Pregenerated sensors for RBAK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061898Ensembl transcript IDs: ENSMUST00000049861.11, ENSMUST00000165318.4
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAGCGTGGATGCTCAGCTCGTGAATCTTGCAGAATGTCTATAGCATaGAAAAGGCCCAGAATCCCAGCACCACATATATTGAAAATTGGG | + |
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Preference number: 1 (lower is better) Translates to: ERGCSARESCRMSIA*KRPRIPAPHILKIG Trigger: CCCAATTTTCAATATATGTGGTGCTGGGATTCTGGGCCTTTTGCATGCTATAGACATTCTGCAAGATTCACGAGCTGAGCATCCACGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR TCA 90 bp | TCTAGAACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTGCTTTTCTTAAGAACTaGGATGTCACTGGGCAGTGG | + |
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Preference number: 2 (lower is better) Translates to: SRTAEVPCFSHPHAQLLAAFLKN*DVTGQW Trigger: CCACTGCCCAGTGACATCTCAGTTCTTAAGAAAAGC...AGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTTCTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR GCA 90 bp | TCTAGAACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTCATACGGTCATGGGTTaGTTCACAGATTCCTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: SRTAEVPCFSHPHAQLLAHTVMG*FTDSSL Trigger: CAGAGAGGAATCTGTGAAGCAACCCATGACCGTATG...AGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTTCTAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR TCA 90 bp | ACCACTCTACGGGTAAGCACCGACATAGAAAGCTATGTACTTCCCTATCAGCTAGTTATACTCAGGAGCTaGCAGCTCACAGCAGAACTC | + |
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Preference number: 2 (lower is better) Translates to: TTLRVSTDIESYVLPYQLVILRS*QLTAEL Trigger: GAGTTCTGCTGTGAGCTGTCAGCTCCTGAGTATAAC...TAGCTGATAGGGAAGTACATAGCTTTCTATGTCGGTGCTTACCCGTAGAGTGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR GCA 90 bp | TCTAGAACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTAGAATGTCTATAGCATaGAAAAGGCCCAGAATCCCA | + |
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Preference number: 2 (lower is better) Translates to: SRTAEVPCFSHPHAQLLARMSIA*KRPRIP Trigger: TGGGATTCTGGGCCTTTTGCATGCTATAGACATTCT...AGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTTCTAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR GCA 90 bp | TCTAGAACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTTCAGCTCGTGAATCTTaGAGAATGTCTATAGCATGC | + |
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Preference number: 2 (lower is better) Translates to: SRTAEVPCFSHPHAQLLASARES*RMSIAC Trigger: GCATGCTATAGACATTCTGCAAGATTCACGAGCTGA...AGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTTCTAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR GCA 90 bp | ACCACTCTACGGGTAAGCACCGACATAGAAAGCTATGTACTTCCCTATCAGCTAACTCAAGAGCGTGGATaGTCAGCTCGTGAATCTTGC | + |
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Preference number: 2 (lower is better) Translates to: TTLRVSTDIESYVLPYQLTQERG*SARESC Trigger: GCAAGATTCACGAGCTGAGCATCCACGCTCTTGAGT...TAGCTGATAGGGAAGTACATAGCTTTCTATGTCGGTGCTTACCCGTAGAGTGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR TCA 90 bp | AACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGTCACAGATTCCTCTCTaGAAGCTCAAGTTAAAATGG | + |
