RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RASEF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043003

Ensembl transcript IDs: ENSMUST00000058292.13, ENSMUST00000102837.3, ENSMUST00000222414.2

Found 169 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTAGTGCCAACTCCCTTCTTCCCCCAGCCTCTGGCAGTCACTATGTaGGATACCTGTTGGTGGCATAGTTCTCCCAGTAGTATGTATTAT +
Preference number: 1 (lower is better)
Translates to: LVPTPFFPQPLAVTM*DTCWWHSSPSSMYY
Trigger: ATAATACATACTACTGGGAGAACTATGCCACCAACAGGTATCTCACATAGTGACTGCCAGAGGCTGGGGGAAGAAGGGAGTTGGCACTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR TCA 90 bp TTTTCACTTAATGATTTAAGCCACAGACTTCACAGTGGTCCTTCCTaGCTGTGGACCACTGCACCCTTCCCCCTTCTTAAGATGCTACAG +
Preference number: 1 (lower is better)
Translates to: FSLNDLSHRLHSGPS*LWTTAPFPLLKMLQ
Trigger: CTGTAGCATCTTAAGAAGGGGGAAGGGTGCAGTGGTCCACAGTCAGGAAGGACCACTGTGAAGTCTGTGGCTTAAATCATTAAGTGAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR CCA 90 bp TTTTTGTCGGCCCATCCTGAGTCAGATAGTGAAGCTTCTGACTCTTaGAAGACATTTTGGTCAGAAGGCACTGCAGGTTCCAGGAGAAAA +
Preference number: 1 (lower is better)
Translates to: FLSAHPESDSEASDS*KTFWSEGTAGSRRK
Trigger: TTTTCTCCTGGAACCTGCAGTGCCTTCTGACCAAAATGTCTTCCAAGAGTCAGAAGCTTCACTATCTGACTCAGGATGGGCCGACAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR TCA 90 bp GGTGAGACTAATAGCAAACTTCTAACTGTGACATATATTACAAAATaGCCACCACCTCAACCTGTGTGCCAATTTCTCTGGCCATTCCTC +
Preference number: 1 (lower is better)
Translates to: GETNSKLLTVTYITK*PPPQPVCQFLWPFL
Trigger: GAGGAATGGCCAGAGAAATTGGCACACAGGTTGAGGTGGTGGTCATTTTGTAATATATGTCACAGTTAGAAGTTTGCTATTAGTCTCACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR TCA 90 bp ATTCTATGTGTGTGGACATATCATTTGTTCACTAGAACACACATATaGAGGTTAGAGAACCACTTTCAGGAGACAGTTCTGCCCTTCCAC +
Preference number: 1 (lower is better)
Translates to: ILCVWTYHLFTRTHI*RLENHFQETVLPFH
Trigger: GTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTTCTCTAACCTTCATATGTGTGTTCTAGTGAACAAATGATATGTCCACACACATAGAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCCACAGTGGTCCTTCCTaGCTGTGGACCACTGCACCC +
Preference number: 2 (lower is better)
Translates to: LLPGRCHETVAILLRRLTHSGPS*LWTTAP
Trigger: GGGTGCAGTGGTCCACAGTCAGGAAGGACCACTGTG...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCGCCAGGCAGATGCCATaGGACTGTGGCCATCCTCCT +
Preference number: 2 (lower is better)
Translates to: RQFCPSTVGSGTNLELASARQMP*DCGHPP
Trigger: AGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGC...GCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCCTGGCAGTCACTATGTaGGATACCTGTTGGTGGCAT +
Preference number: 2 (lower is better)
Translates to: LLPGRCHETVAILLRRLTLAVTM*DTCWWH
Trigger: ATGCCACCAACAGGTATCTCACATAGTGACTGCCAG...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CCA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCTCTTCCCCCAGCCTCTaGCAGTCACTATGTGAGATA +
Preference number: 2 (lower is better)
Translates to: LLPGRCHETVAILLRRLTSSPSL*QSLCEI
Trigger: TATCTCACATAGTGACTGCCAGAGGCTGGGGGAAGA...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCGAAGCAAGGACTTTGTaGACACAGAACAACTGGGCT +
Preference number: 2 (lower is better)
Translates to: LLPGRCHETVAILLRRLTEARTL*TQNNWA
Trigger: AGCCCAGTTGTTCTGTGTTCACAAAGTCCTTGCTTC...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCCTGGCAGTCACTATGTaGGATACCTGTTGGTGGCAT +
Preference number: 2 (lower is better)
Translates to: RQFCPSTVGSGTNLELASLAVTM*DTCWWH
Trigger: ATGCCACCAACAGGTATCTCACATAGTGACTGCCAG...GCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR GCA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCCCCAGTGTCATATTATaGACTGCTTCATGGAGAGCC +
Preference number: 2 (lower is better)
Translates to: LLPGRCHETVAILLRRLTPSVIL*TASWRA
Trigger: GGCTCTCCATGAAGCAGTGCATAATATGACACTGGG...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CCA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCTCTTCCCCCAGCCTCTaGCAGTCACTATGTGAGATA +
Preference number: 2 (lower is better)
Translates to: RQFCPSTVGSGTNLELASSSPSL*QSLCEI
Trigger: TATCTCACATAGTGACTGCCAGAGGCTGGGGGAAGA...GCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATACACAGTGGTCCTTCCTaGCTGTGGACCACTGCACCC +
Preference number: 2 (lower is better)
Translates to: NWFRPLETCFCRPILSQIHSGPS*LWTTAP
Trigger: GGGTGCAGTGGTCCACAGTCAGGAAGGACCACTGTG...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR GCA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCCAGGCTAAGCTGAGGTaGCAAATGAAACCATTCATG +
Preference number: 2 (lower is better)
Translates to: LLPGRCHETVAILLRRLTQAKLR*QMKPFM
Trigger: CATGAATGGTTTCATTTGGCACCTCAGCTTAGCCTG...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR GCA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCTTGGTCAGAAGGCACTaGAGGTTCCAGGAGAAAAAC +
Preference number: 2 (lower is better)
Translates to: RQFCPSTVGSGTNLELASLVRRH*RFQEKN
Trigger: GTTTTTCTCCTGGAACCTGCAGTGCCTTCTGACCAA...GCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CCA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCGGGAACATTGTAATGTaGCCTGAACAGGCACCATGT +
Preference number: 2 (lower is better)
Translates to: RQFCPSTVGSGTNLELASGNIVM*PEQAPC
Trigger: ACATGGTGCCTGTTCAGGCCACATTACAATGTTCCC...GCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR CAA 90 bp TGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCTaGTGCAACAAGTACTTGTACTTCCTGAGACACCTCACTAGCCTA +
Preference number: 2 (lower is better)
Translates to: CPSTVGSGTNLELAS*CNKYLYFLRHLTSL
Trigger: TAGGCTAGTGAGGTGTCTCAGGAAGTACAAGTACTTGTTGCACAAGCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR CAA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTaGGCAAGCTTGTGCAACAAGTACTTGTACTTCCTGAGACACCTC +
Preference number: 2 (lower is better)
Translates to: RQFCPSTVGSGTNLE*ASLCNKYLYFLRHL
Trigger: GAGGTGTCTCAGGAAGTACAAGTACTTGTTGCACAAGCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCAAGCCTAGATCTATATaGACCAAGGTATCTGAGTCT +
Preference number: 2 (lower is better)
Translates to: RQFCPSTVGSGTNLELASKPRSI*TKVSES
Trigger: AGACTCAGATACCTTGGTTCATATAGATCTAGGCTT...GCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR GCA 90 bp AACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTCAGGCTAAGCTGAGGTaGCAAATGAAACCATTCATG +
Preference number: 2 (lower is better)
Translates to: NHFQETVLPFHCGVRYKSQAKLR*QMKPFM
Trigger: CATGAATGGTTTCATTTGGCACCTCAGCTTAGCCTG...AGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAACAATTGGCCAGGCTGTaGTTCCTCAGATCCCAGTGT +
Preference number: 2 (lower is better)
Translates to: TPGRTSALIIHPWLQRIEQLARL*FLRSQC
