Pregenerated sensors for RASD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049892Ensembl transcript IDs: ENSMUST00000062405.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGACAGCTCCTGTCTTAGCTAGTTCTCTTTCCTTTCACAGCAGGTaGCTGTCCCTTACTGGCTTGGTCTCCCCGGGCTGGGTCTCAGGG | + |
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Preference number: 1 (lower is better) Translates to: VTAPVLASSLSFHSR*LSLTGLVSPGWVSG Trigger: CCCTGAGACCCAGCCCGGGGAGACCAAGCCAGTAAGGGACAGTCACCTGCTGTGAAAGGAAAGAGAACTAGCTAAGACAGGAGCTGTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| 3UTR TCA 90 bp | AACACCAATCACAGACAAGATAATGCCCTATTATTAGTCCTGCCCTaGAGCGAGCAGGACAGTTACTTTAAGTCTCACAGGCTGATGAAC | + |
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Preference number: 1 (lower is better) Translates to: NTNHRQDNALLLVLP*SEQDSYFKSHRLMN Trigger: GTTCATCAGCCTGTGAGACTTAAAGTAACTGTCCTGCTCGCTTCAGGGCAGGACTAATAATAGGGCATTATCTTGTCTGTGATTGGTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| 3UTR-3UTR TCA 90 bp | CAGAGGTGGCTGACAGCGGCCATGGCAACACCAATCACAGACAAGATAATGCCCTTATTAGTCCTGCCCTaGAGCGAGCAGGACAGTTAC | + |
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Preference number: 2 (lower is better) Translates to: QRWLTAAMATPITDKIMPLLVLP*SEQDSY Trigger: GTAACTGTCCTGCTCGCTTCAGGGCAGGACTAATAA...GGGCATTATCTTGTCTGTGATTGGTGTTGCCATGGCCGCTGTCAGCCACCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| 3UTR CCA 72 bp | TTTCCTTTCACAGCAGGTGACTGTCCCTTACTGGCTTaGTCTCCCCGGGCTGGGTCTCAGGGAGGGAAGGAG | + |
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Preference number: 3 (lower is better) Translates to: FPFTAGDCPLLA*SPRAGSQGGKE Trigger: CTCCTTCCCTCCCTGAGACCCAGCCCGGGGAGACCAAGCCAGTAAGGGACAGTCACCTGCTGTGAAAGGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| 3UTR CCA 72 bp | TCAGGGAGGGAAGGAGAAGGCCAATTGGCGCTCCTGTaGCACGGACCGCTAGTCCAGGAATCCGATTTGACT | + |
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Preference number: 3 (lower is better) Translates to: SGREGEGQLALL*HGPLVQESDLT Trigger: AGTCAAATCGGATTCCTGGACTAGCGGTCCGTGCCACAGGAGCGCCAATTGGCCTTCTCCTTCCCTCCCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| 3UTR CCA 72 bp | CTTGAGAAAAATGCCAAGCGCCCCTCTGCTGGGTCCTaGCATCCCAGAATCGGAGGTGACAGCTCCTGTCTT | + |
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Preference number: 3 (lower is better) Translates to: LEKNAKRPSAGS*HPRIGGDSSCL Trigger: AAGACAGGAGCTGTCACCTCCGATTCTGGGATGCCAGGACCCAGCAGAGGGGCGCTTGGCATTTTTCTCAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| 3UTR TCA 72 bp | AGCCAAAGTTTCCAGTTTGCTGAGGACAGAGGTGGCTaGCAGCGGCCATGGCAACACCAATCACAGACAAGA | + |
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Preference number: 3 (lower is better) Translates to: SQSFQFAEDRGG*QRPWQHQSQTR Trigger: TCTTGTCTGTGATTGGTGTTGCCATGGCCGCTGTCAGCCACCTCTGTCCTCAGCAAACTGGAAACTTTGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR TCA 90 bp | TTTCCTTTCACAGCAGGTGACTGTCCCTTACTGGCTTGGTCTCCCCGGGCTGGGCCTCGAAACGGCCCGTaGGGAAGCGCGACACAATGG | + |
