGHAVQRLPDDRVRRTKSFRPA*LLLLGF
Trigger: AAATCCAAGAAGAAGCAAGCAGGCCGGCCTAAAGGA...CTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGCGTGGCCAATCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp AACATGCAATGCAAGGGAACCCCTGATTCTCTAGAGCCCAGCCTCCTGAGCAAACTACCTCAGGGGCAATaGGTAAATACAATAGAGCCT +
Preference number: 4 (lower is better)
Translates to: NMQCKGTPDSLEPSLLSKLPQGQ*VNTIEP
Trigger: AGGCTCTATTGTATTTACCCATTGCCCCTGAGGTAG...TTTGCTCAGGAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp AAAAGAACAGCAAATGCAGAGAGAGCCAAGGTGAGAAAGAGAAGGGTAAAAGCTTGGGACTGCATCCGGTaGAGGGCCATACGGGTTTTC +
Preference number: 4 (lower is better)
Translates to: KRTANAERAKVRKRRVKAWDCIR*RAIRVF
Trigger: GAAAACCCGTATGGCCCTCCACCGGATGCAGTCCCA...AGCTTTTACCCTTCTCTTTCTCACCTTGGCTCTCTCTGCATTTGCTGTTCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp TCAGCTTGCACACCACTGCAGTGTGCTGTACAGAGACATGACATGGAGGTAATGTTCTTCTTTGGTGGCTaGGATCCATCTGCTGAAGAC +
Preference number: 4 (lower is better)
Translates to: SACTPLQCAVQRHDMEVMFFFGG*DPSAED
Trigger: GTCTTCAGCAGATGGATCCCAGCCACCAAAGAAGAA...CATTACCTCCATGTCATGTCTCTGTACAGCACACTGCAGTGGTGTGCAAGCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CCA 90 bp CTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAATTCTTCTTTGGTGGCTaGGATCCATCTGCTGAAGAC +
Preference number: 4 (lower is better)
Translates to: LCPTFIHNMELQEALGGEFFFGG*DPSAED
Trigger: GTCTTCAGCAGATGGATCCCAGCCACCAAAGAAGAA...TTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp TCTACCACAGTACAATGTAATCAACGGGTTTGGCTGTCTGAAGGAGCCTCCACCACACCCAGTAGTGGATaGACTTCATCATTCGGCACT +
Preference number: 4 (lower is better)
Translates to: STTVQCNQRVWLSEGASTTPSSG*TSSFGT
Trigger: AGTGCCGAATGATGAAGTCCATCCACTACTGGGTGT...GGTGGAGGCTCCTTCAGACAGCCAAACCCGTTGATTACATTGTACTGTGGTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTAACACCCAGTAGTGGATaGACTTCATCATTCGGCACT +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLTPSSG*TSSFGT
Trigger: AGTGCCGAATGATGAAGTCCATCCACTACTGGGTGT...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp ATGATTGGCCACGCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGACACCCAGTAGTGGATaGACTTCATCATTCGGCACT +
Preference number: 4 (lower is better)
Translates to: MIGHAVQRLPDDRVRRTKTPSSG*TSSFGT
Trigger: AGTGCCGAATGATGAAGTCCATCCACTACTGGGTGT...CTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGCGTGGCCAATCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTAGGGAATCGAAACCTCTaGTCGCAATCTCCTGAAAGA +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLGNRNL*SQSPER
Trigger: TCTTTCAGGAGATTGCGACCAGAGGTTTCGATTCCC...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp CCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAAGTTACTGCCTCTTCTTCTCTaGACTAGCCCCTTCATCCAT +
Preference number: 4 (lower is better)
Translates to: PNLYTQYGATGSTGRGKLLPLLL*TSPFIH
Trigger: ATGGATGAAGGGGCTAGTTCAGAGAAGAAGAGGCAG...TAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp TGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGTTTCTCTTTACCTTTTaGTCCTTTAGGCCGGCCTGC +
Preference number: 4 (lower is better)
Translates to: CFSAQPLYTIWSYRKHWEFLFTF*SFRPAC
Trigger: GCAGGCCGGCCTAAAGGATCAAAAGGTAAAGAGAAA...CTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp TGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGCTATTCACCAAGTCCTaGAGCTTCTGCATAGGCTCT +
Preference number: 4 (lower is better)
Translates to: CFSAQPLYTIWSYRKHWELFTKS*SFCIGS
Trigger: AGAGCCTATGCAGAAGCTGCAGGACTTGGTGAATAG...CTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTGAAGTCTGGTGCAAATaGACTCCAATTTTCTACTTG +
Preference number: 4 (lower is better)
Translates to: ESLFGLLLERKAGPCALLEVWCK*TPIFYL
Trigger: CAAGTAGAAAATTGGAGTGCATTTGCACCAGACTTC...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp GCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGCATCAGCCCCTGTTTaGTCAGGCTCACTCTTATCT +
Preference number: 4 (lower is better)
Translates to: ALASLPNLYTQYGATGSTASAPV*SGSLLS
Trigger: AGATAAGAGTGAGCCTGAGCAAACAGGGGCTGATGC...AGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGCTTCTTCTTGGATTTaGCATCCCCCTTCACACCCA +
Preference number: 4 (lower is better)
Translates to: HLLLCPTFIHNMELQEALASSWI*HPPSHP
Trigger: TGGGTGTGAAGGGGGATGGCAAATCCAAGAAGAAGC...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp GCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTTTAGGCCGGCCTGCTTaGTTCTTCTTGGATTTGCCA +
Preference number: 4 (lower is better)
Translates to: ALASLPNLYTQYGATGSTLGRPA*FFLDLP
Trigger: TGGCAAATCCAAGAAGAAGCAAGCAGGCCGGCCTAA...AGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp ACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGTGGCTGAGTTCCGCCTaGACTTTACCCTTCGTTGAT +
Preference number: 4 (lower is better)
Translates to: TCFSAQPLYTIWSYRKHWWLSSA*TLPFVD
Trigger: ATCAACGAAGGGTAAAGTGCAGGCGGAACTCAGCCA...CCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp CAGAAACCCCTGCATCAGCTTGCACACCACTGCAGTGTGCTGTACAGAGACATGGCAGAACAACATGTTTaGAATCTGAAAGGGTCAACA +
Preference number: 4 (lower is better)
Translates to: QKPLHQLAHHCSVLYRDMAEQHV*NLKGST
Trigger: TGTTGACCCTTTCAGATTCCAAACATGTTGTTCTGC...CATGTCTCTGTACAGCACACTGCAGTGGTGTGCAAGCTGATGCAGGGGTTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CCA 90 bp GCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGCAGGAGTTCCCCTCTaGTCCCATGTAAGATCTTCA +
Preference number: 4 (lower is better)
Translates to: ALASLPNLYTQYGATGSTAGVPL*SHVRSS
Trigger: TGAAGATCTTACATGGGACCAGAGGGGAACTCCTGC...AGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGCAGGAGTTCCCCTCTaGTCCCATGTAAGATCTTCA +
Preference number: 4 (lower is better)
Translates to: HLLLCPTFIHNMELQEALAGVPL*SHVRSS
Trigger: TGAAGATCTTACATGGGACCAGAGGGGAACTCCTGC...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTCAACTCTTTGAAGTCTaGTGCAAATGCACTCCAATT +
Preference number: 4 (lower is better)
