RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RBBP4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057236

Ensembl transcript IDs: ENSMUST00000102598.4

Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACCTCCCAACTGCTGAGACTCCAGGTGTGTGTGCACTGTCAGCCATaGCCCAAGACACACCCCACCCCTCCTGTCCTGGACCTAACTCAC +
Preference number: 1 (lower is better)
Translates to: TSQLLRLQVCVHCQP*PKTHPTPPVLDLTH
Trigger: GTGAGTTAGGTCCAGGACAGGAGGGGTGGGGTGTGTCTTGGGTCATGGCTGACAGTGCACACACACCTGGAGTCTCAGCAGTTGGGAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR TCA 90 bp CAGGATGACCTTGAACTTCTGGTCTTGCCTCTACCTCCCAACTGCTaGGACTCCAGGTGTGTGTGCACTGTCAGCCATGACCCAAGACAC +
Preference number: 1 (lower is better)
Translates to: QDDLELLVLPLPPNC*DSRCVCTVSHDPRH
Trigger: GTGTCTTGGGTCATGGCTGACAGTGCACACACACCTGGAGTCTCAGCAGTTGGGAGGTAGAGGCAAGACCAGAAGTTCAAGGTCATCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CCA 90 bp CACTACCACCACCACCACCAGACCCCACTTATATATAGCCCCAAGTaGCCTAGAACTCACTCTTTAGACAACGTTGGCCCTGAACTCTGC +
Preference number: 1 (lower is better)
Translates to: HYHHHHQTPLIYSPK*PRTHSLDNVGPELC
Trigger: GCAGAGTTCAGGGCCAACGTTGTCTAAAGAGTGAGTTCTAGGCCACTTGGGGCTATATATAAGTGGGGTCTGGTGGTGGTGGTGGTAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CCA 90 bp CACACACAACAAAAACCAGACTTTGTTCAGCTACCCAGCCACAATTaGAGCCACCAACGAGGCTTTGCTGACTTAAACCCCCAGTTAAGA +
Preference number: 1 (lower is better)
Translates to: HTQQKPDFVQLPSHN*SHQRGFADLNPQLR
Trigger: TCTTAACTGGGGGTTTAAGTCAGCAAAGCCTCGTTGGTGGCTCCAATTGTGGCTGGGTAGCTGAACAAAGTCTGGTTTTTGTTGTGTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR GCA 90 bp TGTATATGGATCCCCATTACAGATGGTTGTGAACCACCATGTGGTTaGTGGGAATTGAATTCAGAACTTCTGGAGAGCAGTCAGTGCTCT +
Preference number: 1 (lower is better)
Translates to: CIWIPITDGCEPPCG*WELNSELLESSQCS
Trigger: AGAGCACTGACTGCTCTCCAGAAGTTCTGAATTCAATTCCCAGCAACCACATGGTGGTTCACAACCATCTGTAATGGGGATCCATATACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR TCA 90 bp AGCCTAGTACCTTTCAACCAAATCACACAAATCCACTTAGGAAGCTaGGGCAGGAGCATCATAAACTCAAAAGCTTTAACTCTAACTGTA +
Preference number: 1 (lower is better)
Translates to: SLVPFNQITQIHLGS*GRSIINSKALTLTV
Trigger: TACAGTTAGAGTTAAAGCTTTTGAGTTTATGATGCTCCTGCCTCAGCTTCCTAAGTGGATTTGTGTGATTTGGTTGAAAGGTACTAGGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR GCA 90 bp CATTATTCAGTTTTGCAAACAAGATCCACTTTCCACTTAAGTATCTaGTACTGGAATGTCATTTCTGGTCCCATGAAAACATGCTGCCTG +
Preference number: 1 (lower is better)
Translates to: HYSVLQTRSTFHLSI*YWNVISGPMKTCCL
