Pregenerated sensors for RASL2-9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000083649

Ensembl transcript IDs: ENSMUST00000147835.4

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	GCAGTCTTATCTTTGAAATCCAGAACAACTCTGTTCCAGGGGGCTAAATACGCACACTGCACCGCTGGCTaGCATCACAGGACAGTTGCC	+
Preference number: 2 (lower is better) Translates to: AVLSLKSRTTLFQGAKYAHCTAG*HHRTVA Trigger: GGCAACTGTCCTGTGATGCCAGCCAGCGGTGCAGTG...TGCGTATTTAGCCCCCTGGAACAGAGTTGTTCTGGATTTCAAAGATAAGACTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147835.4
3UTR-3UTR CCA 90 bp	GCAGTCTTATCTTTGAAATCCAGAACAACTCTGTTCCAGGGGGCTAAATACGCACACACACTGCACCGCTaGCTGGCATCACAGGACAGT	+
Preference number: 2 (lower is better) Translates to: AVLSLKSRTTLFQGAKYAHTLHR*LASQDS Trigger: ACTGTCCTGTGATGCCAGCCAGCGGTGCAGTGTGTG...TGCGTATTTAGCCCCCTGGAACAGAGTTGTTCTGGATTTCAAAGATAAGACTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147835.4
CDS-3UTR GCA 90 bp	GCAGTCTTATCTTTGAAATCCAGAACAACTCTGTTCCAGGGGGCTAAATACGCAATGTCGTCTTTCCGGTaGCGCCGTCGCCCACCAGGA	+
Preference number: 4 (lower is better) Translates to: AVLSLKSRTTLFQGAKYAMSSFR*RRRPPG Trigger: TCCTGGTGGGCGACGGCGGCACCGGAAAGACGACAT...TGCGTATTTAGCCCCCTGGAACAGAGTTGTTCTGGATTTCAAAGATAAGACTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147835.4
CDS-3UTR CCA 90 bp	GTCTTATCTTTGAAATCCAGAACAACTCTGTTCCAGGGGGCTAAATACGCAAGTGTCATCTTCCTCATCTaGGAGAGCAGTCGTCTGAGC	+
Preference number: 4 (lower is better) Translates to: VLSLKSRTTLFQGAKYASVIFLI*ESSRLS Trigger: GCTCAGACGACTGCTCTCCCAGATGAGGAAGATGAC...ACTTGCGTATTTAGCCCCCTGGAACAGAGTTGTTCTGGATTTCAAAGATAAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147835.4
CDS-3UTR CCA 90 bp	GCAGTCTTATCTTTGAAATCCAGAACAACTCTGTTCCAGGGGGCTAAATACGCAGGTCCTCTGTTGGTATaGAAGACTAATGTGTGCACC	+
Preference number: 4 (lower is better) Translates to: AVLSLKSRTTLFQGAKYAGPLLV*KTNVCT Trigger: GGTGCACACATTAGTCTTCCATACCAACAGAGGACC...TGCGTATTTAGCCCCCTGGAACAGAGTTGTTCTGGATTTCAAAGATAAGACTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147835.4
CDS CCA 90 bp	CTCTGTTGGTATGGAAGACTAATGTGTGCACCTCCACGCCCAGGGTaGCTACATACTCCTTCTCAAACTCTCCGGTCAAGTGGCGCTTCA	+
Preference number: 5 (lower is better) Translates to: LCWYGRLMCAPPRPG*LHTPSQTLRSSGAS Trigger: TGAAGCGCCACTTGACCGGAGAGTTTGAGAAGGAGTATGTAGCCACCCTGGGCGTGGAGGTGCACACATTAGTCTTCCATACCAACAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147835.4
CDS TCA 72 bp	ACTCCTTCTCAAACTCTCCGGTCAAGTGGCGCTTCATaGATGTCGTCTTTCCGGTGCCGCCGTCGCCCACCA	+
Preference number: 6 (lower is better) Translates to: TPSQTLRSSGAS*MSSFRCRRRPP Trigger: TGGTGGGCGACGGCGGCACCGGAAAGACGACATTCATGAAGCGCCACTTGACCGGAGAGTTTGAGAAGGAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147835.4

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