Pregenerated sensors for RASL11B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049907Ensembl transcript IDs: ENSMUST00000051937.9
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGCCCCTCAGGCCCCTCTGCCACTGCTCTTTCTGGAACCATAACTaGTGTCAGCCTGCCATGGTCCCATCTAAGAAGAACCTCGGGCTT | + |
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Preference number: 1 (lower is better) Translates to: RPLRPLCHCSFWNHN*CQPAMVPSKKNLGL Trigger: AAGCCCGAGGTTCTTCTTAGATGGGACCATGGCAGGCTGACAGCAGTTATGGTTCCAGAAAGAGCAGTGGCAGAGGGGCCTGAGGGGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR GCA 90 bp | GTTAGGCAACCCACAGCTGAGTTTTTCACAGCTACTCAACCCCGGTaGCCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACA | + |
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Preference number: 1 (lower is better) Translates to: VRQPTAEFFTATQPR*PSCVRRPSTFLQTT Trigger: TGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGGGCACCGGGGTTGAGTAGCTGTGAAAAACTCAGCTGTGGGTTGCCTAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR CCA 90 bp | TCTGCCACTGCTCTTTCTGGAACCATAACTGCTGTCAGCCTGCCATaGTCCCATCTAAGAAGAACCTCGGGCTTTCTGCCCAGAAGACCA | + |
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Preference number: 1 (lower is better) Translates to: SATALSGTITAVSLP*SHLRRTSGFLPRRP Trigger: TGGTCTTCTGGGCAGAAAGCCCGAGGTTCTTCTTAGATGGGACCATGGCAGGCTGACAGCAGTTATGGTTCCAGAAAGAGCAGTGGCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR GCA 90 bp | GGAAGCAACCCAACGTCATTGCCATGGGTCATTTACACAAACCACGCCACCATCCCCCTCAGGCCCCTCTaGCACTGCTCTTTCTGGAAC | + |
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Preference number: 2 (lower is better) Translates to: GSNPTSLPWVIYTNHATIPLRPL*HCSFWN Trigger: GTTCCAGAAAGAGCAGTGGCAGAGGGGCCTGAGGGG...GATGGTGGCGTGGTTTGTGTAAATGACCCATGGCAATGACGTTGGGTTGCTTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR CCA 90 bp | CCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTCACGGGTGTGCTGTCAGCCTGCCATaGTCCCATCTAAGAAGAACC | + |
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Preference number: 2 (lower is better) Translates to: PSCVRRPSTFLQTTAHGCAVSLP*SHLRRT Trigger: GGTTCTTCTTAGATGGGACCATGGCAGGCTGACAGC...ACACCCGTGAGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR CCA 90 bp | CCCCGGTGCCCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTTGCCACTGCTCTTTCTaGAACCATAACTGCTGTCAG | + |
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Preference number: 2 (lower is better) Translates to: PRCPSCVRRPSTFLQTTACHCSF*NHNCCQ Trigger: CTGACAGCAGTTATGGTTCCAGAAAGAGCAGTGGCA...AGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGGGCACCGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR CCA 90 bp | ACGACTCAGCCAGGCCCAGGAAGCAACCCAACGTCATTGCCATGGGTCATTTACAGCAAACCCTCCCCTTaGGAGAGAGAGAAAGCCCAT | + |
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Preference number: 2 (lower is better) Translates to: TTQPGPGSNPTSLPWVIYSKPSP*EREKAH Trigger: ATGGGCTTTCTCTCTCTCCCAAGGGGAGGGTTTGCT...GTAAATGACCCATGGCAATGACGTTGGGTTGCTTCCTGGGCCTGGCTGAGTCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR TCA 90 bp | ACGACTCAGCCAGGCCCAGGAAGCAACCCAACGTCATTGCCATGGGTCATTTACACACGTTGGAGTCAATaGGAAAAGCAAACCCTCCCC | + |
