RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RASGRF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032356

Ensembl transcript IDs: ENSMUST00000034909.11, ENSMUST00000034912.6, ENSMUST00000189545.2

Found 387 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGAGCCCAGGCCAGGGAGGTACCCTGCAGCAGCTAAGTGGGGGTTaGGGCACGATGCACCAATCTCATTTCAGGAGACCCTGGGGTCCC +
Preference number: 1 (lower is better)
Translates to: QSPGQGGTLQQLSGG*GTMHQSHFRRPWGP
Trigger: GGGACCCCAGGGTCTCCTGAAATGAGATTGGTGCATCGTGCCCCAACCCCCACTTAGCTGCTGCAGGGTACCTCCCTGGCCTGGGCTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 90 bp GGGAGGTGTCCTGGCTCCTGGAGCAGTGCAGGCAGACTTCTCTTCTaGGAGGCCATTTTCAGGCTGAGACCTGCTAGAGACTCCGAGGCC +
Preference number: 1 (lower is better)
Translates to: GRCPGSWSSAGRLLF*EAIFRLRPARDSEA
Trigger: GGCCTCGGAGTCTCTAGCAGGTCTCAGCCTGAAAATGGCCTCTCAGAAGAGAAGTCTGCCTGCACTGCTCCAGGAGCCAGGACACCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 90 bp GTCACGCAGCGTTGTCAAGTCTTCTGGCTTTCCCATCCATGTCTGTaGAGCTGGAGCAACGGTACCTGGGGAGCACCGTGGAGACCACTC +
Preference number: 1 (lower is better)
Translates to: VTQRCQVFWLSHPCL*SWSNGTWGAPWRPL
Trigger: GAGTGGTCTCCACGGTGCTCCCCAGGTACCGTTGCTCCAGCTCCACAGACATGGATGGGAAAGCCAGAAGACTTGACAACGCTGCGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 90 bp AGAGACAGACGAGGCCAGATTCCTATCCGAGGAGGGGCTGGTGAGTaGGCCAGTCCTCTAGGGGCTCTTTGGAAGGAAGGGAGGACTTCT +
Preference number: 1 (lower is better)
Translates to: RDRRGQIPIRGGAGE*ASPLGALWKEGRTS
Trigger: AGAAGTCCTCCCTTCCTTCCAAAGAGCCCCTAGAGGACTGGCTCACTCACCAGCCCCTCCTCGGATAGGAATCTGGCCTCGTCTGTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 90 bp CTGGGGAGCACCGTGGAGACCACTCTGAGCTCAGCACCTTACTGTTaGCTGCTCTCAGAGAACACAAAGGATAGGCTGACAAGCCATGGC +
Preference number: 1 (lower is better)
Translates to: LGSTVETTLSSAPYC*LLSENTKDRLTSHG
Trigger: GCCATGGCTTGTCAGCCTATCCTTTGTGTTCTCTGAGAGCAGCCAACAGTAAGGTGCTGAGCTCAGAGTGGTCTCCACGGTGCTCCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 90 bp TCAGAGGGCAGAGTCTCATATTTGCTGCTAGGACAGGGTGGCCATTaGGGAGTCTGTCTCCTCACCTGTGAAACCGGAGCACACCCAGTC +
Preference number: 1 (lower is better)
Translates to: SEGRVSYLLLGQGGH*GVCLLTCETGAHPV
Trigger: GACTGGGTGTGCTCCGGTTTCACAGGTGAGGAGACAGACTCCTCAATGGCCACCCTGTCCTAGCAGCAAATATGAGACTCTGCCCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 90 bp ACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTaGGGGGCAGCTGGCGTTACGCTGCGGTGCCAGTGGGTGGGGAGA +
Preference number: 1 (lower is better)
Translates to: TIIYNNRKAGVHRSS*GAAGVTLRCQWVGR
Trigger: TCTCCCCACCCACTGGCACCGCAGCGTAACGCCAGCTGCCCCCCAGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
3UTR CCA 90 bp GATGTTCTCTCCTCTGCACCTGTGGGATCTGACCCTGGCTCAGTGTaGAGAGCCAAGGTGTACCCTGGGCAAATCAACCACAGTGATGTT +
Preference number: 1 (lower is better)
Translates to: DVLSSAPVGSDPGSV*RAKVYPGQINHSDV
Trigger: AACATCACTGTGGTTGATTTGCCCAGGGTACACCTTGGCTCTCCACACTGAGCCAGGGTCAGATCCCACAGGTGCAGAGGAGAGAACATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 90 bp ACCTTCCATCCACCTTGGCCTCTCCTGGTTGGAGGGAGCACAAGCTaGACTGAGGTTGCTTTGGCAAGATCTCTTACTGAGAAGCCAGCA +
Preference number: 1 (lower is better)
Translates to: TFHPPWPLLVGGSTS*TEVALARSLTEKPA
Trigger: TGCTGGCTTCTCAGTAAGAGATCTTGCCAAAGCAACCTCAGTTCAGCTTGTGCTCCCTCCAACCAGGAGAGGCCAAGGTGGATGGAAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 90 bp TCGCCAGCTTCTTGCAGGGACACATCCTTCTTAAGTTGGAGCTGCTaGTTTCCTGCCCTTCACCCCTTGCTTTGCTTAGATCCCAGGAAG +
Preference number: 1 (lower is better)
Translates to: SPASCRDTSFLSWSC*FPALHPLLCLDPRK
Trigger: CTTCCTGGGATCTAAGCAAAGCAAGGGGTGAAGGGCAGGAAAGCAGCAGCTCCAACTTAAGAAGGATGTGTCCCTGCAAGAAGCTGGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 90 bp TACATAAGACAGTTAAAGCAGGCGTCTCTGACTGATGTGGGGGTATaGCCCCCAGGGCTTCTCCGAATGAGGGAGGAGAACCATAGATGG +
Preference number: 1 (lower is better)
Translates to: YIRQLKQASLTDVGV*PPGLLRMREENHRW
Trigger: CCATCTATGGTTCTCCTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAGAGACGCCTGCTTTAACTGTCTTATGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
3UTR TCA 90 bp GAAGCCCAATTAATACATAAGACAGTTAAAGCAGGCGTCTCTGACTaGTGTGGGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGGA +
Preference number: 1 (lower is better)
Translates to: EAQLIHKTVKAGVSD*CGGMAPRASPNEGG
Trigger: TCCTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAGAGACGCCTGCTTTAACTGTCTTATGTATTAATTGGGCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
3UTR TCA 90 bp TCATTCCCTAGGATCCAGTTATCAGAGGGCCACCTGCCAACCATCTaGCCATGGCCTTTCATTGGGCCCATCCCTTTCTGGATGTATGCT +
Preference number: 1 (lower is better)
Translates to: SFPRIQLSEGHLPTI*PWPFIGPIPFWMYA
Trigger: AGCATACATCCAGAAAGGGATGGGCCCAATGAAAGGCCATGGTCAGATGGTTGGCAGGTGGCCCTCTGATAACTGGATCCTAGGGAATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 90 bp CATCTGACCATGGCCTTTCATTGGGCCCATCCCTTTCTGGATGTATaGTTGCTTTTGTCCACTGAGGGTCACTGTCTCTGGGCATCCTCT +
Preference number: 1 (lower is better)
Translates to: HLTMAFHWAHPFLDV*LLLSTEGHCLWASS
Trigger: AGAGGATGCCCAGAGACAGTGACCCTCAGTGGACAAAAGCAAGCATACATCCAGAAAGGGATGGGCCCAATGAAAGGCCATGGTCAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 90 bp AGTACATCACCTCATTCCCTAGGATCCAGTTATCAGAGGGCCACCTaGCAACCATCTGACCATGGCCTTTCATTGGGCCCATCCCTTTCT +
Preference number: 1 (lower is better)
Translates to: STSPHSLGSSYQRAT*QPSDHGLSLGPSLS
Trigger: AGAAAGGGATGGGCCCAATGAAAGGCCATGGTCAGATGGTTGGCAGGTGGCCCTCTGATAACTGGATCCTAGGGAATGAGGTGATGTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 90 bp GGGCATTGCCATCAGAGCAGCATCCTTTTCCTATGTGCATTTTCCTaGCTTAGGGAGGAGTTGACTAGGTTTCAGCTCTGGAGGGTGGTG +
Preference number: 1 (lower is better)
Translates to: GHCHQSSILFLCAFS*LREELTRFQLWRVV
Trigger: CACCACCCTCCAGAGCTGAAACCTAGTCAACTCCTCCCTAAGCCAGGAAAATGCACATAGGAAAAGGATGCTGCTCTGATGGCAATGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 90 bp GTTATCAGAGGGCCACCTGCCAACCATCTGACCATGGCCTTTCATTaGGCCCATCCCTTTCTGGATGTATGCTTGCTTTTGTCCACTGAG +
Preference number: 1 (lower is better)
Translates to: VIRGPPANHLTMAFH*AHPFLDVCLLLSTE
Trigger: CTCAGTGGACAAAAGCAAGCATACATCCAGAAAGGGATGGGCCCAATGAAAGGCCATGGTCAGATGGTTGGCAGGTGGCCCTCTGATAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 90 bp CTCAGTGTGGAGAGCCAAGGTGTACCCTGGGCAAATCAACCACAGTaGTGTTTCAAGCTTAGGTTTACAGGTGTCCCTGACCCTCACTCT +
Preference number: 1 (lower is better)
Translates to: LSVESQGVPWANQPQ*CFKLRFTGVPDPHS
Trigger: AGAGTGAGGGTCAGGGACACCTGTAAACCTAAGCTTGAAACATCACTGTGGTTGATTTGCCCAGGGTACACCTTGGCTCTCCACACTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 90 bp TTCTTAAGTTGGAGCTGCTGCTTTCCTGCCCTTCACCCCTTGCTTTaGTTAGATCCCAGGAAGCTGTGTGTGAAGGGCATTGCCATCAGA +
Preference number: 1 (lower is better)
Translates to: FLSWSCCFPALHPLL*LDPRKLCVKGIAIR
Trigger: TCTGATGGCAATGCCCTTCACACACAGCTTCCTGGGATCTAAGCAAAGCAAGGGGTGAAGGGCAGGAAAGCAGCAGCTCCAACTTAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 90 bp ATCTGCTATGTGTTCAAGTCCTCAACCTTGCCACTGCTACCAGGGTaGGGGATTTCCAGCTCAGACTTGCTCTCTGTTCCCATAGTTGAG +
Preference number: 1 (lower is better)
Translates to: ICYVFKSSTLPLLPG*GISSSDLLSVPIVE
Trigger: CTCAACTATGGGAACAGAGAGCAAGTCTGAGCTGGAAATCCCCCACCCTGGTAGCAGTGGCAAGGTTGAGGACTTGAACACATAGCAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 90 bp TCTCTGTCTCTCTCTGTCTCTCTGTCTCTCTCTCTCTCTCTCAGCTaGGAGGTAGGGTGGATAAAGGAACACCCCACAGTTTCTTCAGAG +
Preference number: 1 (lower is better)
Translates to: SLSLSVSLSLSLSLS*EVGWIKEHPTVSSE
Trigger: CTCTGAAGAAACTGTGGGGTGTTCCTTTATCCACCCTACCTCTCAGCTGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGAGACAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 90 bp AAAGGAACACCCCACAGTTTCTTCAGAGCCAGTGATCACACATGCTaGCATTCTATCTTAGCTTCGCCAGCTTCTTGCAGGGACACATCC +
Preference number: 1 (lower is better)
Translates to: KGTPHSFFRASDHTC*HSILASPASCRDTS
Trigger: GGATGTGTCCCTGCAAGAAGCTGGCGAAGCTAAGATAGAATGCCAGCATGTGTGATCACTGGCTCTGAAGAAACTGTGGGGTGTTCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 90 bp AGAAGCATTTTCTATGTATCTGCTATGTGTTCAAGTCCTCAACCTTaGCACTGCTACCAGGGTGGGGGATTTCCAGCTCAGACTTGCTCT +
Preference number: 1 (lower is better)
Translates to: RSIFYVSAMCSSPQP*HCYQGGGFPAQTCS
Trigger: AGAGCAAGTCTGAGCTGGAAATCCCCCACCCTGGTAGCAGTGGCAAGGTTGAGGACTTGAACACATAGCAGATACATAGAAAATGCTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 90 bp CAACACTTCAAGCACGTCCAGACCAAGAAGCATTTTCTATGTATCTaGTATGTGTTCAAGTCCTCAACCTTGCCACTGCTACCAGGGTGG +
Preference number: 1 (lower is better)
Translates to: QHFKHVQTKKHFLCI*YVFKSSTLPLLPGW
Trigger: CCACCCTGGTAGCAGTGGCAAGGTTGAGGACTTGAACACATAGCAGATACATAGAAAATGCTTCTTGGTCTGGACGTGCTTGAAGTGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR TCA 90 bp GCGTCTCTGACTGATGTGGGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGCAGGGCTTCTCCGAATaGGGGAGGAGAACCATAGAT +
Preference number: 2 (lower is better)
Translates to: ASLTDVGVWPPGLLRMREQGFSE*GRRTID
Trigger: ATCTATGGTTCTCCTCCCTCATTCGGAGAAGCCCTG...CTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAGAGACGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
3UTR-3UTR TCA 90 bp GCGTCTCTGACTGATGTGGGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGTCTTATCCAGTGGAATaGCAGGTCCTGCCAGTCCCT +
Preference number: 2 (lower is better)
Translates to: ASLTDVGVWPPGLLRMRESYPVE*QVLPVP
Trigger: AGGGACTGGCAGGACCTGTCATTCCACTGGATAAGA...CTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAGAGACGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR GCA 90 bp GGGCTAGAAACCCCACCGGTGCTGAAGCTGGGAGGTGTCCTGGCTCCTGGAGCAGTGTGTGAAGGGCATTaGCATCAGAGCAGCATCCTT +
Preference number: 2 (lower is better)
Translates to: GLETPPVLKLGGVLAPGAVCEGH*HQSSIL
Trigger: AAGGATGCTGCTCTGATGGCAATGCCCTTCACACAC...TGCTCCAGGAGCCAGGACACCTCCCAGCTTCAGCACCGGTGGGGTTTCTAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR GCA 90 bp GCGTCTCTGACTGATGTGGGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGTTAAGTTGGAGCTGCTaGTTTCCTGCCCTTCACCCC +
Preference number: 2 (lower is better)
Translates to: ASLTDVGVWPPGLLRMRELSWSC*FPALHP
Trigger: GGGGTGAAGGGCAGGAAAGCAGCAGCTCCAACTTAA...CTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAGAGACGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR TCA 90 bp CTTGCCCTAGGTAGATACTGTGTGGAGCAAAGCTCTGTGCTTGCTTGGAGTGTGCCAGAGGGCCCTGGCTaGGCCTGTGGGGTGCAATCT +
Preference number: 2 (lower is better)
Translates to: LALGRYCVEQSSVLAWSVPEGPG*ACGVQS
Trigger: AGATTGCACCCCACAGGCTCAGCCAGGGCCCTCTGG...CACACTCCAAGCAAGCACAGAGCTTTGCTCCACACAGTATCTACCTAGGGCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CCA 90 bp GCGTCTCTGACTGATGTGGGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGTCAGCACCTTACTGTTaGCTGCTCTCAGAGAACACA +
Preference number: 2 (lower is better)
Translates to: ASLTDVGVWPPGLLRMRESAPYC*LLSENT
Trigger: TGTGTTCTCTGAGAGCAGCCAACAGTAAGGTGCTGA...CTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAGAGACGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CAA 90 bp AGGGATGGTGGAAGAGACGCTTCGACTCCACTCTGTCACGCAGCGTaGTCAAGTCTTCTGGCTTTCCCATCCATGTCTGTGGAGCTGGAG +
Preference number: 2 (lower is better)
Translates to: RDGGRDASTPLCHAA*SSLLAFPSMSVELE
Trigger: CTCCAGCTCCACAGACATGGATGGGAAAGCCAGAAGACTTGACAACGCTGCGTGACAGAGTGGAGTCGAAGCGTCTCTTCCACCATCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR GCA 90 bp GCTTTCCCATCCATGTCTGTGGAGCTGGAGCAACGGTACCTGGGGAGCACCGTGTTCTTAAGTTGGAGCTaGTGCTTTCCTGCCCTTCAC +
Preference number: 2 (lower is better)
Translates to: AFPSMSVELEQRYLGSTVFLSWS*CFPALH
Trigger: GTGAAGGGCAGGAAAGCAGCAGCTCCAACTTAAGAA...CACGGTGCTCCCCAGGTACCGTTGCTCCAGCTCCACAGACATGGATGGGAAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CCA 90 bp GAGACGCTTCGACTCCACTCTGTCACGCAGCGTTGTCAAGTCTTCTGGCTTTCCCAGGGTCTACCCAGCTaGCACTGTCCTCTGTCTTGT +
Preference number: 2 (lower is better)
Translates to: ETLRLHSVTQRCQVFWLSQGLPS*HCPLSC
Trigger: ACAAGACAGAGGACAGTGCCAGCTGGGTAGACCCTG...GGAAAGCCAGAAGACTTGACAACGCTGCGTGACAGAGTGGAGTCGAAGCGTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CAA 90 bp CAAGGGAATCACAAGGCACCTTCCATCCACCTTGGCCTCTCCTGGTaGGAGGGAGCACAAGCTGAACTGAGGTTGCTTTGGCAAGATCTC +
Preference number: 2 (lower is better)
Translates to: QGNHKAPSIHLGLSW*EGAQAELRLLWQDL
Trigger: GAGATCTTGCCAAAGCAACCTCAGTTCAGCTTGTGCTCCCTCCAACCAGGAGAGGCCAAGGTGGATGGAAGGTGCCTTGTGATTCCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR TCA 90 bp GAACACCCCACAGTTTCTTCAGAGCCAGTGATCACACATGCTGGCATTCTATCTAGCTCTGGAGGGTGGTaGGGCTGGCAGAGCTGCAGA +
Preference number: 2 (lower is better)
Translates to: EHPTVSSEPVITHAGILSSSGGW*GWQSCR
Trigger: TCTGCAGCTCTGCCAGCCTCACCACCCTCCAGAGCT...AGATAGAATGCCAGCATGTGTGATCACTGGCTCTGAAGAAACTGTGGGGTGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR TCA 90 bp CTTCGACTCCACTCTGTCACGCAGCGTTGTCAAGTCTTCTGGCTTTCCCATCCAGGCAGACTTCTCTTCTaGGAGGCCATTTTCAGGCTG +
Preference number: 2 (lower is better)
Translates to: LRLHSVTQRCQVFWLSHPGRLLF*EAIFRL
Trigger: CAGCCTGAAAATGGCCTCTCAGAAGAGAAGTCTGCC...TGGATGGGAAAGCCAGAAGACTTGACAACGCTGCGTGACAGAGTGGAGTCGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR GCA 90 bp CTTCGACTCCACTCTGTCACGCAGCGTTGTCAAGTCTTCTGGCTTTCCCATCCAGGGGTTGGGGCACGATaGACCAATCTCATTTCAGGA +
Preference number: 2 (lower is better)
Translates to: LRLHSVTQRCQVFWLSHPGVGAR*TNLISG
Trigger: TCCTGAAATGAGATTGGTGCATCGTGCCCCAACCCC...TGGATGGGAAAGCCAGAAGACTTGACAACGCTGCGTGACAGAGTGGAGTCGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CCA 90 bp TTTGTGTTCTCAAGGACCTGGGGATCCATCCATCCAGTGTCATTTCCCCTTTGTGCTGCAGACAGTGGGTaGGCAGAAGGGCAGACAGTC +
Preference number: 2 (lower is better)
Translates to: FVFSRTWGSIHPVSFPLCAADSG*AEGQTV
Trigger: GACTGTCTGCCCTTCTGCCCACCCACTGTCTGCAGC...ACAAAGGGGAAATGACACTGGATGGATGGATCCCCAGGTCCTTGAGAACACAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CCA 90 bp TCTAGCATTTTCCCCACTTGTCTTCCTGGGACAGCATCAATTCTTACTGTCTGCAGCTGGGAGGTGTCCTaGCTCCTGGAGCAGTGCAGG +
Preference number: 2 (lower is better)
Translates to: SSIFPTCLPGTASILTVCSWEVS*LLEQCR
Trigger: CCTGCACTGCTCCAGGAGCCAGGACACCTCCCAGCT...GCAGACAGTAAGAATTGATGCTGTCCCAGGAAGACAAGTGGGGAAAATGCTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CAA 90 bp CTTCTTAAGTTGGAGCTGCTGCTTTCCTGCCCTTCACCCCTTGCTTaGCTTAGATCCCAGGAAGCTGTGTGTGAAGGGCATTGCCATCAG +
Preference number: 2 (lower is better)
Translates to: LLKLELLLSCPSPLA*LRSQEAVCEGHCHQ
Trigger: CTGATGGCAATGCCCTTCACACACAGCTTCCTGGGATCTAAGCAAAGCAAGGGGTGAAGGGCAGGAAAGCAGCAGCTCCAACTTAAGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR TCA 90 bp GCAGATATGAATGAAGAAGGGGCTAGAAACCCCACCGGTGCTGAAGCTGGGAGGTTTCTTCAGAGCCAGTaGTCACACATGCTGGCATTC +
Preference number: 2 (lower is better)
Translates to: ADMNEEGARNPTGAEAGRFLQSQ*SHMLAF
Trigger: GAATGCCAGCATGTGTGATCACTGGCTCTGAAGAAA...CCTCCCAGCTTCAGCACCGGTGGGGTTTCTAGCCCCTTCTTCATTCATATCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CCA 90 bp TCTAGCATTTTCCCCACTTGTCTTCCTGGGACAGCATCAATTCTTACTGTCTGCAAGAAGCCATTTAGCTaGGGCGGGGGAGGGGCAGGT +
Preference number: 2 (lower is better)
Translates to: SSIFPTCLPGTASILTVCKKPFS*GGGGAG
Trigger: ACCTGCCCCTCCCCCGCCCCAGCTAAATGGCTTCTT...GCAGACAGTAAGAATTGATGCTGTCCCAGGAAGACAAGTGGGGAAAATGCTAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CCA 90 bp GTGGAGCAAAGCTCTGTGCTTGCTTGGAGTGTGATGTTCTCTCCTCTGCACCTGGCAACTCCCTTTCTATaGGCCTCAGTTTCTCAGCCT +
Preference number: 2 (lower is better)
Translates to: VEQSSVLAWSVMFSPLHLATPFL*ASVSQP
Trigger: AGGCTGAGAAACTGAGGCCCATAGAAAGGGAGTTGC...CAGGTGCAGAGGAGAGAACATCACACTCCAAGCAAGCACAGAGCTTTGCTCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CCA 90 bp CTTCGACTCCACTCTGTCACGCAGCGTTGTCAAGTCTTCTGGCTTTCCCATCCACTCCATCTTATCCAGTaGAATGACAGGTCCTGCCAG +