|
Preference number: 2 (lower is better) Translates to: NSRSAVFQSPSCSTAGFMSQIPL*KLKLKW Trigger: CCATTTTAACTTGAGCTTTCAGAGAGGAATCTGTGA...CATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR TCA 90 bp | TCTAGAACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTTCACAGATTCCTCTCTaGAAGCTCAAGTTAAAATGG | + |
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Preference number: 2 (lower is better) Translates to: SRTAEVPCFSHPHAQLLASQIPL*KLKLKW Trigger: CCATTTTAACTTGAGCTTTCAGAGAGGAATCTGTGA...AGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTTCTAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR GCA 90 bp | ACCACTCTACGGGTAAGCACCGACATAGAAAGCTATGTACTTCCCTATCAGCTATTTCAGTCACCCTCATaGTCAACTGCTGGCTTCATG | + |
|
Preference number: 2 (lower is better) Translates to: TTLRVSTDIESYVLPYQLFQSPS*STAGFM Trigger: CATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAA...TAGCTGATAGGGAAGTACATAGCTTTCTATGTCGGTGCTTACCCGTAGAGTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR GCA 90 bp | AAAAACCACTCTACGGGTAAGCACCGACATAGAAAGCTATGTACTTCCCTATCACTAGAACAGCAGAAGTaGCGTGTTTCAGTCACCCTC | + |
|
Preference number: 2 (lower is better) Translates to: KNHSTGKHRHRKLCTSLSLEQQK*RVSVTL Trigger: GAGGGTGACTGAAACACGGCACTTCTGCTGTTCTAG...TGATAGGGAAGTACATAGCTTTCTATGTCGGTGCTTACCCGTAGAGTGGTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR GCA 90 bp | TTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGACTTCATTTTATAAGTTTACTCAAGAGCGTGGATaGTCAGCTCGTGAATCTTGC | + |
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Preference number: 2 (lower is better) Translates to: FQSPSCSTAGFMTSFYKFTQERG*SARESC Trigger: GCAAGATTCACGAGCTGAGCATCCACGCTCTTGAGT...AAACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR GCA 90 bp | ACCACTCTACGGGTAAGCACCGACATAGAAAGCTATGTACTTCCCTATCAGCTAATTCAAAGCCGAGATTaGGAAACATTGCATAGAGAC | + |
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Preference number: 2 (lower is better) Translates to: TTLRVSTDIESYVLPYQLIQSRD*ETLHRD Trigger: GTCTCTATGCAATGTTTCGCAATCTCGGCTTTGAAT...TAGCTGATAGGGAAGTACATAGCTTTCTATGTCGGTGCTTACCCGTAGAGTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR TCA 90 bp | TTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGACTTCATTTTATAAGTTTGCTTTTCTTAAGAACTaGGATGTCACTGGGCAGTGG | + |
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Preference number: 2 (lower is better) Translates to: FQSPSCSTAGFMTSFYKFAFLKN*DVTGQW Trigger: CCACTGCCCAGTGACATCTCAGTTCTTAAGAAAAGC...AAACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR GCA 90 bp | TTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGACTTCATTTTATAAGTTTAGAATGTCTATAGCATaGAAAAGGCCCAGAATCCCA | + |
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Preference number: 2 (lower is better) Translates to: FQSPSCSTAGFMTSFYKFRMSIA*KRPRIP Trigger: TGGGATTCTGGGCCTTTTGCATGCTATAGACATTCT...AAACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR GCA 90 bp | TTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGACTTCATTTTATAAGTTTGAACTCATAGCTTCTTaGATCTTTTCCATGAACACC | + |