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Preference number: 2 (lower is better) Translates to: TTQPGPGSNPTSLPWVIYTRWSQ*EKQTLP Trigger: GGGGAGGGTTTGCTTTTCTCATTGACTCCAACGTGT...GTAAATGACCCATGGCAATGACGTTGGGTTGCTTCCTGGGCCTGGCTGAGTCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR GCA 90 bp | ACGACTCAGCCAGGCCCAGGAAGCAACCCAACGTCATTGCCATGGGTCATTTACCCTCACTTCCTTTGTTaGAGAATTCCAAAAGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: TTQPGPGSNPTSLPWVIYPHFLC*RIPKGP Trigger: GGGGCCTTTTGGAATTCTGCAACAAAGGAAGTGAGG...GTAAATGACCCATGGCAATGACGTTGGGTTGCTTCCTGGGCCTGGCTGAGTCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR TCA 90 bp | TTAAAGTGCATCTGTGTAGGGGATTCGGCAGGTAGCCCTGCATCTGGTCACTCTTCACTTAGAAGACAGTaGGGAACAAAAGCATGCCCC | + |
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Preference number: 2 (lower is better) Translates to: LKCICVGDSAGSPASGHSSLRRQ*GTKACP Trigger: GGGGCATGCTTTTGTTCCTCACTGTCTTCTAAGTGA...AGAGTGACCAGATGCAGGGCTACCTGCCGAATCCCCTACACAGATGCACTTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR CCA 90 bp | TTAAAGTGCATCTGTGTAGGGGATTCGGCAGGTAGCCCTGCATCTGGTCACTCTTTGAACTTTATGGGGTaGGGAGAGTCCCTCCTTGTT | + |
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Preference number: 2 (lower is better) Translates to: LKCICVGDSAGSPASGHSLNFMG*GESLLV Trigger: AACAAGGAGGGACTCTCCCCACCCCATAAAGTTCAA...AGAGTGACCAGATGCAGGGCTACCTGCCGAATCCCCTACACAGATGCACTTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR TCA 90 bp | GAACACGTTGGAGTCAATGAGAAAAGCAAACCCTCCCCTTGGGAGAGAGAGAAATGTTTTTGGTGCACCTaGCCATCACTTAGAAGACAG | + |
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Preference number: 2 (lower is better) Translates to: EHVGVNEKSKPSPWEREKCFWCT*PSLRRQ Trigger: CTGTCTTCTAAGTGATGGTCAGGTGCACCAAAAACA...TTTCTCTCTCTCCCAAGGGGAGGGTTTGCTTTTCTCATTGACTCCAACGTGTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR GCA 72 bp | CGACTCAGCCAGGCCCAGGAAGCAACCCAACGTCATTaGCATGGGTCATTTACACAAACCACGCCACCATCA | + |
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Preference number: 3 (lower is better) Translates to: RLSQAQEATQRH*HGSFTQTTPPS Trigger: TGATGGTGGCGTGGTTTGTGTAAATGACCCATGGCAATGACGTTGGGTTGCTTCCTGGGCCTGGCTGAGTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR TCA 72 bp | GGGGATTCGGCAGGTAGCCCTGCATCTGGTCACTCTTaGAAACAGCATCTCAGTATCTCAGCACCCATAGCC | + |
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Preference number: 3 (lower is better) Translates to: GDSAGSPASGHS*KQHLSISAPIA Trigger: GGCTATGGGTGCTGAGATACTGAGATGCTGTTTTCAAGAGTGACCAGATGCAGGGCTACCTGCCGAATCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR GCA 72 bp | AGGCCCCTCTGCCACTGCTCTTTCTGGAACCATAACTaGTGTCAGCCTGCCATGGTCCCATCTAAGAAGAAC | + |
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Preference number: 3 (lower is better) Translates to: RPLCHCSFWNHN*CQPAMVPSKKN Trigger: GTTCTTCTTAGATGGGACCATGGCAGGCTGACAGCAGTTATGGTTCCAGAAAGAGCAGTGGCAGAGGGGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR GCA 72 bp | CCCACAGCTGAGTTTTTCACAGCTACTCAACCCCGGTaGCCATCTTGTGTCAGGAGACCAAGCACCTTCCTA | + |
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Preference number: 3 (lower is better) Translates to: PTAEFFTATQPR*PSCVRRPSTFL Trigger: TAGGAAGGTGCTTGGTCTCCTGACACAAGATGGGCACCGGGGTTGAGTAGCTGTGAAAAACTCAGCTGTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR CCA 72 bp | GCTCTTTCTGGAACCATAACTGCTGTCAGCCTGCCATaGTCCCATCTAAGAAGAACCTCGGGCTTTCTGCCC | + |