Preference number: 2 (lower is better)
Translates to: LRLHSVTQRCQVFWLSHPLHLIQ*NDRSCQ
Trigger: CTGGCAGGACCTGTCATTCCACTGGATAAGATGGAG...TGGATGGGAAAGCCAGAAGACTTGACAACGCTGCGTGACAGAGTGGAGTCGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR TCA 90 bp TCTAGCATTTTCCCCACTTGTCTTCCTGGGACAGCATCAATTCTTACTGTCTGCGGAGGGAGCACAAGCTaGACTGAGGTTGCTTTGGCA +
Preference number: 2 (lower is better)
Translates to: SSIFPTCLPGTASILTVCGGSTS*TEVALA
Trigger: TGCCAAAGCAACCTCAGTTCAGCTTGTGCTCCCTCC...GCAGACAGTAAGAATTGATGCTGTCCCAGGAAGACAAGTGGGGAAAATGCTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR TCA 90 bp ATAAAGGAACACCCCACAGTTTCTTCAGAGCCAGTGATCACACATGCTGGCATTCAGGGCTTCTCCGAATaGGGGAGGAGAACCATAGAT +
Preference number: 2 (lower is better)
Translates to: IKEHPTVSSEPVITHAGIQGFSE*GRRTID
Trigger: ATCTATGGTTCTCCTCCCTCATTCGGAGAAGCCCTG...AATGCCAGCATGTGTGATCACTGGCTCTGAAGAAACTGTGGGGTGTTCCTTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR TCA 90 bp AGGATTATGACTGCAGATATGAATGAAGAAGGGGCTAGAAACCCCACCGGTGCTGAGAATGGGAGACCTTaGACCTGCATCAACATGGCT +
Preference number: 2 (lower is better)
Translates to: RIMTADMNEEGARNPTGAENGRP*TCINMA
Trigger: AGCCATGTTGATGCAGGTTCAAGGTCTCCCATTCTC...AGCACCGGTGGGGTTTCTAGCCCCTTCTTCATTCATATCTGCAGTCATAATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR GCA 90 bp GAGTGCAGACATCTATATTTTGAGTGCAGACATTTGTATTTCGGTTTTACGGGAGGCGTTACGCTGCGGTaGCAGTGGGTGGGGAGAACA +
Preference number: 2 (lower is better)
Translates to: ECRHLYFECRHLYFGFTGGVTLR*QWVGRT
Trigger: TGTTCTCCCCACCCACTGGCACCGCAGCGTAACGCC...TCCCGTAAAACCGAAATACAAATGTCTGCACTCAAAATATAGATGTCTGCACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
3UTR-3UTR CCA 90 bp TCTAGCATTTTCCCCACTTGTCTTCCTGGGACAGCATCAATTCTTACTGTCTGCCCTCTAGGGGCTCTTTaGAAGGAAGGGAGGACTTCT +
Preference number: 2 (lower is better)
Translates to: SSIFPTCLPGTASILTVCPLGAL*KEGRTS
Trigger: AGAAGTCCTCCCTTCCTTCCAAAGAGCCCCTAGAGG...GCAGACAGTAAGAATTGATGCTGTCCCAGGAAGACAAGTGGGGAAAATGCTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CAA 90 bp AAGAAGCATTTTCTATGTATCTGCTATGTGTTCAAGTCCTCAACCTaGCCACTGCTACCAGGGTGGGGGATTTCCAGCTCAGACTTGCTC +
Preference number: 2 (lower is better)
Translates to: KKHFLCICYVFKSST*PLLPGWGISSSDLL
Trigger: GAGCAAGTCTGAGCTGGAAATCCCCCACCCTGGTAGCAGTGGCAAGGTTGAGGACTTGAACACATAGCAGATACATAGAAAATGCTTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR TCA 90 bp CTTGCCCTAGGTAGATACTGTGTGGAGCAAAGCTCTGTGCTTGCTTGGAGTGTGGCAAATCAACCACAGTaGTGTTTCAAGCTTAGGTTT +
Preference number: 2 (lower is better)
Translates to: LALGRYCVEQSSVLAWSVANQPQ*CFKLRF
Trigger: AAACCTAAGCTTGAAACATCACTGTGGTTGATTTGC...CACACTCCAAGCAAGCACAGAGCTTTGCTCCACACAGTATCTACCTAGGGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR GCA 90 bp GTCAACCACAAAGGTTATAAATATAAGAATAATAGAGTACTGGGACTGCTTGGGGGAGCTGCTGTTCCTTaGCATCAGGGAGCCTCTGCC +
Preference number: 2 (lower is better)
Translates to: VNHKGYKYKNNRVLGLLGGAAVP*HQGASA
Trigger: GGCAGAGGCTCCCTGATGGCAAGGAACAGCAGCTCC...CCCAAGCAGTCCCAGTACTCTATTATTCTTATATTTATAACCTTTGTGGTTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CAA 90 bp CCACATCTGTCACCTGGGCACTTAATTATGAAATTTCTGTCCCAGTaGCCTAGCACTGTCCTGGTATTTGGATTTAGTGGGGGAAATGTC +
Preference number: 2 (lower is better)
Translates to: PHLSPGHLIMKFLSQ*PSTVLVFGFSGGNV
Trigger: GACATTTCCCCCACTAAATCCAAATACCAGGACAGTGCTAGGCAACTGGGACAGAAATTTCATAATTAAGTGCCCAGGTGACAGATGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR TCA 90 bp ACTTCAAGCACGTCCAGACCAAGAAGCATTTTCTATGTATCTGCTATGTGTTCACTCTGCCTGGTCACCTaGCTAGTCATTCTCAAGAGT +
Preference number: 2 (lower is better)
Translates to: TSSTSRPRSIFYVSAMCSLCLVT*LVILKS
Trigger: ACTCTTGAGAATGACTAGTCAGGTGACCAGGCAGAG...TGAACACATAGCAGATACATAGAAAATGCTTCTTGGTCTGGACGTGCTTGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR GCA 90 bp CCACTGGTATTGCTGTCTGCTTCAATCCTTTTCCTCTTTCAAGGGAATCACAAGGGTCTTTATAGGTTATaGTGGGCCTCCCTGTTTGTA +
Preference number: 2 (lower is better)
Translates to: PLVLLSASILFLFQGNHKGLYRL*WASLFV
Trigger: TACAAACAGGGAGGCCCAGCATAACCTATAAAGACC...CTTGTGATTCCCTTGAAAGAGGAAAAGGATTGAAGCAGACAGCAATACCAGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CCA 90 bp CCACTGGTATTGCTGTCTGCTTCAATCCTTTTCCTCTTTCAAGGGAATCACAAGGAACTGAGGTTGCTTTaGCAAGATCTCTTACTGAGA +
Preference number: 2 (lower is better)
Translates to: PLVLLSASILFLFQGNHKELRLL*QDLLLR
Trigger: TCTCAGTAAGAGATCTTGCCAAAGCAACCTCAGTTC...CTTGTGATTCCCTTGAAAGAGGAAAAGGATTGAAGCAGACAGCAATACCAGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR TCA 90 bp CCTGTTTGTATTTATGTCCTCCAGAATCCCAGCATCTGTGATCATCAGCTTCTTCTCAGTTTCTCAGCCTaGAGAATGACAAGAATGGAT +
Preference number: 2 (lower is better)
Translates to: PVCIYVLQNPSICDHQLLLSFSA*RMTRMD
Trigger: ATCCATTCTTGTCATTCTTCAGGCTGAGAAACTGAG...AAGAAGCTGATGATCACAGATGCTGGGATTCTGGAGGACATAAATACAAACAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp CTGGGGCACCAGAGGGCCCTGGCTGAGCCTGTGGGGTaGAATCTACTGGTAGATACAGGTGTGCTGTGGCTG +
Preference number: 3 (lower is better)
Translates to: LGHQRALAEPVG*NLLVDTGVLWL
Trigger: CAGCCACAGCACACCTGTATCTACCAGTAGATTGCACCCCACAGGCTCAGCCAGGGCCCTCTGGTGCCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp CGAGGCCAGATTCCTATCCGAGGAGGGGCTGGTGAGTaGGCCAGTCCTCTAGGGGCTCTTTGGAAGGAAGGG +
Preference number: 3 (lower is better)
Translates to: RGQIPIRGGAGE*ASPLGALWKEG
Trigger: CCCTTCCTTCCAAAGAGCCCCTAGAGGACTGGCTCACTCACCAGCCCCTCCTCGGATAGGAATCTGGCCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp GGCCAGGGAGGTACCCTGCAGCAGCTAAGTGGGGGTTaGGGCACGATGCACCAATCTCATTTCAGGAGACCC +
Preference number: 3 (lower is better)
Translates to: GQGGTLQQLSGG*GTMHQSHFRRP
Trigger: GGGTCTCCTGAAATGAGATTGGTGCATCGTGCCCCAACCCCCACTTAGCTGCTGCAGGGTACCTCCCTGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CAA 90 bp GGGCTAGAAACCCCACCGGTGCTGAAGCTGGGAGGTGTCCTGGCTCCTGGAGCATGGCTTAGGGAGGAGTaGACTAGGTTTCAGCTCTGG +
Preference number: 3 (lower is better)
Translates to: GLETPPVLKLGGVLAPGAWLREE*TRFQLW
Trigger: CCAGAGCTGAAACCTAGTCAACTCCTCCCTAAGCCA...TGCTCCAGGAGCCAGGACACCTCCCAGCTTCAGCACCGGTGGGGTTTCTAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp CGTCTTCCTTACTACCTAGGAGCTCAGATCCTACTGTaGTGTAGGGAGCTGGGGCACCAGAGGGCCCTGGCT +
Preference number: 3 (lower is better)
Translates to: RLPYYLGAQILL*CRELGHQRALA
Trigger: AGCCAGGGCCCTCTGGTGCCCCAGCTCCCTACATCACAGTAGGATCTGAGCTCCTAGGTAGTAAGGAAGACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp TTCAGGAGACCCTGGGGTCCCCGGGTAGAGCCAGTGTaGGACAAAGCCCTGGATACTGCCCTTGCTCTAAAC +
Preference number: 3 (lower is better)
Translates to: FRRPWGPRVEPV*DKALDTALALN
Trigger: GTTTAGAGCAAGGGCAGTATCCAGGGCTTTGTCTCACACTGGCTCTACCCGGGGACCCCAGGGTCTCCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp CAGTTAAAGCAGGCGTCTCTGACTGATGTGGGGGTATaGCCCCCAGGGCTTCTCCGAATGAGGGAGGAGAAC +
Preference number: 3 (lower is better)
Translates to: QLKQASLTDVGV*PPGLLRMREEN
Trigger: GTTCTCCTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAGAGACGCCTGCTTTAACTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
3UTR CCA 72 bp GTGGGGTGCAATCTACTGGTAGATACAGGTGTGCTGTaGCTGCAGACAGTGGGTGGGCAGAAGGGCAGACAG +
Preference number: 3 (lower is better)
Translates to: VGCNLLVDTGVL*LQTVGGQKGRQ
Trigger: CTGTCTGCCCTTCTGCCCACCCACTGTCTGCAGCCACAGCACACCTGTATCTACCAGTAGATTGCACCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp CAAGTCTTCTGGCTTTCCCATCCATGTCTGTGGAGCTaGAGCAACGGTACCTGGGGAGCACCGTGGAGACCA +
Preference number: 3 (lower is better)
Translates to: QVFWLSHPCLWS*SNGTWGAPWRP
Trigger: TGGTCTCCACGGTGCTCCCCAGGTACCGTTGCTCCAGCTCCACAGACATGGATGGGAAAGCCAGAAGACTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp CGTTGTCAAGTCTTCTGGCTTTCCCATCCATGTCTGTaGAGCTGGAGCAACGGTACCTGGGGAGCACCGTGG +
Preference number: 3 (lower is better)
Translates to: RCQVFWLSHPCL*SWSNGTWGAPW
Trigger: CCACGGTGCTCCCCAGGTACCGTTGCTCCAGCTCCACAGACATGGATGGGAAAGCCAGAAGACTTGACAACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CAA 90 bp GTGGAGCAAAGCTCTGTGCTTGCTTGGAGTGTGATGTTCTCTCCTCTGCACCTGGCAGCTAAGTGGGGGTaGGGGCACGATGCACCAATC +
Preference number: 3 (lower is better)
Translates to: VEQSSVLAWSVMFSPLHLAAKWG*GHDAPI
Trigger: GATTGGTGCATCGTGCCCCAACCCCCACTTAGCTGC...CAGGTGCAGAGGAGAGAACATCACACTCCAAGCAAGCACAGAGCTTTGCTCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp CCTGGCTCCTGGAGCAGTGCAGGCAGACTTCTCTTCTaGGAGGCCATTTTCAGGCTGAGACCTGCTAGAGAC +
Preference number: 3 (lower is better)
Translates to: PGSWSSAGRLLF*EAIFRLRPARD
Trigger: GTCTCTAGCAGGTCTCAGCCTGAAAATGGCCTCTCAGAAGAGAAGTCTGCCTGCACTGCTCCAGGAGCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp CCTCATTCCCTAGGATCCAGTTATCAGAGGGCCACCTaGCAACCATCTGACCATGGCCTTTCATTGGGCCCA +
Preference number: 3 (lower is better)
Translates to: PHSLGSSYQRAT*QPSDHGLSLGP
Trigger: TGGGCCCAATGAAAGGCCATGGTCAGATGGTTGGCAGGTGGCCCTCTGATAACTGGATCCTAGGGAATGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp GTGTTCAAGTCCTCAACCTTGCCACTGCTACCAGGGTaGGGGATTTCCAGCTCAGACTTGCTCTCTGTTCCC +
Preference number: 3 (lower is better)
Translates to: VFKSSTLPLLPG*GISSSDLLSVP
Trigger: GGGAACAGAGAGCAAGTCTGAGCTGGAAATCCCCCACCCTGGTAGCAGTGGCAAGGTTGAGGACTTGAACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp TGTGAAACCGGAGCACACCCAGTCTCCAGGCTGTGGTaGAGATCGATCCACCGGGCCAATCAGAAATGTTCT +
Preference number: 3 (lower is better)
Translates to: CETGAHPVSRLW*RSIHRANQKCS
Trigger: AGAACATTTCTGATTGGCCCGGTGGATCGATCTCCACCACAGCCTGGAGACTGGGTGTGCTCCGGTTTCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp CCACCTTGGCCTCTCCTGGTTGGAGGGAGCACAAGCTaGACTGAGGTTGCTTTGGCAAGATCTCTTACTGAG +
Preference number: 3 (lower is better)
Translates to: PPWPLLVGGSTS*TEVALARSLTE
Trigger: CTCAGTAAGAGATCTTGCCAAAGCAACCTCAGTTCAGCTTGTGCTCCCTCCAACCAGGAGAGGCCAAGGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp CAGGCAGACTTCTCTTCTGAGAGGCCATTTTCAGGCTaGGACCTGCTAGAGACTCCGAGGCCACATCTCACA +
Preference number: 3 (lower is better)
Translates to: QADFSSERPFSG*DLLETPRPHLT
Trigger: TGTGAGATGTGGCCTCGGAGTCTCTAGCAGGTCTCAGCCTGAAAATGGCCTCTCAGAAGAGAAGTCTGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp CCGGGTAGAGCCAGTGTGAGACAAAGCCCTGGATACTaGCCTTGCTCTAAACATAGATCAATCCGGGCACAG +
Preference number: 3 (lower is better)
Translates to: PGRASVRQSPGY*PCSKHRSIRAQ
Trigger: CTGTGCCCGGATTGATCTATGTTTAGAGCAAGGGCAGTATCCAGGGCTTTGTCTCACACTGGCTCTACCCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp GGCAGGTTCCAGCCTCCATCTTGTCAGTTCAGAGAATaGGAGACCTTGAACCTGCATCAACATGGCTCCCCT +
Preference number: 3 (lower is better)
Translates to: GRFQPPSCQFRE*ETLNLHQHGSP
Trigger: AGGGGAGCCATGTTGATGCAGGTTCAAGGTCTCCCATTCTCTGAACTGACAAGATGGAGGCTGGAACCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp AATCACAAGGCACCTTCCATCCACCTTGGCCTCTCCTaGTTGGAGGGAGCACAAGCTGAACTGAGGTTGCTT +
Preference number: 3 (lower is better)
Translates to: NHKAPSIHLGLS*LEGAQAELRLL
Trigger: AAGCAACCTCAGTTCAGCTTGTGCTCCCTCCAACCAGGAGAGGCCAAGGTGGATGGAAGGTGCCTTGTGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp TCGCCAGCTTCTTGCAGGGACACATCCTTCTTAAGTTaGAGCTGCTGCTTTCCTGCCCTTCACCCCTTGCTT +
Preference number: 3 (lower is better)
Translates to: SPASCRDTSFLS*SCCFPALHPLL
Trigger: AAGCAAGGGGTGAAGGGCAGGAAAGCAGCAGCTCCAACTTAAGAAGGATGTGTCCCTGCAAGAAGCTGGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp GGGCCACCTGCCAACCATCTGACCATGGCCTTTCATTaGGCCCATCCCTTTCTGGATGTATGCTTGCTTTTG +
Preference number: 3 (lower is better)
Translates to: GPPANHLTMAFH*AHPFLDVCLLL
Trigger: CAAAAGCAAGCATACATCCAGAAAGGGATGGGCCCAATGAAAGGCCATGGTCAGATGGTTGGCAGGTGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp AGAGTCTCATATTTGCTGCTAGGACAGGGTGGCCATTaGGGAGTCTGTCTCCTCACCTGTGAAACCGGAGCA +
Preference number: 3 (lower is better)
Translates to: RVSYLLLGQGGH*GVCLLTCETGA
Trigger: TGCTCCGGTTTCACAGGTGAGGAGACAGACTCCTCAATGGCCACCCTGTCCTAGCAGCAAATATGAGACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp GTATCTGCTATGTGTTCAAGTCCTCAACCTTGCCACTaGTACCAGGGTGGGGGATTTCCAGCTCAGACTTGC +
Preference number: 3 (lower is better)
Translates to: VSAMCSSPQPCH*YQGGGFPAQTC
Trigger: GCAAGTCTGAGCTGGAAATCCCCCACCCTGGTAGCAGTGGCAAGGTTGAGGACTTGAACACATAGCAGATAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp ACCGTGGAGACCACTCTGAGCTCAGCACCTTACTGTTaGCTGCTCTCAGAGAACACAAAGGATAGGCTGACA +
Preference number: 3 (lower is better)
Translates to: TVETTLSSAPYC*LLSENTKDRLT
Trigger: TGTCAGCCTATCCTTTGTGTTCTCTGAGAGCAGCCAACAGTAAGGTGCTGAGCTCAGAGTGGTCTCCACGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp CTCTCTGTCTCTCTGTCTCTCTCTCTCTCTCTCAGCTaGGAGGTAGGGTGGATAAAGGAACACCCCACAGTT +
Preference number: 3 (lower is better)
Translates to: LSVSLSLSLSLS*EVGWIKEHPTV
Trigger: AACTGTGGGGTGTTCCTTTATCCACCCTACCTCTCAGCTGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp GGGTTAGGGAGTAGAGCTTCCTTAGTTCCATTCCTATaGGAGGCATCCCCAGGGAGCTTCTTCAGTCTCTCT +
Preference number: 3 (lower is better)
Translates to: GLGSRASLVPFL*EASPGSFFSLS
Trigger: AGAGAGACTGAAGAAGCTCCCTGGGGATGCCTCTCATAGGAATGGAACTAAGGAAGCTCTACTCCCTAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp GATGACGTCATAGCAGTCTGGGCTCTCACAACACCTTaGAATCCAGGTCTTTATAGGTTATGCTGGGCCTCC +
Preference number: 3 (lower is better)
Translates to: DDVIAVWALTTP*NPGLYRLCWAS
Trigger: GGAGGCCCAGCATAACCTATAAAGACCTGGATTGCAAGGTGTTGTGAGAGCCCAGACTGCTATGACGTCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp GGACACATCCTTCTTAAGTTGGAGCTGCTGCTTTCCTaGCCTTCACCCCTTGCTTTGCTTAGATCCCAGGAA +
Preference number: 3 (lower is better)
Translates to: GHILLKLELLLS*PSPLALLRSQE
Trigger: TTCCTGGGATCTAAGCAAAGCAAGGGGTGAAGGGCAGGAAAGCAGCAGCTCCAACTTAAGAAGGATGTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp CCCCACAGTTTCTTCAGAGCCAGTGATCACACATGCTaGCATTCTATCTTAGCTTCGCCAGCTTCTTGCAGG +
Preference number: 3 (lower is better)
Translates to: PHSFFRASDHTC*HSILASPASCR
Trigger: CCTGCAAGAAGCTGGCGAAGCTAAGATAGAATGCCAGCATGTGTGATCACTGGCTCTGAAGAAACTGTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp GGTAGATACTGTGTGGAGCAAAGCTCTGTGCTTGCTTaGAGTGTGATGTTCTCTCCTCTGCACCTGTGGGAT +
Preference number: 3 (lower is better)
Translates to: GRYCVEQSSVLA*SVMFSPLHLWD
Trigger: ATCCCACAGGTGCAGAGGAGAGAACATCACACTCCAAGCAAGCACAGAGCTTTGCTCCACACAGTATCTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CAA 90 bp CAGGAAGCTGTGTGTGAAGGGCATTGCCATCAGAGCAGCATCCTTTTCCTATGTGCTGGGCCTCCCTGTTaGTATTTATGTCCTCCAGAA +
Preference number: 3 (lower is better)
Translates to: QEAVCEGHCHQSSILFLCAGPPC*YLCPPE
Trigger: TTCTGGAGGACATAAATACAAACAGGGAGGCCCAGC...ACATAGGAAAAGGATGCTGCTCTGATGGCAATGCCCTTCACACACAGCTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CAA 90 bp CTTCGACTCCACTCTGTCACGCAGCGTTGTCAAGTCTTCTGGCTTTCCCATCCATTTCTGGATGTATGCTaGCTTTTGTCCACTGAGGGT +
Preference number: 3 (lower is better)
Translates to: LRLHSVTQRCQVFWLSHPFLDVC*LLSTEG
Trigger: ACCCTCAGTGGACAAAAGCAAGCATACATCCAGAAA...TGGATGGGAAAGCCAGAAGACTTGACAACGCTGCGTGACAGAGTGGAGTCGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp TTAATACATAAGACAGTTAAAGCAGGCGTCTCTGACTaGTGTGGGGGTATGGCCCCCAGGGCTTCTCCGAAT +
Preference number: 3 (lower is better)
Translates to: LIHKTVKAGVSD*CGGMAPRASPN
Trigger: ATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAGAGACGCCTGCTTTAACTGTCTTATGTATTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
3UTR TCA 72 bp ACACAAAACAGGCTCAGAGGACTTCTGTGTGTTAACTaGCGTCACACAGGAAGAAGCCATTTAGCTGGGGCG +
Preference number: 3 (lower is better)
Translates to: TQNRLRGLLCVN*RHTGRSHLAGA
Trigger: CGCCCCAGCTAAATGGCTTCTTCCTGTGTGACGTCAGTTAACACACAGAAGTCCTCTGAGCCTGTTTTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp GAGAGCCAAGGTGTACCCTGGGCAAATCAACCACAGTaGTGTTTCAAGCTTAGGTTTACAGGTGTCCCTGAC +
Preference number: 3 (lower is better)