Trigger: ACACTGGGATCTGAGGAATCACAGCCTGGCCAATTG...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR GCA 90 bp TTGTCGGCCCATCCTGAGTCAGATAGTGAAGCTTCTGACTCTTGGAAGACATTTCCCAGTGTCATATTATaGACTGCTTCATGGAGAGCC +
Preference number: 2 (lower is better)
Translates to: LSAHPESDSEASDSWKTFPSVIL*TASWRA
Trigger: GGCTCTCCATGAAGCAGTGCATAATATGACACTGGG...AAATGTCTTCCAAGAGTCAGAAGCTTCACTATCTGACTCAGGATGGGCCGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAACTTGAAGTTAGGTGCTaGGGGGCTGGCATTATGCTA +
Preference number: 2 (lower is better)
Translates to: TPGRTSALIIHPWLQRIELEVRC*GAGIML
Trigger: TAGCATAATGCCAGCCCCTCAGCACCTAACTTCAAG...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR GCA 90 bp AACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTTGGTCCTCTTTTAGATaGAGCACATTCCAAAGCTAT +
Preference number: 2 (lower is better)
Translates to: NHFQETVLPFHCGVRYKSWSSFR*STFQSY
Trigger: ATAGCTTTGGAATGTGCTGCATCTAAAAGAGGACCA...AGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CCA 90 bp AACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTTACTTGTTTTCCAGATaGGAACATTGTAATGTGGCC +
Preference number: 2 (lower is better)
Translates to: NHFQETVLPFHCGVRYKSYLFSR*EHCNVA
Trigger: GGCCACATTACAATGTTCCCATCTGGAAAACAAGTA...AGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CCA 90 bp AACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGAAGCTTCTGACTCTTaGAAGACATTTTGGTCAGAA +
Preference number: 2 (lower is better)
Translates to: NHFQETVLPFHCGVRYKSEASDS*KTFWSE
Trigger: TTCTGACCAAAATGTCTTCCAAGAGTCAGAAGCTTC...AGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATACATTGTAATGTGGCCTaGACAGGCACCATGTTATCA +
Preference number: 2 (lower is better)
Translates to: NWFRPLETCFCRPILSQIHCNVA*TGTMLS
Trigger: TGATAACATGGTGCCTGTTCAGGCCACATTACAATG...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp AACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTATCCTTTTCAAATACTaGGTTTGGTGGCTTTTAGCA +
Preference number: 2 (lower is better)
Translates to: NHFQETVLPFHCGVRYKSILFKY*VWWLLA
Trigger: TGCTAAAAGCCACCAAACTCAGTATTTGAAAAGGAT...AGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR GCA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAATTGGTCAGAAGGCACTaGAGGTTCCAGGAGAAAAAC +
Preference number: 2 (lower is better)
Translates to: TPGRTSALIIHPWLQRIELVRRH*RFQEKN
Trigger: GTTTTTCTCCTGGAACCTGCAGTGCCTTCTGACCAA...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR GCA 90 bp CCTGTGTGCCAATTTCTCTGGCCATTCCTCACAATCAATGTATTCTTTTTAATCTTCAGGAGACAGTTCTaGCCTTCCACTGTGGGGTCA +
Preference number: 2 (lower is better)
Translates to: PVCQFLWPFLTINVFFLIFRRQF*PSTVGS
Trigger: TGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAA...GATTAAAAAGAATACATTGATTGTGAGGAATGGCCAGAGAAATTGGCACACAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CCA 90 bp AACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTCGATTATTTATGTTCTaGGTAAGCTATTCAAAGCCT +
Preference number: 2 (lower is better)
Translates to: NHFQETVLPFHCGVRYKSRLFMF*VSYSKP
Trigger: AGGCTTTGAATAGCTTACCCAGAACATAAATAATCG...AGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp CCTGTGTGCCAATTTCTCTGGCCATTCCTCACAATCAATGTATTCTTTTTAATCGAAGCAAGGACTTTGTaGACACAGAACAACTGGGCT +
Preference number: 2 (lower is better)
Translates to: PVCQFLWPFLTINVFFLIEARTL*TQNNWA
Trigger: AGCCCAGTTGTTCTGTGTTCACAAAGTCCTTGCTTC...GATTAAAAAGAATACATTGATTGTGAGGAATGGCCAGAGAAATTGGCACACAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp TTGTCGGCCCATCCTGAGTCAGATAGTGAAGCTTCTGACTCTTGGAAGACATTTATCCTTTTCAAATACTaGGTTTGGTGGCTTTTAGCA +
Preference number: 2 (lower is better)
Translates to: LSAHPESDSEASDSWKTFILFKY*VWWLLA
Trigger: TGCTAAAAGCCACCAAACTCAGTATTTGAAAAGGAT...AAATGTCTTCCAAGAGTCAGAAGCTTCACTATCTGACTCAGGATGGGCCGACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CCA 90 bp CCTGTGTGCCAATTTCTCTGGCCATTCCTCACAATCAATGTATTCTTTTTAATCGGTCAGGTACAAATCTaGAGTTGGCAAGCTTGTGCA +
Preference number: 2 (lower is better)
Translates to: PVCQFLWPFLTINVFFLIGQVQI*SWQACA
Trigger: TGCACAAGCTTGCCAACTCCAGATTTGTACCTGACC...GATTAAAAAGAATACATTGATTGTGAGGAATGGCCAGAGAAATTGGCACACAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CCA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAAGTGTGCCAATTTCTCTaGCCATTCCTCACAATCAAT +
Preference number: 2 (lower is better)
Translates to: TPGRTSALIIHPWLQRIEVCQFL*PFLTIN
Trigger: ATTGATTGTGAGGAATGGCCAGAGAAATTGGCACAC...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR TCA 90 bp CAAAGTTTTAAAGACTGGTCCTCTTTTAGATGCAGCACATTCCAAAGCTATGCTCATTGTAATGTGGCCTaGACAGGCACCATGTTATCA +
Preference number: 2 (lower is better)
Translates to: QSFKDWSSFRCSTFQSYAHCNVA*TGTMLS
Trigger: TGATAACATGGTGCCTGTTCAGGCCACATTACAATG...AGCATAGCTTTGGAATGTGCTGCATCTAAAAGAGGACCAGTCTTTAAAACTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CCA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAACAAAGTTTTAAAGACTaGTCCTCTTTTAGATGCAGC +
Preference number: 2 (lower is better)
Translates to: TPGRTSALIIHPWLQRIEQSFKD*SSFRCS
Trigger: GCTGCATCTAAAAGAGGACCAGTCTTTAAAACTTTG...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CCA 90 bp GAAAATAAGCCTTTACCCTTAACCTCAATTTTAACATTAGAGGAGGAAGGACAGGAAGCTTCTGACTCTTaGAAGACATTTTGGTCAGAA +
Preference number: 2 (lower is better)
Translates to: ENKPLPLTSILTLEEEGQEASDS*KTFWSE
Trigger: TTCTGACCAAAATGTCTTCCAAGAGTCAGAAGCTTC...CTGTCCTTCCTCCTCTAATGTTAAAATTGAGGTTAAGGGTAAAGGCTTATTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR GCA 72 bp AGCAAGCTTCAGGTTGCTGAGAGCGGGGAAGAACAGTaGAATTGGCCAGGCTGTGATTCCTCAGATCCCAGT +
Preference number: 3 (lower is better)
Translates to: SKLQVAESGEEQ*NWPGCDSSDPS
Trigger: ACTGGGATCTGAGGAATCACAGCCTGGCCAATTGCACTGTTCTTCCCCGCTCTCAGCAACCTGAAGCTTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR TCA 72 bp ACTCCCTTCTTCCCCCAGCCTCTGGCAGTCACTATGTaGGATACCTGTTGGTGGCATAGTTCTCCCAGTAGT +
Preference number: 3 (lower is better)
Translates to: TPFFPQPLAVTM*DTCWWHSSPSS
Trigger: ACTACTGGGAGAACTATGCCACCAACAGGTATCTCACATAGTGACTGCCAGAGGCTGGGGGAAGAAGGGAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR TCA 72 bp GTGGCTTTTAGCACGACTACTGCCAGGCAGATGCCATaGGACTGTGGCCATCCTCCTAAGAAGGTTGACCAT +
Preference number: 3 (lower is better)
Translates to: VAFSTTTARQMP*DCGHPPKKVDH
Trigger: ATGGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAGTCGTGCTAAAAGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR CCA 72 bp GCTTCATGGAGAGCCAGGGTCCCACAGTCAGTAATCTaGAAGCAAGGACTTTGTGAACACAGAACAACTGGG +
Preference number: 3 (lower is better)
Translates to: ASWRARVPQSVI*KQGLCEHRTTG
Trigger: CCCAGTTGTTCTGTGTTCACAAAGTCCTTGCTTCCAGATTACTGACTGTGGGACCCTGGCTCTCCATGAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR CCA 72 bp GAACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTaGGGTCAGGTACAAATCTGGAGTTGGCAAGCTTGT +