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Preference number: 3 (lower is better) Translates to: ALSGTITAVSLP*SHLRRTSGFLP Trigger: GGGCAGAAAGCCCGAGGTTCTTCTTAGATGGGACCATGGCAGGCTGACAGCAGTTATGGTTCCAGAAAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR CAA 90 bp | GTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTCACGGGTGTCTGTACACGGGGGAGAGTCCCTCCTaGTTCTTAAAGAAACCTAGA | + |
|
Preference number: 3 (lower is better) Translates to: VRRPSTFLQTTAHGCLYTGESPS*FLKKPR Trigger: TCTAGGTTTCTTTAAGAACAAGGAGGGACTCTCCCC...CGTGTACAGACACCCGTGAGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR CAA 90 bp | CCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTCACGGGTGTTCCTCACTTCCTTTGTaGCAGAATTCCAAAAGGCCC | + |
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Preference number: 3 (lower is better) Translates to: PSCVRRPSTFLQTTAHGCSSLPL*QNSKRP Trigger: GGGCCTTTTGGAATTCTGCAACAAAGGAAGTGAGGA...ACACCCGTGAGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR CAA 90 bp | CCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTCACGGGTGTCTGTCCTCACTTCCTTaGTTGCAGAATTCCAAAAGG | + |
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Preference number: 3 (lower is better) Translates to: PSCVRRPSTFLQTTAHGCLSSLP*LQNSKR Trigger: CCTTTTGGAATTCTGCAACAAAGGAAGTGAGGACAG...ACACCCGTGAGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR-3UTR CAA 90 bp | ACGACTCAGCCAGGCCCAGGAAGCAACCCAACGTCATTGCCATGGGTCATTTACTGTAAAGAGAACACGTaGGAGTCAATGAGAAAAGCA | + |
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Preference number: 3 (lower is better) Translates to: TTQPGPGSNPTSLPWVIYCKENT*ESMRKA Trigger: TGCTTTTCTCATTGACTCCAACGTGTTCTCTTTACA...GTAAATGACCCATGGCAATGACGTTGGGTTGCTTCCTGGGCCTGGCTGAGTCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR GCA 72 bp | TACAGTTTGAGCCAAAGCTTAAACGGCTTCTTAAAGTaGATCTGTGTAGGGGATTCGGCAGGTAGCCCTGCA | + |
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Preference number: 3 (lower is better) Translates to: YSLSQSLNGFLK*ICVGDSAGSPA Trigger: TGCAGGGCTACCTGCCGAATCCCCTACACAGATGCACTTTAAGAAGCCGTTTAAGCTTTGGCTCAAACTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR CCA 72 bp | CACGTTGGAGTCAATGAGAAAAGCAAACCCTCCCCTTaGGAGAGAGAGAAAGCCCATGATGTTCTTTGTTCT | + |
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Preference number: 3 (lower is better) Translates to: HVGVNEKSKPSP*EREKAHDVLCS Trigger: AGAACAAAGAACATCATGGGCTTTCTCTCTCTCCCAAGGGGAGGGTTTGCTTTTCTCATTGACTCCAACGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR TCA 72 bp | GAAAGTTATCCTGTAAAGAGAACACGTTGGAGTCAATaGGAAAAGCAAACCCTCCCCTTGGGAGAGAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: ESYPVKRTRWSQ*EKQTLPLGERE Trigger: TTCTCTCTCTCCCAAGGGGAGGGTTTGCTTTTCTCATTGACTCCAACGTGTTCTCTTTACAGGATAACTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR GCA 90 bp | CCCCGGTGCCCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTCCCGGGTGCAGCTGCTaGACGTGCTGGTGGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PRCPSCVRRPSTFLQTTAPGCSC*TCWWSW Trigger: CCAGCTCCACCAGCACGTGCAGCAGCTGCACCCGGG...AGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGGGCACCGGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR GCA 90 bp | CCCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTCACGGGTGAGCCGAGTGCCCGGGTaGAGCTGCTGCACGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PILCQETKHLPTDHSSRVSRVPG*SCCTCW Trigger: CCAGCACGTGCAGCAGCTGCACCCGGGCACTCGGCT...CACCCGTGAGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR GCA 90 bp | CCCCTCAGGCCCCTCTGCCACTGCTCTTTCTGGAACCATAACTGCTGTCAGCCTTGCGTTTCTCGGGGGTaGTGCTGGGCTGCTGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: PLRPLCHCSFWNHNCCQPCVSRG*CWAAAW Trigger: CCAAGCAGCAGCCCAGCAGCACCCCCGAGAAACGCA...AGGCTGACAGCAGTTATGGTTCCAGAAAGAGCAGTGGCAGAGGGGCCTGAGGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR CCA 90 bp | TCTGCCACTGCTCTTTCTGGAACCATAACTGCTGTCAGCCTGCCATGGTCCCATTCTTGCCCACGCCGCTaGCCCCTACCACGGCGATCT | + |