Trigger: CAGGCAGCATGTTTTCATGGGACCAGAAATGACATTCCAGTAGCAGATACTTAAGTGGAAAGTGGATCTTGTTTGCAAAACTGAATAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CCA 90 bp CCCATTTTCTTGGGTAATAAACACAAAGGCTGTGGTTTCAGTAGTTaGGAGGATATAGAGCCTAGTACCTTTCAACCAAATCACACAAAT +
Preference number: 1 (lower is better)
Translates to: PIFLGNKHKGCGFSS*EDIEPSTFQPNHTN
Trigger: ATTTGTGTGATTTGGTTGAAAGGTACTAGGCTCTATATCCTCCCAACTACTGAAACCACAGCCTTTGTGTTTATTACCCAAGAAAATGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR-3UTR TCA 90 bp AAGTCCTCTGGAGATGACATCCCCTTAGCTGCTAAGCCATCTCTCCTGTCCCCAGTGCACTGTCAGCCATaGCCCAAGACACACCCCACC +
Preference number: 2 (lower is better)
Translates to: KSSGDDIPLAAKPSLLSPVHCQP*PKTHPT
Trigger: GGTGGGGTGTGTCTTGGGTCATGGCTGACAGTGCAC...TGGGGACAGGAGAGATGGCTTAGCAGCTAAGGGGATGTCATCTCCAGAGGACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR-3UTR GCA 90 bp AAGTCCTCTGGAGATGACATCCCCTTAGCTGCTAAGCCATCTCTCCTGTCCCCAGGTCCCATGAAAACATaGTGCCTGAAAACAGGCAGG +
Preference number: 2 (lower is better)
Translates to: KSSGDDIPLAAKPSLLSPGPMKT*CLKTGR
Trigger: CCTGCCTGTTTTCAGGCAGCATGTTTTCATGGGACC...TGGGGACAGGAGAGATGGCTTAGCAGCTAAGGGGATGTCATCTCCAGAGGACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR-3UTR CCA 90 bp TGTGCACTGTCAGCCATGACCCAAGACACACCCCACCCCTCCTGTCCTGGACCTTTCAATTTCCCTGACTaGAGTAAAGCTCTCTTTTAT +
Preference number: 2 (lower is better)
Translates to: CALSAMTQDTPHPSCPGPFNFPD*SKALFY
Trigger: ATAAAAGAGAGCTTTACTCCAGTCAGGGAAATTGAA...AGGTCCAGGACAGGAGGGGTGGGGTGTGTCTTGGGTCATGGCTGACAGTGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR-3UTR TCA 90 bp GGAACTAAACTGAAGTCCTCTGGAGATGACATCCCCTTAGCTGCTAAGCCATCTATCCACTTAGGAAGCTaGGGCAGGAGCATCATAAAC +
Preference number: 2 (lower is better)
Translates to: GTKLKSSGDDIPLAAKPSIHLGS*GRSIIN
Trigger: GTTTATGATGCTCCTGCCTCAGCTTCCTAAGTGGAT...AGATGGCTTAGCAGCTAAGGGGATGTCATCTCCAGAGGACTTCAGTTTAGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR-3UTR CCA 90 bp GGAACTAAACTGAAGTCCTCTGGAGATGACATCCCCTTAGCTGCTAAGCCATCTATATATAGCCCCAAGTaGCCTAGAACTCACTCTTTA +
Preference number: 2 (lower is better)
Translates to: GTKLKSSGDDIPLAAKPSIYSPK*PRTHSL
Trigger: TAAAGAGTGAGTTCTAGGCCACTTGGGGCTATATAT...AGATGGCTTAGCAGCTAAGGGGATGTCATCTCCAGAGGACTTCAGTTTAGTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR-3UTR CCA 90 bp GGAACTAAACTGAAGTCCTCTGGAGATGACATCCCCTTAGCTGCTAAGCCATCTCTGTCCCCATTTTCTTaGGTAATAAACACAAAGGCT +
Preference number: 2 (lower is better)
Translates to: GTKLKSSGDDIPLAAKPSLSPFS*VINTKA