Translates to: ESQGVPWANQPQ*CFKLRFTGVPD
Trigger: GTCAGGGACACCTGTAAACCTAAGCTTGAAACATCACTGTGGTTGATTTGCCCAGGGTACACCTTGGCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp TTCTATGTATCTGCTATGTGTTCAAGTCCTCAACCTTaGCACTGCTACCAGGGTGGGGGATTTCCAGCTCAG +
Preference number: 3 (lower is better)
Translates to: FYVSAMCSSPQP*HCYQGGGFPAQ
Trigger: CTGAGCTGGAAATCCCCCACCCTGGTAGCAGTGGCAAGGTTGAGGACTTGAACACATAGCAGATACATAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp TCTTGCAGGGACACATCCTTCTTAAGTTGGAGCTGCTaGTTTCCTGCCCTTCACCCCTTGCTTTGCTTAGAT +
Preference number: 3 (lower is better)
Translates to: SCRDTSFLSWSC*FPALHPLLCLD
Trigger: ATCTAAGCAAAGCAAGGGGTGAAGGGCAGGAAAGCAGCAGCTCCAACTTAAGAAGGATGTGTCCCTGCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp ACATGCTGGCATTCTATCTTAGCTTCGCCAGCTTCTTaGAGGGACACATCCTTCTTAAGTTGGAGCTGCTGC +
Preference number: 3 (lower is better)
Translates to: TCWHSILASPAS*RDTSFLSWSCC
Trigger: GCAGCAGCTCCAACTTAAGAAGGATGTGTCCCTGCAAGAAGCTGGCGAAGCTAAGATAGAATGCCAGCATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp ACACCCCACAGTTTCTTCAGAGCCAGTGATCACACATaGTGGCATTCTATCTTAGCTTCGCCAGCTTCTTGC +
Preference number: 3 (lower is better)
Translates to: TPHSFFRASDHT*WHSILASPASC
Trigger: GCAAGAAGCTGGCGAAGCTAAGATAGAATGCCAGCATGTGTGATCACTGGCTCTGAAGAAACTGTGGGGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp AAACTACCATGCATGAGTCTGTTCAGAAGCAGAGAATaGGGCTCGCAGGACCAATCTCTAGGCATGTGGAAC +
Preference number: 3 (lower is better)
Translates to: KLPCMSLFRSRE*GSQDQSLGMWN
Trigger: GTTCCACATGCCTAGAGATTGGTCCTGCGAGCCCCATTCTCTGCTTCTGAACAGACTCATGCATGGTAGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp AGACTATGTCAGGTACTTTGGGAAAACTACCATGCATaGGTCTGTTCAGAAGCAGAGAATGGGGCTCGCAGG +
Preference number: 3 (lower is better)
Translates to: RLCQVLWENYHA*VCSEAENGARR
Trigger: CCTGCGAGCCCCATTCTCTGCTTCTGAACAGACTCATGCATGGTAGTTTTCCCAAAGTACCTGACATAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp CAGCATCAATTCTTACTGTCTGCTCCCCATCACAGCTaGCTGTATGCTTATGCCCAATGTGCTAGCACAGAA +
Preference number: 3 (lower is better)
Translates to: QHQFLLSAPHHS*LYAYAQCASTE
Trigger: TTCTGTGCTAGCACATTGGGCATAAGCATACAGCCAGCTGTGATGGGGAGCAGACAGTAAGAATTGATGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CAA 90 bp TCTAGCATTTTCCCCACTTGTCTTCCTGGGACAGCATCAATTCTTACTGTCTGCAGAGAATGGGAGACCTaGAACCTGCATCAACATGGC +
Preference number: 3 (lower is better)
Translates to: SSIFPTCLPGTASILTVCREWET*NLHQHG
Trigger: GCCATGTTGATGCAGGTTCAAGGTCTCCCATTCTCT...GCAGACAGTAAGAATTGATGCTGTCCCAGGAAGACAAGTGGGGAAAATGCTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CAA 90 bp TCTAGCATTTTCCCCACTTGTCTTCCTGGGACAGCATCAATTCTTACTGTCTGCGTTCCAGCCTCCATCTaGTCAGTTCAGAGAATGGGA +
Preference number: 3 (lower is better)
Translates to: SSIFPTCLPGTASILTVCVPASI*SVQRMG
Trigger: TCCCATTCTCTGAACTGACAAGATGGAGGCTGGAAC...GCAGACAGTAAGAATTGATGCTGTCCCAGGAAGACAAGTGGGGAAAATGCTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CAA 90 bp CTTCGACTCCACTCTGTCACGCAGCGTTGTCAAGTCTTCTGGCTTTCCCATCCAGAATTTAATGTCAGGTaGACTCTAAGGGAGTACACA +
Preference number: 3 (lower is better)
Translates to: LRLHSVTQRCQVFWLSHPEFNVR*TLREYT
Trigger: TGTGTACTCCCTTAGAGTCAACCTGACATTAAATTC...TGGATGGGAAAGCCAGAAGACTTGACAACGCTGCGTGACAGAGTGGAGTCGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp TTTAGTGGGGGAAATGTCCATCTCCAGACTACCAGCTaGGCACAGGAAGTAGTCAAGGATTATGACTGCAGA +
Preference number: 3 (lower is better)
Translates to: FSGGNVHLQTTS*AQEVVKDYDCR
Trigger: TCTGCAGTCATAATCCTTGACTACTTCCTGTGCTCAGCTGGTAGTCTGGAGATGGACATTTCCCCCACTAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR TCA 72 bp CGAATGAGGGAGGAGAACCATAGATGGAAAGCTAAATaGTCAATCTACAGGGATGGTGGAAGAGACGCTTCG +
Preference number: 3 (lower is better)
Translates to: RMREENHRWKAK*SIYRDGGRDAS
Trigger: CGAAGCGTCTCTTCCACCATCCCTGTAGATTGATCATTTAGCTTTCCATCTATGGTTCTCCTCCCTCATTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp TTGCTTAGATCCCAGGAAGCTGTGTGTGAAGGGCATTaGCATCAGAGCAGCATCCTTTTCCTATGTGCATTT +
Preference number: 3 (lower is better)
Translates to: LLRSQEAVCEGH*HQSSILFLCAF
Trigger: AAATGCACATAGGAAAAGGATGCTGCTCTGATGGCAATGCCCTTCACACACAGCTTCCTGGGATCTAAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp AGCCTAAGCTTATATCAGGCTCTGAGCCACTGGTATTaGTGTCTGCTTCAATCCTTTTCCTCTTTCAAGGGA +
Preference number: 3 (lower is better)
Translates to: SLSLYQALSHWY*CLLQSFSSFKG
Trigger: TCCCTTGAAAGAGGAAAAGGATTGAAGCAGACAGCAATACCAGTGGCTCAGAGCCTGATATAAGCTTAGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR GCA 72 bp AAGCACGTCCAGACCAAGAAGCATTTTCTATGTATCTaGTATGTGTTCAAGTCCTCAACCTTGCCACTGCTA +
Preference number: 3 (lower is better)
Translates to: KHVQTKKHFLCI*YVFKSSTLPLL
Trigger: TAGCAGTGGCAAGGTTGAGGACTTGAACACATAGCAGATACATAGAAAATGCTTCTTGGTCTGGACGTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CCA 72 bp CAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTaGAGAACAAGTACAGAGGCACGCGACGATTATATA +
Preference number: 3 (lower is better)
Translates to: QEEIIYSRGSTR*RTSTEARDDYI
Trigger: TATATAATCGTCGCGTGCCTCTGTACTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
3UTR CCA 72 bp ATTCATCCTTTCTTTCAGGGTTCCACATCTGTCACCTaGGCACTTAATTATGAAATTTCTGTCCCAGTTGCC +
Preference number: 3 (lower is better)
Translates to: IHPFFQGSTSVT*ALNYEISVPVA
Trigger: GGCAACTGGGACAGAAATTTCATAATTAAGTGCCCAGGTGACAGATGTGGAACCCTGAAAGAAAGGATGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR-3UTR CAA 90 bp TCTAGCATTTTCCCCACTTGTCTTCCTGGGACAGCATCAATTCTTACTGTCTGCAGCAGAAGGAGGAATTaGAATTCACTTTGGTTAAGA +
Preference number: 3 (lower is better)
Translates to: SSIFPTCLPGTASILTVCSRRRN*NSLWLR
Trigger: TCTTAACCAAAGTGAATTCAAATTCCTCCTTCTGCT...GCAGACAGTAAGAATTGATGCTGTCCCAGGAAGACAAGTGGGGAAAATGCTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR GCA 90 bp AGACAGTTAAAGCAGGCGTCTCTGACTGATGTGGGGGTATGGCCCCCAGGGCTTCGTGCCGTCCTTCTGTaGCAGCAGTCCCAGGGTCAC +
Preference number: 4 (lower is better)
Translates to: RQLKQASLTDVGVWPPGLRAVLL*QQSQGH
Trigger: GTGACCCTGGGACTGCTGGCACAGAAGGACGGCACG...AAGCCCTGGGGGCCATACCCCCACATCAGTCAGAGACGCCTGCTTTAACTGTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS-3UTR GCA 90 bp CTGACTGATGTGGGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGGAGAACTGTCCGCACTCCTCTTaGTCAGGTAGCCTTTGCGCG +
Preference number: 4 (lower is better)
Translates to: LTDVGVWPPGLLRMREENCPHSS*SGSLCA
Trigger: CGCGCAAAGGCTACCTGAGCAAGAGGAGTGCGGACA...GTTCTCCTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
3UTR CAA 72 bp AGGCCAGGGAGGTACCCTGCAGCAGCTAAGTGGGGGTaGGGGCACGATGCACCAATCTCATTTCAGGAGACC +
Preference number: 4 (lower is better)
Translates to: RPGRYPAAAKWG*GHDAPISFQET
Trigger: GGTCTCCTGAAATGAGATTGGTGCATCGTGCCCCAACCCCCACTTAGCTGCTGCAGGGTACCTCCCTGGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR TCA 90 bp GCGTCTCTGACTGATGTGGGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGCAATTGCCACCAGCCTaGATGTTTTTGAGATCCTGG +
Preference number: 4 (lower is better)
Translates to: ASLTDVGVWPPGLLRMREQLPPA*MFLRSW
Trigger: CCAGGATCTCAAAAACATTCAGGCTGGTGGCAATTG...CTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAGAGACGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS-3UTR GCA 90 bp CTTGCCCTAGGTAGATACTGTGTGGAGCAAAGCTCTGTGCTTGCTTGGAGTGTGCGTGCCGTCCTTCTGTaGCAGCAGTCCCAGGGTCAC +
Preference number: 4 (lower is better)
Translates to: LALGRYCVEQSSVLAWSVRAVLL*QQSQGH
Trigger: GTGACCCTGGGACTGCTGGCACAGAAGGACGGCACG...CACACTCCAAGCAAGCACAGAGCTTTGCTCCACACAGTATCTACCTAGGGCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR CCA 90 bp AGACAGTTAAAGCAGGCGTCTCTGACTGATGTGGGGGTATGGCCCCCAGGGCTTTCCCATCCATGTCTGTaGAGCTGGAGCAACGGTACC +
Preference number: 4 (lower is better)
Translates to: RQLKQASLTDVGVWPPGLSHPCL*SWSNGT
Trigger: GGTACCGTTGCTCCAGCTCCACAGACATGGATGGGA...AAGCCCTGGGGGCCATACCCCCACATCAGTCAGAGACGCCTGCTTTAACTGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000034909.11
3UTR CAA 72 bp CACAAGGCACCTTCCATCCACCTTGGCCTCTCCTGGTaGGAGGGAGCACAAGCTGAACTGAGGTTGCTTTGG +
Preference number: 4 (lower is better)
Translates to: HKAPSIHLGLSW*EGAQAELRLLW
Trigger: CCAAAGCAACCTCAGTTCAGCTTGTGCTCCCTCCAACCAGGAGAGGCCAAGGTGGATGGAAGGTGCCTTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR GCA 90 bp CTTCGACTCCACTCTGTCACGCAGCGTTGTCAAGTCTTCTGGCTTTCCCATCCATGTCCGCACTCCTCTTaGTCAGGTAGCCTTTGCGCG +
Preference number: 4 (lower is better)
Translates to: LRLHSVTQRCQVFWLSHPCPHSS*SGSLCA
Trigger: CGCGCAAAGGCTACCTGAGCAAGAGGAGTGCGGACA...TGGATGGGAAAGCCAGAAGACTTGACAACGCTGCGTGACAGAGTGGAGTCGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR CCA 90 bp GATGTGGGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGGAGAACCATAGAAATCTACAGGGATGGTaGAAGAGACGCTTCGACTCC +
Preference number: 4 (lower is better)
Translates to: DVGVWPPGLLRMREENHRNLQGW*KRRFDS
Trigger: GGAGTCGAAGCGTCTCTTCCACCATCCCTGTAGATT...TCTATGGTTCTCCTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000034909.11
3UTR CAA 72 bp TCTTTCAAGGGAATCACAAGGCACCTTCCATCCACCTaGGCCTCTCCTGGTTGGAGGGAGCACAAGCTGAAC +
Preference number: 4 (lower is better)
Translates to: SFKGITRHLPST*ASPGWREHKLN
Trigger: GTTCAGCTTGTGCTCCCTCCAACCAGGAGAGGCCAAGGTGGATGGAAGGTGCCTTGTGATTCCCTTGAAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CAA 72 bp TTCGCCAGCTTCTTGCAGGGACACATCCTTCTTAAGTaGGAGCTGCTGCTTTCCTGCCCTTCACCCCTTGCT +
Preference number: 4 (lower is better)
Translates to: FASFLQGHILLK*ELLLSCPSPLA
Trigger: AGCAAGGGGTGAAGGGCAGGAAAGCAGCAGCTCCAACTTAAGAAGGATGTGTCCCTGCAAGAAGCTGGCGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CAA 72 bp GGAAGAGACGCTTCGACTCCACTCTGTCACGCAGCGTaGTCAAGTCTTCTGGCTTTCCCATCCATGTCTGTG +
Preference number: 4 (lower is better)
Translates to: GRDASTPLCHAA*SSLLAFPSMSV
Trigger: CACAGACATGGATGGGAAAGCCAGAAGACTTGACAACGCTGCGTGACAGAGTGGAGTCGAAGCGTCTCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR GCA 90 bp TACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGCCACCTGGTTCCTCTTaGGCATGCTGTCCGCGTGGG +
Preference number: 4 (lower is better)
Translates to: YGTRRDNIFSGKHTLENKPPGSS*ACCPRG
Trigger: CCCACGCGGACAGCATGCGCAAGAGGAACCAGGTGG...CTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTGTGGCGAGGAGAACTTaGGGCTGGCGCGAGGGGACT +
Preference number: 4 (lower is better)
Translates to: GTRRLYTIIVKQVFTEAAVARRT*GWREGT
Trigger: AGTCCCCTCGCGCCAGCCGCAAGTTCTCCTCGCCAC...AGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp CACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTGGCCAGGGTGGGCCAGCTaGAGATACGGGCCTTCAGGC +
Preference number: 4 (lower is better)
Translates to: HATIIYNNRKAGVHRSSWPGWAS*RYGPSG
Trigger: GCCTGAAGGCCCGTATCTCCAGCTGGCCCACCCTGG...CCAGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
3UTR CAA 72 bp CATTGGGCCCATCCCTTTCTGGATGTATGCTTGCTTTaGTCCACTGAGGGTCACTGTCTCTGGGCATCCTCT +
Preference number: 4 (lower is better)
Translates to: HWAHPFLDVCLL*STEGHCLWASS
Trigger: AGAGGATGCCCAGAGACAGTGACCCTCAGTGGACAAAAGCAAGCATACATCCAGAAAGGGATGGGCCCAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CAA 72 bp AGGGCCACCTGCCAACCATCTGACCATGGCCTTTCATaGGGCCCATCCCTTTCTGGATGTATGCTTGCTTTT +
Preference number: 4 (lower is better)
Translates to: RATCQPSDHGLS*GPSLSGCMLAF
Trigger: AAAAGCAAGCATACATCCAGAAAGGGATGGGCCCAATGAAAGGCCATGGTCAGATGGTTGGCAGGTGGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR TCA 90 bp GGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGGAGAACCATAGATGGAAACAGCCTGAATGTTTTTaGGATCCTGGTTGGTTGTCT +
Preference number: 4 (lower is better)
Translates to: GVWPPGLLRMREENHRWKQPECF*DPGWLS
Trigger: AGACAACCAACCAGGATCTCAAAAACATTCAGGCTG...TTTCCATCTATGGTTCTCCTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS-3UTR TCA 90 bp GAGACGCTTCGACTCCACTCTGTCACGCAGCGTTGTCAAGTCTTCTGGCTTTCCCAATTGCCACCAGCCTaGATGTTTTTGAGATCCTGG +
Preference number: 4 (lower is better)
Translates to: ETLRLHSVTQRCQVFWLSQLPPA*MFLRSW
Trigger: CCAGGATCTCAAAAACATTCAGGCTGGTGGCAATTG...GGAAAGCCAGAAGACTTGACAACGCTGCGTGACAGAGTGGAGTCGAAGCGTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR TCA 90 bp CAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCCCTGGGTGTGCTTGGTaGCCCAGTGGCGGAGCACAT +
Preference number: 4 (lower is better)
Translates to: QRHATIIYNNRKAGVHRSPGCAW*PSGGAH
Trigger: ATGTGCTCCGCCACTGGGTCACCAAGCACACCCAGG...GCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGTACGGTAGCCTTTGCGCGTaGCGTCCTTCTGTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: GTRRDNIFSGKHTLENKYGSLCA*RPSVPA
Trigger: TGCTGGCACAGAAGGACGGCACGCGCAAAGGCTACC...GTACTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGTACAGGTTCCTCTTGCGCATaGTGTCCGCGTGGGGAGACC +
Preference number: 4 (lower is better)
Translates to: GQEEIIYSRGSTRWRTSTGSSCA*CPRGET
Trigger: GGTCTCCCCACGCGGACAGCATGCGCAAGAGGAACC...TGTACTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp ATAAGACAGTTAAAGCAGGCGTCTCTGACTGATGTGGGGGTATGGCCCCCAGGGCGTTGTCAAGTCTTCTaGCTTTCCCATCCATGTCTG +
Preference number: 4 (lower is better)
Translates to: IRQLKQASLTDVGVWPPGRCQVF*LSHPCL
Trigger: CAGACATGGATGGGAAAGCCAGAAGACTTGACAACG...CCCTGGGGGCCATACCCCCACATCAGTCAGAGACGCCTGCTTTAACTGTCTTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000034909.11
CDS-3UTR TCA 90 bp TCTGATTCAGGTCACGTTACTGTTCAGGGCTGGGAAGAGAGGACGTCAGGGCTGCAGCCTGAATGTTTTTaGGATCCTGGTTGGTTGTCT +
Preference number: 4 (lower is better)
Translates to: SDSGHVTVQGWEERTSGLQPECF*DPGWLS
Trigger: AGACAACCAACCAGGATCTCAAAAACATTCAGGCTG...CAGCCCTGACGTCCTCTCTTCCCAGCCCTGAACAGTAACGTGACCTGAATCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR GCA 90 bp GGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGGAGAACCATAGATGGAAACCCAGTCAATTCAATTaGCACCAGCCTGAATGTTTT +
Preference number: 4 (lower is better)
Translates to: GVWPPGLLRMREENHRWKPSQFN*HQPECF
Trigger: AAAACATTCAGGCTGGTGGCAATTGAATTGACTGGG...TTTCCATCTATGGTTCTCCTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS-3UTR GCA 90 bp GGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGTACCTTCTCGATGGCGCTTaGCCTTGCGCTGATGTCCTC +
Preference number: 4 (lower is better)
Translates to: GTRRDNIFSGKHTLENKYLLDGA*PCADVL
Trigger: GAGGACATCAGCGCAAGGGCAAGCGCCATCGAGAAG...GTACTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp CAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCTGGCGCACGAAGGTCTaGCTGGTGTCCAGGAGGATC +
Preference number: 4 (lower is better)
Translates to: QRHATIIYNNRKAGVHRSWRTKV*LVSRRI
Trigger: GATCCTCCTGGACACCAGCCAGACCTTCGTGCGCCA...GCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp CGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAGAGTTCCAGGGACCTaGCAGGAATCGCACTCATGG +
Preference number: 4 (lower is better)
Translates to: RFYGTRRDNIFSGKHTLERVPGT*QESHSW
Trigger: CCATGAGTGCGATTCCTGCCAGGTCCCTGGAACTCT...CTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
3UTR CAA 72 bp CAGCCTCCATCTTGTCAGTTCAGAGAATGGGAGACCTaGAACCTGCATCAACATGGCTCCCCTATTCCGTCT +
Preference number: 4 (lower is better)
Translates to: QPPSCQFREWET*NLHQHGSPIPS
Trigger: AGACGGAATAGGGGAGCCATGTTGATGCAGGTTCAAGGTCTCCCATTCTCTGAACTGACAAGATGGAGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
3UTR CAA 72 bp CTCTCCTGGTTGGAGGGAGCACAAGCTGAACTGAGGTaGCTTTGGCAAGATCTCTTACTGAGAAGCCAGCAT +
Preference number: 4 (lower is better)
Translates to: LSWLEGAQAELR*LWQDLLLRSQH
Trigger: ATGCTGGCTTCTCAGTAAGAGATCTTGCCAAAGCAACCTCAGTTCAGCTTGTGCTCCCTCCAACCAGGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR TCA 90 bp GTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGACGGCCTCCAGCATGCTaGACACCACCTGGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: VQRHATIIYNNRKAGVHRRPPAC*TPPGSS