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Preference number: 4 (lower is better) Translates to: SATALSGTITAVSLPWSHSCPRR*PLPRRS Trigger: AGATCGCCGTGGTAGGGGCCAGCGGCGTGGGCAAGA...ATGGGACCATGGCAGGCTGACAGCAGTTATGGTTCCAGAAAGAGCAGTGGCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR CCA 90 bp | TCTGCCACTGCTCTTTCTGGAACCATAACTGCTGTCAGCCTGCCATGGTCCCATTCTCGGGGGTGCTGCTaGGCTGCTGCTTGGGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: SATALSGTITAVSLPWSHSRGCC*AAAWGS Trigger: TGAGCCCCAAGCAGCAGCCCAGCAGCACCCCCGAGA...ATGGGACCATGGCAGGCTGACAGCAGTTATGGTTCCAGAAAGAGCAGTGGCAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR GCA 90 bp | CCCCGGTGCCCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTTGGGGCGGGGTACTCTaGGATGGTACACATGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: PRCPSCVRRPSTFLQTTAWGGVL*DGTHVL Trigger: CAGAACATGTGTACCATCGCAGAGTACCCCGCCCCA...AGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGGGCACCGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR GCA 90 bp | TTTGGTGCACCTGACCATCACTTAGAAGACAGTGAGGAACAAAAGCATGCCCCAAGTCGGCAGCGGTGCTaGCTGGGGCGGGGTACTCTG | + |
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Preference number: 4 (lower is better) Translates to: FGAPDHHLEDSEEQKHAPSRQRC*LGRGTL Trigger: CAGAGTACCCCGCCCCAGGCAGCACCGCTGCCGACT...TGGGGCATGCTTTTGTTCCTCACTGTCTTCTAAGTGATGGTCAGGTGCACCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR GCA 90 bp | CCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTCACGGGTGTTGCAGCTGCTGCACGTaGTGGTGGAGCTGGCTAATG | + |
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Preference number: 4 (lower is better) Translates to: PSCVRRPSTFLQTTAHGCCSCCT*WWSWLM Trigger: CATTAGCCAGCTCCACCAGCACGTGCAGCAGCTGCA...ACACCCGTGAGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR GCA 90 bp | GAACACGTTGGAGTCAATGAGAAAAGCAAACCCTCCCCTTGGGAGAGAGAGAAAGTGCCCGGGTGCAGCTaGTGCACGTGCTGGTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: EHVGVNEKSKPSPWEREKVPGCS*CTCWWS Trigger: GCTCCACCAGCACGTGCAGCAGCTGCACCCGGGCAC...TTTCTCTCTCTCCCAAGGGGAGGGTTTGCTTTTCTCATTGACTCCAACGTGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR GCA 90 bp | CCCCTCAGGCCCCTCTGCCACTGCTCTTTCTGGAACCATAACTGCTGTCAGCCTCTCCTCTTCAGGTCTTaGATGTTGGGCGACTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: PLRPLCHCSFWNHNCCQPLLFRS*MLGDLG Trigger: ACCCAAGTCGCCCAACATGCAAGACCTGAAGAGGAG...AGGCTGACAGCAGTTATGGTTCCAGAAAGAGCAGTGGCAGAGGGGCCTGAGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR CCA 90 bp | CCCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTCACGGGTGAGCTGCTGCACGTGCTaGTGGAGCTGGCTAATGAGT | + |