Trigger: AGCCTTTGTGTTTATTACCCAAGAAAATGGGGACAG...AGATGGCTTAGCAGCTAAGGGGATGTCATCTCCAGAGGACTTCAGTTTAGTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR-3UTR TCA 90 bp CTGTCTGCTCGACTCTTTCGCCTCACTGTCATTATTCAGTTTTGCAAACAAGATCTATCACACTGCCTTTaGGATTCTTGGAAACCTATG +
Preference number: 2 (lower is better)
Translates to: LSARLFRLTVIIQFCKQDLSHCL*DSWKPM
Trigger: CATAGGTTTCCAAGAATCTCAAAGGCAGTGTGATAG...ATCTTGTTTGCAAAACTGAATAATGACAGTGAGGCGAAAGAGTCGAGCAGACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CAA 90 bp TTTAAACTCTGCCTTAAGCTGTCTATCACACTGCCTTTGAGATTCTaGGAAACCTATGTAGCTCTCGGGAGAAGACTTCAAGAATATGTA +
Preference number: 2 (lower is better)
Translates to: FKLCLKLSITLPLRF*ETYVALGRRLQEYV
Trigger: TACATATTCTTGAAGTCTTCTCCCGAGAGCTACATAGGTTTCCAAGAATCTCAAAGGCAGTGTGATAGACAGCTTAAGGCAGAGTTTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR-3UTR CCA 90 bp TTGAGATTCTTGGAAACCTATGTAGCTCTCGGGAGAAGACTTCAAGAATATGTATTGACAGTTCACCAGTaGAACAACTGCCAGGTAAAA +
Preference number: 2 (lower is better)
Translates to: LRFLETYVALGRRLQEYVLTVHQ*NNCQVK
Trigger: TTTTACCTGGCAGTTGTTCCACTGGTGAACTGTCAA...TACATATTCTTGAAGTCTTCTCCCGAGAGCTACATAGGTTTCCAAGAATCTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CAA 90 bp TGTTTTAAATTTAAACTCTGCCTTAAGCTGTCTATCACACTGCCTTaGAGATTCTTGGAAACCTATGTAGCTCTCGGGAGAAGACTTCAA +
Preference number: 2 (lower is better)
Translates to: CFKFKLCLKLSITLP*RFLETYVALGRRLQ
Trigger: TTGAAGTCTTCTCCCGAGAGCTACATAGGTTTCCAAGAATCTCAAAGGCAGTGTGATAGACAGCTTAAGGCAGAGTTTAAATTTAAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR-3UTR TCA 90 bp TGTCATTATTCAGTTTTGCAAACAAGATCCACTTTCCACTTAAGTATCTGCTACCACTCTTTCTCAACTTaGCAGTTCACCAGTGGAACA +
Preference number: 2 (lower is better)
Translates to: CHYSVLQTRSTFHLSICYHSFST*QFTSGT
Trigger: TGTTCCACTGGTGAACTGTCAAGTTGAGAAAGAGTG...GTAGCAGATACTTAAGTGGAAAGTGGATCTTGTTTGCAAAACTGAATAATGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR-3UTR TCA 90 bp TGTCATTATTCAGTTTTGCAAACAAGATCCACTTTCCACTTAAGTATCTGCTACAGCCATAAATGGTTCTaGGGTGAGAGTCATCTAGTC +
Preference number: 2 (lower is better)
Translates to: CHYSVLQTRSTFHLSICYSHKWF*GESHLV
Trigger: GACTAGATGACTCTCACCTCAGAACCATTTATGGCT...GTAGCAGATACTTAAGTGGAAAGTGGATCTTGTTTGCAAAACTGAATAATGACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CAA 90 bp TCTCGGGAGAAGACTTCAAGAATATGTAATTTTACCAAGGCTAGTTaGTGTACTCTATTCAGTAATGTCTTCAATTTCCCTGACTGGAGT +
Preference number: 2 (lower is better)
Translates to: SREKTSRICNFTKAS*CTLFSNVFNFPDWS
Trigger: ACTCCAGTCAGGGAAATTGAAGACATTACTGAATAGAGTACACAAACTAGCCTTGGTAAAATTACATATTCTTGAAGTCTTCTCCCGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR TCA 72 bp CTGCTGAGACTCCAGGTGTGTGTGCACTGTCAGCCATaGCCCAAGACACACCCCACCCCTCCTGTCCTGGAC +