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Preference number: 2 (lower is better) Translates to: FQSPSCSTAGFMTSFYKFELIAS*IFSMNT Trigger: GGTGTTCATGGAAAAGATGCAAGAAGCTATGAGTTC...AAACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR GCA 72 bp | AGAGACTGTTCAATTGCGTGTCTAGAACAGCAGAAGTaGCGTGTTTCAGTCACCCTCATGCTCAACTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: RDCSIACLEQQK*RVSVTLMLNCW Trigger: CCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTTCTAGACACGCAATTGAACAGTCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR GCA 72 bp | CACACTCAAGAGCGTGGATGCTCAGCTCGTGAATCTTaGAGAATGTCTATAGCATGCAAAAGGCCCAGAATC | + |
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Preference number: 3 (lower is better) Translates to: HTQERGCSARES*RMSIACKRPRI Trigger: GATTCTGGGCCTTTTGCATGCTATAGACATTCTGCAAGATTCACGAGCTGAGCATCCACGCTCTTGAGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR GCA 72 bp | TGCTCAGCTCGTGAATCTTGCAGAATGTCTATAGCATaGAAAAGGCCCAGAATCCCAGCACCACATATATTG | + |
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Preference number: 3 (lower is better) Translates to: CSARESCRMSIA*KRPRIPAPHIL Trigger: CAATATATGTGGTGCTGGGATTCTGGGCCTTTTGCATGCTATAGACATTCTGCAAGATTCACGAGCTGAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR-3UTR CAA 90 bp | TTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGACTTCATTTTATAAGTTTGGAACTCATAGCTTCTaGCATCTTTTCCATGAACAC | + |
|
Preference number: 3 (lower is better) Translates to: FQSPSCSTAGFMTSFYKFGTHSF*HLFHEH Trigger: GTGTTCATGGAAAAGATGCAAGAAGCTATGAGTTCC...AAACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR TCA 72 bp | TGTTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATaGCTTCATTTTATAAGTTTATTCGGAACTCATAGC | + |
|
Preference number: 3 (lower is better) Translates to: CFSHPHAQLLAS*LHFISLFGTHS Trigger: GCTATGAGTTCCGAATAAACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| 3UTR TCA 72 bp | CCATGTACCCACTGTAACAGTCATTTTAATCCTTGCTaGCATGTTCTCACAAATGATTCAAAGCCGAGATTG | + |
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Preference number: 3 (lower is better) Translates to: PCTHCNSHFNPC*HVLTNDSKPRL Trigger: CAATCTCGGCTTTGAATCATTTGTGAGAACATGTCAGCAAGGATTAAAATGACTGTTACAGTGGGTACATGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | CTGGGCAGTGGTGGTGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCACTGAGCTGGGGGAAATaGGGGCTGTTTCGAGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: LGSGGAHTFNPSTREAEALSWGK*GLFRGC Trigger: ACACCCTCGAAACAGCCCTCATTTCCCCCAGCTCAG...TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | CTGGGCAGTGGTGGTGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCATCCTCTGGTGGAGAGTaGGGTGTGTCTTCTGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LGSGGAHTFNPSTREAEASSGGE*GVSSGR Trigger: TCTGCCAGAAGACACACCTCACTCTCCACCAGAGGA...TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | CTGGGCAGTGGTGGTGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCACCGGTGTGGACCCTTTaGTGTCTGAAGAGGGATGAG | + |