Trigger: AGAGGAACCAGGTGGTGTTCAGCATGCTGGAGGCCG...TCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp TATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCGGAAGGTCTCCAGTGTaGGCTCCTCGCAGTCTGGCT +
Preference number: 4 (lower is better)
Translates to: YFGFTGQEEIIYSRGSTRGRSPV*APRSLA
Trigger: AGCCAGACTGCGAGGAGCGCACACTGGAGACCTTCC...GCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp CGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGGAGTCTTGGGTAAGCTaGTGGCCATACAGAGCTTGC +
Preference number: 4 (lower is better)
Translates to: RFYGTRRDNIFSGKHTLEESWVS*WPYRAC
Trigger: GCAAGCTCTGTATGGCCAGCAGCTTACCCAAGACTC...CTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGTACATCCAGCAGGGTCAGCTaGTCTGCTATCTCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: GQEEIIYSRGSTRWRTSTSSRVS*SAISRA
Trigger: AGCCCTGGAGATAGCAGAGCAGCTGACCCTGCTGGA...TGTACTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp TATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCGCGCTCCTCGCAGTCTaGCTTGGCCTCGTACTGCTT +
Preference number: 4 (lower is better)
Translates to: YFGFTGQEEIIYSRGSTRALLAV*LGLVLL
Trigger: AAGCAGTACGAGGCCAAGCCAGACTGCGAGGAGCGC...GCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp ACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTGGGGCACGAAGGTCTGGCTaGTGTCCAGGAGGATCTCAC +
Preference number: 4 (lower is better)
Translates to: TRRLYTIIVKQVFTEAAGARRSG*CPGGSH
Trigger: GTGAGATCCTCCTGGACACCAGCCAGACCTTCGTGC...CCCAGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp GGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTCTCCCCAGGCTTCTCTaGAATCGTGGCAGGCACATC +
Preference number: 4 (lower is better)
Translates to: GTRRLYTIIVKQVFTEAALPRLL*NRGRHI
Trigger: GATGTGCCTGCCACGATTCCAGAGAAGCCTGGGGAG...AGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
3UTR CAA 72 bp CACATGCTGGCATTCTATCTTAGCTTCGCCAGCTTCTaGCAGGGACACATCCTTCTTAAGTTGGAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: HMLAFYLSFASF*QGHILLKLELL
Trigger: CAGCAGCTCCAACTTAAGAAGGATGTGTCCCTGCAAGAAGCTGGCGAAGCTAAGATAGAATGCCAGCATGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR TCA 90 bp CGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGTCAGACTTGATCATCTaGGGCACGGTGACCTTGGAA +
Preference number: 4 (lower is better)
Translates to: RFYGTRRDNIFSGKHTLESDLII*GTVTLE
Trigger: TTCCAAGGTCACCGTGCCTCAGATGATCAAGTCTGA...CTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp GGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGTACATGCTGAACACCACCTaGTTCCTCTTGCGCATGCTG +
Preference number: 4 (lower is better)
Translates to: GTRRDNIFSGKHTLENKYMLNTT*FLLRML
Trigger: CAGCATGCGCAAGAGGAACCAGGTGGTGTTCAGCAT...GTACTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp ACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTGGGATCTGGAGGCTGTACTaGTGGTTGCGGACGAACTCC +
Preference number: 4 (lower is better)
Translates to: TRRLYTIIVKQVFTEAAGIWRLY*WLRTNS
Trigger: GGAGTTCGTCCGCAACCACCAGTACAGCCTCCAGAT...CCCAGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp CGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGGTGTCAGGATGTACCTaGGGATCTGGAACATTGGGT +
Preference number: 4 (lower is better)
Translates to: RFYGTRRDNIFSGKHTLEVSGCT*GSGTLG
Trigger: ACCCAATGTTCCAGATCCCCAGGTACATCCTGACAC...CTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp CAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGGATGGCCAAGGGCGGTaGCGAGGAGAACTTGCGGCT +
Preference number: 4 (lower is better)
Translates to: QTFVFRFYGTRRDNIFSGDGQGR*RGELAA
Trigger: AGCCGCAAGTTCTCCTCGCCACCGCCCTTGGCCATC...CCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
3UTR CAA 72 bp TTTCTATGTATCTGCTATGTGTTCAAGTCCTCAACCTaGCCACTGCTACCAGGGTGGGGGATTTCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: FLCICYVFKSST*PLLPGWGISSS
Trigger: TGAGCTGGAAATCCCCCACCCTGGTAGCAGTGGCAAGGTTGAGGACTTGAACACATAGCAGATACATAGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR TCA 90 bp TATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCACAAGGACATCTGCATaGGGGAACCTTGGCGCACGA +
Preference number: 4 (lower is better)
Translates to: YFGFTGQEEIIYSRGSTRTRTSA*GNLGAR
Trigger: TCGTGCGCCAAGGTTCCCTCATGCAGATGTCCTTGT...GCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR TCA 90 bp GTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGACTCTTGAAGACAAGGTaGTCCAGCAGGGTCAGCTGC +
Preference number: 4 (lower is better)
Translates to: VQRHATIIYNNRKAGVHRLLKTR*SSRVSC
Trigger: GCAGCTGACCCTGCTGGATCACCTTGTCTTCAAGAG...TCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR TCA 90 bp CACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTGGTCATCTTGGAGAAGTTaGCCAGGCCGTCCTCTGTGT +
Preference number: 4 (lower is better)
Translates to: HATIIYNNRKAGVHRSSWSSWRS*PGRPLC
Trigger: ACACAGAGGACGGCCTGGTCAACTTCTCCAAGATGA...CCAGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp AGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGACGTGCCGTCCTTCTGTaGCAGCAGTCCCAGGGTCAC +
Preference number: 4 (lower is better)
Translates to: RHLYFGFTGQEEIIYSRGRAVLL*QQSQGH
Trigger: GTGACCCTGGGACTGCTGGCACAGAAGGACGGCACG...TCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GAACAAGTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTTGTCCGCACTCCTCTTaGTCAGGTAGCCTTTGCGCG +
Preference number: 4 (lower is better)
Translates to: EQVQRHATIIYNNRKAGVCPHSS*SGSLCA
Trigger: CGCGCAAAGGCTACCTGAGCAAGAGGAGTGCGGACA...AACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTACTTGTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAGGCTGTACTGGTGGTTaGGGACGAACTCCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: VQRHATIIYNNRKAGVHRGCTGG*GRTPGR
Trigger: TCTACCAGGAGTTCGTCCGCAACCACCAGTACAGCC...TCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp TACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGAGTCCCGGTTTTGCTTaGAGTGAGCAAGGATCTGGA +
Preference number: 4 (lower is better)
Translates to: YGTRRDNIFSGKHTLENKSPGFA*SEQGSG
Trigger: TCCAGATCCTTGCTCACTGCAAGCAAAACCGGGACT...CTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp ACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTGGGTCAGACAAGGACATCTaGATGAGGGAACCTTGGCGC +
Preference number: 4 (lower is better)
Translates to: TRRLYTIIVKQVFTEAAGSDKDI*MREPWR
Trigger: GCGCCAAGGTTCCCTCATGCAGATGTCCTTGTCTGA...CCCAGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp CAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGGACATCAGAGCTATaGTTCCTGGAGGCTGAGAGC +
Preference number: 4 (lower is better)
Translates to: QRHATIIYNNRKAGVHRSRTSEL*FLEAES
Trigger: GCTCTCAGCCTCCAGGAAGCATAGCTCTGATGTCCT...GCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGTACGATTGGTGGCAGCTCTaGGGATCACAAACTCCTTGT +
Preference number: 4 (lower is better)
Translates to: GTRRDNIFSGKHTLENKYDWWQL*GSQTPC
Trigger: ACAAGGAGTTTGTGATCCGCAGAGCTGCCACCAATC...GTACTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGTACACCTGATGATGTTGGCTaGTGCCTTTCGCTCTTGGGT +
Preference number: 4 (lower is better)
Translates to: GQEEIIYSRGSTRWRTSTPDDVG*CLSLLG
Trigger: ACCCAAGAGCGAAAGGCAGCAGCCAACATCATCAGG...TGTACTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp AAGTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAAGGATGTGTAGCTGCTaGACGTACTCAGCCTCGGCC +
Preference number: 4 (lower is better)
Translates to: KYRGTRRLYTIIVKQVFTRMCSC*TYSASA
Trigger: GGCCGAGGCTGAGTACGTCCAGCAGCTACACATCCT...TGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp TATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTTGAGGGGCCTTCATTaGCTCCTGCAGTCGCTATGG +
Preference number: 4 (lower is better)
Translates to: YFGFTGQEEIIYSRGSTRLRGLH*LLQSLW
Trigger: CCATAGCGACTGCAGGAGCCAATGAAGGCCCCTCAA...GCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp CAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCCATTCAGCACACGATTaGTGGCAGCTCTGCGGATCA +
Preference number: 4 (lower is better)
Translates to: QRHATIIYNNRKAGVHRSHSAHD*WQLCGS
Trigger: TGATCCGCAGAGCTGCCACCAATCGTGTGCTGAATG...GCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp AGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCATGCTATCTCCAGGGCTaGGTGGTTTTCGAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: RGTRRLYTIIVKQVFTEACYLQG*VVFEGL
Trigger: GAGCCCTTCGAAAACCACCCAGCCCTGGAGATAGCA...TGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR TCA 90 bp GGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGTACAGAAGGGAGATATGGGTaGGTGTATGTTGGCGTAGCT +
Preference number: 4 (lower is better)
Translates to: GQEEIIYSRGSTRWRTSTEGRYG*VYVGVA
Trigger: AGCTACGCCAACATACACTCACCCATATCTCCCTTC...TGTACTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GAAGGTCAAACACTTTATAGCATTAATATAGATGAGCTTTTCTGTGGAAGCCCAGGTAGCCTTTGCGCGTaGCGTCCTTCTGTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: EGQTLYSINIDELFCGSPGSLCA*RPSVPA
Trigger: TGCTGGCACAGAAGGACGGCACGCGCAAAGGCTACC...TGGGCTTCCACAGAAAAGCTCATCTATATTAATGCTATAAAGTGTTTGACCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS-3UTR GCA 90 bp TTTTCCTCTTTCAAGGGAATCACAAGGCACCTTCCATCCACCTTGGCCTCTCCTCCCAGTCAATTCAATTaGCACCAGCCTGAATGTTTT +
Preference number: 4 (lower is better)
Translates to: FSSFKGITRHLPSTLASPPSQFN*HQPECF
Trigger: AAAACATTCAGGCTGGTGGCAATTGAATTGACTGGG...AGGAGAGGCCAAGGTGGATGGAAGGTGCCTTGTGATTCCCTTGAAAGAGGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR GCA 90 bp AGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCACATAGTCCAGGCTGTTaGGCTCCACATGCTCATGAG +
Preference number: 4 (lower is better)
Translates to: RGTRRLYTIIVKQVFTEAHSPGC*APHAHE
Trigger: CTCATGAGCATGTGGAGCGCAACAGCCTGGACTATG...TGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GAACAAGTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCGTAGCTATCGGAGCTaGACCCAAGGGAAGCCAGTT +
Preference number: 4 (lower is better)
Translates to: EQVQRHATIIYNNRKAGVRSYRS*TQGKPV
Trigger: AACTGGCTTCCCTTGGGTGCAGCTCCGATAGCTACG...AACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTACTTGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp TCTAGCATTTTCCCCACTTGTCTTCCTGGGACAGCATCAATTCTTACTGTCTGCCTTGGTTTGCCATTTTaGGTTGTCCGCACTCCTCTT +
Preference number: 4 (lower is better)
Translates to: SSIFPTCLPGTASILTVCLGLPF*VVRTPL
Trigger: AAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAG...GCAGACAGTAAGAATTGATGCTGTCCCAGGAAGACAAGTGGGGAAAATGCTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR CCA 90 bp CAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGTGGAGGCTGTACTGGTaGTTGCGGACGAACTCCTGG +
Preference number: 4 (lower is better)
Translates to: QTFVFRFYGTRRDNIFSGWRLYW*LRTNSW
Trigger: CCAGGAGTTCGTCCGCAACCACCAGTACAGCCTCCA...CCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp GAACAAGTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTTGGGCCAGCAGCTCATaGAGTGTCAGGATGTACCTG +
Preference number: 4 (lower is better)
Translates to: EQVQRHATIIYNNRKAGVWASSS*SVRMYL
Trigger: CAGGTACATCCTGACACTCCATGAGCTGCTGGCCCA...AACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTACTTGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp AGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCATGGCGTTGTGGCTGCTaGAAAACAAGAGTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: RGTRRLYTIIVKQVFTEAWRCGC*KTRVPG
Trigger: CCCTGGAACTCTTGTTTTCCAGCAGCCACAACGCCA...TGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp AGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCATCTCCTCTGGAGTCTTaGGTAAGCTGCTGGCCATAC +
Preference number: 4 (lower is better)
Translates to: RGTRRLYTIIVKQVFTEASPLES*VSCWPY
Trigger: GTATGGCCAGCAGCTTACCCAAGACTCCAGAGGAGA...TGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp CAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGCAGAGCTATGCTTCCTaGAGGCTGAGAGCTCCCCAG +
Preference number: 4 (lower is better)
Translates to: QTFVFRFYGTRRDNIFSGQSYAS*RLRAPQ
Trigger: CTGGGGAGCTCTCAGCCTCCAGGAAGCATAGCTCTG...CCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp GTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGATCAGCACACGATTGGTaGCAGCTCTGCGGATCACAA +
Preference number: 4 (lower is better)
Translates to: VQRHATIIYNNRKAGVHRSAHDW*QLCGSQ
Trigger: TTGTGATCCGCAGAGCTGCCACCAATCGTGTGCTGA...TCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
3UTR CAA 72 bp GAGCCTAAGCTTATATCAGGCTCTGAGCCACTGGTATaGCTGTCTGCTTCAATCCTTTTCCTCTTTCAAGGG +
Preference number: 4 (lower is better)
Translates to: EPKLISGSEPLV*LSASILFLFQG
Trigger: CCCTTGAAAGAGGAAAAGGATTGAAGCAGACAGCAATACCAGTGGCTCAGAGCCTGATATAAGCTTAGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR GCA 90 bp GGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTCAATGGCCAGGTTTTTaGGGATGTTCTCGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: GTRRLYTIIVKQVFTEAAQWPGF*GCSRFH
Trigger: GTGAAACCGAGAACATCCGCAAAAACCTGGCCATTG...AGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp CACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTGGCCAGATCACGACACGTaGTCATCAGGATTCCATTGT +
Preference number: 4 (lower is better)
Translates to: HATIIYNNRKAGVHRSSWPDHDT*SSGFHC
Trigger: ACAATGGAATCCTGATGACCACGTGTCGTGATCTGG...CCAGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
3UTR CAA 72 bp GTATCGTGGGCATCATTTCCTACACAAAATTTGGTTTaGTGTTCTCAAGGACCTGGGGATCCATCCATCCAG +
Preference number: 4 (lower is better)
Translates to: VSWASFPTQNLV*CSQGPGDPSIQ
Trigger: CTGGATGGATGGATCCCCAGGTCCTTGAGAACACAAAACCAAATTTTGTGTAGGAAATGATGCCCACGATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR TCA 90 bp AGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAGGAACATTGGGTAGGTaGGGAAGGTCTCCAGTGTGC +
Preference number: 4 (lower is better)
Translates to: RHLYFGFTGQEEIIYSRGGTLGR*GRSPVC
Trigger: GCACACTGGAGACCTTCCTCACCTACCCAATGTTCC...TCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR TCA 90 bp GTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGACCTCCGTCATCAGTATaGCTTCTTCCAGCATGCTAT +
Preference number: 4 (lower is better)
Translates to: VQRHATIIYNNRKAGVHRPPSSV*LLPACY
Trigger: ATAGCATGCTGGAAGAAGTCATACTGATGACGGAGG...TCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GAGTGCAGACATCTATATTTTGAGTGCAGACATTTGTATTTCGGTTTTACGGGAACAAGGATGTGTAGCTaGTGGACGTACTCAGCCTCG +
Preference number: 4 (lower is better)
Translates to: ECRHLYFECRHLYFGFTGTRMCS*WTYSAS
Trigger: CGAGGCTGAGTACGTCCAGCAGCTACACATCCTTGT...TCCCGTAAAACCGAAATACAAATGTCTGCACTCAAAATATAGATGTCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp AGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCATTGTCTTCATCACTGTaGTTCTGGTCATCCTCGGAC +
Preference number: 4 (lower is better)
Translates to: RGTRRLYTIIVKQVFTEALSSSL*FWSSSD
Trigger: GTCCGAGGATGACCAGAACCACAGTGATGAAGACAA...TGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp GTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGATCTCCAGGGCTGGGTaGTTTTCGAAGGGCTCAGTC +
Preference number: 4 (lower is better)
Translates to: VQTFVFRFYGTRRDNIFSISRAG*FSKGSV
Trigger: GACTGAGCCCTTCGAAAACCACCCAGCCCTGGAGAT...CGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GAGTGCAGACATCTATATTTTGAGTGCAGACATTTGTATTTCGGTTTTACGGGAGCTTGGCGTTGTGGCTaGTGGAAAACAAGAGTTCCA +
Preference number: 4 (lower is better)
Translates to: ECRHLYFECRHLYFGFTGAWRCG*WKTRVP
Trigger: TGGAACTCTTGTTTTCCAGCAGCCACAACGCCAAGC...TCCCGTAAAACCGAAATACAAATGTCTGCACTCAAAATATAGATGTCTGCACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp TGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGATGATGTTGGCTGCTaGCTTTCGCTCTTGGGTCAG +
Preference number: 4 (lower is better)
Translates to: CRHLYFGFTGQEEIIYSRDDVGC*LSLLGQ
Trigger: CTGACCCAAGAGCGAAAGGCAGCAGCCAACATCATC...CCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp GAACAAGTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCTTGGTTTGCCATTTTaGGTTGTCCGCACTCCTCTT +