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Preference number: 4 (lower is better) Translates to: FPFTAGDCPLLAWSPRAGPRNGP*GSATQW Trigger: CCATTGTGTCGCGCTTCCTCACGGGCCGTTTCGAGG...CCCAGCCCGGGGAGACCAAGCCAGTAAGGGACAGTCACCTGCTGTGAAAGGAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR GCA 90 bp | TGGGTCTCAGGGAGGGAAGGAGAAGGCCAATTGGCGCTCCTGTGGCACGGACCGACACAATGGCCGTCTTaGCCACTTTGGATGAGCCGA | + |
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Preference number: 4 (lower is better) Translates to: WVSGREGEGQLALLWHGPTQWPS*PLWMSR Trigger: TCGGCTCATCCAAAGTGGGCAAGACGGCCATTGTGT...CGGTCCGTGCCACAGGAGCGCCAATTGGCCTTCTCCTTCCCTCCCTGAGACCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR GCA 90 bp | GAGAAAAATGCCAAGCGCCCCTCTGCTGGGTCCTGGCATCCCAGAATCGGAGGTTACATGAGGTCGCTGTaGACGCTGGGTCTGCGAGCA | + |
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Preference number: 4 (lower is better) Translates to: EKNAKRPSAGSWHPRIGGYMRSL*TLGLRA Trigger: TGCTCGCAGACCCAGCGTGCACAGCGACCTCATGTA...ACCTCCGATTCTGGGATGCCAGGACCCAGCAGAGGGGCGCTTGGCATTTTTCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CCA 90 bp | GTGACTGTCCCTTACTGGCTTGGTCTCCCCGGGCTGGGTCTCAGGGAGGGAAGGTCCTGTAGCAGTTCTTaGCCGGGATACTCAGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: VTVPYWLGLPGLGLREGRSCSSS*PGYSVQ Trigger: CTGAACTGAGTATCCCGGCCAAGAACTGCTACAGGA...CCTTCCCTCCCTGAGACCCAGCCCGGGGAGACCAAGCCAGTAAGGGACAGTCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR TCA 90 bp | GAGAAAAATGCCAAGCGCCCCTCTGCTGGGTCCTGGCATCCCAGAATCGGAGGTCTTGCCCACTTTGGATaGGCCGAGGATGACCATCCT | + |
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Preference number: 4 (lower is better) Translates to: EKNAKRPSAGSWHPRIGGLAHFG*AEDDHP Trigger: AGGATGGTCATCCTCGGCTCATCCAAAGTGGGCAAG...ACCTCCGATTCTGGGATGCCAGGACCCAGCAGAGGGGCGCTTGGCATTTTTCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR TCA 90 bp | TTTCCTTTCACAGCAGGTGACTGTCCCTTACTGGCTTGGTCTCCCCGGGCTGGGTGGATGAGCCGAGGATaGCCATCCTGTAGCAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: FPFTAGDCPLLAWSPRAGWMSRG*PSCSSS Trigger: AGAACTGCTACAGGATGGTCATCCTCGGCTCATCCA...CCCAGCCCGGGGAGACCAAGCCAGTAAGGGACAGTCACCTGCTGTGAAAGGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR GCA 90 bp | GAGAAAAATGCCAAGCGCCCCTCTGCTGGGTCCTGGCATCCCAGAATCGGAGGTAGTACGTCGCAGTACTaGACAGATACCTTGCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: EKNAKRPSAGSWHPRIGGSTSQY*TDTLRC Trigger: GCACCGCAAGGTATCTGTGCAGTACTGCGACGTACT...ACCTCCGATTCTGGGATGCCAGGACCCAGCAGAGGGGCGCTTGGCATTTTTCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CCA 90 bp | CAGAGGTGGCTGACAGCGGCCATGGCAACACCAATCACAGACAAGATAATGCCCGGAAGCGCGACACAATaGCCGTCTTGCCCACTTTGG | + |
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Preference number: 4 (lower is better) Translates to: QRWLTAAMATPITDKIMPGSATQ*PSCPLW Trigger: CCAAAGTGGGCAAGACGGCCATTGTGTCGCGCTTCC...GGGCATTATCTTGTCTGTGATTGGTGTTGCCATGGCCGCTGTCAGCCACCTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR TCA 90 bp | CAGAGGTGGCTGACAGCGGCCATGGCAACACCAATCACAGACAAGATAATGCCCCTTTGTTACCGCAAATaGCCAGCGGCACGTCCACAT | + |