Translates to: ESLFGLLLERKAGPCALLQLFEV*CKCTPI
Trigger: AATTGGAGTGCATTTGCACCAGACTTCAAAGAGTTG...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCCAACTCTTTGAAGTCTaGTGCAAATGCACTCCAATT +
Preference number: 4 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVQLFEV*CKCTPI
Trigger: AATTGGAGTGCATTTGCACCAGACTTCAAAGAGTTG...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp CATCCCGTGAGCCACTTACCAATCACAACCATTGGTCTCACTCACACTTGGAAGCTACCTCAGGGGCAATaGGTAAATACAATAGAGCCT +
Preference number: 4 (lower is better)
Translates to: HPVSHLPITTIGLTHTWKLPQGQ*VNTIEP
Trigger: AGGCTCTATTGTATTTACCCATTGCCCCTGAGGTAG...CTTCCAAGTGTGAGTGAGACCAATGGTTGTGATTGGTAAGTGGCTCACGGGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CCA 90 bp ATGATTGGCCACGCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGCTACCTCAGGGGCAATaGGTAAATACAATAGAGCCT +
Preference number: 4 (lower is better)
Translates to: MIGHAVQRLPDDRVRRTKLPQGQ*VNTIEP
Trigger: AGGCTCTATTGTATTTACCCATTGCCCCTGAGGTAG...CTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGCGTGGCCAATCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp TGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGTTCTTCTTTGGTGGCTaGGATCCATCTGCTGAAGAC +
Preference number: 4 (lower is better)
Translates to: CFSAQPLYTIWSYRKHWEFFFGG*DPSAED
Trigger: GTCTTCAGCAGATGGATCCCAGCCACCAAAGAAGAA...CTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp CATCCCGTGAGCCACTTACCAATCACAACCATTGGTCTCACTCACACTTGGAAGTTTAGGTTTCTTCTTTaGTGGCTGGGATCCATCTGC +
Preference number: 4 (lower is better)
Translates to: HPVSHLPITTIGLTHTWKFRFLL*WLGSIC
Trigger: GCAGATGGATCCCAGCCACCAAAGAAGAAACCTAAA...CTTCCAAGTGTGAGTGAGACCAATGGTTGTGATTGGTAAGTGGCTCACGGGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CCA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTATTGGACTTTTAAGATaGGTGAAGGGAATCGAAACC +
Preference number: 4 (lower is better)
Translates to: ESLFGLLLERKAGPCALLIGLLR*VKGIET
Trigger: GGTTTCGATTCCCTTCACCCATCTTAAAAGTCCAAT...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp ATGATTGGCCACGCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGAACATGTTTGGAATCTaGAAGGGTCAACATGACAGG +
Preference number: 4 (lower is better)
Translates to: MIGHAVQRLPDDRVRRTKNMFGI*KGQHDR
Trigger: CCTGTCATGTTGACCCTTTCAGATTCCAAACATGTT...CTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGCGTGGCCAATCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp ATTGCCAGAGGCGTCACTAACCCTTCGCACACTTGGCTTCCTGACTTTGGATTTCCGGGCAAACTCAATTaGTTTAATGGCGGTAGTATT +
Preference number: 4 (lower is better)
Translates to: IARGVTNPSHTWLPDFGFPGKLN*FNGGSI
Trigger: AATACTACCGCCATTAAATCAATTGAGTTTGCCCGG...AAATCCAAAGTCAGGAAGCCAAGTGTGCGAAGGGTTAGTGACGCCTCTGGCAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR TCA 90 bp TCAGCTTGCACACCACTGCAGTGTGCTGTACAGAGACATGACATGGAGGTAATGCTCCAATTTTCTACTTaGTTTTGGGCCCAAATGGAC +
Preference number: 4 (lower is better)
Translates to: SACTPLQCAVQRHDMEVMLQFST*FWAQMD
Trigger: GTCCATTTGGGCCCAAAATCAAGTAGAAAATTGGAG...CATTACCTCCATGTCATGTCTCTGTACAGCACACTGCAGTGGTGTGCAAGCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR TCA 90 bp TACAGGAAGCACTGGGAGGGGAAAGTTATGAATGAAAGAAACAGAAGATGCATCTGGGATCCACGCTGGTaGCATCCACTTCCTCATCTT +
Preference number: 4 (lower is better)
Translates to: YRKHWEGKVMNERNRRCIWDPRW*HPLPHL
Trigger: AAGATGAGGAAGTGGATGTCACCAGCGTGGATCCCA...GATGCATCTTCTGTTTCTTTCATTCATAACTTTCCCCTCCCAGTGCTTCCTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp CCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAAGTTACTGAAAGGGTCAACATaGCAGGAGCAGATTTCATGG +
Preference number: 4 (lower is better)
Translates to: PNLYTQYGATGSTGRGKLLKGST*QEQISW
Trigger: CCATGAAATCTGCTCCTGTCATGTTGACCCTTTCAG...TAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGCTATTCACCAAGTCCTaGAGCTTCTGCATAGGCTCT +
Preference number: 4 (lower is better)
Translates to: HLLLCPTFIHNMELQEALLFTKS*SFCIGS
Trigger: AGAGCCTATGCAGAAGCTGCAGGACTTGGTGAATAG...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTATCACCAGGTTGCCAATaGTCTTTTCCCAGATATACA +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLSPGCQ*SFPRYT
Trigger: TGTATATCTGGGAAAAGAGCATTGGCAACCTGGTGA...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp ATGATTGGCCACGCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGTCACCAGGTTGCCAATaGTCTTTTCCCAGATATACA +
Preference number: 4 (lower is better)
Translates to: MIGHAVQRLPDDRVRRTKSPGCQ*SFPRYT
Trigger: TGTATATCTGGGAAAAGAGCATTGGCAACCTGGTGA...CTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGCGTGGCCAATCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp CCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAAGTTATCCTTTAGGCCGGCCTaGTTGCTTCTTCTTGGATTT +
Preference number: 4 (lower is better)
Translates to: PNLYTQYGATGSTGRGKLSFRPA*LLLLGF
Trigger: AAATCCAAGAAGAAGCAAGCAGGCCGGCCTAAAGGA...TAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp GCATTAGCATCCAGATGGAGGGAAATCAAGCCACTTCACACAGGGAAGGCAGAACTCTTTGAAGTCTGGTaGAAATGCACTCCAATTTTC +
Preference number: 4 (lower is better)
Translates to: ALASRWREIKPLHTGKAELFEVW*KCTPIF
Trigger: GAAAATTGGAGTGCATTTGCACCAGACTTCAAAGAG...TTCTGCCTTCCCTGTGTGAAGTGGCTTGATTTCCCTCCATCTGGATGCTAATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR GCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTACTCTTTGAAGTCTGGTaGAAATGCACTCCAATTTTC +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLLFEVW*KCTPIF
Trigger: GAAAATTGGAGTGCATTTGCACCAGACTTCAAAGAG...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp ACTAGAAACTTCCAGCGTGTCCCTGTCACATCTACCACAGTACAATGTAATCAAGCATCAGCCCCTGTTTaGTCAGGCTCACTCTTATCT +
Preference number: 4 (lower is better)
Translates to: TRNFQRVPVTSTTVQCNQASAPV*SGSLLS