Preference number: 4 (lower is better)
Translates to: EQVQRHATIIYNNRKAGVLGLPF*VVRTPL
Trigger: AAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAG...AACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTACTTGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp TATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCAACTCCAAGGTCTTCTaGCTGTCATTGGAGAAGTTC +
Preference number: 4 (lower is better)
Translates to: YFGFTGQEEIIYSRGSTRNSKVF*LSLEKF
Trigger: GAACTTCTCCAATGACAGCCAGAAGACCTTGGAGTT...GCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp TGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGCAGGTGTTCTATCTCTaGTCCGGCTCCTTTGGCTTC +
Preference number: 4 (lower is better)
Translates to: CRHLYFGFTGQEEIIYSRQVFYL*SGSFGF
Trigger: GAAGCCAAAGGAGCCGGACCAGAGATAGAACACCTG...CCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp GGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTTTGTCGATATTTCTCTaGTCAGAGGAAAAGCCTGTG +
Preference number: 4 (lower is better)
Translates to: GTRRLYTIIVKQVFTEAALSIFL*SEEKPV
Trigger: CACAGGCTTTTCCTCTGACCAGAGAAATATCGACAA...AGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp AGACATCTATATTTTGAGTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGGCTTGGCCTCGTACTaGTTGAGGAGCTTGTCAAAG +
Preference number: 4 (lower is better)
Translates to: RHLYFECRHLYFGFTGQEGLASY*LRSLSK
Trigger: CTTTGACAAGCTCCTCAAGCAGTACGAGGCCAAGCC...TTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCACTCAAAATATAGATGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp ACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTGGGGTGCAGATAATGAGATaGTTGGAGAATAGGAAACAC +
Preference number: 4 (lower is better)
Translates to: TRRLYTIIVKQVFTEAAGVQIMR*LENRKH
Trigger: GTGTTTCCTATTCTCCAAGCATCTCATTATCTGCAC...CCCAGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp CAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCGGATCTGAAGCACTTTaGAAGAATTCATGGTTTTGC +
Preference number: 4 (lower is better)
Translates to: QRHATIIYNNRKAGVHRSGSEAL*KNSWFC
Trigger: GCAAAACCATGAATTCTTGCAAAGTGCTTCAGATCC...GCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp AGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAGAAGGTCTGGGTCATaGATGACCTCCTCCAGGAAA +
Preference number: 4 (lower is better)
Translates to: RHLYFGFTGQEEIIYSRGRRSGS*MTSSRK
Trigger: TTTCCTGGAGGAGGTCATGCATGACCCAGACCTTCT...TCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp CAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGGCAGGGCAAACCACTTaGTTTGCCATTTTGGGTTGT +
Preference number: 4 (lower is better)
Translates to: QTFVFRFYGTRRDNIFSGAGQTT*FAILGC
Trigger: ACAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGC...CCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp AAGTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAACAGTTCCTCTAGTTTaGATTTGGCATAGTCCAGGC +
Preference number: 4 (lower is better)
Translates to: KYRGTRRLYTIIVKQVFTTVPLV*IWHSPG
Trigger: GCCTGGACTATGCCAAATCCAAACTAGAGGAACTGT...TGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp AAGTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAGAATAGGAAACACTaGCGCTCACCCTCTTTCTTA +
Preference number: 4 (lower is better)
Translates to: KYRGTRRLYTIIVKQVFTENRKH*RSPSFL
Trigger: TAAGAAAGAGGGTGAGCGCCAGTGTTTCCTATTCTC...TGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp GTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGTGCCGAAGGGAGATATaGGTGAGTGTATGTTGGCGT +
Preference number: 4 (lower is better)
Translates to: VQTFVFRFYGTRRDNIFSCRREI*VSVCWR
Trigger: ACGCCAACATACACTCACCCATATCTCCCTTCGGCA...CGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp AGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGATGCCAGTGTCCAGTGTaGTTTTGCCGAAGGGAGATA +
Preference number: 4 (lower is better)
Translates to: RHLYFGFTGQEEIIYSRGCQCPV*FCRREI
Trigger: TATCTCCCTTCGGCAAAACCACACTGGACACTGGCA...TCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp TGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGCTTCTCTGGAATCGTaGCAGGCACATCAATCTCCT +
Preference number: 4 (lower is better)
Translates to: CRHLYFGFTGQEEIIYSRASLES*QAHQSP
Trigger: AGGAGATTGATGTGCCTGCCACGATTCCAGAGAAGC...CCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR TCA 90 bp CACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTGGAATTCATGGTTTTGCTaGAGCGAATGTCAACATCAT +
Preference number: 4 (lower is better)
Translates to: HATIIYNNRKAGVHRSSWNSWFC*SECQHH
Trigger: ATGATGTTGACATTCGCTTCAGCAAAACCATGAATT...CCAGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR TCA 90 bp GTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGAAAGGCAGAAGTAGCTaGGAGAGTGCTGCGGTTATT +
Preference number: 4 (lower is better)
Translates to: VQTFVFRFYGTRRDNIFSKGRSS*ESAAVI
Trigger: AATAACCGCAGCACTCTCTCAGCTACTTCTGCCTTT...CGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp AGACATCTATATTTTGAGTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAATGGCCATACAGAGCTTaGCAGTGTCCAGTGTGGTTT +
Preference number: 4 (lower is better)
Translates to: RHLYFECRHLYFGFTGQEWPYRA*QCPVWF
Trigger: AAACCACACTGGACACTGGCAAGCTCTGTATGGCCA...TTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCACTCAAAATATAGATGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp GAAGGTCAAACACTTTATAGCATTAATATAGATGAGCTTTTCTGTGGAAGCCCACTTGGTTTGCCATTTTaGGTTGTCCGCACTCCTCTT +
Preference number: 4 (lower is better)
Translates to: EGQTLYSINIDELFCGSPLGLPF*VVRTPL
Trigger: AAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAG...TGGGCTTCCACAGAAAAGCTCATCTATATTAATGCTATAAAGTGTTTGACCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS-3UTR TCA 90 bp GTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGCCCCGAAGGAAGCTCTaGACCTTCTTAATTTTCTTG +
Preference number: 4 (lower is better)
Translates to: VQTFVFRFYGTRRDNIFSPRRKL*TFLIFL
Trigger: CAAGAAAATTAAGAAGGTTCAGAGCTTCCTTCGGGG...CGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp GTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGCAGAACCGGCTTTGTTaGTGGATTGGATACGATCAT +
Preference number: 4 (lower is better)
Translates to: VQTFVFRFYGTRRDNIFSQNRLC*WIGYDH
Trigger: ATGATCGTATCCAATCCAGCAACAAAGCCGGTTCTG...CGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp TGTAGCGAAGGTCAAACACTTTATAGCATTAATATAGATGAGCTTTTCTGTGGAGCAGGGCAAACCACTTaGTTTGCCATTTTGGGTTGT +
Preference number: 4 (lower is better)
Translates to: CSEGQTLYSINIDELFCGAGQTT*FAILGC
Trigger: ACAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGC...TCCACAGAAAAGCTCATCTATATTAATGCTATAAAGTGTTTGACCTTCGCTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS-3UTR CCA 90 bp AGACATCTATATTTTGAGTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAACCTCTAGTTTGGATTTaGCATAGTCCAGGCTGTTGC +
Preference number: 4 (lower is better)
Translates to: RHLYFECRHLYFGFTGQEPLVWI*HSPGCC
Trigger: GCAACAGCCTGGACTATGCCAAATCCAAACTAGAGG...TTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCACTCAAAATATAGATGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp GTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGAGGAAAAGCCTGTGTTaGCCAAAGACATCCTTCGAA +
Preference number: 4 (lower is better)
Translates to: VQTFVFRFYGTRRDNIFSRKSLC*PKTSFE
Trigger: TTCGAAGGATGTCTTTGGCCAACACAGGCTTTTCCT...CGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp GCTGAAGGGCATTTGGTGATAACTTGTAGCGAAGGTCAAACACTTTATAGCATTATGTTTTTGAGATCCTaGTTGGTTGTCTTCTCAGAA +
Preference number: 4 (lower is better)
Translates to: AEGHLVITCSEGQTLYSIMFLRS*LVVFSE
Trigger: TTCTGAGAAGACAACCAACCAGGATCTCAAAAACAT...AATGCTATAAAGTGTTTGACCTTCGCTACAAGTTATCACCAAATGCCCTTCAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS-3UTR TCA 90 bp TGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGTGGAGAAGTTCACTGTaGAGTAATGTTGCTGTTTCT +
Preference number: 4 (lower is better)
Translates to: CRHLYFGFTGQEEIIYSRWRSSL*SNVAVS
Trigger: AGAAACAGCAACATTACTTCACAGTGAACTTCTCCA...CCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR TCA 90 bp GAGTGCAGACATCTATATTTTGAGTGCAGACATTTGTATTTCGGTTTTACGGGAGTTTCGGATAATTTCTaGAGCAATGAAGTTACTGAC +
Preference number: 4 (lower is better)
Translates to: ECRHLYFECRHLYFGFTGVSDNF*SNEVTD
Trigger: GTCAGTAACTTCATTGCTTCAGAAATTATCCGAAAC...TCCCGTAAAACCGAAATACAAATGTCTGCACTCAAAATATAGATGTCTGCACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR GCA 90 bp AGACATCTATATTTTGAGTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAAGCAAAGATTTCGTCTaGTTAGAAACTTTGAGCCAT +
Preference number: 4 (lower is better)
Translates to: RHLYFECRHLYFGFTGQESKDFV*LETLSH
Trigger: ATGGCTCAAAGTTTCTAAGCAGACGAAATCTTTGCT...TTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCACTCAAAATATAGATGTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CCA 90 bp TGTAGCGAAGGTCAAACACTTTATAGCATTAATATAGATGAGCTTTTCTGTGGAATGTTTTTGAGATCCTaGTTGGTTGTCTTCTCAGAA +
Preference number: 4 (lower is better)
Translates to: CSEGQTLYSINIDELFCGMFLRS*LVVFSE
Trigger: TTCTGAGAAGACAACCAACCAGGATCTCAAAAACAT...TCCACAGAAAAGCTCATCTATATTAATGCTATAAAGTGTTTGACCTTCGCTACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS-3UTR CCA 90 bp AGACATCTATATTTTGAGTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAATCTCTCGGATAATATaGGAGATCATTCTCATCTTG +
Preference number: 4 (lower is better)
Translates to: RHLYFECRHLYFGFTGQEISRII*EIILIL
Trigger: CAAGATGAGAATGATCTCCCATATTATCCGAGAGAT...TTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCACTCAAAATATAGATGTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 90 bp GATGATGGGGATGTTGAGGGACAGCTTCCGACGGCGGCTGGGGGATaGCGTCCCGATGGCCAAGGGCGGTGGCGAGGAGAACTTGCGGCT +
Preference number: 5 (lower is better)
Translates to: DDGDVEGQLPTAAGG*RPDGQGRWRGELAA
Trigger: AGCCGCAAGTTCTCCTCGCCACCGCCCTTGGCCATCGGGACGTCATCCCCCAGCCGCCGTCGGAAGCTGTCCCTCAACATCCCCATCATC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 90 bp CGCACTCCTCTTGCTCAGGTAGCCTTTGCGCGTGCCGTCCTTCTGTaGCAGCAGTCCCAGGGTCACGACGTGGCCATCGTTAAGCCGGAT +
Preference number: 5 (lower is better)
Translates to: RTPLAQVAFARAVLL*QQSQGHDVAIVKPD
Trigger: ATCCGGCTTAACGATGGCCACGTCGTGACCCTGGGACTGCTGGCACAGAAGGACGGCACGCGCAAAGGCTACCTGAGCAAGAGGAGTGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034909.11
ENSMUST00000034912.6
ENSMUST00000189545.2
CDS TCA 90 bp TCTTGCGCATGCTGTCCGCGTGGGGAGACCGGATGTAGTCCTGGATaGTGTTCTTCCACTTTCGCCGGCACAGCCATCCCCGAAGGAAGC +
Preference number: 5 (lower is better)
Translates to: SCACCPRGETGCSPG*CSSTFAGTAIPEGS
Trigger: GCTTCCTTCGGGGATGGCTGTGCCGGCGAAAGTGGAAGAACATCATCCAGGACTACATCCGGTCTCCCCACGCGGACAGCATGCGCAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp TATGACGCTGTTTCTCGCCGGACTCCTTGGAGGAGGTCCCTCGCTTaGGGGAGGGCGCGCGTTTACAGATACTTCCCTCGAGCAGGTAGA +
Preference number: 5 (lower is better)
Translates to: YDAVSRRTPWRRSLA*GRARVYRYFPRAGR
Trigger: TCTACCTGCTCGAGGGAAGTATCTGTAAACGCGCGCCCTCCCCCAAGCGAGGGACCTCCTCCAAGGAGTCCGGCGAGAAACAGCGTCATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS CCA 90 bp GCAGCAGGATATCGAACAGGTCCGCCAGCACCAGGGTGGGCCAGCTaGAGATACGGGCCTTCAGGCCTTGGTAGAAGATCTGATGCAGGA +
Preference number: 5 (lower is better)
Translates to: AAGYRTGPPAPGWAS*RYGPSGLGRRSDAG
Trigger: TCCTGCATCAGATCTTCTACCAAGGCCTGAAGGCCCGTATCTCCAGCTGGCCCACCCTGGTGCTGGCGGACCTGTTCGATATCCTGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 90 bp TTTGCCATTTTGGGTTGTCCGCACTCCTCTTGCTCAGGTAGCCTTTaGGCGTGCCGTCCTTCTGTGCCAGCAGTCCCAGGGTCACGACGT +
Preference number: 5 (lower is better)
Translates to: FAILGCPHSSCSGSL*ACRPSVPAVPGSRR
Trigger: ACGTCGTGACCCTGGGACTGCTGGCACAGAAGGACGGCACGCGCAAAGGCTACCTGAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034909.11
ENSMUST00000034912.6
ENSMUST00000189545.2
CDS GCA 90 bp ACCTCCGTCTTCAGGCGCTCGATCTCAACCTCACCGTCCTCAAGCTaGTGGCGCAGCTGCTTAGCCACAGTCTTCTCTGTCTCCACTACC +
Preference number: 5 (lower is better)
Translates to: TSVFRRSISTSPSSS*WRSCLATVFSVSTT
Trigger: GGTAGTGGAGACAGAGAAGACTGTGGCTAAGCAGCTGCGCCAGCAGCTTGAGGACGGTGAGGTTGAGATCGAGCGCCTGAAGACGGAGGT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp AATGTTGCTGTTTCTCGCCGGACTCCTTGGAGGAGGTCCCTCGCTTaGGGGAGGGCGCGCGTTTACAGATACTTCCCTCGAGCAGGTAGA +
Preference number: 5 (lower is better)
Translates to: NVAVSRRTPWRRSLA*GRARVYRYFPRAGR
Trigger: TCTACCTGCTCGAGGGAAGTATCTGTAAACGCGCGCCCTCCCCCAAGCGAGGGACCTCCTCCAAGGAGTCCGGCGAGAAACAGCAACATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp TCCGTCTTCAGGCGCTCGATCTCAACCTCACCGTCCTCAAGCTGCTaGCGCAGCTGCTTAGCCACAGTCTTCTCTGTCTCCACTACCTGC +
Preference number: 5 (lower is better)
Translates to: SVFRRSISTSPSSSC*RSCLATVFSVSTTC
Trigger: GCAGGTAGTGGAGACAGAGAAGACTGTGGCTAAGCAGCTGCGCCAGCAGCTTGAGGACGGTGAGGTTGAGATCGAGCGCCTGAAGACGGA
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp ATGCGCAGTGGGCGCAGGAAGTTGTTGACAAGGATGTGTAGCTGCTaGACGTACTCAGCCTCGGCCTCCAGCATGCTGAACACCACCTGG +
Preference number: 5 (lower is better)
Translates to: MRSGRRKLLTRMCSC*TYSASASSMLNTTW
Trigger: CCAGGTGGTGTTCAGCATGCTGGAGGCCGAGGCTGAGTACGTCCAGCAGCTACACATCCTTGTCAACAACTTCCTGCGCCCACTGCGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 90 bp GGGCAAACCACTTGGTTTGCCATTTTGGGTTGTCCGCACTCCTCTTaGTCAGGTAGCCTTTGCGCGTGCCGTCCTTCTGTGCCAGCAGTC +
Preference number: 5 (lower is better)
Translates to: GQTTWFAILGCPHSS*SGSLCACRPSVPAV
Trigger: GACTGCTGGCACAGAAGGACGGCACGCGCAAAGGCTACCTGAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAGTGGTTTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034909.11
ENSMUST00000034912.6
ENSMUST00000189545.2
CDS CCA 90 bp TACAGATACTTCCCTCGAGCAGGTAGAGCCCCGAGGGCCGAGGGCTaGAGTCGCTTTCGAAGTAGAAAAGCAGGTTCTGGAGCAGGGCAA +
Preference number: 5 (lower is better)
Translates to: YRYFPRAGRAPRAEG*SRFRSRKAGSGAGQ
Trigger: TTGCCCTGCTCCAGAACCTGCTTTTCTACTTCGAAAGCGACTCCAGCCCTCGGCCCTCGGGGCTCTACCTGCTCGAGGGAAGTATCTGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034909.11
ENSMUST00000034912.6
ENSMUST00000189545.2
CDS CCA 90 bp CATTGGGTAGGTGAGGAAGGTCTCCAGTGTGCGCTCCTCGCAGTCTaGCTTGGCCTCGTACTGCTTGAGGAGCTTGTCAAAGTCCCGGTT +
Preference number: 5 (lower is better)
Translates to: HWVGEEGLQCALLAV*LGLVLLEELVKVPV
Trigger: AACCGGGACTTTGACAAGCTCCTCAAGCAGTACGAGGCCAAGCCAGACTGCGAGGAGCGCACACTGGAGACCTTCCTCACCTACCCAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp GACAAGGTGATCCAGCAGGGTCAGCTGCTCTGCTATCTCCAGGGCTaGGTGGTTTTCGAAGGGCTCAGTCTTCACACCCTCCGTCATCAG +
Preference number: 5 (lower is better)
Translates to: DKVIQQGQLLCYLQG*VVFEGLSLHTLRHQ
Trigger: CTGATGACGGAGGGTGTGAAGACTGAGCCCTTCGAAAACCACCCAGCCCTGGAGATAGCAGAGCAGCTGACCCTGCTGGATCACCTTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp CTGACTGATGTGGGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGGAGAACGTTTGCCATTTTGGGTaGTCCGCACTCCTCTTGCTC +
Preference number: 5 (lower is better)
Translates to: LTDVGVWPPGLLRMREENVCHFG*SALLLL
Trigger: GAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAAC...GTTCTCCTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS-3UTR CAA 90 bp GCTTTCCCATCCATGTCTGTGGAGCTGGAGCAACGGTACCTGGGGAGCACCGTGGGCAAACCACTTGGTTaGCCATTTTGGGTTGTCCGC +
Preference number: 5 (lower is better)
Translates to: AFPSMSVELEQRYLGSTVGKPLG*PFWVVR
Trigger: GCGGACAACCCAAAATGGCAAACCAAGTGGTTTGCC...CACGGTGCTCCCCAGGTACCGTTGCTCCAGCTCCACAGACATGGATGGGAAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS TCA 90 bp TCTCCAGTGTGCGCTCCTCGCAGTCTGGCTTGGCCTCGTACTGCTTaGGGAGCTTGTCAAAGTCCCGGTTTTGCTTGCAGTGAGCAAGGA +
Preference number: 5 (lower is better)
Translates to: SPVCAPRSLAWPRTA*GACQSPGFACSEQG