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Preference number: 4 (lower is better) Translates to: PILCQETKHLPTDHSSRVSCCTC*WSWLMS Trigger: ACTCATTAGCCAGCTCCACCAGCACGTGCAGCAGCT...CACCCGTGAGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR GCA 90 bp | AGAAGAACCTCGGGCTTTCTGCCCAGAAGACCAAACCCCCTCCAGGAGTCGTGCTTGGCAGACAGAGCCTaGTTAAACCTCCTCTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: RRTSGFLPRRPNPLQESCLADRA*LNLLFR Trigger: CCTGAAGAGGAGGTTTAAGCAGGCTCTGTCTGCCAA...GCACGACTCCTGGAGGGGGTTTGGTCTTCTGGGCAGAAAGCCCGAGGTTCTTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| 3UTR CAA 72 bp | ACGACTCAGCCAGGCCCAGGAAGCAACCCAACGTCATaGCCATGGGTCATTTACACAAACCACGCCACCATC | + |
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Preference number: 4 (lower is better) Translates to: TTQPGPGSNPTS*PWVIYTNHATI Trigger: GATGGTGGCGTGGTTTGTGTAAATGACCCATGGCAATGACGTTGGGTTGCTTCCTGGGCCTGGCTGAGTCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR CCA 90 bp | CCTGCCATGGTCCCATCTAAGAAGAACCTCGGGCTTTCTGCCCAGAAGACCAAATGCTGCACGTGCTGGTaGAGCTGGCTAATGAGTTCG | + |
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Preference number: 4 (lower is better) Translates to: PAMVPSKKNLGLSAQKTKCCTCW*SWLMSS Trigger: CGAACTCATTAGCCAGCTCCACCAGCACGTGCAGCA...TTTGGTCTTCTGGGCAGAAAGCCCGAGGTTCTTCTTAGATGGGACCATGGCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR GCA 90 bp | ATAACTGCTGTCAGCCTGCCATGGTCCCATCTAAGAAGAACCTCGGGCTTTCTGCATCTGCCCAGCGAATaGAGCGATTCAACTGCTCGC | + |
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Preference number: 4 (lower is better) Translates to: ITAVSLPWSHLRRTSGFLHLPSE*SDSTAR Trigger: GCGAGCAGTTGAATCGCTGCATTCGCTGGGCAGATG...CAGAAAGCCCGAGGTTCTTCTTAGATGGGACCATGGCAGGCTGACAGCAGTTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR TCA 90 bp | ATAACTGCTGTCAGCCTGCCATGGTCCCATCTAAGAAGAACCTCGGGCTTTCTGACTTGGGTCTGGGGATaGGGGAAGTTCTGCGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: ITAVSLPWSHLRRTSGFLTWVWG*GKFCVS Trigger: AGAAACGCAGAACTTCCCTCATCCCCAGACCCAAGT...CAGAAAGCCCGAGGTTCTTCTTAGATGGGACCATGGCAGGCTGACAGCAGTTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR GCA 90 bp | TCTGCCACTGCTCTTTCTGGAACCATAACTGCTGTCAGCCTGCCATGGTCCCATTGGGGCTCACTTCTTTaGACAGGACATGGAAAGCAT | + |
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Preference number: 4 (lower is better) Translates to: SATALSGTITAVSLPWSHWGSLL*TGHGKH Trigger: ATGCTTTCCATGTCCTGTGCAAAGAAGTGAGCCCCA...ATGGGACCATGGCAGGCTGACAGCAGTTATGGTTCCAGAAAGAGCAGTGGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS CCA 90 bp | CCGGCGGCCCGCAGCCCCCAGGCAGCAGTCGGCAGCGGTGCTGCCTaGGGCGGGGTACTCTGCGATGGTACACATGTTCTGGATGAGGCG | + |
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Preference number: 5 (lower is better) Translates to: PAARSPQAAVGSGAA*GGVLCDGTHVLDEA Trigger: CGCCTCATCCAGAACATGTGTACCATCGCAGAGTACCCCGCCCCAGGCAGCACCGCTGCCGACTGCTGCCTGGGGGCTGCGGGCCGCCGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR CAA 90 bp | ACGACTCAGCCAGGCCCAGGAAGCAACCCAACGTCATTGCCATGGGTCATTTACACCACCAAAGCGGTCTaGCCCACGCCGCTGGCCCCT | + |
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Preference number: 5 (lower is better) Translates to: TTQPGPGSNPTSLPWVIYTTKAV*PTPLAP Trigger: AGGGGCCAGCGGCGTGGGCAAGACCGCTTTGGTGGT...GTAAATGACCCATGGCAATGACGTTGGGTTGCTTCCTGGGCCTGGCTGAGTCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS GCA 90 bp | GGACGACGGCATCTGCCCAGCGAATGCAGCGATTCAACTGCTCGCTaGAACTCAAGCCATTCTCGTGCACCTGGATGCCCGGAGTGTCCT | + |
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Preference number: 5 (lower is better) Translates to: GRRHLPSECSDSTAR*NSSHSRAPGCPECP Trigger: AGGACACTCCGGGCATCCAGGTGCACGAGAATGGCTTGAGTTGCAGCGAGCAGTTGAATCGCTGCATTCGCTGGGCAGATGCCGTCGTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS GCA 90 bp | AACACGAGGACGACGGCATCTGCCCAGCGAATGCAGCGATTCAACTaGTCGCTGCAACTCAAGCCATTCTCGTGCACCTGGATGCCCGGA | + |