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Preference number: 4 (lower is better) Translates to: QRWLTAAMATPITDKIMPLCYRK*PAARPH Trigger: ATGTGGACGTGCCGCTGGTCATTTGCGGTAACAAAG...GGGCATTATCTTGTCTGTGATTGGTGTTGCCATGGCCGCTGTCAGCCACCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR GCA 90 bp | GAGAAAAATGCCAAGCGCCCCTCTGCTGGGTCCTGGCATCCCAGAATCGGAGGTTGCTGTTTGAGCCTTTaGACCTCTTCGAATGAGTCG | + |
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Preference number: 4 (lower is better) Translates to: EKNAKRPSAGSWHPRIGGCCLSL*TSSNES Trigger: CGACTCATTCGAAGAGGTGCAAAGGCTCAAACAGCA...ACCTCCGATTCTGGGATGCCAGGACCCAGCAGAGGGGCGCTTGGCATTTTTCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CCA 90 bp | CAGAGGTGGCTGACAGCGGCCATGGCAACACCAATCACAGACAAGATAATGCCCTCCTTGTCCTTAGCCTaGCTGCCGACACTGGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: QRWLTAAMATPITDKIMPSLSLA*LPTLVF Trigger: AAAAACCAGTGTCGGCAGCCAGGCTAAGGACAAGGA...GGGCATTATCTTGTCTGTGATTGGTGTTGCCATGGCCGCTGTCAGCCACCTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR GCA 90 bp | AGCGAGCAGGACAGTTACTTTAAGTCTCACAGGCTGATGAACTTCACACGCTTTACAGATACCTTGCGGTaGAAGTCGGGGCTCATCTCG | + |
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Preference number: 4 (lower is better) Translates to: SEQDSYFKSHRLMNFTRFTDTLR*KSGLIS Trigger: CGAGATGAGCCCCGACTTGCACCGCAAGGTATCTGT...AAAGCGTGTGAAGTTCATCAGCCTGTGAGACTTAAAGTAACTGTCCTGCTCGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CCA 90 bp | TGGCTGACAGCGGCCATGGCAACACCAATCACAGACAAGATAATGCCCTATTATCAGTTCAGAGTCGCTTaGGCACATCTTCTTGATCAT | + |
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Preference number: 4 (lower is better) Translates to: WLTAAMATPITDKIMPYYQFRVA*AHLLDH Trigger: ATGATCAAGAAGATGTGCCCAAGCGACTCTGAACTG...ATAATAGGGCATTATCTTGTCTGTGATTGGTGTTGCCATGGCCGCTGTCAGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR TCA 90 bp | TGGCTGACAGCGGCCATGGCAACACCAATCACAGACAAGATAATGCCCTATTATCTTTGGTTTTGTTCTTaGGACAGGACTTGGTGTCTA | + |
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Preference number: 4 (lower is better) Translates to: WLTAAMATPITDKIMPYYLWFCS*DRTWCL Trigger: TAGACACCAAGTCCTGTCTCAAGAACAAAACCAAAG...ATAATAGGGCATTATCTTGTCTGTGATTGGTGTTGCCATGGCCGCTGTCAGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR GCA 90 bp | TTTAAGTCTCACAGGCTGATGAACTTCACACGCTTTTTCTCAAACCTCTTGAGACTCAGAGCCTTCTTGTaGAGTACGTCGCAGTACTGC | + |
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Preference number: 4 (lower is better) Translates to: FKSHRLMNFTRFFSNLLRLRAFL*STSQYC Trigger: GCAGTACTGCGACGTACTGCACAAGAAGGCTCTGAG...TCTCAAGAGGTTTGAGAAAAAGCGTGTGAAGTTCATCAGCCTGTGAGACTTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR TCA 90 bp | TTTAAGTCTCACAGGCTGATGAACTTCACACGCTTTTTCTCAAACCTCTTGAGATTGGGCACATCTTCTTaGTCATCGCGGCCAGTTTCA | + |
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Preference number: 4 (lower is better) Translates to: FKSHRLMNFTRFFSNLLRLGTSS*SSRPVS Trigger: TGAAACTGGCCGCGATGATCAAGAAGATGTGCCCAA...TCTCAAGAGGTTTGAGAAAAAGCGTGTGAAGTTCATCAGCCTGTGAGACTTAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS GCA 90 bp | GCGCCAAGATGCCAAAGGCATCGCCGTGGTCGCCCCCGCCTCCGCTaGCCGCACGCAGAAGCTTCTTGTTCCTCAGAGCCTTCTTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: APRCQRHRRGRPRLR*PHAEASCSSEPSCA Trigger: TGCACAAGAAGGCTCTGAGGAACAAGAAGCTTCTGCGTGCGGGCAGCGGAGGCGGGGGCGACCACGGCGATGCCTTTGGCATCTTGGCGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS TCA 90 bp | GCCCGTGAGGAAGCGCGACACAATGGCCGTCTTGCCCACTTTGGATaGGCCGAGGATGACCATCCTGTAGCAGTTCTTGGCCGGGATACT | + |