Trigger: TCCTTGCTCACTGCAAGCAAAACCGGGACTTTGACAAGCTCCTCAAGCAGTACGAGGCCAAGCCAGACTGCGAGGAGCGCACACTGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp CTGACTGATGTGGGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGGAGAACACTTGGTTTGCCATTTaGGGTTGTCCGCACTCCTCT +
Preference number: 5 (lower is better)
Translates to: LTDVGVWPPGLLRMREENTWFAI*GCPHSS
Trigger: AGAGGAGTGCGGACAACCCAAAATGGCAAACCAAGT...GTTCTCCTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS-3UTR CAA 90 bp CTGACTGATGTGGGGGTATGGCCCCCAGGGCTTCTCCGAATGAGGGAGGAGAACAGCAGGGCAAACCACTaGGTTTGCCATTTTGGGTTG +
Preference number: 5 (lower is better)
Translates to: LTDVGVWPPGLLRMREENSRANH*VCHFGL
Trigger: CAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGCT...GTTCTCCTCCCTCATTCGGAGAAGCCCTGGGGGCCATACCCCCACATCAGTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS CCA 90 bp GAAAAGCAGGTTCTGGAGCAGGGCAAACCACTTGGTTTGCCATTTTaGGTTGTCCGCACTCCTCTTGCTCAGGTAGCCTTTGCGCGTGCC +
Preference number: 5 (lower is better)
Translates to: EKQVLEQGKPLGLPF*VVRTPLAQVAFARA
Trigger: GGCACGCGCAAAGGCTACCTGAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGCTCCAGAACCTGCTTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034909.11
ENSMUST00000034912.6
ENSMUST00000189545.2
CDS CCA 90 bp GAGCCTCTGGTGCAGATAATGAGATGCTTGGAGAATAGGAAACACTaGCGCTCACCCTCTTTCTTAGTGGACAGAGACCCCAGGCGGCCC +
Preference number: 5 (lower is better)
Translates to: EPLVQIMRCLENRKH*RSPSFLVDRDPRRP
Trigger: GGGCCGCCTGGGGTCTCTGTCCACTAAGAAAGAGGGTGAGCGCCAGTGTTTCCTATTCTCCAAGCATCTCATTATCTGCACCAGAGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp TCGTGGCAGGCACATCAATCTCCTCTGGAGTCTTGGGTAAGCTGCTaGCCATACAGAGCTTGCCAGTGTCCAGTGTGGTTTTGCCGAAGG +
Preference number: 5 (lower is better)
Translates to: SWQAHQSPLESWVSC*PYRACQCPVWFCRR
Trigger: CCTTCGGCAAAACCACACTGGACACTGGCAAGCTCTGTATGGCCAGCAGCTTACCCAAGACTCCAGAGGAGATTGATGTGCCTGCCACGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp GCTTCTCTGGAATCGTGGCAGGCACATCAATCTCCTCTGGAGTCTTaGGTAAGCTGCTGGCCATACAGAGCTTGCCAGTGTCCAGTGTGG +
Preference number: 5 (lower is better)
Translates to: ASLESWQAHQSPLES*VSCWPYRACQCPVW
Trigger: CCACACTGGACACTGGCAAGCTCTGTATGGCCAGCAGCTTACCCAAGACTCCAGAGGAGATTGATGTGCCTGCCACGATTCCAGAGAAGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp GGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTGGTGGCGAGGAGAACTaGCGGCTGGCGCGAGGGGAC +
Preference number: 5 (lower is better)
Translates to: GTRRLYTIIVKQVFTEAAGGEEN*RLARGD
Trigger: GTCCCCTCGCGCCAGCCGCAAGTTCTCCTCGCCACC...AGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 90 bp GCCTTCATTGGCTCCTGCAGTCGCTATGGCAAAGGCAGAAGTAGCTaGGAGAGTGCTGCGGTTATTGTCCACCAGATCACGACACGTGGT +
Preference number: 5 (lower is better)
Translates to: AFIGSCSRYGKGRSS*ESAAVIVHQITTRG
Trigger: ACCACGTGTCGTGATCTGGTGGACAATAACCGCAGCACTCTCTCAGCTACTTCTGCCTTTGCCATAGCGACTGCAGGAGCCAATGAAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 90 bp TGGTTCTGGTCATCCTCGGACTCTTCTTTCAGGACATCAGAGCTATaGTTCCTGGAGGCTGAGAGCTCCCCAGGCTTCTCTGGAATCGTG +
Preference number: 5 (lower is better)
Translates to: WFWSSSDSSFRTSEL*FLEAESSPGFSGIV
Trigger: CACGATTCCAGAGAAGCCTGGGGAGCTCTCAGCCTCCAGGAAGCATAGCTCTGATGTCCTGAAAGAAGAGTCCGAGGATGACCAGAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp GTCCTTTGGCTCCACCCCGATCTTAAACTCCAGGTGTTCTATCTCTaGTCCGGCTCCTTTGGCTTCGTCGTCCAGGTTTTCGGGTTCATC +
Preference number: 5 (lower is better)
Translates to: VLWLHPDLKLQVFYL*SGSFGFVVQVFGFI
Trigger: GATGAACCCGAAAACCTGGACGACGAAGCCAAAGGAGCCGGACCAGAGATAGAACACCTGGAGTTTAAGATCGGGGTGGAGCCAAAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp ATAAGACAGTTAAAGCAGGCGTCTCTGACTGATGTGGGGGTATGGCCCCCAGGGGGCAAACCACTTGGTTaGCCATTTTGGGTTGTCCGC +
Preference number: 5 (lower is better)
Translates to: IRQLKQASLTDVGVWPPGGKPLG*PFWVVR
Trigger: GCGGACAACCCAAAATGGCAAACCAAGTGGTTTGCC...CCCTGGGGGCCATACCCCCACATCAGTCAGAGACGCCTGCTTTAACTGTCTTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS GCA 90 bp AGGAATACTCTTGAAGACAAGGTGATCCAGCAGGGTCAGCTGCTCTaGTATCTCCAGGGCTGGGTGGTTTTCGAAGGGCTCAGTCTTCAC +
Preference number: 5 (lower is better)
Translates to: RNTLEDKVIQQGQLL*YLQGWVVFEGLSLH
Trigger: GTGAAGACTGAGCCCTTCGAAAACCACCCAGCCCTGGAGATAGCAGAGCAGCTGACCCTGCTGGATCACCTTGTCTTCAAGAGTATTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 90 bp AAAGCCTGTGTTGGCCAAAGACATCCTTCGAAACACCTCCTTGTTTaGGGGGCCTTCATTGGCTCCTGCAGTCGCTATGGCAAAGGCAGA +
Preference number: 5 (lower is better)
Translates to: KACVGQRHPSKHLLV*GAFIGSCSRYGKGR
Trigger: TCTGCCTTTGCCATAGCGACTGCAGGAGCCAATGAAGGCCCCTCAAACAAGGAGGTGTTTCGAAGGATGTCTTTGGCCAACACAGGCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp AAACAGATCACCCTGTATTTGAGCGTATCGTCGGTATCAAAGTCCTaGGTGTGCTTGGTGACCCAGTGGCGGAGCACATTCAGCACACGA +
Preference number: 5 (lower is better)
Translates to: KQITLYLSVSSVSKS*VCLVTQWRSTFSTR
Trigger: TCGTGTGCTGAATGTGCTCCGCCACTGGGTCACCAAGCACACCCAGGACTTTGATACCGACGATACGCTCAAATACAGGGTGATCTGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCCAGTTCCAGCGCCTaGCCGCCTGTGATGATGGGG +
Preference number: 5 (lower is better)
Translates to: RGTRRLYTIIVKQVFTEAASSSA*PPVMMG
Trigger: CCCCATCATCACAGGCGGCAAGGCGCTGGAACTGGC...TGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 90 bp TCCTCAACTCCAAGGTCTTCTGGCTGTCATTGGAGAAGTTCACTGTaGAGTAATGTTGCTGTTTCTCGCCGGACTCCTTGGAGGAGGTCC +
Preference number: 5 (lower is better)
Translates to: SSTPRSSGCHWRSSL*SNVAVSRRTPWRRS
Trigger: GGACCTCCTCCAAGGAGTCCGGCGAGAAACAGCAACATTACTTCACAGTGAACTTCTCCAATGACAGCCAGAAGACCTTGGAGTTGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp CAGCGTTGTCAAGTCTTCTGGCTTTCCCATCCATGTCTGTGGAGCTaGAGCAACGGTACCGATCTCTGTCCTAATTATGGAGAAGGAGAC +
Preference number: 5 (lower is better)
Translates to: QRCQVFWLSHPCLWS*SNGTDLCPNYGEGD
Trigger: GTCTCCTTCTCCATAATTAGGACAGAGATCGGTACCGTTGCTCCAGCTCCACAGACATGGATGGGAAAGCCAGAAGACTTGACAACGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034909.11
CDS CCA 90 bp GTCACGCAGCGTTGTCAAGTCTTCTGGCTTTCCCATCCATGTCTGTaGAGCTGGAGCAACGGTACCGATCTCTGTCCTAATTATGGAGAA +
Preference number: 5 (lower is better)
Translates to: VTQRCQVFWLSHPCL*SWSNGTDLCPNYGE
Trigger: TTCTCCATAATTAGGACAGAGATCGGTACCGTTGCTCCAGCTCCACAGACATGGATGGGAAAGCCAGAAGACTTGACAACGCTGCGTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034909.11
CDS-3UTR CAA 90 bp CTTGCCCTAGGTAGATACTGTGTGGAGCAAAGCTCTGTGCTTGCTTGGAGTGTGAGCAGGGCAAACCACTaGGTTTGCCATTTTGGGTTG +
Preference number: 5 (lower is better)
Translates to: LALGRYCVEQSSVLAWSVSRANH*VCHFGL
Trigger: CAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGCT...CACACTCCAAGCAAGCACAGAGCTTTGCTCCACACAGTATCTACCTAGGGCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189545.2
CDS-3UTR CAA 90 bp GGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGTACTCTGGTCCGGCTCCTTaGGCTTCGTCGTCCAGGTTT +
Preference number: 5 (lower is better)
Translates to: GTRRDNIFSGKHTLENKYSGPAP*ASSSRF
Trigger: AAACCTGGACGACGAAGCCAAAGGAGCCGGACCAGA...GTACTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp TACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGTGCTGCCTTTCGCTCTaGGGTCAGAAGGTCTGGGTC +
Preference number: 5 (lower is better)
Translates to: YGTRRDNIFSGKHTLENKCCLSL*GQKVWV
Trigger: GACCCAGACCTTCTGACCCAAGAGCGAAAGGCAGCA...CTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp CGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGGTTTGCCATTTTGGGTaGTCCGCACTCCTCTTGCTC +
Preference number: 5 (lower is better)
Translates to: RFYGTRRDNIFSGKHTLEVCHFG*SALLLL
Trigger: GAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAAC...CTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp GGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGTACAAAGATGGCGCTGCGGTaGATGGAGGAGGTGATCTCC +
Preference number: 5 (lower is better)
Translates to: GQEEIIYSRGSTRWRTSTKMALR*MEEVIS
Trigger: GGAGATCACCTCCTCCATCAACCGCAGCGCCATCTT...TGTACTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp TTGGTGGCAGCTCTGCGGATCACAAACTCCTTGTCGATATTTCTCTaGTCAGAGGAAAAGCCTGTGTTGGCCAAAGACATCCTTCGAAAC +
Preference number: 5 (lower is better)
Translates to: LVAALRITNSLSIFL*SEEKPVLAKDILRN
Trigger: GTTTCGAAGGATGTCTTTGGCCAACACAGGCTTTTCCTCTGACCAGAGAAATATCGACAAGGAGTTTGTGATCCGCAGAGCTGCCACCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGTGATGATGGGGATGTaGAGGGACAGCTTCCGACGG +
Preference number: 5 (lower is better)
Translates to: RGTRRLYTIIVKQVFTEAVMMGM*RDSFRR
Trigger: CCGTCGGAAGCTGTCCCTCAACATCCCCATCATCAC...TGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp CACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTGGCTGGCCATACAGAGCTaGCCAGTGTCCAGTGTGGTT +
Preference number: 5 (lower is better)
Translates to: HATIIYNNRKAGVHRSSWLAIQS*PVSSVV
Trigger: AACCACACTGGACACTGGCAAGCTCTGTATGGCCAG...CCAGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp CAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCCTCATCTTGGAGAAGTaGACCAGGCCGTCCTCTGTG +
Preference number: 5 (lower is better)
Translates to: QRHATIIYNNRKAGVHRSLILEK*TRPSSV
Trigger: CACAGAGGACGGCCTGGTCAACTTCTCCAAGATGAG...GCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp CAAACTCCTTGTCGATATTTCTCTGGTCAGAGGAAAAGCCTGTGTTaGCCAAAGACATCCTTCGAAACACCTCCTTGTTTGAGGGGCCTT +
Preference number: 5 (lower is better)
Translates to: QTPCRYFSGQRKSLC*PKTSFETPPCLRGL
Trigger: AAGGCCCCTCAAACAAGGAGGTGTTTCGAAGGATGTCTTTGGCCAACACAGGCTTTTCCTCTGACCAGAGAAATATCGACAAGGAGTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp CACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTGGGGCAAACCACTTGGTTaGCCATTTTGGGTTGTCCGC +
Preference number: 5 (lower is better)
Translates to: HATIIYNNRKAGVHRSSWGKPLG*PFWVVR
Trigger: GCGGACAACCCAAAATGGCAAACCAAGTGGTTTGCC...CCAGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGGGCGCAGGAAGTTGTaGACAAGGATGTGTAGCTGC +
Preference number: 5 (lower is better)
Translates to: RGTRRLYTIIVKQVFTEAGRRKL*TRMCSC
Trigger: GCAGCTACACATCCTTGTCAACAACTTCCTGCGCCC...TGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp CAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCTTGGCCTCGTACTGCTaGAGGAGCTTGTCAAAGTCC +
Preference number: 5 (lower is better)
Translates to: QRHATIIYNNRKAGVHRSLASYC*RSLSKS
Trigger: GGACTTTGACAAGCTCCTCAAGCAGTACGAGGCCAA...GCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp CAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGTCCTCGCAGTCTGGCTaGGCCTCGTACTGCTTGAGG +
Preference number: 5 (lower is better)
Translates to: QTFVFRFYGTRRDNIFSGSSQSG*ASYCLR
Trigger: CCTCAAGCAGTACGAGGCCAAGCCAGACTGCGAGGA...CCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp GGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTATCTCCTCTGGAGTCTaGGGTAAGCTGCTGGCCATA +
Preference number: 5 (lower is better)
Translates to: GTRRLYTIIVKQVFTEAAISSGV*GKLLAI
Trigger: TATGGCCAGCAGCTTACCCAAGACTCCAGAGGAGAT...AGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAAGTCCTGGGTGTGCTaGGTGACCCAGTGGCGGAGC +
Preference number: 5 (lower is better)
Translates to: RHLYFGFTGQEEIIYSRGKSWVC*VTQWRS
Trigger: GCTCCGCCACTGGGTCACCAAGCACACCCAGGACTT...TCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp GGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTGGAGAACAAGTACAACTTGGTTTGCCATTTaGGGTTGTCCGCACTCCTCT +
Preference number: 5 (lower is better)
Translates to: GQEEIIYSRGSTRWRTSTTWFAI*GCPHSS
Trigger: AGAGGAGTGCGGACAACCCAAAATGGCAAACCAAGT...TGTACTTGTTCTCCAGCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp GGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAGCTAGCAGGGCAAACCACTaGGTTTGCCATTTTGGGTTG +
Preference number: 5 (lower is better)
Translates to: GTRRLYTIIVKQVFTEAASRANH*VCHFGL
Trigger: CAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGCT...AGCTGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AGACATCTATATTTTGAGTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAACCACCTGGTTCCTCTaGCGCATGCTGTCCGCGTGG +
Preference number: 5 (lower is better)
Translates to: RHLYFECRHLYFGFTGQETTWFL*RMLSAW
Trigger: CCACGCGGACAGCATGCGCAAGAGGAACCAGGTGGT...TTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCACTCAAAATATAGATGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAAGTGGGCGCAGGAAGTaGTTGACAAGGATGTGTAGC +
Preference number: 5 (lower is better)
Translates to: RGTRRLYTIIVKQVFTEASGRRK*LTRMCS
Trigger: GCTACACATCCTTGTCAACAACTTCCTGCGCCCACT...TGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 90 bp GATGGCGCTTGCCCTTGCGCTGATGTCCTCGTTTCGGATAATTTCTaGAGCAATGAAGTTACTGACATGGTTGAAGTGTTTGGTGGTTTT +
Preference number: 5 (lower is better)
Translates to: DGACPCADVLVSDNF*SNEVTDMVEVFGGF
Trigger: AAAACCACCAAACACTTCAACCATGTCAGTAACTTCATTGCTTCAGAAATTATCCGAAACGAGGACATCAGCGCAAGGGCAAGCGCCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp GATTTAACTGGTGACACTTCTGTGTTGTCTTCATCACTGTGGTTCTaGTCATCCTCGGACTCTTCTTTCAGGACATCAGAGCTATGCTTC +
Preference number: 5 (lower is better)
Translates to: DLTGDTSVLSSSLWF*SSSDSSFRTSELCF
Trigger: GAAGCATAGCTCTGATGTCCTGAAAGAAGAGTCCGAGGATGACCAGAACCACAGTGATGAAGACAACACAGAAGTGTCACCAGTTAAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp GCTGAAGGGCATTTGGTGATAACTTGTAGCGAAGGTCAAACACTTTATAGCATTGTTTGCCATTTTGGGTaGTCCGCACTCCTCTTGCTC +
Preference number: 5 (lower is better)
Translates to: AEGHLVITCSEGQTLYSIVCHFG*SALLLL
Trigger: GAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAAC...AATGCTATAAAGTGTTTGACCTTCGCTACAAGTTATCACCAAATGCCCTTCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS-3UTR CAA 90 bp GAGTGCAGACATCTATATTTTGAGTGCAGACATTTGTATTTCGGTTTTACGGGAACGGGCCTTCAGGCCTaGGTAGAAGATCTGATGCAG +
Preference number: 5 (lower is better)
Translates to: ECRHLYFECRHLYFGFTGTGLQA*VEDLMQ
Trigger: CTGCATCAGATCTTCTACCAAGGCCTGAAGGCCCGT...TCCCGTAAAACCGAAATACAAATGTCTGCACTCAAAATATAGATGTCTGCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp CAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCGAATGCAGGAAGGTGTaGAGAAAGTCAATGCTCAGG +
Preference number: 5 (lower is better)
Translates to: QRHATIIYNNRKAGVHRSECRKV*RKSMLR
Trigger: CCTGAGCATTGACTTTCTCAACACCTTCCTGCATTC...GCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 90 bp GTTCGATTAGGAGCGAAGACTCATACAGGCTTTCTTCGTCCAACATaGAAGATTCATCCAGTAAGTACTGAATTACCTTTGGCTGGGGGT +
Preference number: 5 (lower is better)
Translates to: VRLGAKTHTGFLRPT*KIHPVSTELPLAGG
Trigger: ACCCCCAGCCAAAGGTAATTCAGTACTTACTGGATGAATCTTTCATGTTGGACGAAGAAAGCCTGTATGAGTCTTCGCTCCTAATCGAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp ATGTCACTGTCCTCATCATCAGCAGAACCGGCTTTGTTGCTGGATTaGATACGATCATTGTCCTTGATCAGGTTTGTAATAGTTACCTCC +
Preference number: 5 (lower is better)
Translates to: MSLSSSSAEPALLLD*IRSLSLIRFVIVTS
Trigger: GGAGGTAACTATTACAAACCTGATCAAGGACAATGATCGTATCCAATCCAGCAACAAAGCCGGTTCTGCTGATGATGAGGACAGTGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp TATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGAAGCACACGCTTCATCATGAGCCCATaGCAGCGGATATTATCCACG +
Preference number: 5 (lower is better)
Translates to: YFGFTGQEEIIYSRGSTRFIMSP*QRILST
Trigger: CGTGGATAATATCCGCTGCAATGGGCTCATGATGAA...GCGTGTGCTTCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCACGGATCACAAACTCCTaGTCGATATTTCTCTGGTCA +
Preference number: 5 (lower is better)
Translates to: RGTRRLYTIIVKQVFTEARITNS*SIFLWS
Trigger: TGACCAGAGAAATATCGACAAGGAGTTTGTGATCCG...TGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AGACATCTATATTTTGAGTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAACATTCAGCACACGATaGGTGGCAGCTCTGCGGATC +
Preference number: 5 (lower is better)
Translates to: RHLYFECRHLYFGFTGQETFSTR*VAALRI
Trigger: GATCCGCAGAGCTGCCACCAATCGTGTGCTGAATGT...TTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCACTCAAAATATAGATGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp CAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCACAAGCTTTTGGAGCTaGTCAAGCAAAGATTTCGTC +