Preference number: 3 (lower is better)
Translates to: LLRLQVCVHCQP*PKTHPTPPVLD
Trigger: GTCCAGGACAGGAGGGGTGGGGTGTGTCTTGGGTCATGGCTGACAGTGCACACACACCTGGAGTCTCAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CCA 72 bp CACCACCACCAGACCCCACTTATATATAGCCCCAAGTaGCCTAGAACTCACTCTTTAGACAACGTTGGCCCT +
Preference number: 3 (lower is better)
Translates to: HHHQTPLIYSPK*PRTHSLDNVGP
Trigger: AGGGCCAACGTTGTCTAAAGAGTGAGTTCTAGGCCACTTGGGGCTATATATAAGTGGGGTCTGGTGGTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR TCA 72 bp AACAAGCTTGTCCATTCCTGTGTCAGGGTGGGTCTGTaGGTACAGGGAACTAAACTGAAGTCCTCTGGAGAT +
Preference number: 3 (lower is better)
Translates to: NKLVHSCVRVGL*VQGTKLKSSGD
Trigger: ATCTCCAGAGGACTTCAGTTTAGTTCCCTGTACTCACAGACCCACCCTGACACAGGAATGGACAAGCTTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR-3UTR CAA 90 bp TACCAGCACTGGCAAGCAATTCACCCTGTAAAAGTACAAACACTGGCTGTTTTGTGGGTCAGGATGACCTaGAACTTCTGGTCTTGCCTC +
Preference number: 3 (lower is better)
Translates to: YQHWQAIHPVKVQTLAVLWVRMT*NFWSCL
Trigger: GAGGCAAGACCAGAAGTTCAAGGTCATCCTGACCCA...CAAAACAGCCAGTGTTTGTACTTTTACAGGGTGAATTGCTTGCCAGTGCTGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CCA 72 bp CCCATTACAGATGGTTGTGAACCACCATGTGGTTGCTaGGAATTGAATTCAGAACTTCTGGAGAGCAGTCAG +
Preference number: 3 (lower is better)
Translates to: PITDGCEPPCGC*ELNSELLESSQ
Trigger: CTGACTGCTCTCCAGAAGTTCTGAATTCAATTCCCAGCAACCACATGGTGGTTCACAACCATCTGTAATGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR TCA 72 bp AAGGGAAAAAGAGCCTTTTATCTTCCAGCAGAACCCTaGGTGATGGATGCATCACCATACCCTGAACTATCG +
Preference number: 3 (lower is better)
Translates to: KGKRAFYLPAEP*VMDASPYPELS
Trigger: CGATAGTTCAGGGTATGGTGATGCATCCATCACTCAGGGTTCTGCTGGAAGATAAAAGGCTCTTTTTCCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR TCA 72 bp GAAAAAGAGCCTTTTATCTTCCAGCAGAACCCTGAGTaGTGGATGCATCACCATACCCTGAACTATCGTGAA +
Preference number: 3 (lower is better)
Translates to: EKEPFIFQQNPE*WMHHHTLNYRE
Trigger: TTCACGATAGTTCAGGGTATGGTGATGCATCCATCACTCAGGGTTCTGCTGGAAGATAAAAGGCTCTTTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR-3UTR CAA 90 bp TTGAGATTCTTGGAAACCTATGTAGCTCTCGGGAGAAGACTTCAAGAATATGTAGGGCTTGTAGCATTGTaGGTGGCACCTATTGTAGCT +
Preference number: 3 (lower is better)
Translates to: LRFLETYVALGRRLQEYVGLVAL*VAPIVA
Trigger: AGCTACAATAGGTGCCACCAACAATGCTACAAGCCC...TACATATTCTTGAAGTCTTCTCCCGAGAGCTACATAGGTTTCCAAGAATCTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR TCA 72 bp TCATTACCCAAACTTTCCCAAAGCCATAAATGGTTCTaGGGTGAGAGTCATCTAGTCAGTCCAAGCAAAAGC +