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Preference number: 5 (lower is better) Translates to: AREEARHNGRLAHFG*AEDDHPVAVLGRDT Trigger: AGTATCCCGGCCAAGAACTGCTACAGGATGGTCATCCTCGGCTCATCCAAAGTGGGCAAGACGGCCATTGTGTCGCGCTTCCTCACGGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CAA 90 bp | TGGGTCTCAGGGAGGGAAGGAGAAGGCCAATTGGCGCTCCTGTGGCACGGACCGTCGAATGAGTCGCGGTaGTCTAAGCTGAACACCAGA | + |
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Preference number: 5 (lower is better) Translates to: WVSGREGEGQLALLWHGPSNESR*SKLNTR Trigger: TCTGGTGTTCAGCTTAGACAACCGCGACTCATTCGA...CGGTCCGTGCCACAGGAGCGCCAATTGGCCTTCTCCTTCCCTCCCTGAGACCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS GCA 90 bp | CCGCTGCCCGCACGCAGAAGCTTCTTGTTCCTCAGAGCCTTCTTGTaGAGTACGTCGCAGTACTGCACAGATACCTTGCGGTGCAAGTCG | + |
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Preference number: 5 (lower is better) Translates to: PLPARRSFLFLRAFL*STSQYCTDTLRCKS Trigger: CGACTTGCACCGCAAGGTATCTGTGCAGTACTGCGACGTACTGCACAAGAAGGCTCTGAGGAACAAGAAGCTTCTGCGTGCGGGCAGCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CAA 90 bp | GAGAAAAATGCCAAGCGCCCCTCTGCTGGGTCCTGGCATCCCAGAATCGGAGGTCTTGGGCACATCTTCTaGATCATCGCGGCCAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: EKNAKRPSAGSWHPRIGGLGHIF*IIAASF Trigger: GAAACTGGCCGCGATGATCAAGAAGATGTGCCCAAG...ACCTCCGATTCTGGGATGCCAGGACCCAGCAGAGGGGCGCTTGGCATTTTTCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CAA 90 bp | TTTCCTTTCACAGCAGGTGACTGTCCCTTACTGGCTTGGTCTCCCCGGGCTGGGTTCCTCAGAGCCTTCTaGTGCAGTACGTCGCAGTAC | + |
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Preference number: 5 (lower is better) Translates to: FPFTAGDCPLLAWSPRAGFLRAF*CSTSQY Trigger: GTACTGCGACGTACTGCACAAGAAGGCTCTGAGGAA...CCCAGCCCGGGGAGACCAAGCCAGTAAGGGACAGTCACCTGCTGTGAAAGGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS TCA 90 bp | AGCGCGACACAATGGCCGTCTTGCCCACTTTGGATGAGCCGAGGATaGCCATCCTGTAGCAGTTCTTGGCCGGGATACTCAGTTCAGAGT | + |
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Preference number: 5 (lower is better) Translates to: SATQWPSCPLWMSRG*PSCSSSWPGYSVQS Trigger: ACTCTGAACTGAGTATCCCGGCCAAGAACTGCTACAGGATGGTCATCCTCGGCTCATCCAAAGTGGGCAAGACGGCCATTGTGTCGCGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CAA 90 bp | GGTGACTGTCCCTTACTGGCTTGGTCTCCCCGGGCTGGGTCTCAGGGAGGGAAGTCTTTGGTTTTGTTCTaGAGACAGGACTTGGTGTCT | + |
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Preference number: 5 (lower is better) Translates to: GDCPLLAWSPRAGSQGGKSLVLF*RQDLVS Trigger: AGACACCAAGTCCTGTCTCAAGAACAAAACCAAAGA...CTTCCCTCCCTGAGACCCAGCCCGGGGAGACCAAGCCAGTAAGGGACAGTCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CAA 90 bp | GTGACTGTCCCTTACTGGCTTGGTCTCCCCGGGCTGGGTCTCAGGGAGGGAAGGACATTCTCTTTGGTTTaGTTCTTGAGACAGGACTTG | + |