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Preference number: 5 (lower is better) Translates to: NTRTTASAQRMQRFN*SLQLKPFSCTWMPG Trigger: TCCGGGCATCCAGGTGCACGAGAATGGCTTGAGTTGCAGCGAGCAGTTGAATCGCTGCATTCGCTGGGCAGATGCCGTCGTCCTCGTGTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS GCA 90 bp | GTAGCTCTTGTGGTCCGTGATGGAGAACACGAGGACGACGGCATCTaGCCAGCGAATGCAGCGATTCAACTGCTCGCTGCAACTCAAGCC | + |
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Preference number: 5 (lower is better) Translates to: VALVVRDGEHEDDGI*PANAAIQLLAATQA Trigger: GGCTTGAGTTGCAGCGAGCAGTTGAATCGCTGCATTCGCTGGGCAGATGCCGTCGTCCTCGTGTTCTCCATCACGGACCACAAGAGCTAC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR CAA 90 bp | CCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTCACGGGTGTCCTCCTCTTCAGGTCTaGCATGTTGGGCGACTTGGG | + |
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Preference number: 5 (lower is better) Translates to: PSCVRRPSTFLQTTAHGCPPLQV*HVGRLG Trigger: CCCAAGTCGCCCAACATGCAAGACCTGAAGAGGAGG...ACACCCGTGAGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR CAA 90 bp | CCCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTCACGGGTGGTGACAGTCCTCACTTaGGCAGACAGAGCCTGCTTA | + |
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Preference number: 5 (lower is better) Translates to: PILCQETKHLPTDHSSRVVTVLT*ADRACL Trigger: TAAGCAGGCTCTGTCTGCCAAAGTGAGGACTGTCAC...CACCCGTGAGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR CAA 90 bp | CCCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTCACGGGTGTTGGGGCTCACTTCTTaGCACAGGACATGGAAAGCA | + |
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Preference number: 5 (lower is better) Translates to: PILCQETKHLPTDHSSRVLGLTS*HRTWKA Trigger: TGCTTTCCATGTCCTGTGCAAAGAAGTGAGCCCCAA...CACCCGTGAGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS-3UTR CAA 90 bp | CCATCTTGTGTCAGGAGACCAAGCACCTTCCTACAGACCACAGCTCACGGGTGTCTATGTGAACTTGTCTaGTGTAGAGATTACCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: PSCVRRPSTFLQTTAHGCLCELV*CRDYLH Trigger: ATGCAGGTAATCTCTACACAAGACAAGTTCACATAG...ACACCCGTGAGCTGTGGTCTGTAGGAAGGTGCTTGGTCTCCTGACACAAGATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS TCA 90 bp | TGCACAGGACATGGAAAGCATTGTAGACGTCGTTGTAATTTTCACTaGCAGATACTTCATAGAAGGAGCAGCCGAGCATGCTGGCCAGTT | + |
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Preference number: 5 (lower is better) Translates to: CTGHGKHCRRRCNFH*QILHRRSSRACWPV Trigger: AACTGGCCAGCATGCTCGGCTGCTCCTTCTATGAAGTATCTGTCAGTGAAAATTACAACGACGTCTACAATGCTTTCCATGTCCTGTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS CCA 72 bp | CGCAGCCCCCAGGCAGCAGTCGGCAGCGGTGCTGCCTaGGGCGGGGTACTCTGCGATGGTACACATGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: RSPQAAVGSGAA*GGVLCDGTHVL Trigger: CAGAACATGTGTACCATCGCAGAGTACCCCGCCCCAGGCAGCACCGCTGCCGACTGCTGCCTGGGGGCTGCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS GCA 72 bp | GTGGTCCGTGATGGAGAACACGAGGACGACGGCATCTaGCCAGCGAATGCAGCGATTCAACTGCTCGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: VVRDGEHEDDGI*PANAAIQLLAA Trigger: TGCAGCGAGCAGTTGAATCGCTGCATTCGCTGGGCAGATGCCGTCGTCCTCGTGTTCTCCATCACGGACCAC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS GCA 72 bp | CATCTGCCCAGCGAATGCAGCGATTCAACTGCTCGCTaGAACTCAAGCCATTCTCGTGCACCTGGATGCCCG | + |