Preference number: 3 (lower is better)
Translates to: SLPKLSQSHKWF*GESHLVSPSKS
Trigger: GCTTTTGCTTGGACTGACTAGATGACTCTCACCTCAGAACCATTTATGGCTTTGGGAAAGTTTGGGTAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR TCA 72 bp AGCCCAAATGTACTGCTTAGTCAATGTATAAAACAATaGACAAGCTTGTCCATTCCTGTGTCAGGGTGGGTC +
Preference number: 3 (lower is better)
Translates to: SPNVLLSQCIKQ*TSLSIPVSGWV
Trigger: GACCCACCCTGACACAGGAATGGACAAGCTTGTTCATTGTTTTATACATTGACTAAGCAGTACATTTGGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CCA 72 bp TTAGCTGCTAAGCCATCTCTCCTGTCCCCATTTTCTTaGGTAATAAACACAAAGGCTGTGGTTTCAGTAGTT +
Preference number: 3 (lower is better)
Translates to: LAAKPSLLSPFS*VINTKAVVSVV
Trigger: AACTACTGAAACCACAGCCTTTGTGTTTATTACCCAAGAAAATGGGGACAGGAGAGATGGCTTAGCAGCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CCA 72 bp CAAACAAGATCCACTTTCCACTTAAGTATCTGCTACTaGAATGTCATTTCTGGTCCCATGAAAACATGCTGC +
Preference number: 3 (lower is better)
Translates to: QTRSTFHLSICY*NVISGPMKTCC
Trigger: GCAGCATGTTTTCATGGGACCAGAAATGACATTCCAGTAGCAGATACTTAAGTGGAAAGTGGATCTTGTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR GCA 72 bp TTTAACTCTAACTGTATGTATGCCACCATATCTGTCTaGTCGACTCTTTCGCCTCACTGTCATTATTCAGTT +
Preference number: 3 (lower is better)
Translates to: FNSNCMYATISV*STLSPHCHYSV
Trigger: AACTGAATAATGACAGTGAGGCGAAAGAGTCGAGCAGACAGATATGGTGGCATACATACAGTTAGAGTTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CCA 72 bp AATGTTGGGGTCAAAGGGCAGCCAATTTCTGCTATATaGATCCACAACTTTGTGCTACAGGTATTAGATTTT +
Preference number: 3 (lower is better)
Translates to: NVGVKGQPISAI*IHNFVLQVLDF
Trigger: AAAATCTAATACCTGTAGCACAAAGTTGTGGATCCATATAGCAGAAATTGGCTGCCCTTTGACCCCAACATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CCA 72 bp TTGGGTAATAAACACAAAGGCTGTGGTTTCAGTAGTTaGGAGGATATAGAGCCTAGTACCTTTCAACCAAAT +
Preference number: 3 (lower is better)
Translates to: LGNKHKGCGFSS*EDIEPSTFQPN
Trigger: ATTTGGTTGAAAGGTACTAGGCTCTATATCCTCCCAACTACTGAAACCACAGCCTTTGTGTTTATTACCCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR GCA 72 bp GTTTTGCAAACAAGATCCACTTTCCACTTAAGTATCTaGTACTGGAATGTCATTTCTGGTCCCATGAAAACA +
Preference number: 3 (lower is better)
Translates to: VLQTRSTFHLSI*YWNVISGPMKT
Trigger: TGTTTTCATGGGACCAGAAATGACATTCCAGTAGCAGATACTTAAGTGGAAAGTGGATCTTGTTTGCAAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CCA 72 bp AGAAACAAGAAAACATTTATTAAAGGATCACTAGGATaGACTTTCCCCCAACAGATAAGAGTACCAGCACTG +
Preference number: 3 (lower is better)