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Preference number: 5 (lower is better) Translates to: VTVPYWLGLPGLGLREGRTFSLV*FLRQDL Trigger: CAAGTCCTGTCTCAAGAACAAAACCAAAGAGAATGT...CCTTCCCTCCCTGAGACCCAGCCCGGGGAGACCAAGCCAGTAAGGGACAGTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CAA 90 bp | AGCGAGCAGGACAGTTACTTTAAGTCTCACAGGCTGATGAACTTCACACGCTTTATGACACAGCGCTCCTaGTCCTTAGCCTGGCTGCCG | + |
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Preference number: 5 (lower is better) Translates to: SEQDSYFKSHRLMNFTRFMTQRS*SLAWLP Trigger: CGGCAGCCAGGCTAAGGACAAGGAGCGCTGTGTCAT...AAAGCGTGTGAAGTTCATCAGCCTGTGAGACTTAAAGTAACTGTCCTGCTCGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CAA 90 bp | CCAGAATCGGAGGTGACAGCTCCTGTCTTAGCTAGTTCTCTTTCCTTTCACAGCTTCTTGAGACAGGACTaGGTGTCTAGGATCTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: PESEVTAPVLASSLSFHSFLRQD*VSRICC Trigger: ACAGCAGATCCTAGACACCAAGTCCTGTCTCAAGAA...GCTGTGAAAGGAAAGAGAACTAGCTAAGACAGGAGCTGTCACCTCCGATTCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CAA 90 bp | AGCGAGCAGGACAGTTACTTTAAGTCTCACAGGCTGATGAACTTCACACGCTTTGCACGCAGAAGCTTCTaGTTCCTCAGAGCCTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: SEQDSYFKSHRLMNFTRFARRSF*FLRAFL Trigger: CAAGAAGGCTCTGAGGAACAAGAAGCTTCTGCGTGC...AAAGCGTGTGAAGTTCATCAGCCTGTGAGACTTAAAGTAACTGTCCTGCTCGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS GCA 90 bp | TTCTCTTTGGTTTTGTTCTTGAGACAGGACTTGGTGTCTAGGATCTaGTGTTTGAGCCTTTGCACCTCTTCGAATGAGTCGCGGTTGTCT | + |
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Preference number: 5 (lower is better) Translates to: FSLVLFLRQDLVSRI*CLSLCTSSNESRLS Trigger: AGACAACCGCGACTCATTCGAAGAGGTGCAAAGGCTCAAACAGCAGATCCTAGACACCAAGTCCTGTCTCAAGAACAAAACCAAAGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS-3UTR CAA 90 bp | TTTAAGTCTCACAGGCTGATGAACTTCACACGCTTTTTCTCAAACCTCTTGAGATCTAGGATCTGCTGTTaGAGCCTTTGCACCTCTTCG | + |
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Preference number: 5 (lower is better) Translates to: FKSHRLMNFTRFFSNLLRSRICC*SLCTSS Trigger: CGAAGAGGTGCAAAGGCTCAAACAGCAGATCCTAGA...TCTCAAGAGGTTTGAGAAAAAGCGTGTGAAGTTCATCAGCCTGTGAGACTTAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS GCA 72 bp | TGCCAAAGGCATCGCCGTGGTCGCCCCCGCCTCCGCTaGCCGCACGCAGAAGCTTCTTGTTCCTCAGAGCCT | + |
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Preference number: 6 (lower is better) Translates to: CQRHRRGRPRLR*PHAEASCSSEP Trigger: AGGCTCTGAGGAACAAGAAGCTTCTGCGTGCGGGCAGCGGAGGCGGGGGCGACCACGGCGATGCCTTTGGCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS CAA 72 bp | AAACGGCCCGTGAGGAAGCGCGACACAATGGCCGTCTaGCCCACTTTGGATGAGCCGAGGATGACCATCCTG | + |
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Preference number: 6 (lower is better) Translates to: KRPVRKRDTMAV*PTLDEPRMTIL Trigger: CAGGATGGTCATCCTCGGCTCATCCAAAGTGGGCAAGACGGCCATTGTGTCGCGCTTCCTCACGGGCCGTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS CAA 90 bp | CCTCCGCTGCCCGCACGCAGAAGCTTCTTGTTCCTCAGAGCCTTCTaGTGCAGTACGTCGCAGTACTGCACAGATACCTTGCGGTGCAAG | + |