Preference number: 3 (lower is better)
Translates to: EPLSGDSSALPL*GQVQIWSWQAC
Trigger: ACAAGCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CAA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCACTAGAAACATGTTTTaGTCGGCCCATCCTGAGTCA +
Preference number: 3 (lower is better)
Translates to: RQFCPSTVGSGTNLELASTRNMF*SAHPES
Trigger: TGACTCAGGATGGGCCGACAAAAACATGTTTCTAGT...GCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR TCA 72 bp AATGATTTAAGCCACAGACTTCACAGTGGTCCTTCCTaGCTGTGGACCACTGCACCCTTCCCCCTTCTTAAG +
Preference number: 3 (lower is better)
Translates to: NDLSHRLHSGPS*LWTTAPFPLLK
Trigger: CTTAAGAAGGGGGAAGGGTGCAGTGGTCCACAGTCAGGAAGGACCACTGTGAAGTCTGTGGCTTAAATCATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR CCA 72 bp GCCCATCCTGAGTCAGATAGTGAAGCTTCTGACTCTTaGAAGACATTTTGGTCAGAAGGCACTGCAGGTTCC +
Preference number: 3 (lower is better)
Translates to: AHPESDSEASDS*KTFWSEGTAGS
Trigger: GGAACCTGCAGTGCCTTCTGACCAAAATGTCTTCCAAGAGTCAGAAGCTTCACTATCTGACTCAGGATGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR GCA 72 bp CCTGAACAGGCACCATGTTATCAGGCTAAGCTGAGGTaGCAAATGAAACCATTCATGCTACCTTACACCAGC +
Preference number: 3 (lower is better)
Translates to: PEQAPCYQAKLR*QMKPFMLPYTS
Trigger: GCTGGTGTAAGGTAGCATGAATGGTTTCATTTGGCACCTCAGCTTAGCCTGATAACATGGTGCCTGTTCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR CCA 72 bp AGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTaGAGTTGGCAAGCTTGTGCAACAAGTACTTGTACT +
Preference number: 3 (lower is better)
Translates to: SSALPLWGQVQI*SWQACATSTCT
Trigger: AGTACAAGTACTTGTTGCACAAGCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CAA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATAATCCTCCTAAGAAGGTaGACCATTAGTGCCAACTCC +
Preference number: 3 (lower is better)
Translates to: NWFRPLETCFCRPILSQIILLRR*TISANS
Trigger: GGAGTTGGCACTAATGGTCAACCTTCTTAGGAGGAT...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR TCA 72 bp AAGGCACTGCAGGTTCCAGGAGAAAAACAAAACCAGTaGGGAGCAGTCACACTAGTAAGGATAGTGTCCTTT +
Preference number: 3 (lower is better)
Translates to: KALQVPGEKQNQ*GAVTLVRIVSF
Trigger: AAAGGACACTATCCTTACTAGTGTGACTGCTCCTCACTGGTTTTGTTTTTCTCCTGGAACCTGCAGTGCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CAA 90 bp CTAAGCTTGTCAGTCATGTCACCTAGACAACTTTCTGGTAAACACAGCTGTTCTATCCTCCTAAGAAGGTaGACCATTAGTGCCAACTCC +
Preference number: 3 (lower is better)
Translates to: LSLSVMSPRQLSGKHSCSILLRR*TISANS
Trigger: GGAGTTGGCACTAATGGTCAACCTTCTTAGGAGGAT...AGAACAGCTGTGTTTACCAGAAAGTTGTCTAGGTGACATGACTGACAAGCTTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR CCA 72 bp CAACTTACTTGTTTTCCAGATGGGAACATTGTAATGTaGCCTGAACAGGCACCATGTTATCAGGCTAAGCTG +
Preference number: 3 (lower is better)
Translates to: QLTCFPDGNIVM*PEQAPCYQAKL
Trigger: CAGCTTAGCCTGATAACATGGTGCCTGTTCAGGCCACATTACAATGTTCCCATCTGGAAAACAAGTAAGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR CCA 72 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTaGTTACAGAGAATAGAAGACAAAAGGACTTTGGGG +
Preference number: 3 (lower is better)
Translates to: TPGRTSALIIHP*LQRIEDKRTLG
Trigger: CCCCAAAGTCCTTTTGTCTTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CAA 90 bp CCTGTGTGCCAATTTCTCTGGCCATTCCTCACAATCAATGTATTCTTTTTAATCCTGGAGTTGGCAAGCTaGTGCAACAAGTACTTGTAC +
Preference number: 3 (lower is better)
Translates to: PVCQFLWPFLTINVFFLILELAS*CNKYLY
Trigger: GTACAAGTACTTGTTGCACAAGCTTGCCAACTCCAG...GATTAAAAAGAATACATTGATTGTGAGGAATGGCCAGAGAAATTGGCACACAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR TCA 72 bp GTGTGGACATATCATTTGTTCACTAGAACACACATATaGAGGTTAGAGAACCACTTTCAGGAGACAGTTCTG +
Preference number: 3 (lower is better)
Translates to: VWTYHLFTRTHI*RLENHFQETVL
Trigger: CAGAACTGTCTCCTGAAAGTGGTTCTCTAACCTTCATATGTGTGTTCTAGTGAACAAATGATATGTCCACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR TCA 72 bp AATAGCAAACTTCTAACTGTGACATATATTACAAAATaGCCACCACCTCAACCTGTGTGCCAATTTCTCTGG +
Preference number: 3 (lower is better)
Translates to: NSKLLTVTYITK*PPPQPVCQFLW
Trigger: CCAGAGAAATTGGCACACAGGTTGAGGTGGTGGTCATTTTGTAATATATGTCACAGTTAGAAGTTTGCTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR-3UTR CAA 90 bp GAAAATAAGCCTTTACCCTTAACCTCAATTTTAACATTAGAGGAGGAAGGACAGGTGTGGACATATCATTaGTTCACTAGAACACACATA +
Preference number: 3 (lower is better)
Translates to: ENKPLPLTSILTLEEEGQVWTYH*FTRTHI
Trigger: TATGTGTGTTCTAGTGAACAAATGATATGTCCACAC...CTGTCCTTCCTCCTCTAATGTTAAAATTGAGGTTAAGGGTAAAGGCTTATTTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR TCA 72 bp ATGTTCTGGGTAAGCTATTCAAAGCCTAGATCTATATaGACCAAGGTATCTGAGTCTCTTACTAAGAATAAT +
Preference number: 3 (lower is better)
Translates to: MFWVSYSKPRSI*TKVSESLTKNN
Trigger: ATTATTCTTAGTAAGAGACTCAGATACCTTGGTTCATATAGATCTAGGCTTTGAATAGCTTACCCAGAACAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCGCTCACTTAGCTGAATaGCCGCCTTGTCCTGGGCTC +
Preference number: 4 (lower is better)
Translates to: RQFCPSTVGSGTNLELASAHLAE*PPCPGL
Trigger: GAGCCCAGGACAAGGCGGCCATTCAGCTAAGTGAGC...GCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR TCA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCTTGGCTCCACAAGGGTaGTGTTCTGGTACAGGGTAC +
Preference number: 4 (lower is better)
Translates to: LLPGRCHETVAILLRRLTLAPQG*CSGTGY
Trigger: GTACCCTGTACCAGAACATCACCCTTGTGGAGCCAA...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058292.13
CDS-3UTR TCA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCCTGTGCTCTGGAGTTTaGTCTCACGGAGAAAGTTCC +
Preference number: 4 (lower is better)
Translates to: RQFCPSTVGSGTNLELASLCSGV*SHGESS
Trigger: GGAACTTTCTCCGTGAGATCAAACTCCAGAGCACAG...GCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058292.13
CDS-3UTR TCA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCGCTGTATCCCAGAGCTaGAGAACTGTTTGTTCACCA +
Preference number: 4 (lower is better)
Translates to: LLPGRCHETVAILLRRLTAVSQS*RTVCSP
Trigger: TGGTGAACAAACAGTTCTTCAGCTCTGGGATACAGC...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATAGCAGAGCCCTGGGGCTaGCAGTGTAAGACAGAGGCC +
Preference number: 4 (lower is better)
Translates to: NWFRPLETCFCRPILSQIAEPWG*QCKTEA
Trigger: GGCCTCTGTCTTACACTGGCAGCCCCAGGGCTCTGC...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCCTCTCTTCACTGCAATaGCCAGGTTTTCCATCTCTG +
Preference number: 4 (lower is better)
Translates to: LLPGRCHETVAILLRRLTLSSLQ*PGFPSL
Trigger: CAGAGATGGAAAACCTGGCCATTGCAGTGAAGAGAG...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058292.13
CDS-3UTR GCA 90 bp CTAAGCTTGTCAGTCATGTCACCTAGACAACTTTCTGGTAAACACAGCTGTTCTGCAGAGCCCTGGGGCTaGCAGTGTAAGACAGAGGCC +
Preference number: 4 (lower is better)