Trigger: AGATAAGAGTGAGCCTGAGCAAACAGGGGCTGATGC...TTGATTACATTGTACTGTGGTAGATGTGACAGGGACACGCTGGAAGTTTCTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR GCA 90 bp AAAAGAACAGCAAATGCAGAGAGAGCCAAGGTGAGAAAGAGAAGGGTAAAAGCTGCTTCTTCTTGGATTTaGCATCCCCCTTCACACCCA +
Preference number: 4 (lower is better)
Translates to: KRTANAERAKVRKRRVKAASSWI*HPPSHP
Trigger: TGGGTGTGAAGGGGGATGGCAAATCCAAGAAGAAGC...AGCTTTTACCCTTCTCTTTCTCACCTTGGCTCTCTCTGCATTTGCTGTTCTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTAGCAGAACAACATGTTTaGAATCTGAAAGGGTCAACA +
Preference number: 4 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLAEQHV*NLKGST
Trigger: TGTTGACCCTTTCAGATTCCAAACATGTTGTTCTGC...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp ACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGTCATTCGGCACTCCTTaGAGCTCTATATTGGTGGTT +
Preference number: 4 (lower is better)
Translates to: TCFSAQPLYTIWSYRKHWSFGTP*SSILVV
Trigger: AACCACCAATATAGAGCTCCAAGGAGTGCCGAATGA...CCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGTCATTCGGCACTCCTTaGAGCTCTATATTGGTGGTT +
Preference number: 4 (lower is better)
Translates to: HLLLCPTFIHNMELQEALSFGTP*SSILVV
Trigger: AACCACCAATATAGAGCTCCAAGGAGTGCCGAATGA...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
3UTR CAA 72 bp CCTTCCTTTCCTGCCAGTCTGAAATCTTTCGAGCACTaGCTTCTCTGCCCAACCTTTATACACAATATGGAG +
Preference number: 4 (lower is better)
Translates to: PSFPASLKSFEH*LLCPTFIHNME
Trigger: CTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGCTCGAAAGATTTCAGACTGGCAGGAAAGGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp CCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAAGTTACTCCAATTTTCTACTTaGTTTTGGGCCCAAATGGAC +
Preference number: 4 (lower is better)
Translates to: PNLYTQYGATGSTGRGKLLQFST*FWAQMD
Trigger: GTCCATTTGGGCCCAAAATCAAGTAGAAAATTGGAG...TAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp ACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGTTTCATCCAACTCTTTaGAGTCTGGTGCAAATGCAC +
Preference number: 4 (lower is better)
Translates to: TCFSAQPLYTIWSYRKHWFHPTL*SLVQMH
Trigger: GTGCATTTGCACCAGACTTCAAAGAGTTGGATGAAA...CCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp GCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTTTTCATCCAACTCTTTaGAGTCTGGTGCAAATGCAC +
Preference number: 4 (lower is better)
Translates to: ALASLPNLYTQYGATGSTFHPTL*SLVQMH
Trigger: GTGCATTTGCACCAGACTTCAAAGAGTTGGATGAAA...AGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp TACAGGAAGCACTGGGAGGGGAAAGTTATGAATGAAAGAAACAGAAGATGCATCCTGAAAGGGTCAACATaGCAGGAGCAGATTTCATGG +
Preference number: 4 (lower is better)
Translates to: YRKHWEGKVMNERNRRCILKGST*QEQISW
Trigger: CCATGAAATCTGCTCCTGTCATGTTGACCCTTTCAG...GATGCATCTTCTGTTTCTTTCATTCATAACTTTCCCCTCCCAGTGCTTCCTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp TGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGAAGTCTGGTGCAAATaGACTCCAATTTTCTACTTG +
Preference number: 4 (lower is better)
Translates to: CFSAQPLYTIWSYRKHWEEVWCK*TPIFYL
Trigger: CAAGTAGAAAATTGGAGTGCATTTGCACCAGACTTC...CTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp TGGAAATGGGACACAGCATTAGCATCCAGATGGAGGGAAATCAAGCCACTTCACCAACTCTTTGAAGTCTaGTGCAAATGCACTCCAATT +
Preference number: 4 (lower is better)
Translates to: WKWDTALASRWREIKPLHQLFEV*CKCTPI
Trigger: AATTGGAGTGCATTTGCACCAGACTTCAAAGAGTTG...GTGAAGTGGCTTGATTTCCCTCCATCTGGATGCTAATGCTGTGTCCCATTTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CCA 90 bp TCTTTCGAGCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGCTACCTCAGGGGCAATaGGTAAATACAATAGAGCCT +
Preference number: 4 (lower is better)
Translates to: SFEHLLLCPTFIHNMELQLPQGQ*VNTIEP
Trigger: AGGCTCTATTGTATTTACCCATTGCCCCTGAGGTAG...CTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGCTCGAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp TACAGGAAGCACTGGGAGGGGAAAGTTATGAATGAAAGAAACAGAAGATGCATCACACCCAGTAGTGGATaGACTTCATCATTCGGCACT +
Preference number: 4 (lower is better)
Translates to: YRKHWEGKVMNERNRRCITPSSG*TSSFGT
Trigger: AGTGCCGAATGATGAAGTCCATCCACTACTGGGTGT...GATGCATCTTCTGTTTCTTTCATTCATAACTTTCCCCTCCCAGTGCTTCCTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp AAAAGAACAGCAAATGCAGAGAGAGCCAAGGTGAGAAAGAGAAGGGTAAAAGCTGGGAATCGAAACCTCTaGTCGCAATCTCCTGAAAGA +
Preference number: 4 (lower is better)
Translates to: KRTANAERAKVRKRRVKAGNRNL*SQSPER
Trigger: TCTTTCAGGAGATTGCGACCAGAGGTTTCGATTCCC...AGCTTTTACCCTTCTCTTTCTCACCTTGGCTCTCTCTGCATTTGCTGTTCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190997.7
CDS-3UTR TCA 90 bp TCTTTCGAGCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGAACATGTTTGGAATCTaGAAGGGTCAACATGACAGG +
Preference number: 4 (lower is better)
Translates to: SFEHLLLCPTFIHNMELQNMFGI*KGQHDR
Trigger: CCTGTCATGTTGACCCTTTCAGATTCCAAACATGTT...CTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGCTCGAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp AAAAGAACAGCAAATGCAGAGAGAGCCAAGGTGAGAAAGAGAAGGGTAAAAGCTTCGCCTATCAAAAGATaGCACCACGTTCAAATCCGA +
Preference number: 4 (lower is better)
Translates to: KRTANAERAKVRKRRVKASPIKR*HHVQIR
Trigger: TCGGATTTGAACGTGGTGGCATCTTTTGATAGGCGA...AGCTTTTACCCTTCTCTTTCTCACCTTGGCTCTCTCTGCATTTGCTGTTCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGAAGTCTGGTGCAAATaGACTCCAATTTTCTACTTG +
Preference number: 4 (lower is better)
Translates to: HLLLCPTFIHNMELQEALEVWCK*TPIFYL
Trigger: CAAGTAGAAAATTGGAGTGCATTTGCACCAGACTTC...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp GCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGAAGTCTGGTGCAAATaGACTCCAATTTTCTACTTG +
Preference number: 4 (lower is better)
Translates to: ALASLPNLYTQYGATGSTEVWCK*TPIFYL
Trigger: CAAGTAGAAAATTGGAGTGCATTTGCACCAGACTTC...AGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp CTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAGACTGGATGGATGTGTaGACTAATTATTTTAGCAAT +
Preference number: 4 (lower is better)