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Preference number: 4 (lower is better) Translates to: LGSGGAHTFNPSTREAEAPVWTL*CLKRDE Trigger: CTCATCCCTCTTCAGACATCAAAGGGTCCACACCGG...TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | CTGGGCAGTGGTGGTGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAAGTCCGACATCTGGATaGAGTCTGGTCCAGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: LGSGGAHTFNPSTREAEASPTSG*SLVQSL Trigger: GAGACTCTGGACCAGACTTCATCCAGATGTCGGACT...TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR CCA 90 bp | CTGGGCAGTGGTGGTGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCACATCTGGATGAAGTCTaGTCCAGAGTCTCCCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: LGSGGAHTFNPSTREAEAHLDEV*SRVSPV Trigger: GACTGGGGAGACTCTGGACCAGACTTCATCCAGATG...TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR GCA 90 bp | CTGGGCAGTGGTGGTGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCTTCTCCTCTAAGTaGGATCTCCGATGTACAGTG | + |
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Preference number: 4 (lower is better) Translates to: LGSGGAHTFNPSTREAEAGFSSK*DLRCTV Trigger: CACTGTACATCGGAGATCGCACTTAGAGGAGAAGCC...TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR CCA 90 bp | CTGGGCAGTGGTGGTGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCACTGAAGTCCGACATCTaGATGAAGTCTGGTCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: LGSGGAHTFNPSTREAEALKSDI*MKSGPE Trigger: CTCTGGACCAGACTTCATCCAGATGTCGGACTTCAG...TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | AACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGCAGGAGACACAGCTGTaGGCACCTGAGCTGGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: NSRSAVFQSPSCSTAGFMQETQL*APELGE Trigger: TTCCCCCAGCTCAGGTGCTCACAGCTGTGTCTCCTG...CATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | CTGGGCAGTGGTGGTGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCACTCTCTCACGAGCCATaGAAACACTTTCACTGTCTA | + |
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Preference number: 4 (lower is better) Translates to: LGSGGAHTFNPSTREAEALSHEP*KHFHCL Trigger: TAGACAGTGAAAGTGTTTTCATGGCTCGTGAGAGAG...TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | AACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGCCGGTGTGGACCCTTTaGTGTCTGAAGAGGGATGAG | + |
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Preference number: 4 (lower is better) Translates to: NSRSAVFQSPSCSTAGFMPVWTL*CLKRDE Trigger: CTCATCCCTCTTCAGACATCAAAGGGTCCACACCGG...CATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | ACCACTCTACGGGTAAGCACCGACATAGAAAGCTATGTACTTCCCTATCAGCTAACAGCTGTGAGCACCTaGGCTGGGGGAAATGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: TTLRVSTDIESYVLPYQLTAVST*AGGNEG Trigger: GCCCTCATTTCCCCCAGCTCAGGTGCTCACAGCTGT...TAGCTGATAGGGAAGTACATAGCTTTCTATGTCGGTGCTTACCCGTAGAGTGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | CTGGGCAGTGGTGGTGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAATATTTTCATCGTGTTaGGAGGAGTTACCCTCATCT | + |
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Preference number: 4 (lower is better) Translates to: LGSGGAHTFNPSTREAEAIFSSC*EELPSS Trigger: AGATGAGGGTAACTCCTCTCAACACGATGAAAATAT...TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | CTGGGCAGTGGTGGTGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAAAGCAGAGTTTAGATTaGAGGTTTTCCCACATTCTG | + |