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Preference number: 6 (lower is better) Translates to: HLPSECSDSTAR*NSSHSRAPGCP Trigger: CGGGCATCCAGGTGCACGAGAATGGCTTGAGTTGCAGCGAGCAGTTGAATCGCTGCATTCGCTGGGCAGATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS GCA 72 bp | ACGACGGCATCTGCCCAGCGAATGCAGCGATTCAACTaGTCGCTGCAACTCAAGCCATTCTCGTGCACCTGG | + |
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Preference number: 6 (lower is better) Translates to: TTASAQRMQRFN*SLQLKPFSCTW Trigger: CCAGGTGCACGAGAATGGCTTGAGTTGCAGCGAGCAGTTGAATCGCTGCATTCGCTGGGCAGATGCCGTCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS CAA 72 bp | AATCGTTTAGTGAGGAATCGGACCACCAAAGCGGTCTaGCCCACGCCGCTGGCCCCTACCACGGCGATCTTA | + |
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Preference number: 6 (lower is better) Translates to: NRLVRNRTTKAV*PTPLAPTTAIL Trigger: TAAGATCGCCGTGGTAGGGGCCAGCGGCGTGGGCAAGACCGCTTTGGTGGTCCGATTCCTCACTAAACGATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS CAA 72 bp | GTTCTGCGTTTCTCGGGGGTGCTGCTGGGCTGCTGCTaGGGGCTCACTTCTTTGCACAGGACATGGAAAGCA | + |
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Preference number: 6 (lower is better) Translates to: VLRFSGVLLGCC*GLTSLHRTWKA Trigger: TGCTTTCCATGTCCTGTGCAAAGAAGTGAGCCCCAAGCAGCAGCCCAGCAGCACCCCCGAGAAACGCAGAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS GCA 72 bp | TGGAGAACACGAGGACGACGGCATCTGCCCAGCGAATaGAGCGATTCAACTGCTCGCTGCAACTCAAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: WRTRGRRHLPSE*SDSTARCNSSH Trigger: ATGGCTTGAGTTGCAGCGAGCAGTTGAATCGCTGCATTCGCTGGGCAGATGCCGTCGTCCTCGTGTTCTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS GCA 72 bp | GAAGTTCTGCGTTTCTCGGGGGTGCTGCTGGGCTGCTaGTTGGGGCTCACTTCTTTGCACAGGACATGGAAA | + |
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Preference number: 6 (lower is better) Translates to: EVLRFSGVLLGC*LGLTSLHRTWK Trigger: TTTCCATGTCCTGTGCAAAGAAGTGAGCCCCAAGCAGCAGCCCAGCAGCACCCCCGAGAAACGCAGAACTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS CCA 72 bp | TTCTGCGTTTCTCGGGGGTGCTGCTGGGCTGCTGCTTaGGGCTCACTTCTTTGCACAGGACATGGAAAGCAT | + |
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Preference number: 6 (lower is better) Translates to: FCVSRGCCWAAA*GSLLCTGHGKH Trigger: ATGCTTTCCATGTCCTGTGCAAAGAAGTGAGCCCCAAGCAGCAGCCCAGCAGCACCCCCGAGAAACGCAGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS GCA 72 bp | GGGTGCTGCTGGGCTGCTGCTTGGGGCTCACTTCTTTaGACAGGACATGGAAAGCATTGTAGACGTCGTTGT | + |
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Preference number: 6 (lower is better) Translates to: GCCWAAAWGSLL*TGHGKHCRRRC Trigger: ACAACGACGTCTACAATGCTTTCCATGTCCTGTGCAAAGAAGTGAGCCCCAAGCAGCAGCCCAGCAGCACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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| CDS TCA 72 bp | CATGGAAAGCATTGTAGACGTCGTTGTAATTTTCACTaGCAGATACTTCATAGAAGGAGCAGCCGAGCATGC | + |
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Preference number: 6 (lower is better) Translates to: HGKHCRRRCNFH*QILHRRSSRAC Trigger: GCATGCTCGGCTGCTCCTTCTATGAAGTATCTGTCAGTGAAAATTACAACGACGTCTACAATGCTTTCCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051937.9 |
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