Translates to: LCPTFIHNMELQEALGGEDWMDV*TNYFSN
Trigger: ATTGCTAAAATAATTAGTGCACACATCCATCCAGTC...TTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp AAAAGAACAGCAAATGCAGAGAGAGCCAAGGTGAGAAAGAGAAGGGTAAAAGCTTTTAGGTTTCTTCTTTaGTGGCTGGGATCCATCTGC +
Preference number: 4 (lower is better)
Translates to: KRTANAERAKVRKRRVKAFRFLL*WLGSIC
Trigger: GCAGATGGATCCCAGCCACCAAAGAAGAAACCTAAA...AGCTTTTACCCTTCTCTTTCTCACCTTGGCTCTCTCTGCATTTGCTGTTCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp ACTAGAAACTTCCAGCGTGTCCCTGTCACATCTACCACAGTACAATGTAATCAATCATTCGGCACTCCTTaGAGCTCTATATTGGTGGTT +
Preference number: 4 (lower is better)
Translates to: TRNFQRVPVTSTTVQCNQSFGTP*SSILVV
Trigger: AACCACCAATATAGAGCTCCAAGGAGTGCCGAATGA...TTGATTACATTGTACTGTGGTAGATGTGACAGGGACACGCTGGAAGTTTCTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CCA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGACACAAAGAACAGACTaGATGGATGTGTGCACTAAT +
Preference number: 4 (lower is better)
Translates to: HLLLCPTFIHNMELQEALTQRTD*MDVCTN
Trigger: ATTAGTGCACACATCCATCCAGTCTGTTCTTTGTGT...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp GCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTACACAAAGAACAGACTaGATGGATGTGTGCACTAAT +
Preference number: 4 (lower is better)
Translates to: ALASLPNLYTQYGATGSTTQRTD*MDVCTN
Trigger: ATTAGTGCACACATCCATCCAGTCTGTTCTTTGTGT...AGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGATTGGACTTTTAAGATaGGTGAAGGGAATCGAAACC +
Preference number: 4 (lower is better)
Translates to: HLLLCPTFIHNMELQEALIGLLR*VKGIET
Trigger: GGTTTCGATTCCCTTCACCCATCTTAAAAGTCCAAT...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp ATGATTGGCCACGCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGAGTTTCGGTTTAAATaGAGAATCTTTCTCTTTACC +
Preference number: 4 (lower is better)
Translates to: MIGHAVQRLPDDRVRRTKEFRFK*RIFLFT
Trigger: GGTAAAGAGAAAGATTCTCCATTTAAACCGAAACTC...CTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGCGTGGCCAATCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR GCA 90 bp AAAAGAACAGCAAATGCAGAGAGAGCCAAGGTGAGAAAGAGAAGGGTAAAAGCTCTCTTTGAAGTCTGGTaGAAATGCACTCCAATTTTC +
Preference number: 4 (lower is better)
Translates to: KRTANAERAKVRKRRVKALFEVW*KCTPIF
Trigger: GAAAATTGGAGTGCATTTGCACCAGACTTCAAAGAG...AGCTTTTACCCTTCTCTTTCTCACCTTGGCTCTCTCTGCATTTGCTGTTCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp TACAGGAAGCACTGGGAGGGGAAAGTTATGAATGAAAGAAACAGAAGATGCATCGCAGAACAACATGTTTaGAATCTGAAAGGGTCAACA +
Preference number: 4 (lower is better)
Translates to: YRKHWEGKVMNERNRRCIAEQHV*NLKGST
Trigger: TGTTGACCCTTTCAGATTCCAAACATGTTGTTCTGC...GATGCATCTTCTGTTTCTTTCATTCATAACTTTCCCCTCCCAGTGCTTCCTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp TACAGGAAGCACTGGGAGGGGAAAGTTATGAATGAAAGAAACAGAAGATGCATCCAACTCTTTGAAGTCTaGTGCAAATGCACTCCAATT +
Preference number: 4 (lower is better)
Translates to: YRKHWEGKVMNERNRRCIQLFEV*CKCTPI
Trigger: AATTGGAGTGCATTTGCACCAGACTTCAAAGAGTTG...GATGCATCTTCTGTTTCTTTCATTCATAACTTTCCCCTCCCAGTGCTTCCTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGAGTTTCGGTTTAAATaGAGAATCTTTCTCTTTACC +
Preference number: 4 (lower is better)
Translates to: HLLLCPTFIHNMELQEALEFRFK*RIFLFT
Trigger: GGTAAAGAGAAAGATTCTCCATTTAAACCGAAACTC...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CCA 90 bp GCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGAGTTTCGGTTTAAATaGAGAATCTTTCTCTTTACC +
Preference number: 4 (lower is better)
Translates to: ALASLPNLYTQYGATGSTEFRFK*RIFLFT
Trigger: GGTAAAGAGAAAGATTCTCCATTTAAACCGAAACTC...AGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 90 bp GGAGTTCCCCTCTGGTCCCATGTAAGATCTTCACCAGGTTGCCAATaGTCTTTTCCCAGATATACAGCGCATGCTGCCTCGCAGAGCCCG +
Preference number: 5 (lower is better)
Translates to: GVPLWSHVRSSPGCQ*SFPRYTAHAASQSP
Trigger: CGGGCTCTGCGAGGCAGCATGCGCTGTATATCTGGGAAAAGAGCATTGGCAACCTGGTGAAGATCTTACATGGGACCAGAGGGGAACTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 90 bp GACACCACTCCACTAGAGATAGAAGCTATGATGGGTCGGACTGGATaGCAAGCCACGTCCAGCAGGAGTTCCCCTCTGGTCCCATGTAAG +
Preference number: 5 (lower is better)
Translates to: DTTPLEIEAMMGRTG*QATSSRSSPLVPCK
Trigger: CTTACATGGGACCAGAGGGGAACTCCTGCTGGACGTGGCTTGGCATCCAGTCCGACCCATCATAGCTTCTATCTCTAGTGGAGTGGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 90 bp TCTGAGATGGCTCCTCCTGCTGCCAAGGACTGGCTGAGTTCCGCCTaGACTTTACCCTTCGTTGATCCTTCCAGAGGTAAACCTCTGTCC +
Preference number: 5 (lower is better)
Translates to: SEMAPPAAKDWLSSA*TLPFVDPSRGKPLS
Trigger: GGACAGAGGTTTACCTCTGGAAGGATCAACGAAGGGTAAAGTGCAGGCGGAACTCAGCCAGTCCTTGGCAGCAGGAGGAGCCATCTCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190997.7
CDS CCA 90 bp AATGGACACCACTCCACTAGAGATAGAAGCTATGATGGGTCGGACTaGATGCCAAGCCACGTCCAGCAGGAGTTCCCCTCTGGTCCCATG +
Preference number: 5 (lower is better)
Translates to: NGHHSTRDRSYDGSD*MPSHVQQEFPSGPM
Trigger: CATGGGACCAGAGGGGAACTCCTGCTGGACGTGGCTTGGCATCCAGTCCGACCCATCATAGCTTCTATCTCTAGTGGAGTGGTGTCCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp AACATGCAATGCAAGGGAACCCCTGATTCTCTAGAGCCCAGCCTCCTGAGCAAACATCCATCAAGGAGCTaGGGACTGCATCCGGTGGAG +
Preference number: 5 (lower is better)
Translates to: NMQCKGTPDSLEPSLLSKHPSRS*GLHPVE
Trigger: CTCCACCGGATGCAGTCCCAAGCTCCTTGATGGATG...TTTGCTCAGGAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAATGCTTCTTCTTGGATTaGCCATCCCCCTTCACACCC +
Preference number: 5 (lower is better)
Translates to: CRLRASAFLRACLDFCLKCFFLD*PSPFTP
Trigger: GGGTGTGAAGGGGGATGGCAAATCCAAGAAGAAGCA...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAATTTAGGCCGGCCTGCTaGCTTCTTCTTGGATTTGCC +
Preference number: 5 (lower is better)
Translates to: CRLRASAFLRACLDFCLKFRPAC*LLLGFA
Trigger: GGCAAATCCAAGAAGAAGCAAGCAGGCCGGCCTAAA...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 90 bp TCTGAGATGGCTCCTCCTGCTTTTGATCCTTTAGGCCGGCCTGCTTaGTTCTTCTTGGATTTGCCATCCCCCTTCACACCCAGTAGTGGA +