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Preference number: 4 (lower is better) Translates to: LGSGGAHTFNPSTREAEAKQSLD*RFSHIL Trigger: CAGAATGTGGGAAAACCTTCAATCTAAACTCTGCTT...TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR GCA 90 bp | TCTAGAACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTCTGGACTCTCTCTTCTaGATGGACCTTCCAGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: SRTAEVPCFSHPHAQLLALDSLF*MDLPVP Trigger: AGGCACTGGAAGGTCCATGCAGAAGAGAGAGTCCAG...AGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTTCTAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR CCA 90 bp | TCTAGAACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTCTGAAGTCCGACATCTaGATGAAGTCTGGTCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: SRTAEVPCFSHPHAQLLALKSDI*MKSGPE Trigger: CTCTGGACCAGACTTCATCCAGATGTCGGACTTCAG...AGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTTCTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | GTCTATAGCATGCAAAAGGCCCAGAATCCCAGCACCACATATATTGAAAATTGGCAGGAGACACAGCTGTaGGCACCTGAGCTGGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: VYSMQKAQNPSTTYIENWQETQL*APELGE Trigger: TTCCCCCAGCTCAGGTGCTCACAGCTGTGTCTCCTG...CCAATTTTCAATATATGTGGTGCTGGGATTCTGGGCCTTTTGCATGCTATAGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | TCTAGAACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTTCCTCTGGTGCTGTGTaGGGTGTAACTTCTGACAAA | + |
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Preference number: 4 (lower is better) Translates to: SRTAEVPCFSHPHAQLLASSGAV*GVTSDK Trigger: TTTGTCAGAAGTTACACCTCACACAGCACCAGAGGA...AGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTTCTAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR GCA 90 bp | ACCACTCTACGGGTAAGCACCGACATAGAAAGCTATGTACTTCCCTATCAGCTACTGGACTCTCTCTTCTaGATGGACCTTCCAGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: TTLRVSTDIESYVLPYQLLDSLF*MDLPVP Trigger: AGGCACTGGAAGGTCCATGCAGAAGAGAGAGTCCAG...TAGCTGATAGGGAAGTACATAGCTTTCTATGTCGGTGCTTACCCGTAGAGTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | TATAGCATGCAAAAGGCCCAGAATCCCAGCACCACATATATTGAAAATTGGGGGAGTCCGACATCTGGATaGAGTCTGGTCCAGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: YSMQKAQNPSTTYIENWGSPTSG*SLVQSL Trigger: GAGACTCTGGACCAGACTTCATCCAGATGTCGGACT...CCCCCAATTTTCAATATATGTGGTGCTGGGATTCTGGGCCTTTTGCATGCTATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | AACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGATGTCTGAAGAGGGATaGGTTATGAGAGAAGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: NSRSAVFQSPSCSTAGFMMSEEG*VMREGL Trigger: AAGACCTTCTCTCATAACTCATCCCTCTTCAGACAT...CATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR CCA 90 bp | TATAGCATGCAAAAGGCCCAGAATCCCAGCACCACATATATTGAAAATTGGGGGCATCTGGATGAAGTCTaGTCCAGAGTCTCCCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: YSMQKAQNPSTTYIENWGHLDEV*SRVSPV Trigger: GACTGGGGAGACTCTGGACCAGACTTCATCCAGATG...CCCCCAATTTTCAATATATGTGGTGCTGGGATTCTGGGCCTTTTGCATGCTATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | TTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGACTTCATTTTATAAGTTTCTGAGCTGGGGGAAATaGGGGCTGTTTCGAGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: FQSPSCSTAGFMTSFYKFLSWGK*GLFRGC Trigger: ACACCCTCGAAACAGCCCTCATTTCCCCCAGCTCAG...AAACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | ACCACTCTACGGGTAAGCACCGACATAGAAAGCTATGTACTTCCCTATCAGCTAACTGCTAATCAGTTCTaGAACAGACTCCAGGGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: TTLRVSTDIESYVLPYQLTANQF*NRLQGL Trigger: GAGACCCTGGAGTCTGTTTCAGAACTGATTAGCAGT...TAGCTGATAGGGAAGTACATAGCTTTCTATGTCGGTGCTTACCCGTAGAGTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | TCAGGAGCTGACAGCTCACAGCAGAACTCCCTGATATGTAAATACGATTTAAATTCCTCTGGTGGAGAGTaGGGTGTGTCTTCTGGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: SGADSSQQNSLICKYDLNSSGGE*GVSSGR Trigger: TCTGCCAGAAGACACACCTCACTCTCCACCAGAGGA...ATTTAAATCGTATTTACATATCAGGGAGTTCTGCTGTGAGCTGTCAGCTCCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | TATAGCATGCAAAAGGCCCAGAATCCCAGCACCACATATATTGAAAATTGGGGGGGACCCTTTGATGTCTaGAGAGGGATGAGTTATGAG | + |
|
Preference number: 4 (lower is better) Translates to: YSMQKAQNPSTTYIENWGGPFDV*RGMSYE Trigger: CTCATAACTCATCCCTCTTCAGACATCAAAGGGTCC...CCCCCAATTTTCAATATATGTGGTGCTGGGATTCTGGGCCTTTTGCATGCTATA 46% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | AAAAACCACTCTACGGGTAAGCACCGACATAGAAAGCTATGTACTTCCCTATCAGGACCCTTTGATGTCTaGAGAGGGATGAGTTATGAG | + |
|
Preference number: 4 (lower is better) Translates to: KNHSTGKHRHRKLCTSLSGPFDV*RGMSYE Trigger: CTCATAACTCATCCCTCTTCAGACATCAAAGGGTCC...TGATAGGGAAGTACATAGCTTTCTATGTCGGTGCTTACCCGTAGAGTGGTTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR GCA 90 bp | TCAGGAGCTGACAGCTCACAGCAGAACTCCCTGATATGTAAATACGATTTAAATGGCTTCTCCTCTAAGTaGGATCTCCGATGTACAGTG | + |
|
Preference number: 4 (lower is better) Translates to: SGADSSQQNSLICKYDLNGFSSK*DLRCTV Trigger: CACTGTACATCGGAGATCGCACTTAGAGGAGAAGCC...ATTTAAATCGTATTTACATATCAGGGAGTTCTGCTGTGAGCTGTCAGCTCCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | TCAGGAGCTGACAGCTCACAGCAGAACTCCCTGATATGTAAATACGATTTAAATACTGCTAATCAGTTCTaGAACAGACTCCAGGGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: SGADSSQQNSLICKYDLNTANQF*NRLQGL Trigger: GAGACCCTGGAGTCTGTTTCAGAACTGATTAGCAGT...ATTTAAATCGTATTTACATATCAGGGAGTTCTGCTGTGAGCTGTCAGCTCCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | TCAGGAGCTGACAGCTCACAGCAGAACTCCCTGATATGTAAATACGATTTAAATTCCTCTGGTGCTGTGTaGGGTGTAACTTCTGACAAA | + |
|
Preference number: 4 (lower is better) Translates to: SGADSSQQNSLICKYDLNSSGAV*GVTSDK Trigger: TTTGTCAGAAGTTACACCTCACACAGCACCAGAGGA...ATTTAAATCGTATTTACATATCAGGGAGTTCTGCTGTGAGCTGTCAGCTCCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | ACCACTCTACGGGTAAGCACCGACATAGAAAGCTATGTACTTCCCTATCAGCTAAAGCAGAGTTTAGATTaGAGGTTTTCCCACATTCTG | + |
|
Preference number: 4 (lower is better) Translates to: TTLRVSTDIESYVLPYQLKQSLD*RFSHIL Trigger: CAGAATGTGGGAAAACCTTCAATCTAAACTCTGCTT...TAGCTGATAGGGAAGTACATAGCTTTCTATGTCGGTGCTTACCCGTAGAGTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR CCA 90 bp | TTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGACTTCATTTTATAAGTTTACTCTCTCTTCTGCATaGACCTTCCAGTGCCTAATG | + |
|