Translates to: RNKKTFIKGSLG*TFPQQIRVPAL
Trigger: CAGTGCTGGTACTCTTATCTGTTGGGGGAAAGTCCATCCTAGTGATCCTTTAATAAATGTTTTCTTGTTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
CDS-3UTR GCA 90 bp AAGTCCTCTGGAGATGACATCCCCTTAGCTGCTAAGCCATCTCTCCTGTCCCCAGACTCGTGGAGCAGATaGCAGGACACGTCCTCCACT +
Preference number: 4 (lower is better)
Translates to: KSSGDDIPLAAKPSLLSPDSWSR*QDTSST
Trigger: AGTGGAGGACGTGTCCTGGCATCTGCTCCACGAGTC...TGGGGACAGGAGAGATGGCTTAGCAGCTAAGGGGATGTCATCTCCAGAGGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
CDS-3UTR GCA 90 bp AAGTCCTCTGGAGATGACATCCCCTTAGCTGCTAAGCCATCTCTCCTGTCCCCATGGTGGGCCATCCTCTaGATCTTCTGGGGACTGCTC +
Preference number: 4 (lower is better)
Translates to: KSSGDDIPLAAKPSLLSPWWAIL*IFWGLL
Trigger: GAGCAGTCCCCAGAAGATGCAGAGGATGGCCCACCA...TGGGGACAGGAGAGATGGCTTAGCAGCTAAGGGGATGTCATCTCCAGAGGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
CDS-3UTR GCA 90 bp ACAAAGTCTGTGCCTCAAACCAATGTTAAATCCATCTCGGGGTTCAGAGGAAAACACGTCCTCCACTACTaGTGTATGCCCCGTGAAGAT +
Preference number: 4 (lower is better)
Translates to: TKSVPQTNVKSISGFRGKHVLHY*CMPRED
Trigger: ATCTTCACGGGGCATACAGCAGTAGTGGAGGACGTG...TTTTCCTCTGAACCCCGAGATGGATTTAACATTGGTTTGAGGCACAGACTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CAA 72 bp ACAGATGGTTGTGAACCACCATGTGGTTGCTGGGAATaGAATTCAGAACTTCTGGAGAGCAGTCAGTGCTCT +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCGCWE*NSELLESSQCS
Trigger: AGAGCACTGACTGCTCTCCAGAAGTTCTGAATTCAATTCCCAGCAACCACATGGTGGTTCACAACCATCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CAA 72 bp GTTCTACATACACACTTCTCAGGCACTCAAGTTCCCTaGGTAAAGATCAAAAGGCAACCCTATCACCAACTT +
Preference number: 4 (lower is better)
Translates to: VLHTHFSGTQVP*VKIKRQPYHQL
Trigger: AAGTTGGTGATAGGGTTGCCTTTTGATCTTTACCAAGGGAACTTGAGTGCCTGAGAAGTGTGTATGTAGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
3UTR CAA 72 bp TGCTCGACTCTTTCGCCTCACTGTCATTATTCAGTTTaGCAAACAAGATCCACTTTCCACTTAAGTATCTGC +
Preference number: 4 (lower is better)
Translates to: CSTLSPHCHYSV*QTRSTFHLSIC
Trigger: GCAGATACTTAAGTGGAAAGTGGATCTTGTTTGCAAAACTGAATAATGACAGTGAGGCGAAAGAGTCGAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4
CDS-3UTR TCA 90 bp TTGAGATTCTTGGAAACCTATGTAGCTCTCGGGAGAAGACTTCAAGAATATGTACAAAGGAGTGCAACTTaGGTTTCAGATTCCTCAGAT +
Preference number: 4 (lower is better)
Translates to: LRFLETYVALGRRLQEYVQRSAT*VSDSSD
Trigger: ATCTGAGGAATCTGAAACTCAAGTTGCACTCCTTTG...TACATATTCTTGAAGTCTTCTCCCGAGAGCTACATAGGTTTCCAAGAATCTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102598.4