Preference number: 5 (lower is better)
Translates to: SEMAPPAFDPLGRPA*FFLDLPSPFTPSSG
Trigger: TCCACTACTGGGTGTGAAGGGGGATGGCAAATCCAAGAAGAAGCAAGCAGGCCGGCCTAAAGGATCAAAAGCAGGAGGAGCCATCTCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CAA 90 bp CAGAAACCCCTGCATCAGCTTGCACACCACTGCAGTGTGCTGTACAGAGACATGAGCATCAGCCCCTGTTaGCTCAGGCTCACTCTTATC +
Preference number: 5 (lower is better)
Translates to: QKPLHQLAHHCSVLYRDMSISPC*LRLTLI
Trigger: GATAAGAGTGAGCCTGAGCAAACAGGGGCTGATGCT...CATGTCTCTGTACAGCACACTGCAGTGGTGTGCAAGCTGATGCAGGGGTTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CAA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTACATCCATCAAGGAGCTaGGGACTGCATCCGGTGGAG +
Preference number: 5 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLHPSRS*GLHPVE
Trigger: CTCCACCGGATGCAGTCCCAAGCTCCTTGATGGATG...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTTGCTTCTTCTTGGATTaGCCATCCCCCTTCACACCC +
Preference number: 5 (lower is better)
Translates to: ESLFGLLLERKAGPCALLCFFLD*PSPFTP
Trigger: GGGTGTGAAGGGGGATGGCAAATCCAAGAAGAAGCA...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp AACATGCAATGCAAGGGAACCCCTGATTCTCTAGAGCCCAGCCTCCTGAGCAAAAGCATCAGCCCCTGTTaGCTCAGGCTCACTCTTATC +
Preference number: 5 (lower is better)
Translates to: NMQCKGTPDSLEPSLLSKSISPC*LRLTLI
Trigger: GATAAGAGTGAGCCTGAGCAAACAGGGGCTGATGCT...TTTGCTCAGGAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp TGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGCATCCATCAAGGAGCTaGGGACTGCATCCGGTGGAG +
Preference number: 5 (lower is better)
Translates to: CFSAQPLYTIWSYRKHWEHPSRS*GLHPVE
Trigger: CTCCACCGGATGCAGTCCCAAGCTCCTTGATGGATG...CTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAAATCATTCGGCACTCCTaGGAGCTCTATATTGGTGGT +
Preference number: 5 (lower is better)
Translates to: CRLRASAFLRACLDFCLKIIRHS*ELYIGG
Trigger: ACCACCAATATAGAGCTCCAAGGAGTGCCGAATGAT...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp GCCAGAGGCGTCACTAACCCTTCGCACACTTGGCTTCCTGACTTTGGATTTTCATTTAGGCCGGCCTGCTaGCTTCTTCTTGGATTTGCC +
Preference number: 5 (lower is better)
Translates to: ARGVTNPSHTWLPDFGFSFRPAC*LLLGFA
Trigger: GGCAAATCCAAGAAGAAGCAAGCAGGCCGGCCTAAA...TGAAAATCCAAAGTCAGGAAGCCAAGTGTGCGAAGGGTTAGTGACGCCTCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CAA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTAAGCATCAGCCCCTGTTaGCTCAGGCTCACTCTTATC +
Preference number: 5 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLSISPC*LRLTLI
Trigger: GATAAGAGTGAGCCTGAGCAAACAGGGGCTGATGCT...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTATCATTCGGCACTCCTaGGAGCTCTATATTGGTGGT +
Preference number: 5 (lower is better)
Translates to: ESLFGLLLERKAGPCALLIIRHS*ELYIGG
Trigger: ACCACCAATATAGAGCTCCAAGGAGTGCCGAATGAT...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp CTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAATTTAGGCCGGCCTGCTaGCTTCTTCTTGGATTTGCC +
Preference number: 5 (lower is better)
Translates to: LCPTFIHNMELQEALGGEFRPAC*LLLGFA
Trigger: GGCAAATCCAAGAAGAAGCAAGCAGGCCGGCCTAAA...TTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCGCACTTTACCCTTCGTaGATCCTTCCAGAGGTAAAC +
Preference number: 5 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVALYPS*ILPEVN
Trigger: GTTTACCTCTGGAAGGATCAACGAAGGGTAAAGTGC...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCGGCAGAACAACATGTTaGGAATCTGAAAGGGTCAAC +
Preference number: 5 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVGRTTC*ESERVN
Trigger: GTTGACCCTTTCAGATTCCAAACATGTTGTTCTGCC...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp AGGGAAGGCAGAAACCCCTGCATCAGCTTGCACACCACTGCAGTGTGCTGTACACCTTGGAGCTCTATATaGGTGGTTTTAGGTTTCTTC +
Preference number: 5 (lower is better)
Translates to: REGRNPCISLHTTAVCCTPWSSI*VVLGFF
Trigger: GAAGAAACCTAAAACCACCAATATAGAGCTCCAAGG...TGTACAGCACACTGCAGTGGTGTGCAAGCTGATGCAGGGGTTTCTGCCTTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CAA 90 bp TGCCGTCTTCGCGCATCCGCGTTCCTGAGAGCCTGTTTGGACTTCTGCTTGAAACCTTGGAGCTCTATATaGGTGGTTTTAGGTTTCTTC +
Preference number: 5 (lower is better)
Translates to: CRLRASAFLRACLDFCLKPWSSI*VVLGFF
Trigger: GAAGAAACCTAAAACCACCAATATAGAGCTCCAAGG...TTTCAAGCAGAAGTCCAAACAGGCTCTCAGGAACGCGGATGCGCGAAGACGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp AACATGCAATGCAAGGGAACCCCTGATTCTCTAGAGCCCAGCCTCCTGAGCAAAGCACTTTACCCTTCGTaGATCCTTCCAGAGGTAAAC +
Preference number: 5 (lower is better)
Translates to: NMQCKGTPDSLEPSLLSKALYPS*ILPEVN
Trigger: GTTTACCTCTGGAAGGATCAACGAAGGGTAAAGTGC...TTTGCTCAGGAGGCTGGGCTCTAGAGAATCAGGGGTTCCCTTGCATTGCATGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 90 bp GGAGAATCTTTCTCTTTACCTTTTGATCCTTTAGGCCGGCCTGCTTaGTTCTTCTTGGATTTGCCATCCCCCTTCACACCCAGTAGTGGA +
Preference number: 5 (lower is better)
Translates to: GESFSLPFDPLGRPA*FFLDLPSPFTPSSG
Trigger: TCCACTACTGGGTGTGAAGGGGGATGGCAAATCCAAGAAGAAGCAAGCAGGCCGGCCTAAAGGATCAAAAGGTAAAGAGAAAGATTCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp GCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGGTTCCACGGTCATTTTCTACTTGATTTaGGGCCCAAATGGACACCAC +
Preference number: 5 (lower is better)
Translates to: AVQRLPDDRVRRTKGSTVIFYLI*GPNGHH
Trigger: GTGGTGTCCATTTGGGCCCAAAATCAAGTAGAAAAT...GACCGTGGAACCCTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp CCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAAGTTAAGCATCAGCCCCTGTTaGCTCAGGCTCACTCTTATC +
Preference number: 5 (lower is better)
Translates to: PNLYTQYGATGSTGRGKLSISPC*LRLTLI
Trigger: GATAAGAGTGAGCCTGAGCAAACAGGGGCTGATGCT...TAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp ATGATTGGCCACGCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGATCATTCGGCACTCCTaGGAGCTCTATATTGGTGGT +
Preference number: 5 (lower is better)