Preference number: 4 (lower is better) Translates to: FQSPSCSTAGFMTSFYKFTLSSA*TFQCLM Trigger: CATTAGGCACTGGAAGGTCCATGCAGAAGAGAGAGT...AAACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | GTCTATAGCATGCAAAAGGCCCAGAATCCCAGCACCACATATATTGAAAATTGGGGTCATAAACTTTACTaGTTTCCAAATGCCTCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: VYSMQKAQNPSTTYIENWGHKLY*FPNASE Trigger: CTCAGAGGCATTTGGAAATCAGTAAAGTTTATGACC...CCAATTTTCAATATATGTGGTGCTGGGATTCTGGGCCTTTTGCATGCTATAGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | GTCTATAGCATGCAAAAGGCCCAGAATCCCAGCACCACATATATTGAAAATTGGATATTTTCATCGTGTTaGGAGGAGTTACCCTCATCT | + |
|
Preference number: 4 (lower is better) Translates to: VYSMQKAQNPSTTYIENWIFSSC*EELPSS Trigger: AGATGAGGGTAACTCCTCTCAACACGATGAAAATAT...CCAATTTTCAATATATGTGGTGCTGGGATTCTGGGCCTTTTGCATGCTATAGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | TTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGACTTCATTTTATAAGTTTCTCTCTCACGAGCCATaGAAACACTTTCACTGTCTA | + |
|
Preference number: 4 (lower is better) Translates to: FQSPSCSTAGFMTSFYKFLSHEP*KHFHCL Trigger: TAGACAGTGAAAGTGTTTTCATGGCTCGTGAGAGAG...AAACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | TCAGGAGCTGACAGCTCACAGCAGAACTCCCTGATATGTAAATACGATTTAAATATGTCTGAAGAGGGATaGGTTATGAGAGAAGGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: SGADSSQQNSLICKYDLNMSEEG*VMREGL Trigger: AAGACCTTCTCTCATAACTCATCCCTCTTCAGACAT...ATTTAAATCGTATTTACATATCAGGGAGTTCTGCTGTGAGCTGTCAGCTCCTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR GCA 90 bp | TTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGACTTCATTTTATAAGTTTCAGGGCTCTTCTCCCTaGTCCAACTTAATAATCATG | + |
|
Preference number: 4 (lower is better) Translates to: FQSPSCSTAGFMTSFYKFQGSSP*SNLIIM Trigger: CATGATTATTAAGTTGGAGCAGGGAGAAGAGCCCTG...AAACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR TCA 90 bp | TTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGACTTCATTTTATAAGTTTGGTCATAAACTTTACTaGTTTCCAAATGCCTCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: FQSPSCSTAGFMTSFYKFGHKLY*FPNASE Trigger: CTCAGAGGCATTTGGAAATCAGTAAAGTTTATGACC...AAACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS CCA 90 bp | GGGGCACACTGCAGCGGGGATGGCTTCCCACACTCGCCACACTCCTaGACTCTCTCTTCTGCATGGACCTTCCAGTGCCTAATGAAAGCA | + |
|
Preference number: 5 (lower is better) Translates to: GAHCSGDGFPHSPHS*TLSSAWTFQCLMKA Trigger: TGCTTTCATTAGGCACTGGAAGGTCCATGCAGAAGAGAGAGTCCAGGAGTGTGGCGAGTGTGGGAAGCCATCCCCGCTGCAGTGTGCCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR CAA 90 bp | CTGGGCAGTGGTGGTGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCATTACCCTCATCTTGGTaGAAGTCTTCAAGGCTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: LGSGGAHTFNPSTREAEALPSSW*KSSRLS Trigger: AGAAAGCCTTGAAGACTTCAACCAAGATGAGGGTAA...TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS TCA 90 bp | TCTCGCCAATTTCCTCAATTCCTTCTCTGGGGTCATAAACTTTACTaGTTTCCAAATGCCTCTGAGCATGGCGGTCACCTTCCACTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: SRQFPQFLLWGHKLY*FPNASEHGGHLPLS Trigger: GGACAGTGGAAGGTGACCGCCATGCTCAGAGGCATTTGGAAATCAGTAAAGTTTATGACCCCAGAGAAGGAATTGAGGAAATTGGCGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR CAA 90 bp | AACAGCAGAAGTGCCGTGTTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGTGGTGGATGATGAATTaGGACTTCTTACAGAAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: NSRSAVFQSPSCSTAGFMWWMMN*DFLQKD Trigger: GTCCTTCTGTAAGAAGTCCAAATTCATCATCCACCA...CATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR CAA 90 bp | GTCTATAGCATGCAAAAGGCCCAGAATCCCAGCACCACATATATTGAAAATTGGAGTGAGGGTTCCCTTTaGACTGAAGGACTTTCCACA | + |