Translates to: LSLSVMSPRQLSGKHSCSAEPWG*QCKTEA
Trigger: GGCCTCTGTCTTACACTGGCAGCCCCAGGGCTCTGC...AGAACAGCTGTGTTTACCAGAAAGTTGTCTAGGTGACATGACTGACAAGCTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCCCATCATTACTGTCATaGAGCTTCCGGTTAGCTGTT +
Preference number: 4 (lower is better)
Translates to: RQFCPSTVGSGTNLELASPSLLS*SFRLAV
Trigger: AACAGCTAACCGGAAGCTGCATGACAGTAATGATGG...GCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCGTAAGTGTTTTCCAGTaGACTCCTGAGGCCATCATT +
Preference number: 4 (lower is better)
Translates to: RQFCPSTVGSGTNLELASVSVFQ*TPEAII
Trigger: AATGATGGCCTCAGGAGTGCACTGGAAAACACTTAC...GCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATATCACCAGCAGAGCCCTaGGGCTGCCAGTGTAAGACA +
Preference number: 4 (lower is better)
Translates to: NWFRPLETCFCRPILSQISPAEP*GCQCKT
Trigger: TGTCTTACACTGGCAGCCCCAGGGCTCTGCTGGTGA...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR CAA 72 bp TGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTaGGCAAGCTTGTGCAACAAGTACTTGTACTTCCTG +
Preference number: 4 (lower is better)
Translates to: CPSTVGSGTNLE*ASLCNKYLYFL
Trigger: CAGGAAGTACAAGTACTTGTTGCACAAGCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCGGCTACGTTTGTCTGTaGTTCCAAAAGTTCTTTCTT +
Preference number: 4 (lower is better)
Translates to: LLPGRCHETVAILLRRLTGYVCL*FQKFFL
Trigger: AAGAAAGAACTTTTGGAAGCACAGACAAACGTAGCC...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp AGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCACAAGGGTGATGTTCTaGTACAGGGTACTAACTTGT +
Preference number: 4 (lower is better)
Translates to: RQFCPSTVGSGTNLELASTRVMF*YRVLTC
Trigger: ACAAGTTAGTACCCTGTACCAGAACATCACCCTTGT...GCTTGCCAACTCCAGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058292.13
3UTR CAA 72 bp ACTGTGGGGTCAGGTACAAATCTGGAGTTGGCAAGCTaGTGCAACAAGTACTTGTACTTCCTGAGACACCTC +
Preference number: 4 (lower is better)
Translates to: TVGSGTNLELAS*CNKYLYFLRHL
Trigger: GAGGTGTCTCAGGAAGTACAAGTACTTGTTGCACAAGCTTGCCAACTCCAGATTTGTACCTGACCCCACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR TCA 90 bp AACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTGTTCTTCATCTGCAGTaGCTTTTTAGAAGTAGACCC +
Preference number: 4 (lower is better)
Translates to: NHFQETVLPFHCGVRYKSVLHLQ*LFRSRP
Trigger: GGGTCTACTTCTAAAAAGTCACTGCAGATGAAGAAC...AGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCCAACAGTTCTTCATCTaGAGTGACTTTTTAGAAGTA +
Preference number: 4 (lower is better)
Translates to: LLPGRCHETVAILLRRLTQQFFI*SDFLEV
Trigger: TACTTCTAAAAAGTCACTGCAGATGAAGAACTGTTG...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp CAAAGTTTTAAAGACTGGTCCTCTTTTAGATGCAGCACATTCCAAAGCTATGCTGCTCACTTAGCTGAATaGCCGCCTTGTCCTGGGCTC +
Preference number: 4 (lower is better)
Translates to: QSFKDWSSFRCSTFQSYAAHLAE*PPCPGL
Trigger: GAGCCCAGGACAAGGCGGCCATTCAGCTAAGTGAGC...AGCATAGCTTTGGAATGTGCTGCATCTAAAAGAGGACCAGTCTTTAAAACTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp AACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTTTCCGGTTAGCTGTTTaGAGGATTTCAATTTGCCTC +
Preference number: 4 (lower is better)
Translates to: NHFQETVLPFHCGVRYKSFRLAV*RISICL
Trigger: GAGGCAAATTGAAATCCTCCAAACAGCTAACCGGAA...AGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAACAGCTTCCACCACGTTaGAGCCATCTTTGGCACTTG +
Preference number: 4 (lower is better)
Translates to: TPGRTSALIIHPWLQRIEQLPPR*SHLWHL
Trigger: CAAGTGCCAAAGATGGCTCCAACGTGGTGGAAGCTG...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR TCA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATAGCTGTATCCCAGAGCTaGAGAACTGTTTGTTCACCA +
Preference number: 4 (lower is better)
Translates to: NWFRPLETCFCRPILSQIAVSQS*RTVCSP
Trigger: TGGTGAACAAACAGTTCTTCAGCTCTGGGATACAGC...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp TTGTCGGCCCATCCTGAGTCAGATAGTGAAGCTTCTGACTCTTGGAAGACATTTGTAAGTGTTTTCCAGTaGACTCCTGAGGCCATCATT +
Preference number: 4 (lower is better)
Translates to: LSAHPESDSEASDSWKTFVSVFQ*TPEAII
Trigger: AATGATGGCCTCAGGAGTGCACTGGAAAACACTTAC...AAATGTCTTCCAAGAGTCAGAAGCTTCACTATCTGACTCAGGATGGGCCGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR TCA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAATTTCCAGTGCACTCCTaGGGCCATCATTACTGTCAT +
Preference number: 4 (lower is better)
Translates to: TPGRTSALIIHPWLQRIEFPVHS*GHHYCH
Trigger: ATGACAGTAATGATGGCCTCAGGAGTGCACTGGAAA...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR TCA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAATCCACCATGTCTGTCTaGAGTGAAAGAGCTGAGATG +
Preference number: 4 (lower is better)
Translates to: TPGRTSALIIHPWLQRIESTMSV*SERAEM
Trigger: CATCTCAGCTCTTTCACTTCAGACAGACATGGTGGA...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp TTGTCGGCCCATCCTGAGTCAGATAGTGAAGCTTCTGACTCTTGGAAGACATTTTGGAGGATTTCAATTTaGCTCTCAAGACTGCTTCGA +
Preference number: 4 (lower is better)
Translates to: LSAHPESDSEASDSWKTFWRISI*LSRLLR
Trigger: TCGAAGCAGTCTTGAGAGGCAAATTGAAATCCTCCA...AAATGTCTTCCAAGAGTCAGAAGCTTCACTATCTGACTCAGGATGGGCCGACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR TCA 90 bp CTAAGCTTGTCAGTCATGTCACCTAGACAACTTTCTGGTAAACACAGCTGTTCTATAGCAGTCTATGGATaGAAGCCACACTGGAAGACA +
Preference number: 4 (lower is better)
Translates to: LSLSVMSPRQLSGKHSCSIAVYG*KPHWKT
Trigger: TGTCTTCCAGTGTGGCTTTCATCCATAGACTGCTAT...AGAACAGCTGTGTTTACCAGAAAGTTGTCTAGGTGACATGACTGACAAGCTTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058292.13
CDS-3UTR GCA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAACCATCATTACTGTCATaGAGCTTCCGGTTAGCTGTT +
Preference number: 4 (lower is better)
Translates to: TPGRTSALIIHPWLQRIEPSLLS*SFRLAV
Trigger: AACAGCTAACCGGAAGCTGCATGACAGTAATGATGG...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp CCTGTGTGCCAATTTCTCTGGCCATTCCTCACAATCAATGTATTCTTTTTAATCCTCCTAAATCTCTCTTaGCCAGCTGTATCCCAGAGC +
Preference number: 4 (lower is better)
Translates to: PVCQFLWPFLTINVFFLILLNLS*PAVSQS
Trigger: GCTCTGGGATACAGCTGGGCAAGAGAGATTTAGGAG...GATTAAAAAGAATACATTGATTGTGAGGAATGGCCAGAGAAATTGGCACACAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp AACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTTCCATTGTTAAATCATaGATTTGCTTCTTCAATGCC +
Preference number: 4 (lower is better)
Translates to: NHFQETVLPFHCGVRYKSSIVKS*ICFFNA
Trigger: GGCATTGAAGAAGCAAATCCATGATTTAACAATGGA...AGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp GAAAATAAGCCTTTACCCTTAACCTCAATTTTAACATTAGAGGAGGAAGGACAGCAGCTTCCACCACGTTaGAGCCATCTTTGGCACTTG +
Preference number: 4 (lower is better)
Translates to: ENKPLPLTSILTLEEEGQQLPPR*SHLWHL
Trigger: CAAGTGCCAAAGATGGCTCCAACGTGGTGGAAGCTG...CTGTCCTTCCTCCTCTAATGTTAAAATTGAGGTTAAGGGTAAAGGCTTATTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