Translates to: MIGHAVQRLPDDRVRRTKIIRHS*ELYIGG
Trigger: ACCACCAATATAGAGCTCCAAGGAGTGCCGAATGAT...CTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGCGTGGCCAATCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp GCACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTTGCTTCTTCTTGGATTaGCCATCCCCCTTCACACCC +
Preference number: 5 (lower is better)
Translates to: ALASLPNLYTQYGATGSTCFFLD*PSPFTP
Trigger: GGGTGTGAAGGGGGATGGCAAATCCAAGAAGAAGCA...AGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp CCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAAGTTATGCTTCTTCTTGGATTaGCCATCCCCCTTCACACCC +
Preference number: 5 (lower is better)
Translates to: PNLYTQYGATGSTGRGKLCFFLD*PSPFTP
Trigger: GGGTGTGAAGGGGGATGGCAAATCCAAGAAGAAGCA...TAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp ATGATTGGCCACGCTGTCCAAAGGCTACCTGATGACAGAGTGAGAAGAACCAAGGCACTTTACCCTTCGTaGATCCTTCCAGAGGTAAAC +
Preference number: 5 (lower is better)
Translates to: MIGHAVQRLPDDRVRRTKALYPS*ILPEVN
Trigger: GTTTACCTCTGGAAGGATCAACGAAGGGTAAAGTGC...CTTGGTTCTTCTCACTCTGTCATCAGGTAGCCTTTGGACAGCGTGGCCAATCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS TCA 90 bp CAAATCCGAGTCATCGTCTACCGGCAGAACAACATGTTTGGAATCTaGAAGGGTCAACATGACAGGAGCAGATTTCATGGGACACACGAG +
Preference number: 5 (lower is better)
Translates to: QIRVIVYRQNNMFGI*KGQHDRSRFHGTHE
Trigger: CTCGTGTGTCCCATGAAATCTGCTCCTGTCATGTTGACCCTTTCAGATTCCAAACATGTTGTTCTGCCGGTAGACGATGACTCGGATTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000189786.3
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CCA 90 bp GAGGGCCATACGGGTTTTCTTCAGGGTCTTCTACCTCAGGGGCAATaGGTAAATACAATAGAGCCTTTGAATCTTCCAGCTCTTCATCAC +
Preference number: 5 (lower is better)
Translates to: EGHTGFLQGLLPQGQ*VNTIEPLNLPALHH
Trigger: GTGATGAAGAGCTGGAAGATTCAAAGGCTCTATTGTATTTACCCATTGCCCCTGAGGTAGAAGACCCTGAAGAAAACCCGTATGGCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CCA 90 bp CCTTGGAGCTCTATATTGGTGGTTTTAGGTTTCTTCTTTGGTGGCTaGGATCCATCTGCTGAAGACTGCCTCTTCTTCTCTGAACTAGCC +
Preference number: 5 (lower is better)
Translates to: PWSSILVVLGFFFGG*DPSAEDCLFFSELA
Trigger: GGCTAGTTCAGAGAAGAAGAGGCAGTCTTCAGCAGATGGATCCCAGCCACCAAAGAAGAAACCTAAAACCACCAATATAGAGCTCCAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp GAGAGCCTGTTTGGACTTCTGCTTGAAAGGAAGGCAGGGCCGTGTGCTCTTCTTACTCCAATTTTCTACTaGATTTTGGGCCCAAATGGA +
Preference number: 5 (lower is better)
Translates to: ESLFGLLLERKAGPCALLTPIFY*ILGPNG
Trigger: TCCATTTGGGCCCAAAATCAAGTAGAAAATTGGAGT...AAGAAGAGCACACGGCCCTGCCTTCCTTTCAAGCAGAAGTCCAAACAGGCTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGCAGAACAACATGTTaGGAATCTGAAAGGGTCAAC +
Preference number: 5 (lower is better)
Translates to: HLLLCPTFIHNMELQEALGRTTC*ESERVN
Trigger: GTTGACCCTTTCAGATTCCAAACATGTTGTTCTGCC...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp CCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAAGTTAGGCAGAACAACATGTTaGGAATCTGAAAGGGTCAAC +
Preference number: 5 (lower is better)
Translates to: PNLYTQYGATGSTGRGKLGRTTC*ESERVN
Trigger: GTTGACCCTTTCAGATTCCAAACATGTTGTTCTGCC...TAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp ACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGGCAGAACAACATGTTaGGAATCTGAAAGGGTCAAC +
Preference number: 5 (lower is better)
Translates to: TCFSAQPLYTIWSYRKHWGRTTC*ESERVN
Trigger: GTTGACCCTTTCAGATTCCAAACATGTTGTTCTGCC...CCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp TGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGATTTTCTACTTGATTTaGGGCCCAAATGGACACCAC +
Preference number: 5 (lower is better)
Translates to: CFSAQPLYTIWSYRKHWEIFYLI*GPNGHH
Trigger: GTGGTGTCCATTTGGGCCCAAAATCAAGTAGAAAAT...CTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp CATCCCGTGAGCCACTTACCAATCACAACCATTGGTCTCACTCACACTTGGAAGACTCCAATTTTCTACTaGATTTTGGGCCCAAATGGA +
Preference number: 5 (lower is better)
Translates to: HPVSHLPITTIGLTHTWKTPIFY*ILGPNG
Trigger: TCCATTTGGGCCCAAAATCAAGTAGAAAATTGGAGT...CTTCCAAGTGTGAGTGAGACCAATGGTTGTGATTGGTAAGTGGCTCACGGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS-3UTR CAA 90 bp AAAATCCACTCCTTCACCTCCTGGGTGGGAGGCAGAGGCCTTTGTTTTCAACTATTTTCATCCAACTCTTaGAAGTCTGGTGCAAATGCA +
Preference number: 5 (lower is better)
Translates to: KIHSFTSWVGGRGLCFQLFSSNS*KSGANA
Trigger: TGCATTTGCACCAGACTTCAAAGAGTTGGATGAAAA...TAGTTGAAAACAAAGGCCTCTGCCTCCCACCCAGGAGGTGAAGGAGTGGATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS TCA 90 bp TGCTGTGTTAATCAGGAAGCAACTCCCCTTCCGGGCAAACTCAATTaGTTTAATGGCGGTAGTATTGCTTGTCCCAGTTGTTACTCTGAA +
Preference number: 5 (lower is better)
Translates to: CCVNQEATPLPGKLN*FNGGSIACPSCYSE
Trigger: TTCAGAGTAACAACTGGGACAAGCAATACTACCGCCATTAAATCAATTGAGTTTGCCCGGAAGGGGAGTTGCTTCCTGATTAACACAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CCA 90 bp CGAGAACCTTGTTCTGATCTCGAGGATGATATTGGACTTTTAAGATaGGTGAAGGGAATCGAAACCTCTGGTCGCAATCTCCTGAAAGAA +
Preference number: 5 (lower is better)
Translates to: REPCSDLEDDIGLLR*VKGIETSGRNLLKE
Trigger: TTCTTTCAGGAGATTGCGACCAGAGGTTTCGATTCCCTTCACCCATCTTAAAAGTCCAATATCATCCTCGAGATCAGAACAAGGTTCTCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000188575.7
ENSMUST00000189786.3
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp TGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGTTTTCATCCAACTCTTaGAAGTCTGGTGCAAATGCA +
Preference number: 5 (lower is better)
Translates to: CFSAQPLYTIWSYRKHWEFSSNS*KSGANA
Trigger: TGCATTTGCACCAGACTTCAAAGAGTTGGATGAAAA...CTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp ACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGCCTTGGAGCTCTATATaGGTGGTTTTAGGTTTCTTC +
Preference number: 5 (lower is better)
Translates to: TCFSAQPLYTIWSYRKHWPWSSI*VVLGFF
Trigger: GAAGAAACCTAAAACCACCAATATAGAGCTCCAAGG...CCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGCCTTGGAGCTCTATATaGGTGGTTTTAGGTTTCTTC +