Preference number: 5 (lower is better)
Translates to: QRHATIIYNNRKAGVHRSTSFWS*SSKDFV
Trigger: GACGAAATCTTTGCTTGACAAGCTCCAAAAGCTTGT...GCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 90 bp TGGCATAGCGGATCTGAAGCACTTTGCAAGAATTCATGGTTTTGCTaGAGCGAATGTCAACATCATCACAATATAAGGAAGCGTCAGACT +
Preference number: 5 (lower is better)
Translates to: WHSGSEALCKNSWFC*SECQHHHNIRKRQT
Trigger: AGTCTGACGCTTCCTTATATTGTGATGATGTTGACATTCGCTTCAGCAAAACCATGAATTCTTGCAAAGTGCTTCAGATCCGCTATGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 90 bp GACTCTCTGAGGTTCTTAAATCTGCCATCTGATGACACAAGCTTTTaGAGCTTGTCAAGCAAAGATTTCGTCTGCTTAGAAACTTTGAGC +
Preference number: 5 (lower is better)
Translates to: DSLRFLNLPSDDTSF*SLSSKDFVCLETLS
Trigger: GCTCAAAGTTTCTAAGCAGACGAAATCTTTGCTTGACAAGCTCCAAAAGCTTGTGTCATCAGATGGCAGATTTAAGAACCTCAGAGAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp GTGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGAGGAAAAGCCTGTGTaGGCCAAAGACATCCTTCGA +
Preference number: 5 (lower is better)
Translates to: VQTFVFRFYGTRRDNIFSEEKPV*AKDILR
Trigger: TCGAAGGATGTCTTTGGCCAACACAGGCTTTTCCTC...CGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCATGCTATGTTGTTCAGTaGTTTCTTCTAGGGTCAGAG +
Preference number: 5 (lower is better)
Translates to: RGTRRLYTIIVKQVFTEACYVVQ*FLLGSE
Trigger: CTCTGACCCTAGAAGAAACAACTGAACAACATAGCA...TGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGATCAATGGCCAGGTTTTaGCGGATGTTCTCGGTTTCA +
Preference number: 5 (lower is better)
Translates to: RHLYFGFTGQEEIIYSRGSMARF*RMFSVS
Trigger: TGAAACCGAGAACATCCGCAAAAACCTGGCCATTGA...TCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp GAACAAGTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCAGATAATGAGATGCTaGGAGAATAGGAAACACTGG +
Preference number: 5 (lower is better)
Translates to: EQVQRHATIIYNNRKAGVQIMRC*ENRKHW
Trigger: CCAGTGTTTCCTATTCTCCAAGCATCTCATTATCTG...AACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTACTTGTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp TGCAGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGTGACACTTCTGTGTaGTCTTCATCACTGTGGTTC +
Preference number: 5 (lower is better)
Translates to: CRHLYFGFTGQEEIIYSRGDTSV*SSSLWF
Trigger: GAACCACAGTGATGAAGACAACACAGAAGTGTCACC...CCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGAAGCAACCTTCTTAATTTTCTaGATGTCACTGTCCTCATCA +
Preference number: 5 (lower is better)
Translates to: RGTRRLYTIIVKQVFTEATFLIF*MSLSSS
Trigger: TGATGAGGACAGTGACATCAAGAAAATTAAGAAGGT...TGCTTCTGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AAGTACAGAGGCACGCGACGATTATATACAATAATCGTAAAGCAGGTGTTCACAGTCTGCTTAGAAACTTaGAGCCATGTCTTTTTGAGA +
Preference number: 5 (lower is better)
Translates to: KYRGTRRLYTIIVKQVFTVCLET*SHVFLR
Trigger: TCTCAAAAAGACATGGCTCAAAGTTTCTAAGCAGAC...TGTGAACACCTGCTTTACGATTATTGTATATAATCGTCGCGTGCCTCTGTACTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS-3UTR CAA 90 bp AGACATTTGTATTTCGGTTTTACGGGACAAGAAGAGATAATATATTCTCGGGGACAAGAATTCATGGTTTaGCTGAAGCGAATGTCAACA +
Preference number: 5 (lower is better)
Translates to: RHLYFGFTGQEEIIYSRGQEFMV*LKRMST
Trigger: TGTTGACATTCGCTTCAGCAAAACCATGAATTCTTG...TCCCCGAGAATATATTATCTCTTCTTGTCCCGTAAAACCGAAATACAAATGTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp ACAGCTTCCGACGGCGGCTGGGGGATGACGTCCCGATaGCCAAGGGCGGTGGCGAGGAGAACTTGCGGCTGG +
Preference number: 6 (lower is better)
Translates to: TASDGGWGMTSR*PRAVARRTCGW
Trigger: CCAGCCGCAAGTTCTCCTCGCCACCGCCCTTGGCCATCGGGACGTCATCCCCCAGCCGCCGTCGGAAGCTGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp GACGTCCCGATGGCCAAGGGCGGTGGCGAGGAGAACTaGCGGCTGGCGCGAGGGGACTTAGGGGCATCTCCG +
Preference number: 6 (lower is better)
Translates to: DVPMAKGGGEEN*RLARGDLGASP
Trigger: CGGAGATGCCCCTAAGTCCCCTCGCGCCAGCCGCAAGTTCTCCTCGCCACCGCCCTTGGCCATCGGGACGTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 72 bp GATGTTGAGGGACAGCTTCCGACGGCGGCTGGGGGATaGCGTCCCGATGGCCAAGGGCGGTGGCGAGGAGAA +
Preference number: 6 (lower is better)
Translates to: DVEGQLPTAAGG*RPDGQGRWRGE
Trigger: TTCTCCTCGCCACCGCCCTTGGCCATCGGGACGTCATCCCCCAGCCGCCGTCGGAAGCTGTCCCTCAACATC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp AGGGAAGCCAGTTCCAGCGCCTTGCCGCCTGTGATGATGGGGATGTaGAGGGACAGCTTCCGACGGCGGCTGGGGGATGACGTCCCGATG +
Preference number: 6 (lower is better)
Translates to: REASSSALPPVMMGM*RDSFRRRLGDDVPM
Trigger: CATCGGGACGTCATCCCCCAGCCGCCGTCGGAAGCTGTCCCTCAACATCCCCATCATCACAGGCGGCAAGGCGCTGGAACTGGCTTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp AGTTCCAGCGCCTTGCCGCCTGTGATGATGGGGATGTaGAGGGACAGCTTCCGACGGCGGCTGGGGGATGAC +
Preference number: 6 (lower is better)
Translates to: SSSALPPVMMGM*RDSFRRRLGDD
Trigger: GTCATCCCCCAGCCGCCGTCGGAAGCTGTCCCTCAACATCCCCATCATCACAGGCGGCAAGGCGCTGGAACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 72 bp CTTGCTCAGGTAGCCTTTGCGCGTGCCGTCCTTCTGTaGCAGCAGTCCCAGGGTCACGACGTGGCCATCGTT +
Preference number: 6 (lower is better)
Translates to: LAQVAFARAVLL*QQSQGHDVAIV
Trigger: AACGATGGCCACGTCGTGACCCTGGGACTGCTGGCACAGAAGGACGGCACGCGCAAAGGCTACCTGAGCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034909.11
ENSMUST00000034912.6
ENSMUST00000189545.2
CDS CCA 72 bp TACTCAGCCTCGGCCTCCAGCATGCTGAACACCACCTaGTTCCTCTTGCGCATGCTGTCCGCGTGGGGAGAC +
Preference number: 6 (lower is better)
Translates to: YSASASSMLNTT*FLLRMLSAWGD
Trigger: GTCTCCCCACGCGGACAGCATGCGCAAGAGGAACCAGGTGGTGTTCAGCATGCTGGAGGCCGAGGCTGAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp GCGCGAGCGATCGCAGCCACCCACTCGTCACAGTCCTaGGCATCCTCGGTCCTCAACTCCAAGGTCTTCTGG +
Preference number: 6 (lower is better)
Translates to: ARAIAATHSSQS*ASSVLNSKVFW
Trigger: CCAGAAGACCTTGGAGTTGAGGACCGAGGATGCCAAGGACTGTGACGAGTGGGTGGCTGCGATCGCTCGCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp TTCCCTCGAGCAGGTAGAGCCCCGAGGGCCGAGGGCTaGAGTCGCTTTCGAAGTAGAAAAGCAGGTTCTGGA +
Preference number: 6 (lower is better)
Translates to: FPRAGRAPRAEG*SRFRSRKAGSG
Trigger: TCCAGAACCTGCTTTTCTACTTCGAAAGCGACTCCAGCCCTCGGCCCTCGGGGCTCTACCTGCTCGAGGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034909.11
ENSMUST00000034912.6
ENSMUST00000189545.2
CDS CCA 72 bp AGGCGCTCGATCTCAACCTCACCGTCCTCAAGCTGCTaGCGCAGCTGCTTAGCCACAGTCTTCTCTGTCTCC +
Preference number: 6 (lower is better)
Translates to: RRSISTSPSSSC*RSCLATVFSVS
Trigger: GGAGACAGAGAAGACTGTGGCTAAGCAGCTGCGCCAGCAGCTTGAGGACGGTGAGGTTGAGATCGAGCGCCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 72 bp TTCAGGCGCTCGATCTCAACCTCACCGTCCTCAAGCTaGTGGCGCAGCTGCTTAGCCACAGTCTTCTCTGTC +
Preference number: 6 (lower is better)
Translates to: FRRSISTSPSSS*WRSCLATVFSV
Trigger: GACAGAGAAGACTGTGGCTAAGCAGCTGCGCCAGCAGCTTGAGGACGGTGAGGTTGAGATCGAGCGCCTGAA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp GGTGAGGAAGGTCTCCAGTGTGCGCTCCTCGCAGTCTaGCTTGGCCTCGTACTGCTTGAGGAGCTTGTCAAA +
Preference number: 6 (lower is better)
Translates to: GEEGLQCALLAV*LGLVLLEELVK
Trigger: TTTGACAAGCTCCTCAAGCAGTACGAGGCCAAGCCAGACTGCGAGGAGCGCACACTGGAGACCTTCCTCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp ATCCAGCAGGGTCAGCTGCTCTGCTATCTCCAGGGCTaGGTGGTTTTCGAAGGGCTCAGTCTTCACACCCTC +
Preference number: 6 (lower is better)
Translates to: IQQGQLLCYLQG*VVFEGLSLHTL
Trigger: GAGGGTGTGAAGACTGAGCCCTTCGAAAACCACCCAGCCCTGGAGATAGCAGAGCAGCTGACCCTGCTGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp GTGCGCTCCTCGCAGTCTGGCTTGGCCTCGTACTGCTaGAGGAGCTTGTCAAAGTCCCGGTTTTGCTTGCAG +
Preference number: 6 (lower is better)
Translates to: VRSSQSGLASYC*RSLSKSRFCLQ
Trigger: CTGCAAGCAAAACCGGGACTTTGACAAGCTCCTCAAGCAGTACGAGGCCAAGCCAGACTGCGAGGAGCGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp AGGAAGGTCTCCAGTGTGCGCTCCTCGCAGTCTGGCTaGGCCTCGTACTGCTTGAGGAGCTTGTCAAAGTCC +
Preference number: 6 (lower is better)
Translates to: RKVSSVRSSQSG*ASYCLRSLSKS
Trigger: GGACTTTGACAAGCTCCTCAAGCAGTACGAGGCCAAGCCAGACTGCGAGGAGCGCACACTGGAGACCTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 72 bp TGCGCTCCTCGCAGTCTGGCTTGGCCTCGTACTGCTTaGGGAGCTTGTCAAAGTCCCGGTTTTGCTTGCAGT +
Preference number: 6 (lower is better)
Translates to: CAPRSLAWPRTA*GACQSPGFACS
Trigger: ACTGCAAGCAAAACCGGGACTTTGACAAGCTCCTCAAGCAGTACGAGGCCAAGCCAGACTGCGAGGAGCGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 72 bp TCAGGATGTACCTGGGGATCTGGAACATTGGGTAGGTaGGGAAGGTCTCCAGTGTGCGCTCCTCGCAGTCTG +
Preference number: 6 (lower is better)
Translates to: SGCTWGSGTLGR*GRSPVCAPRSL
Trigger: CAGACTGCGAGGAGCGCACACTGGAGACCTTCCTCACCTACCCAATGTTCCAGATCCCCAGGTACATCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 72 bp GCGTATCGTCGGTATCAAAGTCCTGGGTGTGCTTGGTaGCCCAGTGGCGGAGCACATTCAGCACACGATTGG +
Preference number: 6 (lower is better)
Translates to: AYRRYQSPGCAW*PSGGAHSAHDW
Trigger: CCAATCGTGTGCTGAATGTGCTCCGCCACTGGGTCACCAAGCACACCCAGGACTTTGATACCGACGATACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 72 bp ATCTCAACCTCACCGTCCTCAAGCTGCTGGCGCAGCTaGTTAGCCACAGTCTTCTCTGTCTCCACTACCTGC +
Preference number: 6 (lower is better)
Translates to: ISTSPSSSCWRS*LATVFSVSTTC
Trigger: GCAGGTAGTGGAGACAGAGAAGACTGTGGCTAAGCAGCTGCGCCAGCAGCTTGAGGACGGTGAGGTTGAGAT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 72 bp AGTGTGCGCTCCTCGCAGTCTGGCTTGGCCTCGTACTaGTTGAGGAGCTTGTCAAAGTCCCGGTTTTGCTTG +
Preference number: 6 (lower is better)
Translates to: SVRSSQSGLASY*LRSLSKSRFCL
Trigger: CAAGCAAAACCGGGACTTTGACAAGCTCCTCAAGCAGTACGAGGCCAAGCCAGACTGCGAGGAGCGCACACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp GGGCATCTCCGTACAGAAGCTTGGCGTTGTGGCTGCTaGAAAACAAGAGTTCCAGGGACCTGGCAGGAATCG +
Preference number: 6 (lower is better)
Translates to: GHLRTEAWRCGC*KTRVPGTWQES
Trigger: CGATTCCTGCCAGGTCCCTGGAACTCTTGTTTTCCAGCAGCCACAACGCCAAGCTTCTGTACGGAGATGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp TGGAGGCTGAGAGCTCCCCAGGCTTCTCTGGAATCGTaGCAGGCACATCAATCTCCTCTGGAGTCTTGGGTA +
Preference number: 6 (lower is better)
Translates to: WRLRAPQASLES*QAHQSPLESWV
Trigger: TACCCAAGACTCCAGAGGAGATTGATGTGCCTGCCACGATTCCAGAGAAGCCTGGGGAGCTCTCAGCCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp TTGGTGACCCAGTGGCGGAGCACATTCAGCACACGATaGGTGGCAGCTCTGCGGATCACAAACTCCTTGTCG +
Preference number: 6 (lower is better)
Translates to: LVTQWRSTFSTR*VAALRITNSLS
Trigger: CGACAAGGAGTTTGTGATCCGCAGAGCTGCCACCAATCGTGTGCTGAATGTGCTCCGCCACTGGGTCACCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 72 bp TTCTTTCAGGACATCAGAGCTATGCTTCCTGGAGGCTaGGAGCTCCCCAGGCTTCTCTGGAATCGTGGCAGG +
Preference number: 6 (lower is better)
Translates to: FFQDIRAMLPGG*ELPRLLWNRGR
Trigger: CCTGCCACGATTCCAGAGAAGCCTGGGGAGCTCTCAGCCTCCAGGAAGCATAGCTCTGATGTCCTGAAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 72 bp ACTTGGTTTGCCATTTTGGGTTGTCCGCACTCCTCTTaGTCAGGTAGCCTTTGCGCGTGCCGTCCTTCTGTG +
Preference number: 6 (lower is better)
Translates to: TWFAILGCPHSS*SGSLCACRPSV
Trigger: CACAGAAGGACGGCACGCGCAAAGGCTACCTGAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034909.11
ENSMUST00000034912.6
ENSMUST00000189545.2
CDS CAA 72 bp GGAATCGTGGCAGGCACATCAATCTCCTCTGGAGTCTaGGGTAAGCTGCTGGCCATACAGAGCTTGCCAGTG +
Preference number: 6 (lower is better)
Translates to: GIVAGTSISSGV*GKLLAIQSLPV
Trigger: CACTGGCAAGCTCTGTATGGCCAGCAGCTTACCCAAGACTCCAGAGGAGATTGATGTGCCTGCCACGATTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp TTGAGCGTATCGTCGGTATCAAAGTCCTGGGTGTGCTaGGTGACCCAGTGGCGGAGCACATTCAGCACACGA +
Preference number: 6 (lower is better)
Translates to: LSVSSVSKSWVC*VTQWRSTFSTR
Trigger: TCGTGTGCTGAATGTGCTCCGCCACTGGGTCACCAAGCACACCCAGGACTTTGATACCGACGATACGCTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp AGAAAAGCAGGTTCTGGAGCAGGGCAAACCACTTGGTTTGCCATTTaGGGTTGTCCGCACTCCTCTTGCTCAGGTAGCCTTTGCGCGTGC +
Preference number: 6 (lower is better)
Translates to: RKAGSGAGQTTWFAI*GCPHSSCSGSLCAC
Trigger: GCACGCGCAAAGGCTACCTGAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGCTCCAGAACCTGCTTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034909.11
ENSMUST00000034912.6
ENSMUST00000189545.2
CDS CAA 90 bp TGGGTGTGCTTGGTGACCCAGTGGCGGAGCACATTCAGCACACGATaGGTGGCAGCTCTGCGGATCACAAACTCCTTGTCGATATTTCTC +
Preference number: 6 (lower is better)
Translates to: WVCLVTQWRSTFSTR*VAALRITNSLSIFL
Trigger: GAGAAATATCGACAAGGAGTTTGTGATCCGCAGAGCTGCCACCAATCGTGTGCTGAATGTGCTCCGCCACTGGGTCACCAAGCACACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 72 bp CTGGAGTCTTGGGTAAGCTGCTGGCCATACAGAGCTTaGCAGTGTCCAGTGTGGTTTTGCCGAAGGGAGATA +
Preference number: 6 (lower is better)
Translates to: LESWVSCWPYRA*QCPVWFCRREI
Trigger: TATCTCCCTTCGGCAAAACCACACTGGACACTGGCAAGCTCTGTATGGCCAGCAGCTTACCCAAGACTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp CTCCACCCCGATCTTAAACTCCAGGTGTTCTATCTCTaGTCCGGCTCCTTTGGCTTCGTCGTCCAGGTTTTC +
Preference number: 6 (lower is better)
Translates to: LHPDLKLQVFYL*SGSFGFVVQVF
Trigger: GAAAACCTGGACGACGAAGCCAAAGGAGCCGGACCAGAGATAGAACACCTGGAGTTTAAGATCGGGGTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp GAATCGTGGCAGGCACATCAATCTCCTCTGGAGTCTTaGGTAAGCTGCTGGCCATACAGAGCTTGCCAGTGT +
Preference number: 6 (lower is better)
Translates to: ESWQAHQSPLES*VSCWPYRACQC
Trigger: ACACTGGCAAGCTCTGTATGGCCAGCAGCTTACCCAAGACTCCAGAGGAGATTGATGTGCCTGCCACGATTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp ACCCTGTATTTGAGCGTATCGTCGGTATCAAAGTCCTaGGTGTGCTTGGTGACCCAGTGGCGGAGCACATTC +
Preference number: 6 (lower is better)
Translates to: TLYLSVSSVSKS*VCLVTQWRSTF
Trigger: GAATGTGCTCCGCCACTGGGTCACCAAGCACACCCAGGACTTTGATACCGACGATACGCTCAAATACAGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp CTGGCCATACAGAGCTTGCCAGTGTCCAGTGTGGTTTaGCCGAAGGGAGATATGGGTGAGTGTATGTTGGCG +
Preference number: 6 (lower is better)
Translates to: LAIQSLPVSSVV*PKGDMGECMLA
Trigger: CGCCAACATACACTCACCCATATCTCCCTTCGGCAAAACCACACTGGACACTGGCAAGCTCTGTATGGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp TCTGGAGTCTTGGGTAAGCTGCTGGCCATACAGAGCTaGCCAGTGTCCAGTGTGGTTTTGCCGAAGGGAGAT +
Preference number: 6 (lower is better)
Translates to: SGVLGKLLAIQS*PVSSVVLPKGD
Trigger: ATCTCCCTTCGGCAAAACCACACTGGACACTGGCAAGCTCTGTATGGCCAGCAGCTTACCCAAGACTCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp CAAGGTCTTCTGGCTGTCATTGGAGAAGTTCACTGTGAAGTAATGTaGCTGTTTCTCGCCGGACTCCTTGGAGGAGGTCCCTCGCTTGGG +
Preference number: 6 (lower is better)
Translates to: QGLLAVIGEVHCEVM*LFLAGLLGGGPSLG
Trigger: CCCAAGCGAGGGACCTCCTCCAAGGAGTCCGGCGAGAAACAGCAACATTACTTCACAGTGAACTTCTCCAATGACAGCCAGAAGACCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 72 bp TGGCCATACAGAGCTTGCCAGTGTCCAGTGTGGTTTTaGCGAAGGGAGATATGGGTGAGTGTATGTTGGCGT +
Preference number: 6 (lower is better)
Translates to: WPYRACQCPVWF*RREIWVSVCWR
Trigger: ACGCCAACATACACTCACCCATATCTCCCTTCGGCAAAACCACACTGGACACTGGCAAGCTCTGTATGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 72 bp GGCGGAGCACATTCAGCACACGATTGGTGGCAGCTCTaGGGATCACAAACTCCTTGTCGATATTTCTCTGGT +
Preference number: 6 (lower is better)
Translates to: GGAHSAHDWWQL*GSQTPCRYFSG
Trigger: ACCAGAGAAATATCGACAAGGAGTTTGTGATCCGCAGAGCTGCCACCAATCGTGTGCTGAATGTGCTCCGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp GTTCTGGAGCAGGGCAAACCACTTGGTTTGCCATTTTaGGTTGTCCGCACTCCTCTTGCTCAGGTAGCCTTT +
Preference number: 6 (lower is better)
Translates to: VLEQGKPLGLPF*VVRTPLAQVAF
Trigger: AAAGGCTACCTGAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGCTCCAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034909.11
ENSMUST00000034912.6
ENSMUST00000189545.2
CDS CCA 72 bp AGCTGCTGGCCATACAGAGCTTGCCAGTGTCCAGTGTaGTTTTGCCGAAGGGAGATATGGGTGAGTGTATGT +