3UTR CAA 72 bp AACCCCAGGCAGAACGTCTGCATTAATAATACACCCTaGGTTACAGAGAATAGAAGACAAAAGGACTTTGGG +
Preference number: 4 (lower is better)
Translates to: NPRQNVCINNTP*VTENRRQKDFG
Trigger: CCCAAAGTCCTTTTGTCTTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR TCA 90 bp CCTGTGTGCCAATTTCTCTGGCCATTCCTCACAATCAATGTATTCTTTTTAATCTTTCCAGTGCACTCCTaGGGCCATCATTACTGTCAT +
Preference number: 4 (lower is better)
Translates to: PVCQFLWPFLTINVFFLIFPVHS*GHHYCH
Trigger: ATGACAGTAATGATGGCCTCAGGAGTGCACTGGAAA...GATTAAAAAGAATACATTGATTGTGAGGAATGGCCAGAGAAATTGGCACACAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR TCA 90 bp CAAAGTTTTAAAGACTGGTCCTCTTTTAGATGCAGCACATTCCAAAGCTATGCTTCCACCATGTCTGTCTaGAGTGAAAGAGCTGAGATG +
Preference number: 4 (lower is better)
Translates to: QSFKDWSSFRCSTFQSYASTMSV*SERAEM
Trigger: CATCTCAGCTCTTTCACTTCAGACAGACATGGTGGA...AGCATAGCTTTGGAATGTGCTGCATCTAAAAGAGGACCAGTCTTTAAAACTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATAGGCTACGTTTGTCTGTaGTTCCAAAAGTTCTTTCTT +
Preference number: 4 (lower is better)
Translates to: NWFRPLETCFCRPILSQIGYVCL*FQKFFL
Trigger: AAGAAAGAACTTTTGGAAGCACAGACAAACGTAGCC...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATATTTGCCTCTCAAGACTaGTTCGATCTTCTGTGTATT +
Preference number: 4 (lower is better)
Translates to: NWFRPLETCFCRPILSQIFASQD*FDLLCI
Trigger: AATACACAGAAGATCGAAGCAGTCTTGAGAGGCAAA...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp GAAAATAAGCCTTTACCCTTAACCTCAATTTTAACATTAGAGGAGGAAGGACAGCTCCTAAATCTCTCTTaGCCAGCTGTATCCCAGAGC +
Preference number: 4 (lower is better)
Translates to: ENKPLPLTSILTLEEEGQLLNLS*PAVSQS
Trigger: GCTCTGGGATACAGCTGGGCAAGAGAGATTTAGGAG...CTGTCCTTCCTCCTCTAATGTTAAAATTGAGGTTAAGGGTAAAGGCTTATTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp CTAAGCTTGTCAGTCATGTCACCTAGACAACTTTCTGGTAAACACAGCTGTTCTTTCCGGTTAGCTGTTTaGAGGATTTCAATTTGCCTC +
Preference number: 4 (lower is better)
Translates to: LSLSVMSPRQLSGKHSCSFRLAV*RISICL
Trigger: GAGGCAAATTGAAATCCTCCAAACAGCTAACCGGAA...AGAACAGCTGTGTTTACCAGAAAGTTGTCTAGGTGACATGACTGACAAGCTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATAATAGGAATAGTTCTGTaGGTTCCATCCTCAACCATA +
Preference number: 4 (lower is better)
Translates to: NWFRPLETCFCRPILSQIIGIVL*VPSSTI
Trigger: TATGGTTGAGGATGGAACCCACAGAACTATTCCTAT...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR TCA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATAGTCACATCTTGCTTTTaGCTTATTTGTCTTGATTGC +
Preference number: 4 (lower is better)
Translates to: NWFRPLETCFCRPILSQIVTSCF*LICLDC
Trigger: GCAATCAAGACAAATAAGTCAAAAGCAAGATGTGAC...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATAGTTAAATCATGGATTTaGTTCTTCAATGCCGTCACA +
Preference number: 4 (lower is better)
Translates to: NWFRPLETCFCRPILSQIVKSWI*FFNAVT
Trigger: TGTGACGGCATTGAAGAAGCAAATCCATGATTTAAC...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp TTGTCGGCCCATCCTGAGTCAGATAGTGAAGCTTCTGACTCTTGGAAGACATTTCAACAGTTCTTCATCTaGAGTGACTTTTTAGAAGTA +
Preference number: 4 (lower is better)
Translates to: LSAHPESDSEASDSWKTFQQFFI*SDFLEV
Trigger: TACTTCTAAAAAGTCACTGCAGATGAAGAACTGTTG...AAATGTCTTCCAAGAGTCAGAAGCTTCACTATCTGACTCAGGATGGGCCGACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR TCA 90 bp CTAAGCTTGTCAGTCATGTCACCTAGACAACTTTCTGGTAAACACAGCTGTTCTGTCACATCTTGCTTTTaGCTTATTTGTCTTGATTGC +
Preference number: 4 (lower is better)
Translates to: LSLSVMSPRQLSGKHSCSVTSCF*LICLDC
Trigger: GCAATCAAGACAAATAAGTCAAAAGCAAGATGTGAC...AGAACAGCTGTGTTTACCAGAAAGTTGTCTAGGTGACATGACTGACAAGCTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp CCTGTGTGCCAATTTCTCTGGCCATTCCTCACAATCAATGTATTCTTTTTAATCTGGAGGATTTCAATTTaGCTCTCAAGACTGCTTCGA +
Preference number: 4 (lower is better)
Translates to: PVCQFLWPFLTINVFFLIWRISI*LSRLLR
Trigger: TCGAAGCAGTCTTGAGAGGCAAATTGAAATCCTCCA...GATTAAAAAGAATACATTGATTGTGAGGAATGGCCAGAGAAATTGGCACACAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR TCA 90 bp GAAAATAAGCCTTTACCCTTAACCTCAATTTTAACATTAGAGGAGGAAGGACAGGTTCTTCATCTGCAGTaGCTTTTTAGAAGTAGACCC +
Preference number: 4 (lower is better)
Translates to: ENKPLPLTSILTLEEEGQVLHLQ*LFRSRP
Trigger: GGGTCTACTTCTAAAAAGTCACTGCAGATGAAGAAC...CTGTCCTTCCTCCTCTAATGTTAAAATTGAGGTTAAGGGTAAAGGCTTATTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAAACACTTTTGATTCTCTaGATTATCAACATCACGAAG +
Preference number: 4 (lower is better)
Translates to: TPGRTSALIIHPWLQRIETLLIL*IINITK
Trigger: CTTCGTGATGTTGATAATGCAGAGAATCAAAAGTGT...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp CTAAGCTTGTCAGTCATGTCACCTAGACAACTTTCTGGTAAACACAGCTGTTCTACACTTTTGATTCTCTaGATTATCAACATCACGAAG +
Preference number: 4 (lower is better)
Translates to: LSLSVMSPRQLSGKHSCSTLLIL*IINITK
Trigger: CTTCGTGATGTTGATAATGCAGAGAATCAAAAGTGT...AGAACAGCTGTGTTTACCAGAAAGTTGTCTAGGTGACATGACTGACAAGCTTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR GCA 90 bp CCTGTGTGCCAATTTCTCTGGCCATTCCTCACAATCAATGTATTCTTTTTAATCGTTAAATCATGGATTTaGTTCTTCAATGCCGTCACA +
Preference number: 4 (lower is better)
Translates to: PVCQFLWPFLTINVFFLIVKSWI*FFNAVT
Trigger: TGTGACGGCATTGAAGAAGCAAATCCATGATTTAAC...GATTAAAAAGAATACATTGATTGTGAGGAATGGCCAGAGAAATTGGCACACAGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp GAAAATAAGCCTTTACCCTTAACCTCAATTTTAACATTAGAGGAGGAAGGACAGGTATATAGCAGTCTATaGATGAAAGCCACACTGGAA +
Preference number: 4 (lower is better)
Translates to: ENKPLPLTSILTLEEEGQVYSSL*MKATLE
Trigger: TTCCAGTGTGGCTTTCATCCATAGACTGCTATATAC...CTGTCCTTCCTCCTCTAATGTTAAAATTGAGGTTAAGGGTAAAGGCTTATTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058292.13
CDS-3UTR CCA 90 bp GAAAATAAGCCTTTACCCTTAACCTCAATTTTAACATTAGAGGAGGAAGGACAGATAGGAATAGTTCTGTaGGTTCCATCCTCAACCATA +
Preference number: 4 (lower is better)
Translates to: ENKPLPLTSILTLEEEGQIGIVL*VPSSTI
Trigger: TATGGTTGAGGATGGAACCCACAGAACTATTCCTAT...CTGTCCTTCCTCCTCTAATGTTAAAATTGAGGTTAAGGGTAAAGGCTTATTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CCA 90 bp CAAAGTTTTAAAGACTGGTCCTCTTTTAGATGCAGCACATTCCAAAGCTATGCTTCCATTGTTAAATCATaGATTTGCTTCTTCAATGCC +
Preference number: 4 (lower is better)
Translates to: QSFKDWSSFRCSTFQSYASIVKS*ICFFNA
Trigger: GGCATTGAAGAAGCAAATCCATGATTTAACAATGGA...AGCATAGCTTTGGAATGTGCTGCATCTAAAAGAGGACCAGTCTTTAAAACTTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS TCA 90 bp CCTCTGCTTCGGCCTCGGCCACGTGCAGCTCCGCGCACAACGCGCTaGACTCCGCACGCTCCAGGCGCCCGGAGCCGTTCGTGTCGTAGG +
Preference number: 5 (lower is better)
Translates to: PLLRPRPRAAPRTTR*TPHAPGARSRSCRR
Trigger: CCTACGACACGAACGGCTCCGGGCGCCTGGAGCGTGCGGAGTTCAGCGCGTTGTGCGCGGAGCTGCACGTGGCCGAGGCCGAAGCAGAGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222414.2