Preference number: 5 (lower is better)
Translates to: HLLLCPTFIHNMELQEALPWSSI*VVLGFF
Trigger: GAAGAAACCTAAAACCACCAATATAGAGCTCCAAGG...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp ACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGTTTAGGACCAAGATCTaGCCTTTTGCATTTCCTGTA +
Preference number: 5 (lower is better)
Translates to: TCFSAQPLYTIWSYRKHWFRTKI*PFAFPV
Trigger: TACAGGAAATGCAAAAGGCAAGATCTTGGTCCTAAA...CCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp CACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGACTCCAATTTTCTACTaGATTTTGGGCCCAAATGGA +
Preference number: 5 (lower is better)
Translates to: HLLLCPTFIHNMELQEALTPIFY*ILGPNG
Trigger: TCCATTTGGGCCCAAAATCAAGTAGAAAATTGGAGT...CAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp CCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGGAGGGGAAAGTTATTTTCATCCAACTCTTaGAAGTCTGGTGCAAATGCA +
Preference number: 5 (lower is better)
Translates to: PNLYTQYGATGSTGRGKLFSSNS*KSGANA
Trigger: TGCATTTGCACCAGACTTCAAAGAGTTGGATGAAAA...TAACTTTCCCCTCCCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp ACTTGCTTCTCTGCCCAACCTTTATACACAATATGGAGCTACAGGAAGCACTGGTTTTCATCCAACTCTTaGAAGTCTGGTGCAAATGCA +
Preference number: 5 (lower is better)
Translates to: TCFSAQPLYTIWSYRKHWFSSNS*KSGANA
Trigger: TGCATTTGCACCAGACTTCAAAGAGTTGGATGAAAA...CCAGTGCTTCCTGTAGCTCCATATTGTGTATAAAGGTTGGGCAGAGAAGCAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027700.15
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 90 bp ATGACCATCTCGGCTCCAACACAAAGAACAGACTGGATGGATGTGTaGACTAATTATTTTAGCAATGCCTCTGGTCAAGAAATCCCAAAT +
Preference number: 5 (lower is better)
Translates to: MTISAPTQRTDWMDV*TNYFSNASGQEIPN
Trigger: ATTTGGGATTTCTTGACCAGAGGCATTGCTAAAATAATTAGTGCACACATCCATCCAGTCTGTTCTTTGTGTTGGAGCCGAGATGGTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000189786.3
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS-3UTR CAA 90 bp AAAAGAACAGCAAATGCAGAGAGAGCCAAGGTGAGAAAGAGAAGGGTAAAAGCTATTTTCTACTTGATTTaGGGCCCAAATGGACACCAC +
Preference number: 5 (lower is better)
Translates to: KRTANAERAKVRKRRVKAIFYLI*GPNGHH
Trigger: GTGGTGTCCATTTGGGCCCAAAATCAAGTAGAAAAT...AGCTTTTACCCTTCTCTTTCTCACCTTGGCTCTCTCTGCATTTGCTGTTCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000027700.15
ENSMUST00000190997.7
CDS TCA 72 bp CACTGCTACAGAAGGCAGCGATGGGATCCACGCTGGTaGCATCCACTTCCTCATCTTCAGCAGCATCAGCCC +
Preference number: 6 (lower is better)
Translates to: HCYRRQRWDPRW*HPLPHLQQHQP
Trigger: GGGCTGATGCTGCTGAAGATGAGGAAGTGGATGTCACCAGCGTGGATCCCATCGCTGCCTTCTGTAGCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 72 bp AGGTTGCCAATGCTCTTTTCCCAGATATACAGCGCATaGTGCCTCGCAGAGCCCGCCACTATGTACTCCCCA +
Preference number: 6 (lower is better)
Translates to: RLPMLFSQIYSA*CLAEPATMYSP
Trigger: TGGGGAGTACATAGTGGCGGGCTCTGCGAGGCAGCATGCGCTGTATATCTGGGAAAAGAGCATTGGCAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 72 bp GCTCCTCCTGCTTTTGATCCTTTAGGCCGGCCTGCTTaGTTCTTCTTGGATTTGCCATCCCCCTTCACACCC +
Preference number: 6 (lower is better)
Translates to: APPAFDPLGRPA*FFLDLPSPFTP
Trigger: GGGTGTGAAGGGGGATGGCAAATCCAAGAAGAAGCAAGCAGGCCGGCCTAAAGGATCAAAAGCAGGAGGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027700.15
CDS GCA 72 bp GCTCCTCCTGCTGCCAAGGACTGGCTGAGTTCCGCCTaGACTTTACCCTTCGTTGATCCTTCCAGAGGTAAA +
Preference number: 6 (lower is better)
Translates to: APPAAKDWLSSA*TLPFVDPSRGK
Trigger: TTTACCTCTGGAAGGATCAACGAAGGGTAAAGTGCAGGCGGAACTCAGCCAGTCCTTGGCAGCAGGAGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190997.7
CDS CCA 72 bp CACTCCACTAGAGATAGAAGCTATGATGGGTCGGACTaGATGCCAAGCCACGTCCAGCAGGAGTTCCCCTCT +
Preference number: 6 (lower is better)
Translates to: HSTRDRSYDGSD*MPSHVQQEFPS
Trigger: AGAGGGGAACTCCTGCTGGACGTGGCTTGGCATCCAGTCCGACCCATCATAGCTTCTATCTCTAGTGGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CCA 72 bp CCCTTCATCCATCAAGGAGCTTGGGACTGCATCCGGTaGAGGGCCATACGGGTTTTCTTCAGGGTCTTCTAC +
Preference number: 6 (lower is better)
Translates to: PFIHQGAWDCIR*RAIRVFFRVFY
Trigger: GTAGAAGACCCTGAAGAAAACCCGTATGGCCCTCCACCGGATGCAGTCCCAAGCTCCTTGATGGATGAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CCA 72 bp AGCAGTTCTGAGATGGCTCCTCCTGCTGCCAAGGACTaGCTGAGTTCCGCCTGCACTTTACCCTTCGTTGAT +
Preference number: 6 (lower is better)
Translates to: SSSEMAPPAAKD*LSSACTLPFVD
Trigger: ATCAACGAAGGGTAAAGTGCAGGCGGAACTCAGCCAGTCCTTGGCAGCAGGAGGAGCCATCTCAGAACTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190997.7
CDS GCA 72 bp ATGGCTCCTCCTGCCAAGGACTGGCTGAGTTCCGCCTaGACTTTACCCTTCGTTGATCCTTCCAGAGGTAAA +
Preference number: 6 (lower is better)
Translates to: MAPPAKDWLSSA*TLPFVDPSRGK
Trigger: TTTACCTCTGGAAGGATCAACGAAGGGTAAAGTGCAGGCGGAACTCAGCCAGTCCTTGGCAGGAGGAGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
CDS GCA 72 bp TTCCATGGAGTCCTATTCACCAAGTCCTGCAGCTTCTaGATAGGCTCTGGCTCTCCATCCCTTCCACACGTT +
Preference number: 6 (lower is better)
Translates to: FHGVLFTKSCSF*IGSGSPSLPHV
Trigger: AACGTGTGGAAGGGATGGAGAGCCAGAGCCTATGCAGAAGCTGCAGGACTTGGTGAATAGGACTCCATGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 72 bp CTCTGGTCCCATGTAAGATCTTCACCAGGTTGCCAATaGTCTTTTCCCAGATATACAGCGCATGCTGCCTCG +
Preference number: 6 (lower is better)
Translates to: LWSHVRSSPGCQ*SFPRYTAHAAS
Trigger: CGAGGCAGCATGCGCTGTATATCTGGGAAAAGAGCATTGGCAACCTGGTGAAGATCTTACATGGGACCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 72 bp TTCTCTTTACCTTTTGATCCTTTAGGCCGGCCTGCTTaGTTCTTCTTGGATTTGCCATCCCCCTTCACACCC +
Preference number: 6 (lower is better)
Translates to: FSLPFDPLGRPA*FFLDLPSPFTP
Trigger: GGGTGTGAAGGGGGATGGCAAATCCAAGAAGAAGCAAGCAGGCCGGCCTAAAGGATCAAAAGGTAAAGAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CAA 90 bp ACCACGTTCAAATCCGAGTCATCGTCTACCGGCAGAACAACATGTTaGGAATCTGAAAGGGTCAACATGACAGGAGCAGATTTCATGGGA +