Preference number: 6 (lower is better)
Translates to: SCWPYRACQCPV*FCRREIWVSVC
Trigger: ACATACACTCACCCATATCTCCCTTCGGCAAAACCACACTGGACACTGGCAAGCTCTGTATGGCCAGCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp GCACATCAATCTCCTCTGGAGTCTTGGGTAAGCTGCTaGCCATACAGAGCTTGCCAGTGTCCAGTGTGGTTT +
Preference number: 6 (lower is better)
Translates to: AHQSPLESWVSC*PYRACQCPVWF
Trigger: AAACCACACTGGACACTGGCAAGCTCTGTATGGCCAGCAGCTTACCCAAGACTCCAGAGGAGATTGATGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp GAAAAGCAGGTTCTGGAGCAGGGCAAACCACTTGGTTaGCCATTTTGGGTTGTCCGCACTCCTCTTGCTCAG +
Preference number: 6 (lower is better)
Translates to: EKQVLEQGKPLG*PFWVVRTPLAQ
Trigger: CTGAGCAAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGCTCCAGAACCTGCTTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034909.11
ENSMUST00000034912.6
ENSMUST00000189545.2
CDS CAA 72 bp CTGGCTGTCATTGGAGAAGTTCACTGTGAAGTAATGTaGCTGTTTCTCGCCGGACTCCTTGGAGGAGGTCCC +
Preference number: 6 (lower is better)
Translates to: LAVIGEVHCEVM*LFLAGLLGGGP
Trigger: GGGACCTCCTCCAAGGAGTCCGGCGAGAAACAGCAACATTACTTCACAGTGAACTTCTCCAATGACAGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp TGTTGGCCAAAGACATCCTTCGAAACACCTCCTTGTTaGAGGGGCCTTCATTGGCTCCTGCAGTCGCTATGG +
Preference number: 6 (lower is better)
Translates to: CWPKTSFETPPC*RGLHWLLQSLW
Trigger: CCATAGCGACTGCAGGAGCCAATGAAGGCCCCTCAAACAAGGAGGTGTTTCGAAGGATGTCTTTGGCCAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp GCCAAAGACATCCTTCGAAACACCTCCTTGTTTGAGGGGCCTTCATaGGCTCCTGCAGTCGCTATGGCAAAGGCAGAAGTAGCTGAGAGA +
Preference number: 6 (lower is better)
Translates to: AKDILRNTSLFEGPS*APAVAMAKAEVAER
Trigger: TCTCTCAGCTACTTCTGCCTTTGCCATAGCGACTGCAGGAGCCAATGAAGGCCCCTCAAACAAGGAGGTGTTTCGAAGGATGTCTTTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp AAAAGCCTGTGTTGGCCAAAGACATCCTTCGAAACACCTCCTTGTTaGAGGGGCCTTCATTGGCTCCTGCAGTCGCTATGGCAAAGGCAG +
Preference number: 6 (lower is better)
Translates to: KSLCWPKTSFETPPC*RGLHWLLQSLWQRQ
Trigger: CTGCCTTTGCCATAGCGACTGCAGGAGCCAATGAAGGCCCCTCAAACAAGGAGGTGTTTCGAAGGATGTCTTTGGCCAACACAGGCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp GAGGAAAAGCCTGTGTTGGCCAAAGACATCCTTCGAAACACCTCCTaGTTTGAGGGGCCTTCATTGGCTCCTGCAGTCGCTATGGCAAAG +
Preference number: 6 (lower is better)
Translates to: EEKPVLAKDILRNTS*FEGPSLAPAVAMAK
Trigger: CTTTGCCATAGCGACTGCAGGAGCCAATGAAGGCCCCTCAAACAAGGAGGTGTTTCGAAGGATGTCTTTGGCCAACACAGGCTTTTCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp TCTGGGTCATGCATGACCTCCTCCAGGAAACAGATCACCCTGTATTaGAGCGTATCGTCGGTATCAAAGTCCTGGGTGTGCTTGGTGACC +
Preference number: 6 (lower is better)
Translates to: SGSCMTSSRKQITLY*SVSSVSKSWVCLVT
Trigger: GGTCACCAAGCACACCCAGGACTTTGATACCGACGATACGCTCAAATACAGGGTGATCTGTTTCCTGGAGGAGGTCATGCATGACCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp AGGTGCAGTTTCCCACCAGAGCCTCTGGTGCAGATAATGAGATGCTaGGAGAATAGGAAACACTGGCGCTCACCCTCTTTCTTAGTGGAC +
Preference number: 6 (lower is better)
Translates to: RCSFPPEPLVQIMRC*ENRKHWRSPSFLVD
Trigger: GTCCACTAAGAAAGAGGGTGAGCGCCAGTGTTTCCTATTCTCCAAGCATCTCATTATCTGCACCAGAGGCTCTGGTGGGAAACTGCACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp GTCGCTATGGCAAAGGCAGAAGTAGCTGAGAGAGTGCTGCGGTTATaGTCCACCAGATCACGACACGTGGTCATCAGGATTCCATTGTTG +
Preference number: 6 (lower is better)
Translates to: VAMAKAEVAERVLRL*STRSRHVVIRIPLL
Trigger: CAACAATGGAATCCTGATGACCACGTGTCGTGATCTGGTGGACAATAACCGCAGCACTCTCTCAGCTACTTCTGCCTTTGCCATAGCGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 72 bp AGCTGCTTAGCCACAGTCTTCTCTGTCTCCACTACCTaGAGCAGGTGTAAGTACTTCTGCATAAGCGCCTCA +
Preference number: 6 (lower is better)
Translates to: SCLATVFSVSTT*SRCKYFCISAS
Trigger: TGAGGCGCTTATGCAGAAGTACTTACACCTGCTGCAGGTAGTGGAGACAGAGAAGACTGTGGCTAAGCAGCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp AGTAGAAAAGCAGGTTCTGGAGCAGGGCAAACCACTTaGTTTGCCATTTTGGGTTGTCCGCACTCCTCTTGC +
Preference number: 6 (lower is better)
Translates to: SRKAGSGAGQTT*FAILGCPHSSC
Trigger: GCAAGAGGAGTGCGGACAACCCAAAATGGCAAACCAAGTGGTTTGCCCTGCTCCAGAACCTGCTTTTCTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034909.11
ENSMUST00000034912.6
ENSMUST00000189545.2
CDS CCA 72 bp CGTTGTCAAGTCTTCTGGCTTTCCCATCCATGTCTGTaGAGCTGGAGCAACGGTACCGATCTCTGTCCTAAT +
Preference number: 6 (lower is better)
Translates to: RCQVFWLSHPCL*SWSNGTDLCPN
Trigger: ATTAGGACAGAGATCGGTACCGTTGCTCCAGCTCCACAGACATGGATGGGAAAGCCAGAAGACTTGACAACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034909.11
CDS CAA 72 bp TTCCCACCAGAGCCTCTGGTGCAGATAATGAGATGCTaGGAGAATAGGAAACACTGGCGCTCACCCTCTTTC +
Preference number: 6 (lower is better)
Translates to: FPPEPLVQIMRC*ENRKHWRSPSF
Trigger: GAAAGAGGGTGAGCGCCAGTGTTTCCTATTCTCCAAGCATCTCATTATCTGCACCAGAGGCTCTGGTGGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp TTAAACTCCAGGTGTTCTATCTCTGGTCCGGCTCCTTaGGCTTCGTCGTCCAGGTTTTCGGGTTCATCCAGT +
Preference number: 6 (lower is better)
Translates to: LNSRCSISGPAP*ASSSRFSGSSS
Trigger: ACTGGATGAACCCGAAAACCTGGACGACGAAGCCAAAGGAGCCGGACCAGAGATAGAACACCTGGAGTTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp GCAAAGGCAGAAGTAGCTGAGAGAGTGCTGCGGTTATaGTCCACCAGATCACGACACGTGGTCATCAGGATT +
Preference number: 6 (lower is better)
Translates to: AKAEVAERVLRL*STRSRHVVIRI
Trigger: AATCCTGATGACCACGTGTCGTGATCTGGTGGACAATAACCGCAGCACTCTCTCAGCTACTTCTGCCTTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp ATCCTTCGAAACACCTCCTTGTTTGAGGGGCCTTCATaGGCTCCTGCAGTCGCTATGGCAAAGGCAGAAGTA +
Preference number: 6 (lower is better)
Translates to: ILRNTSLFEGPS*APAVAMAKAEV
Trigger: TACTTCTGCCTTTGCCATAGCGACTGCAGGAGCCAATGAAGGCCCCTCAAACAAGGAGGTGTTTCGAAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp TGCATGACCTCCTCCAGGAAACAGATCACCCTGTATTaGAGCGTATCGTCGGTATCAAAGTCCTGGGTGTGC +
Preference number: 6 (lower is better)
Translates to: CMTSSRKQITLY*SVSSVSKSWVC
Trigger: GCACACCCAGGACTTTGATACCGACGATACGCTCAAATACAGGGTGATCTGTTTCCTGGAGGAGGTCATGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 72 bp CCAAGGTCTTCTGGCTGTCATTGGAGAAGTTCACTGTaGAGTAATGTTGCTGTTTCTCGCCGGACTCCTTGG +
Preference number: 6 (lower is better)
Translates to: PRSSGCHWRSSL*SNVAVSRRTPW
Trigger: CCAAGGAGTCCGGCGAGAAACAGCAACATTACTTCACAGTGAACTTCTCCAATGACAGCCAGAAGACCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp CAAGTCTTCTGGCTTTCCCATCCATGTCTGTGGAGCTaGAGCAACGGTACCGATCTCTGTCCTAATTATGGA +
Preference number: 6 (lower is better)
Translates to: QVFWLSHPCLWS*SNGTDLCPNYG
Trigger: TCCATAATTAGGACAGAGATCGGTACCGTTGCTCCAGCTCCACAGACATGGATGGGAAAGCCAGAAGACTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034909.11
CDS CCA 72 bp GTGCAGATAATGAGATGCTTGGAGAATAGGAAACACTaGCGCTCACCCTCTTTCTTAGTGGACAGAGACCCC +
Preference number: 6 (lower is better)
Translates to: VQIMRCLENRKH*RSPSFLVDRDP
Trigger: GGGGTCTCTGTCCACTAAGAAAGAGGGTGAGCGCCAGTGTTTCCTATTCTCCAAGCATCTCATTATCTGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp CGTTGTGGCTGCTGGAAAACAAGAGTTCCAGGGACCTaGCAGGAATCGCACTCATGGGTTTTCTGTAGATAT +
Preference number: 6 (lower is better)
Translates to: RCGCWKTRVPGT*QESHSWVFCRY
Trigger: ATATCTACAGAAAACCCATGAGTGCGATTCCTGCCAGGTCCCTGGAACTCTTGTTTTCCAGCAGCCACAACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp ACACGATTGGTGGCAGCTCTGCGGATCACAAACTCCTaGTCGATATTTCTCTGGTCAGAGGAAAAGCCTGTG +
Preference number: 6 (lower is better)
Translates to: TRLVAALRITNS*SIFLWSEEKPV
Trigger: CACAGGCTTTTCCTCTGACCAGAGAAATATCGACAAGGAGTTTGTGATCCGCAGAGCTGCCACCAATCGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp TCAGTTGTTTCTTCTAGGGTCAGAGTCCTGATGATGTaGGCTGCTGCCTTTCGCTCTTGGGTCAGAAGGTCT +
Preference number: 6 (lower is better)
Translates to: SVVSSRVRVLMM*AAAFRSWVRRS
Trigger: AGACCTTCTGACCCAAGAGCGAAAGGCAGCAGCCAACATCATCAGGACTCTGACCCTAGAAGAAACAACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS GCA 72 bp TCTGTCTCCACTACCTGCAGCAGGTGTAAGTACTTCTaGATAAGCGCCTCATGTTCTGTAGCCAGTATCTTG +
Preference number: 6 (lower is better)
Translates to: SVSTTCSRCKYF*ISASCSVASIL
Trigger: CAAGATACTGGCTACAGAACATGAGGCGCTTATGCAGAAGTACTTACACCTGCTGCAGGTAGTGGAGACAGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp GGTGACACTTCTGTGTTGTCTTCATCACTGTGGTTCTaGTCATCCTCGGACTCTTCTTTCAGGACATCAGAG +
Preference number: 6 (lower is better)
Translates to: GDTSVLSSSLWF*SSSDSSFRTSE
Trigger: CTCTGATGTCCTGAAAGAAGAGTCCGAGGATGACCAGAACCACAGTGATGAAGACAACACAGAAGTGTCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp GCTCTGCGGATCACAAACTCCTTGTCGATATTTCTCTaGTCAGAGGAAAAGCCTGTGTTGGCCAAAGACATC +
Preference number: 6 (lower is better)
Translates to: ALRITNSLSIFL*SEEKPVLAKDI
Trigger: GATGTCTTTGGCCAACACAGGCTTTTCCTCTGACCAGAGAAATATCGACAAGGAGTTTGTGATCCGCAGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp GTCGGTGAGATACATCCCCAGGTAAGGGACACAGGGTaGATCACAATTTCTCAAAGACTCTCTGAGGTTCTT +
Preference number: 6 (lower is better)
Translates to: VGEIHPQVRDTG*ITISQRLSEVL
Trigger: AAGAACCTCAGAGAGTCTTTGAGAAATTGTGATCCACCCTGTGTCCCTTACCTGGGGATGTATCTCACCGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp GATTTCGTCTGCTTAGAAACTTTGAGCCATGTCTTTTaGAGACGGAAGATGGCGCTGCGGTTGATGGAGGAG +
Preference number: 6 (lower is better)
Translates to: DFVCLETLSHVF*RRKMALRLMEE
Trigger: CTCCTCCATCAACCGCAGCGCCATCTTCCGTCTCAAAAAGACATGGCTCAAAGTTTCTAAGCAGACGAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp ACGGTGACCTTGGAATTTTCTTCAAAGGCATTCATCATGAGCCCATaGCAGCGGATATTATCCACGCACTGGATGATGTCACTGGTCCAT +
Preference number: 6 (lower is better)
Translates to: TVTLEFSSKAFIMSP*QRILSTHWMMSLVH
Trigger: ATGGACCAGTGACATCATCCAGTGCGTGGATAATATCCGCTGCAATGGGCTCATGATGAATGCCTTTGAAGAAAATTCCAAGGTCACCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 72 bp CGAAGGGCTCAGTCTTCACACCCTCCGTCATCAGTATaGCTTCTTCCAGCATGCTATGTTGTTCAGTTGTTT +
Preference number: 6 (lower is better)
Translates to: RRAQSSHPPSSV*LLPACYVVQLF
Trigger: AAACAACTGAACAACATAGCATGCTGGAAGAAGTCATACTGATGACGGAGGGTGTGAAGACTGAGCCCTTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp ATGTCACTGTCCTCATCATCAGCAGAACCGGCTTTGTaGCTGGATTGGATACGATCATTGTCCTTGATCAGG +
Preference number: 6 (lower is better)
Translates to: MSLSSSSAEPAL*LDWIRSLSLIR
Trigger: CCTGATCAAGGACAATGATCGTATCCAATCCAGCAACAAAGCCGGTTCTGCTGATGATGAGGACAGTGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp AACGATTTTGGTGTTGGTGGGGATTTAACTGGTGACACTTCTGTGTaGTCTTCATCACTGTGGTTCTGGTCATCCTCGGACTCTTCTTTC +
Preference number: 6 (lower is better)
Translates to: NDFGVGGDLTGDTSV*SSSLWFWSSSDSSF
Trigger: GAAAGAAGAGTCCGAGGATGACCAGAACCACAGTGATGAAGACAACACAGAAGTGTCACCAGTTAAATCCCCACCAACACCAAAATCGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 72 bp TGGCTGTCATCCCAGTCAATTCAATTGCCACCAGCCTaGATGTTTTTGAGATCCTGGTTGGTTGTCTTCTCA +
Preference number: 6 (lower is better)
Translates to: WLSSQSIQLPPA*MFLRSWLVVFS
Trigger: TGAGAAGACAACCAACCAGGATCTCAAAAACATTCAGGCTGGTGGCAATTGAATTGACTGGGATGACAGCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS CCA 72 bp TGTCGATATTTCTCTGGTCAGAGGAAAAGCCTGTGTTaGCCAAAGACATCCTTCGAAACACCTCCTTGTTTG +
Preference number: 6 (lower is better)
Translates to: CRYFSGQRKSLC*PKTSFETPPCL
Trigger: CAAACAAGGAGGTGTTTCGAAGGATGTCTTTGGCCAACACAGGCTTTTCCTCTGACCAGAGAAATATCGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp TTGATGTCACTGTCCTCATCATCAGCAGAACCGGCTTaGTTGCTGGATTGGATACGATCATTGTCCTTGATC +
Preference number: 6 (lower is better)
Translates to: LMSLSSSSAEPA*LLDWIRSLSLI
Trigger: GATCAAGGACAATGATCGTATCCAATCCAGCAACAAAGCCGGTTCTGCTGATGATGAGGACAGTGACATCAA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp GATGTCACTGTCCTCATCATCAGCAGAACCGGCTTTGTTGCTGGATaGGATACGATCATTGTCCTTGATCAGGTTTGTAATAGTTACCTC +
Preference number: 6 (lower is better)
Translates to: DVTVLIISRTGFVAG*DTIIVLDQVCNSYL
Trigger: GAGGTAACTATTACAAACCTGATCAAGGACAATGATCGTATCCAATCCAGCAACAAAGCCGGTTCTGCTGATGATGAGGACAGTGACATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 72 bp CCCAGTCAATTCAATTGCCACCAGCCTGAATGTTTTTaGGATCCTGGTTGGTTGTCTTCTCAGAACATTACG +
Preference number: 6 (lower is better)
Translates to: PSQFNCHQPECF*DPGWLSSQNIT
Trigger: CGTAATGTTCTGAGAAGACAACCAACCAGGATCTCAAAAACATTCAGGCTGGTGGCAATTGAATTGACTGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034909.11
ENSMUST00000189545.2
CDS CAA 72 bp GTCCTCATCATCAGCAGAACCGGCTTTGTTGCTGGATaGGATACGATCATTGTCCTTGATCAGGTTTGTAAT +
Preference number: 6 (lower is better)
Translates to: VLIISRTGFVAG*DTIIVLDQVCN
Trigger: ATTACAAACCTGATCAAGGACAATGATCGTATCCAATCCAGCAACAAAGCCGGTTCTGCTGATGATGAGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp TTGTCGATATTTCTCTGGTCAGAGGAAAAGCCTGTGTaGGCCAAAGACATCCTTCGAAACACCTCCTTGTTT +
Preference number: 6 (lower is better)
Translates to: LSIFLWSEEKPV*AKDILRNTSLF
Trigger: AAACAAGGAGGTGTTTCGAAGGATGTCTTTGGCCAACACAGGCTTTTCCTCTGACCAGAGAAATATCGACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp AGCTTGTCAAGCAAAGATTTCGTCTGCTTAGAAACTTaGAGCCATGTCTTTTTGAGACGGAAGATGGCGCTG +
Preference number: 6 (lower is better)
Translates to: SLSSKDFVCLET*SHVFLRRKMAL
Trigger: CAGCGCCATCTTCCGTCTCAAAAAGACATGGCTCAAAGTTTCTAAGCAGACGAAATCTTTGCTTGACAAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 72 bp TGCCCTTGCGCTGATGTCCTCGTTTCGGATAATTTCTaGAGCAATGAAGTTACTGACATGGTTGAAGTGTTT +
Preference number: 6 (lower is better)
Translates to: CPCADVLVSDNF*SNEVTDMVEVF
Trigger: AAACACTTCAACCATGTCAGTAACTTCATTGCTTCAGAAATTATCCGAAACGAGGACATCAGCGCAAGGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp TCCTCATCATCAGCAGAACCGGCTTTGTTGCTGGATTaGATACGATCATTGTCCTTGATCAGGTTTGTAATA +
Preference number: 6 (lower is better)
Translates to: SSSSAEPALLLD*IRSLSLIRFVI
Trigger: TATTACAAACCTGATCAAGGACAATGATCGTATCCAATCCAGCAACAAAGCCGGTTCTGCTGATGATGAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp TTGGAATTTTCTTCAAAGGCATTCATCATGAGCCCATaGCAGCGGATATTATCCACGCACTGGATGATGTCA +
Preference number: 6 (lower is better)
Translates to: LEFSSKAFIMSP*QRILSTHWMMS
Trigger: TGACATCATCCAGTGCGTGGATAATATCCGCTGCAATGGGCTCATGATGAATGCCTTTGAAGAAAATTCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 90 bp CTGAGGTTCTTAAATCTGCCATCTGATGACACAAGCTTTTGGAGCTaGTCAAGCAAAGATTTCGTCTGCTTAGAAACTTTGAGCCATGTC +
Preference number: 6 (lower is better)
Translates to: LRFLNLPSDDTSFWS*SSKDFVCLETLSHV
Trigger: GACATGGCTCAAAGTTTCTAAGCAGACGAAATCTTTGCTTGACAAGCTCCAAAAGCTTGTGTCATCAGATGGCAGATTTAAGAACCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 72 bp GGAGCGAAGACTCATACAGGCTTTCTTCGTCCAACATaGAAGATTCATCCAGTAAGTACTGAATTACCTTTG +
Preference number: 6 (lower is better)
Translates to: GAKTHTGFLRPT*KIHPVSTELPL
Trigger: CAAAGGTAATTCAGTACTTACTGGATGAATCTTTCATGTTGGACGAAGAAAGCCTGTATGAGTCTTCGCTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CCA 72 bp AGGTTCTTAAATCTGCCATCTGATGACACAAGCTTTTaGAGCTTGTCAAGCAAAGATTTCGTCTGCTTAGAA +
Preference number: 6 (lower is better)
Translates to: RFLNLPSDDTSF*SLSSKDFVCLE
Trigger: TTCTAAGCAGACGAAATCTTTGCTTGACAAGCTCCAAAAGCTTGTGTCATCAGATGGCAGATTTAAGAACCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS TCA 72 bp GGATCTGAAGCACTTTGCAAGAATTCATGGTTTTGCTaGAGCGAATGTCAACATCATCACAATATAAGGAAG +
Preference number: 6 (lower is better)
Translates to: GSEALCKNSWFC*SECQHHHNIRK
Trigger: CTTCCTTATATTGTGATGATGTTGACATTCGCTTCAGCAAAACCATGAATTCTTGCAAAGTGCTTCAGATCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6
CDS CAA 72 bp TTAAATCTGCCATCTGATGACACAAGCTTTTGGAGCTaGTCAAGCAAAGATTTCGTCTGCTTAGAAACTTTG +
Preference number: 6 (lower is better)
Translates to: LNLPSDDTSFWS*SSKDFVCLETL
Trigger: CAAAGTTTCTAAGCAGACGAAATCTTTGCTTGACAAGCTCCAAAAGCTTGTGTCATCAGATGGCAGATTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034912.6