CDS GCA 90 bp GTGTCGAGCCCCCTGAACACGGCCTCTGCTTCGGCCTCGGCCACGTaGAGCTCCGCGCACAACGCGCTGAACTCCGCACGCTCCAGGCGC +
Preference number: 5 (lower is better)
Translates to: VSSPLNTASASASAT*SSAHNALNSARSRR
Trigger: GCGCCTGGAGCGTGCGGAGTTCAGCGCGTTGTGCGCGGAGCTGCACGTGGCCGAGGCCGAAGCAGAGGCCGTGTTCAGGGGGCTCGACAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222414.2
CDS CCA 90 bp TGTTCTTTCCTGGGAATGAGTTGGGCCTCGTCTCCGAGGCGCGCATaGAAGTCCCGCCACGCGGGGCTCGGGCTCTCCGGCTCTGCCACT +
Preference number: 5 (lower is better)
Translates to: CSFLGMSWASSPRRA*KSRHAGLGLSGSAT
Trigger: AGTGGCAGAGCCGGAGAGCCCGAGCCCCGCGTGGCGGGACTTCCATGCGCGCCTCGGAGACGAGGCCCAACTCATTCCCAGGAAAGAACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222414.2
CDS TCA 90 bp GAGTTGCGCTTGTGTTCCCCTGAAACTCATTCTTGCAGAGACGCATaGGGAAGCTGGACTTTCCCACTGCGGCGTCGCCAGCCAGCACAA +
Preference number: 5 (lower is better)
Translates to: ELRLCSPETHSCRDA*GSWTFPLRRRQPAQ
Trigger: TTGTGCTGGCTGGCGACGCCGCAGTGGGAAAGTCCAGCTTCCTCATGCGTCTCTGCAAGAATGAGTTTCAGGGGAACACAAGCGCAACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS-3UTR CAA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCACTCCTAAATCTCTCTaGCCCAGCTGTATCCCAGAG +
Preference number: 5 (lower is better)
Translates to: LLPGRCHETVAILLRRLTTPKSL*PSCIPE
Trigger: CTCTGGGATACAGCTGGGCAAGAGAGATTTAGGAGT...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS TCA 90 bp CTGCGGCGTCGCCAGCCAGCACAATCTTGTAAGCCTTCTGAGATGTaGCCTTGGAGGTGTTATCCACCATGTCTGTCTGAAGTGAAAGAG +
Preference number: 5 (lower is better)
Translates to: LRRRQPAQSCKPSEM*PWRCYPPCLSEVKE
Trigger: CTCTTTCACTTCAGACAGACATGGTGGATAACACCTCCAAGGTCACATCTCAGAAGGCTTACAAGATTGTGCTGGCTGGCGACGCCGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS GCA 90 bp AAACTCATTCTTGCAGAGACGCATGAGGAAGCTGGACTTTCCCACTaGGGCGTCGCCAGCCAGCACAATCTTGTAAGCCTTCTGAGATGT +
Preference number: 5 (lower is better)
Translates to: KLILAETHEEAGLSH*GVASQHNLVSLLRC
Trigger: ACATCTCAGAAGGCTTACAAGATTGTGCTGGCTGGCGACGCCGCAGTGGGAAAGTCCAGCTTCCTCATGCGTCTCTGCAAGAATGAGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CCA 90 bp CTTGAATCCTCTGATCCATTTCCTCTTCCAGCTCACTTAGCTGAATaGCCGCCTTGTCCTGGGCTCTCTTCACTGCAATGGCCAGGTTTT +
Preference number: 5 (lower is better)
Translates to: LESSDPFPLPAHLAE*PPCPGLSSLQWPGF
Trigger: AAAACCTGGCCATTGCAGTGAAGAGAGCCCAGGACAAGGCGGCCATTCAGCTAAGTGAGCTGGAAGAGGAAATGGATCAGAGGATTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CCA 90 bp CCCGTGCAAGATGGAGAACAGCTTCCACCACGTTGGAGCCATCTTTaGCACTTGTTTCACAGAATAATGCCCCATAGGTCATGGCCAGTT +
Preference number: 5 (lower is better)
Translates to: PVQDGEQLPPRWSHL*HLFHRIMPHRSWPV
Trigger: AACTGGCCATGACCTATGGGGCATTATTCTGTGAAACAAGTGCCAAAGATGGCTCCAACGTGGTGGAAGCTGTTCTCCATCTTGCACGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS-3UTR CAA 90 bp CTACTGCCAGGCAGATGCCATGAGACTGTGGCCATCCTCCTAAGAAGGTTGACCTCACGAAGATCAGCCTaGTTTCCTACTAACATGATA +
Preference number: 5 (lower is better)
Translates to: LLPGRCHETVAILLRRLTSRRSA*FPTNMI
Trigger: TATCATGTTAGTAGGAAACAAGGCTGATCTTCGTGA...GGTCAACCTTCTTAGGAGGATGGCCACAGTCTCATGGCATCTGCCTGGCAGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS TCA 90 bp AGAATCAAACGCTTCTTCATCCCTTATATCTGGAACATCTGTGTCTaGTGCATCGCCCCCAAGGCTCTCCTCTGTTCTGTGCAAAGTCTG +
Preference number: 5 (lower is better)
Translates to: RIKRFFIPYIWNICV*CIAPKALLCSVQSL
Trigger: CAGACTTTGCACAGAACAGAGGAGAGCCTTGGGGGCGATGCATCAGACACAGATGTTCCAGATATAAGGGATGAAGAAGCGTTTGATTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CCA 90 bp AGTTTGATCTCACGGAGAAAGTTCCTTATCACACGTTCATACGGTTaGAGTAGCCTTGGCTCCACAAGGGTGATGTTCTGGTACAGGGTA +
Preference number: 5 (lower is better)
Translates to: SLISRRKFLITRSYG*SSLGSTRVMFWYRV
Trigger: TACCCTGTACCAGAACATCACCCTTGTGGAGCCAAGGCTACTCCAACCGTATGAACGTGTGATAAGGAACTTTCTCCGTGAGATCAAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000222414.2
CDS CCA 90 bp TGGGCTCTCTTCACTGCAATGGCCAGGTTTTCCATCTCTGTGCTCTaGAGTTTGATCTCACGGAGAAAGTTCCTTATCACACGTTCATAC +
Preference number: 5 (lower is better)
Translates to: WALFTAMARFSISVL*SLISRRKFLITRSY
Trigger: GTATGAACGTGTGATAAGGAACTTTCTCCGTGAGATCAAACTCCAGAGCACAGAGATGGAAAACCTGGCCATTGCAGTGAAGAGAGCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000222414.2
CDS CCA 90 bp TTTTCTTCACTTCCCGTGCAAGATGGAGAACAGCTTCCACCACGTTaGAGCCATCTTTGGCACTTGTTTCACAGAATAATGCCCCATAGG +
Preference number: 5 (lower is better)
Translates to: FSSLPVQDGEQLPPR*SHLWHLFHRIMPHR
Trigger: CCTATGGGGCATTATTCTGTGAAACAAGTGCCAAAGATGGCTCCAACGTGGTGGAAGCTGTTCTCCATCTTGCACGGGAAGTGAAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS-3UTR CAA 90 bp AACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTTTGGAGGATTTCAATTaGCCTCTCAAGACTGCTTCG +
Preference number: 5 (lower is better)
Translates to: NHFQETVLPFHCGVRYKSLEDFN*PLKTAS
Trigger: CGAAGCAGTCTTGAGAGGCAAATTGAAATCCTCCAA...AGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS TCA 90 bp TCTTCACTGCAATGGCCAGGTTTTCCATCTCTGTGCTCTGGAGTTTaGTCTCACGGAGAAAGTTCCTTATCACACGTTCATACGGTTGGA +
Preference number: 5 (lower is better)
Translates to: SSLQWPGFPSLCSGV*SHGESSLSHVHTVG
Trigger: TCCAACCGTATGAACGTGTGATAAGGAACTTTCTCCGTGAGATCAAACTCCAGAGCACAGAGATGGAAAACCTGGCCATTGCAGTGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000222414.2
CDS TCA 90 bp GTTTTCATTTGGAAATCAACTCCTAGAGTTGCGCTTGTGTTCCCCTaGAACTCATTCTTGCAGAGACGCATGAGGAAGCTGGACTTTCCC +
Preference number: 5 (lower is better)
Translates to: VFIWKSTPRVALVFP*NSFLQRRMRKLDFP
Trigger: GGGAAAGTCCAGCTTCCTCATGCGTCTCTGCAAGAATGAGTTTCAGGGGAACACAAGCGCAACTCTAGGAGTTGATTTCCAAATGAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS GCA 90 bp ATTTATACGCAAGGATCTGTTGAGCTTGCTGTAAGTGTTTTCCAGTaGACTCCTGAGGCCATCATTACTGTCATGCAGCTTCCGGTTAGC +
Preference number: 5 (lower is better)
Translates to: IYTQGSVELAVSVFQ*TPEAIITVMQLPVS
Trigger: GCTAACCGGAAGCTGCATGACAGTAATGATGGCCTCAGGAGTGCACTGGAAAACACTTACAGCAAGCTCAACAGATCCTTGCGTATAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS-3UTR CAA 90 bp AACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTCTCATTTTCCACAGCTaGAATCCTCTGATCCATTTC +
Preference number: 5 (lower is better)
Translates to: NHFQETVLPFHCGVRYKSLIFHS*NPLIHF
Trigger: GAAATGGATCAGAGGATTCAAGCTGTGGAAAATGAG...AGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CAA 90 bp CTAAGCTTGTCAGTCATGTCACCTAGACAACTTTCTGGTAAACACAGCTGTTCTACAGCTTCCACCACGTaGGAGCCATCTTTGGCACTT +
Preference number: 5 (lower is better)
Translates to: LSLSVMSPRQLSGKHSCSTASTT*EPSLAL