Preference number: 6 (lower is better)
Translates to: TTFKSESSSTGRTTC*ESERVNMTGADFMG
Trigger: TCCCATGAAATCTGCTCCTGTCATGTTGACCCTTTCAGATTCCAAACATGTTGTTCTGCCGGTAGACGATGACTCGGATTTGAACGTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000189786.3
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS TCA 72 bp GTCATCGTCTACCGGCAGAACAACATGTTTGGAATCTaGAAGGGTCAACATGACAGGAGCAGATTTCATGGG +
Preference number: 6 (lower is better)
Translates to: VIVYRQNNMFGI*KGQHDRSRFHG
Trigger: CCCATGAAATCTGCTCCTGTCATGTTGACCCTTTCAGATTCCAAACATGTTGTTCTGCCGGTAGACGATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000189786.3
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 72 bp AATCTCTCTGCCGTCATAGACTCTTATTATTCGATCTaGTGTGTTAATCAGGAAGCAACTCCCCTTCCGGGC +
Preference number: 6 (lower is better)
Translates to: NLSAVIDSYYSI*CVNQEATPLPG
Trigger: GCCCGGAAGGGGAGTTGCTTCCTGATTAACACAGCAGATCGAATAATAAGAGTCTATGACGGCAGAGAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CCA 72 bp TGGACTTTTAAGATGGGTGAAGGGAATCGAAACCTCTaGTCGCAATCTCCTGAAAGAACATCCCACTGTGAC +
Preference number: 6 (lower is better)
Translates to: WTFKMGEGNRNL*SQSPERTSHCD
Trigger: GTCACAGTGGGATGTTCTTTCAGGAGATTGCGACCAGAGGTTTCGATTCCCTTCACCCATCTTAAAAGTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000188575.7
ENSMUST00000189786.3
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS TCA 72 bp AATCAGGAAGCAACTCCCCTTCCGGGCAAACTCAATTaGTTTAATGGCGGTAGTATTGCTTGTCCCAGTTGT +
Preference number: 6 (lower is better)
Translates to: NQEATPLPGKLN*FNGGSIACPSC
Trigger: ACAACTGGGACAAGCAATACTACCGCCATTAAATCAATTGAGTTTGCCCGGAAGGGGAGTTGCTTCCTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS TCA 72 bp GACACTATGTTATCTGTAGAAGCACTCACAAGCTTATaGCCATCTCGGCTCCAACTGTTAAAGGTGCAGGTC +
Preference number: 6 (lower is better)
Translates to: DTMLSVEALTSL*PSRLQLLKVQV
Trigger: GACCTGCACCTTTAACAGTTGGAGCCGAGATGGTCATAAGCTTGTGAGTGCTTCTACAGATAACATAGTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000188575.7
CDS GCA 72 bp TCCTGTATAAATATATTCCCCTCGCCTATCAAAAGATaGCACCACGTTCAAATCCGAGTCATCGTCTACCGG +
Preference number: 6 (lower is better)
Translates to: SCINIFPSPIKR*HHVQIRVIVYR
Trigger: CCGGTAGACGATGACTCGGATTTGAACGTGGTGGCATCTTTTGATAGGCGAGGGGAATATATTTATACAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000189786.3
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 72 bp CTGGCTCTCCATCCCTTCCACACGTTAAAATCTCTCTaGCGTCATAGACTCTTATTATTCGATCTGCTGTGT +
Preference number: 6 (lower is better)
Translates to: LALHPFHTLKSL*RHRLLLFDLLC
Trigger: ACACAGCAGATCGAATAATAAGAGTCTATGACGGCAGAGAGATTTTAACGTGTGGAAGGGATGGAGAGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CCA 72 bp ACGGGTTTTCTTCAGGGTCTTCTACCTCAGGGGCAATaGGTAAATACAATAGAGCCTTTGAATCTTCCAGCT +
Preference number: 6 (lower is better)
Translates to: TGFLQGLLPQGQ*VNTIEPLNLPA
Trigger: AGCTGGAAGATTCAAAGGCTCTATTGTATTTACCCATTGCCCCTGAGGTAGAAGACCCTGAAGAAAACCCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS TCA 72 bp TTGAAGTCTGGTGCAAATGCACTCCAATTTTCTACTTaGTTTTGGGCCCAAATGGACACCACTCCACTAGAG +
Preference number: 6 (lower is better)
Translates to: LKSGANALQFST*FWAQMDTTPLE
Trigger: CTCTAGTGGAGTGGTGTCCATTTGGGCCCAAAATCAAGTAGAAAATTGGAGTGCATTTGCACCAGACTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS TCA 72 bp GACACTATGTTATCTGTAGAAGCACTCACAAGCTTATaGCCATCTCGGCTCCAACACAAAGAACAGACTGGA +
Preference number: 6 (lower is better)
Translates to: DTMLSVEALTSL*PSRLQHKEQTG
Trigger: TCCAGTCTGTTCTTTGTGTTGGAGCCGAGATGGTCATAAGCTTGTGAGTGCTTCTACAGATAACATAGTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000189786.3
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CCA 72 bp CCCAGTAGTGGATGGACTTCATCATTCGGCACTCCTTaGAGCTCTATATTGGTGGTTTTAGGTTTCTTCTTT +
Preference number: 6 (lower is better)
Translates to: PSSGWTSSFGTP*SSILVVLGFFF
Trigger: AAAGAAGAAACCTAAAACCACCAATATAGAGCTCCAAGGAGTGCCGAATGATGAAGTCCATCCACTACTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CCA 72 bp TGTTCTGATCTCGAGGATGATATTGGACTTTTAAGATaGGTGAAGGGAATCGAAACCTCTGGTCGCAATCTC +
Preference number: 6 (lower is better)
Translates to: CSDLEDDIGLLR*VKGIETSGRNL
Trigger: GAGATTGCGACCAGAGGTTTCGATTCCCTTCACCCATCTTAAAAGTCCAATATCATCCTCGAGATCAGAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000188575.7
ENSMUST00000189786.3
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CAA 72 bp GTCTGGTGCAAATGCACTCCAATTTTCTACTTGATTTaGGGCCCAAATGGACACCACTCCACTAGAGATAGA +
Preference number: 6 (lower is better)
Translates to: VWCKCTPIFYLI*GPNGHHSTRDR
Trigger: TCTATCTCTAGTGGAGTGGTGTCCATTTGGGCCCAAAATCAAGTAGAAAATTGGAGTGCATTTGCACCAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS GCA 72 bp TCGGCTCCAACACAAAGAACAGACTGGATGGATGTGTaGACTAATTATTTTAGCAATGCCTCTGGTCAAGAA +
Preference number: 6 (lower is better)
Translates to: SAPTQRTDWMDV*TNYFSNASGQE
Trigger: TTCTTGACCAGAGGCATTGCTAAAATAATTAGTGCACACATCCATCCAGTCTGTTCTTTGTGTTGGAGCCGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000189786.3
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CCA 72 bp CTTATGACCATCTCGGCTCCAACACAAAGAACAGACTaGATGGATGTGTGCACTAATTATTTTAGCAATGCC +
Preference number: 6 (lower is better)
Translates to: LMTISAPTQRTD*MDVCTNYFSNA
Trigger: GGCATTGCTAAAATAATTAGTGCACACATCCATCCAGTCTGTTCTTTGTGTTGGAGCCGAGATGGTCATAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000189786.3
ENSMUST00000190825.7
ENSMUST00000190997.7
CDS CAA 72 bp TTTGAAGTCTGGTGCAAATGCACTCCAATTTTCTACTaGATTTTGGGCCCAAATGGACACCACTCCACTAGA +
Preference number: 6 (lower is better)
Translates to: FEVWCKCTPIFY*ILGPNGHHSTR
Trigger: TCTAGTGGAGTGGTGTCCATTTGGGCCCAAAATCAAGTAGAAAATTGGAGTGCATTTGCACCAGACTTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027700.15
ENSMUST00000187505.7
ENSMUST00000190825.7
ENSMUST00000190997.7