|
Preference number: 5 (lower is better) Translates to: VYSMQKAQNPSTTYIENWSEGSL*TEGLST Trigger: TGTGGAAAGTCCTTCAGTCAAAAGGGAACCCTCACT...CCAATTTTCAATATATGTGGTGCTGGGATTCTGGGCCTTTTGCATGCTATAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR CAA 90 bp | TCAGGAGCTGACAGCTCACAGCAGAACTCCCTGATATGTAAATACGATTTAAATTGGTGGATGATGAATTaGGACTTCTTACAGAAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: SGADSSQQNSLICKYDLNWWMMN*DFLQKD Trigger: GTCCTTCTGTAAGAAGTCCAAATTCATCATCCACCA...ATTTAAATCGTATTTACATATCAGGGAGTTCTGCTGTGAGCTGTCAGCTCCTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS-3UTR CAA 90 bp | TTTCAGTCACCCTCATGCTCAACTGCTGGCTTCATGACTTCATTTTATAAGTTTTTACCCTCATCTTGGTaGAAGTCTTCAAGGCTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: FQSPSCSTAGFMTSFYKFLPSSW*KSSRLS Trigger: AGAAAGCCTTGAAGACTTCAACCAAGATGAGGGTAA...AAACTTATAAAATGAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS CCA 72 bp | GTCGCCTGTGTGATCAGGGGCACACTGCAGCGGGGATaGCTTCCCACACTCGCCACACTCCTGGACTCTCTC | + |
|
Preference number: 6 (lower is better) Translates to: VACVIRGTLQRG*LPTLATLLDSL Trigger: GAGAGAGTCCAGGAGTGTGGCGAGTGTGGGAAGCCATCCCCGCTGCAGTGTGCCCCTGATCACACAGGCGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS TCA 72 bp | ACAGACTCCAGGGTCTCCCCACAGGAGACACAGCTGTaGGCACCTGAGCTGGGGGAAATGAGGGCTGTTTCG | + |
|
Preference number: 6 (lower is better) Translates to: TDSRVSPQETQL*APELGEMRAVS Trigger: CGAAACAGCCCTCATTTCCCCCAGCTCAGGTGCTCACAGCTGTGTCTCCTGTGGGGAGACCCTGGAGTCTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS GCA 72 bp | CTTCCCACACTCGCCACACTCCTGGACTCTCTCTTCTaGATGGACCTTCCAGTGCCTAATGAAAGCAGAGTT | + |
|
Preference number: 6 (lower is better) Translates to: LPTLATLLDSLF*MDLPVPNESRV Trigger: AACTCTGCTTTCATTAGGCACTGGAAGGTCCATGCAGAAGAGAGAGTCCAGGAGTGTGGCGAGTGTGGGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS CCA 72 bp | CCACACTCGCCACACTCCTGGACTCTCTCTTCTGCATaGACCTTCCAGTGCCTAATGAAAGCAGAGTTTAGA | + |
|
Preference number: 6 (lower is better) Translates to: PHSPHSWTLSSA*TFQCLMKAEFR Trigger: TCTAAACTCTGCTTTCATTAGGCACTGGAAGGTCCATGCAGAAGAGAGAGTCCAGGAGTGTGGCGAGTGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS TCA 72 bp | TTTCCTCAATTCCTTCTCTGGGGTCATAAACTTTACTaGTTTCCAAATGCCTCTGAGCATGGCGGTCACCTT | + |
|
Preference number: 6 (lower is better) Translates to: FPQFLLWGHKLY*FPNASEHGGHL Trigger: AAGGTGACCGCCATGCTCAGAGGCATTTGGAAATCAGTAAAGTTTATGACCCCAGAGAAGGAATTGAGGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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| CDS TCA 72 bp | ACACTGTGTACATTCGAAGGGCTTCAGTTCCATTTGTaGTCTCGGATATGTACTGAAGTCCGACATCTGGAT | + |
|
Preference number: 6 (lower is better) Translates to: TLCTFEGLQFHL*SRICTEVRHLD Trigger: ATCCAGATGTCGGACTTCAGTACATATCCGAGATCACAAATGGAACTGAAGCCCTTCGAATGTACACAGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049861.11 ENSMUST00000165318.4 |
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