Trigger: AAGTGCCAAAGATGGCTCCAACGTGGTGGAAGCTGT...AGAACAGCTGTGTTTACCAGAAAGTTGTCTAGGTGACATGACTGACAAGCTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CAA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAAACAGCTTCCACCACGTaGGAGCCATCTTTGGCACTT +
Preference number: 5 (lower is better)
Translates to: TPGRTSALIIHPWLQRIETASTT*EPSLAL
Trigger: AAGTGCCAAAGATGGCTCCAACGTGGTGGAAGCTGT...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS TCA 90 bp AACCTTTTAATGGTCACTTGTAAGTCTCCTACTTCTGTTTCATACTaGCGCCTGAGGTCAGTGAGAGCCTCCTCAGCTTTGCGCTTTTCA +
Preference number: 5 (lower is better)
Translates to: NLLMVTCKSPTSVSY*RLRSVRASSALRFS
Trigger: TGAAAAGCGCAAAGCTGAGGAGGCTCTCACTGACCTCAGGCGTCAGTATGAAACAGAAGTAGGAGACTTACAAGTGACCATTAAAAGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS-3UTR CAA 90 bp AACCACTTTCAGGAGACAGTTCTGCCCTTCCACTGTGGGGTCAGGTACAAATCTTCACGAAGATCAGCCTaGTTTCCTACTAACATGATA +
Preference number: 5 (lower is better)
Translates to: NHFQETVLPFHCGVRYKSSRRSA*FPTNMI
Trigger: TATCATGTTAGTAGGAAACAAGGCTGATCTTCGTGA...AGATTTGTACCTGACCCCACAGTGGAAGGGCAGAACTGTCTCCTGAAAGTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CAA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATAGAAGGAAGGCTACGTTaGTCTGTGCTTCCAAAAGTT +
Preference number: 5 (lower is better)
Translates to: NWFRPLETCFCRPILSQIEGRLR*SVLPKV
Trigger: AACTTTTGGAAGCACAGACAAACGTAGCCTTCCTTC...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CAA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAATCGGAGTCACACTCATaGTCTCTCAGAGTAGACAGA +
Preference number: 5 (lower is better)
Translates to: TPGRTSALIIHPWLQRIESESHS*SLRVDR
Trigger: TCTGTCTACTCTGAGAGACAATGAGTGTGACTCCGA...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CAA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAAGTACAGGGTACTAACTaGTTCTTTCTTCAAGCCTCG +
Preference number: 5 (lower is better)
Translates to: TPGRTSALIIHPWLQRIEVQGTN*FFLQAS
Trigger: CGAGGCTTGAAGAAAGAACAAGTTAGTACCCTGTAC...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058292.13
CDS-3UTR CAA 90 bp CTAAGCTTGTCAGTCATGTCACCTAGACAACTTTCTGGTAAACACAGCTGTTCTTTGGAGGATTTCAATTaGCCTCTCAAGACTGCTTCG +
Preference number: 5 (lower is better)
Translates to: LSLSVMSPRQLSGKHSCSLEDFN*PLKTAS
Trigger: CGAAGCAGTCTTGAGAGGCAAATTGAAATCCTCCAA...AGAACAGCTGTGTTTACCAGAAAGTTGTCTAGGTGACATGACTGACAAGCTTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CAA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAACTTCCGGTTAGCTGTTaGGAGGATTTCAATTTGCCT +
Preference number: 5 (lower is better)
Translates to: TPGRTSALIIHPWLQRIELPVSC*EDFNLP
Trigger: AGGCAAATTGAAATCCTCCAAACAGCTAACCGGAAG...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CAA 90 bp ACCCCAGGCAGAACGTCTGCATTAATAATACACCCTTGGTTACAGAGAATAGAACTCATTTTCCACAGCTaGAATCCTCTGATCCATTTC +
Preference number: 5 (lower is better)
Translates to: TPGRTSALIIHPWLQRIELIFHS*NPLIHF
Trigger: GAAATGGATCAGAGGATTCAAGCTGTGGAAAATGAG...TTCTATTCTCTGTAACCAAGGGTGTATTATTAATGCAGACGTTCTGCCTGGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CAA 90 bp AATTGGTTCAGGCCACTAGAAACATGTTTTTGTCGGCCCATCCTGAGTCAGATACAATGCCGTCACATCTaGCTTTTGACTTATTTGTCT +
Preference number: 5 (lower is better)
Translates to: NWFRPLETCFCRPILSQIQCRHI*LLTYLS
Trigger: AGACAAATAAGTCAAAAGCAAGATGTGACGGCATTG...TATCTGACTCAGGATGGGCCGACAAAAACATGTTTCTAGTGGCCTGAACCAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CAA 90 bp CCTGTGTGCCAATTTCTCTGGCCATTCCTCACAATCAATGTATTCTTTTTAATCTCGGAGTCACACTCATaGTCTCTCAGAGTAGACAGA +
Preference number: 5 (lower is better)
Translates to: PVCQFLWPFLTINVFFLISESHS*SLRVDR
Trigger: TCTGTCTACTCTGAGAGACAATGAGTGTGACTCCGA...GATTAAAAAGAATACATTGATTGTGAGGAATGGCCAGAGAAATTGGCACACAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CAA 90 bp GAAAATAAGCCTTTACCCTTAACCTCAATTTTAACATTAGAGGAGGAAGGACAGACTCCTAAATCTCTCTaGCCCAGCTGTATCCCAGAG +
Preference number: 5 (lower is better)
Translates to: ENKPLPLTSILTLEEEGQTPKSL*PSCIPE
Trigger: CTCTGGGATACAGCTGGGCAAGAGAGATTTAGGAGT...CTGTCCTTCCTCCTCTAATGTTAAAATTGAGGTTAAGGGTAAAGGCTTATTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS-3UTR CAA 90 bp GAAAATAAGCCTTTACCCTTAACCTCAATTTTAACATTAGAGGAGGAAGGACAGCTTCCGGTTAGCTGTTaGGAGGATTTCAATTTGCCT +
Preference number: 5 (lower is better)
Translates to: ENKPLPLTSILTLEEEGQLPVSC*EDFNLP
Trigger: AGGCAAATTGAAATCCTCCAAACAGCTAACCGGAAG...CTGTCCTTCCTCCTCTAATGTTAAAATTGAGGTTAAGGGTAAAGGCTTATTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
CDS TCA 72 bp CGGCCTCGGCCACGTGCAGCTCCGCGCACAACGCGCTaGACTCCGCACGCTCCAGGCGCCCGGAGCCGTTCG +
Preference number: 6 (lower is better)
Translates to: RPRPRAAPRTTR*TPHAPGARSRS
Trigger: CGAACGGCTCCGGGCGCCTGGAGCGTGCGGAGTTCAGCGCGTTGTGCGCGGAGCTGCACGTGGCCGAGGCCG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222414.2
CDS GCA 72 bp GAAGTCCCGCCACGCGGGGCTCGGGCTCTCCGGCTCTaGCACTTCCCAGGCGCCCTGGGCCTCCGCACTGTC +
Preference number: 6 (lower is better)
Translates to: EVPPRGARALRL*HFPGALGLRTV
Trigger: GACAGTGCGGAGGCCCAGGGCGCCTGGGAAGTGGCAGAGCCGGAGAGCCCGAGCCCCGCGTGGCGGGACTTC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222414.2
CDS GCA 72 bp CCCCTGAACACGGCCTCTGCTTCGGCCTCGGCCACGTaGAGCTCCGCGCACAACGCGCTGAACTCCGCACGC +
Preference number: 6 (lower is better)
Translates to: PLNTASASASAT*SSAHNALNSAR
Trigger: GCGTGCGGAGTTCAGCGCGTTGTGCGCGGAGCTGCACGTGGCCGAGGCCGAAGCAGAGGCCGTGTTCAGGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222414.2
CDS CCA 72 bp CACGCTCCAGGCGCCCGGAGCCGTTCGTGTCGTAGGTaGCGAAGACGGAGCGCAGCCGGGTCAGCTCCTCAG +
Preference number: 6 (lower is better)
Translates to: HAPGARSRSCRR*RRRSAAGSAPQ
Trigger: CTGAGGAGCTGACCCGGCTGCGCTCCGTCTTCGCCACCTACGACACGAACGGCTCCGGGCGCCTGGAGCGTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222414.2
CDS GCA 72 bp ATCGCGGTCCGTGTCGAGCCCCCTGAACACGGCCTCTaGTTCGGCCTCGGCCACGTGCAGCTCCGCGCACAA +
Preference number: 6 (lower is better)
Translates to: IAVRVEPPEHGL*FGLGHVQLRAQ
Trigger: TTGTGCGCGGAGCTGCACGTGGCCGAGGCCGAAGCAGAGGCCGTGTTCAGGGGGCTCGACACGGACCGCGAT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222414.2
CDS CCA 72 bp GAGGAACTAAGAGTGCTGCCCTCACCAGCAGAGCCCTaGGGCTGCCAGTGTAAGACAGAGGCCACACTTTCA +
Preference number: 6 (lower is better)
Translates to: EELRVLPSPAEP*GCQCKTEATLS
Trigger: TGAAAGTGTGGCCTCTGTCTTACACTGGCAGCCCCAGGGCTCTGCTGGTGAGGGCAGCACTCTTAGTTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CCA 72 bp TACAGGGTACTAACTTGTTCTTTCCTGGGAATGAGTTaGGCCTCGTCTCCGAGGCGCGCATGGAAGTCCCGC +
Preference number: 6 (lower is better)
Translates to: YRVLTCSFLGMS*ASSPRRAWKSR
Trigger: GCGGGACTTCCATGCGCGCCTCGGAGACGAGGCCCAACTCATTCCCAGGAAAGAACAAGTTAGTACCCTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222414.2
CDS CAA 72 bp GTACAGGGTACTAACTTGTTCTTTCCTGGGAATGAGTaGGGCCTCGTCTCCGAGGCGCGCATGGAAGTCCCG +
Preference number: 6 (lower is better)
Translates to: VQGTNLFFPGNE*GLVSEARMEVP
Trigger: CGGGACTTCCATGCGCGCCTCGGAGACGAGGCCCAACTCATTCCCAGGAAAGAACAAGTTAGTACCCTGTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222414.2
CDS TCA 72 bp TTGTGTTCCCCTGAAACTCATTCTTGCAGAGACGCATaGGGAAGCTGGACTTTCCCACTGCGGCGTCGCCAG +
Preference number: 6 (lower is better)
Translates to: LCSPETHSCRDA*GSWTFPLRRRQ
Trigger: CTGGCGACGCCGCAGTGGGAAAGTCCAGCTTCCTCATGCGTCTCTGCAAGAATGAGTTTCAGGGGAACACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CCA 72 bp TCTGATCCATTTCCTCTTCCAGCTCACTTAGCTGAATaGCCGCCTTGTCCTGGGCTCTCTTCACTGCAATGG +
Preference number: 6 (lower is better)
Translates to: SDPFPLPAHLAE*PPCPGLSSLQW
Trigger: CCATTGCAGTGAAGAGAGCCCAGGACAAGGCGGCCATTCAGCTAAGTGAGCTGGAAGAGGAAATGGATCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS TCA 72 bp CGCTTCTTCATCCCTTATATCTGGAACATCTGTGTCTaGTGCATCGCCCCCAAGGCTCTCCTCTGTTCTGTG +
Preference number: 6 (lower is better)
Translates to: RFFIPYIWNICV*CIAPKALLCSV
Trigger: CACAGAACAGAGGAGAGCCTTGGGGGCGATGCATCAGACACAGATGTTCCAGATATAAGGGATGAAGAAGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CAA 72 bp CTCCACAAGGGTGATGTTCTGGTACAGGGTACTAACTaGTTCTTTCCTGGGAATGAGTTGGGCCTCGTCTCC +
Preference number: 6 (lower is better)
Translates to: LHKGDVLVQGTN*FFPGNELGLVS
Trigger: GGAGACGAGGCCCAACTCATTCCCAGGAAAGAACAAGTTAGTACCCTGTACCAGAACATCACCCTTGTGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222414.2
CDS CCA 72 bp TCACGGAGAAAGTTCCTTATCACACGTTCATACGGTTaGAGTAGCCTTGGCTCCACAAGGGTGATGTTCTGG +
Preference number: 6 (lower is better)
Translates to: SRRKFLITRSYG*SSLGSTRVMFW
Trigger: CCAGAACATCACCCTTGTGGAGCCAAGGCTACTCCAACCGTATGAACGTGTGATAAGGAACTTTCTCCGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000222414.2
CDS CCA 72 bp TCATCCTCTGTCCTTTTCTTCACTTCCCGTGCAAGATaGAGAACAGCTTCCACCACGTTGGAGCCATCTTTG +
Preference number: 6 (lower is better)
Translates to: SSSVLFFTSRAR*RTASTTLEPSL
Trigger: CAAAGATGGCTCCAACGTGGTGGAAGCTGTTCTCCATCTTGCACGGGAAGTGAAGAAAAGGACAGAGGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS TCA 72 bp TGGAAATCAACTCCTAGAGTTGCGCTTGTGTTCCCCTaGAACTCATTCTTGCAGAGACGCATGAGGAAGCTG +
Preference number: 6 (lower is better)
Translates to: WKSTPRVALVFP*NSFLQRRMRKL
Trigger: CAGCTTCCTCATGCGTCTCTGCAAGAATGAGTTTCAGGGGAACACAAGCGCAACTCTAGGAGTTGATTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CCA 72 bp CTTCCCGTGCAAGATGGAGAACAGCTTCCACCACGTTaGAGCCATCTTTGGCACTTGTTTCACAGAATAATG +
Preference number: 6 (lower is better)
Translates to: LPVQDGEQLPPR*SHLWHLFHRIM
Trigger: CATTATTCTGTGAAACAAGTGCCAAAGATGGCTCCAACGTGGTGGAAGCTGTTCTCCATCTTGCACGGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CAA 90 bp CTCTTCACTGCAATGGCCAGGTTTTCCATCTCTGTGCTCTGGAGTTaGATCTCACGGAGAAAGTTCCTTATCACACGTTCATACGGTTGG +
Preference number: 6 (lower is better)
Translates to: LFTAMARFSISVLWS*ISRRKFLITRSYGW
Trigger: CCAACCGTATGAACGTGTGATAAGGAACTTTCTCCGTGAGATCAAACTCCAGAGCACAGAGATGGAAAACCTGGCCATTGCAGTGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000222414.2
CDS CAA 90 bp CAAGATGGAGAACAGCTTCCACCACGTTGGAGCCATCTTTGGCACTaGTTTCACAGAATAATGCCCCATAGGTCATGGCCAGTTTTTCTC +
Preference number: 6 (lower is better)
Translates to: QDGEQLPPRWSHLWH*FHRIMPHRSWPVFL
Trigger: GAGAAAAACTGGCCATGACCTATGGGGCATTATTCTGTGAAACAAGTGCCAAAGATGGCTCCAACGTGGTGGAAGCTGTTCTCCATCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS GCA 72 bp CAAGGATCTGTTGAGCTTGCTGTAAGTGTTTTCCAGTaGACTCCTGAGGCCATCATTACTGTCATGCAGCTT +
Preference number: 6 (lower is better)
Translates to: QGSVELAVSVFQ*TPEAIITVMQL
Trigger: AAGCTGCATGACAGTAATGATGGCCTCAGGAGTGCACTGGAAAACACTTACAGCAAGCTCAACAGATCCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CAA 72 bp CTCCACAAGGGTGATGTTCTGGTACAGGGTACTAACTaGTTCTTTCTTCAAGCCTCGTTTCAGTCTGTCTCC +
Preference number: 6 (lower is better)
Translates to: LHKGDVLVQGTN*FFLQASFQSVS
Trigger: GGAGACAGACTGAAACGAGGCTTGAAGAAAGAACAAGTTAGTACCCTGTACCAGAACATCACCCTTGTGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058292.13
CDS CAA 72 bp GCAATGGCCAGGTTTTCCATCTCTGTGCTCTGGAGTTaGATCTCACGGAGAAAGTTCCTTATCACACGTTCA +
Preference number: 6 (lower is better)
Translates to: AMARFSISVLWS*ISRRKFLITRS
Trigger: TGAACGTGTGATAAGGAACTTTCTCCGTGAGATCAAACTCCAGAGCACAGAGATGGAAAACCTGGCCATTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000222414.2
CDS TCA 72 bp CAATGGCCAGGTTTTCCATCTCTGTGCTCTGGAGTTTaGTCTCACGGAGAAAGTTCCTTATCACACGTTCAT +
Preference number: 6 (lower is better)
Translates to: QWPGFPSLCSGV*SHGESSLSHVH
Trigger: ATGAACGTGTGATAAGGAACTTTCTCCGTGAGATCAAACTCCAGAGCACAGAGATGGAAAACCTGGCCATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000058292.13
ENSMUST00000222414.2
CDS GCA 72 bp TTTTCCAGTGCACTCCTGAGGCCATCATTACTGTCATaGAGCTTCCGGTTAGCTGTTTGGAGGATTTCAATT +
Preference number: 6 (lower is better)
Translates to: FSSALLRPSLLS*SFRLAVWRISI
Trigger: AATTGAAATCCTCCAAACAGCTAACCGGAAGCTGCATGACAGTAATGATGGCCTCAGGAGTGCACTGGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CCA 72 bp GCCTTGTTTCCTACTAACATGATAGGAATAGTTCTGTaGGTTCCATCCTCAACCATATCCACCCATTCTCGG +
Preference number: 6 (lower is better)
Translates to: ALFPTNMIGIVL*VPSSTISTHSR
Trigger: CCGAGAATGGGTGGATATGGTTGAGGATGGAACCCACAGAACTATTCCTATCATGTTAGTAGGAAACAAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CAA 72 bp GAGTTTTCATTTGGAAATCAACTCCTAGAGTTGCGCTaGTGTTCCCCTGAAACTCATTCTTGCAGAGACGCA +
Preference number: 6 (lower is better)
Translates to: EFSFGNQLLELR*CSPETHSCRDA
Trigger: TGCGTCTCTGCAAGAATGAGTTTCAGGGGAACACAAGCGCAACTCTAGGAGTTGATTTCCAAATGAAAACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CCA 72 bp TGGCACTTGTTTCACAGAATAATGCCCCATAGGTCATaGCCAGTTTTTCTCCAAGATATGCTGATATACACT +
Preference number: 6 (lower is better)
Translates to: WHLFHRIMPHRS*PVFLQDMLIYT
Trigger: AGTGTATATCAGCATATCTTGGAGAAAAACTGGCCATGACCTATGGGGCATTATTCTGTGAAACAAGTGCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS CAA 72 bp CAATCAGAGTTTTCATTTGGAAATCAACTCCTAGAGTaGCGCTTGTGTTCCCCTGAAACTCATTCTTGCAGA +
Preference number: 6 (lower is better)
Translates to: QSEFSFGNQLLE*RLCSPETHSCR
Trigger: TCTGCAAGAATGAGTTTCAGGGGAACACAAGCGCAACTCTAGGAGTTGATTTCCAAATGAAAACTCTGATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2
CDS TCA 72 bp GCCAGTTTTTCTCCAAGATATGCTGATATACACTTTTaGTTCTCTGCATTATCAACATCACGAAGATCAGCC +
Preference number: 6 (lower is better)
Translates to: ASFSPRYADIHF*FSALSTSRRSA
Trigger: GGCTGATCTTCGTGATGTTGATAATGCAGAGAATCAAAAGTGTATATCAGCATATCTTGGAGAAAAACTGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000058292.13
ENSMUST00000102837.3
ENSMUST00000222414.2