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Preference number: 6 (lower is better) Translates to: PPLPARRSFLFLRAF*CSTSQYCTDTLRCK Trigger: CTTGCACCGCAAGGTATCTGTGCAGTACTGCGACGTACTGCACAAGAAGGCTCTGAGGAACAAGAAGCTTCTGCGTGCGGGCAGCGGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS TCA 72 bp | GAAGCGCGACACAATGGCCGTCTTGCCCACTTTGGATaGGCCGAGGATGACCATCCTGTAGCAGTTCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: EARHNGRLAHFG*AEDDHPVAVLG Trigger: GCCAAGAACTGCTACAGGATGGTCATCCTCGGCTCATCCAAAGTGGGCAAGACGGCCATTGTGTCGCGCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS TCA 72 bp | CAATGGCCGTCTTGCCCACTTTGGATGAGCCGAGGATaGCCATCCTGTAGCAGTTCTTGGCCGGGATACTCA | + |
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Preference number: 6 (lower is better) Translates to: QWPSCPLWMSRG*PSCSSSWPGYS Trigger: TGAGTATCCCGGCCAAGAACTGCTACAGGATGGTCATCCTCGGCTCATCCAAAGTGGGCAAGACGGCCATTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS TCA 72 bp | CCCGGTAGAAGTCCCGGTCCCCTTTGTTACCGCAAATaGCCAGCGGCACGTCCACATTCTCTTTGGTTTTGT | + |
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Preference number: 6 (lower is better) Translates to: PGRSPGPLCYRK*PAARPHSLWFC Trigger: ACAAAACCAAAGAGAATGTGGACGTGCCGCTGGTCATTTGCGGTAACAAAGGGGACCGGGACTTCTACCGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS GCA 72 bp | GCACGCAGAAGCTTCTTGTTCCTCAGAGCCTTCTTGTaGAGTACGTCGCAGTACTGCACAGATACCTTGCGG | + |
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Preference number: 6 (lower is better) Translates to: ARRSFLFLRAFL*STSQYCTDTLR Trigger: CCGCAAGGTATCTGTGCAGTACTGCGACGTACTGCACAAGAAGGCTCTGAGGAACAAGAAGCTTCTGCGTGC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS CAA 72 bp | CCCGCACGCAGAAGCTTCTTGTTCCTCAGAGCCTTCTaGTGCAGTACGTCGCAGTACTGCACAGATACCTTG | + |
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Preference number: 6 (lower is better) Translates to: PARRSFLFLRAF*CSTSQYCTDTL Trigger: CAAGGTATCTGTGCAGTACTGCGACGTACTGCACAAGAAGGCTCTGAGGAACAAGAAGCTTCTGCGTGCGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS CCA 72 bp | GCAGTTCTTGGCCGGGATACTCAGTTCAGAGTCGCTTaGGCACATCTTCTTGATCATCGCGGCCAGTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: AVLGRDTQFRVA*AHLLDHRGQFH Trigger: ATGAAACTGGCCGCGATGATCAAGAAGATGTGCCCAAGCGACTCTGAACTGAGTATCCCGGCCAAGAACTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS GCA 72 bp | CAGGACTTGGTGTCTAGGATCTGCTGTTTGAGCCTTTaGACCTCTTCGAATGAGTCGCGGTTGTCTAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: QDLVSRICCLSL*TSSNESRLSKL Trigger: CAGCTTAGACAACCGCGACTCATTCGAAGAGGTGCAAAGGCTCAAACAGCAGATCCTAGACACCAAGTCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS CAA 90 bp | CCGCAAATGACCAGCGGCACGTCCACATTCTCTTTGGTTTTGTTCTaGAGACAGGACTTGGTGTCTAGGATCTGCTGTTTGAGCCTTTGC | + |
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Preference number: 6 (lower is better) Translates to: PQMTSGTSTFSLVLF*RQDLVSRICCLSLC Trigger: GCAAAGGCTCAAACAGCAGATCCTAGACACCAAGTCCTGTCTCAAGAACAAAACCAAAGAGAATGTGGACGTGCCGCTGGTCATTTGCGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS CAA 90 bp | TCCCCTTTGTTACCGCAAATGACCAGCGGCACGTCCACATTCTCTTaGGTTTTGTTCTTGAGACAGGACTTGGTGTCTAGGATCTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: SPLLPQMTSGTSTFS*VLFLRQDLVSRICC Trigger: ACAGCAGATCCTAGACACCAAGTCCTGTCTCAAGAACAAAACCAAAGAGAATGTGGACGTGCCGCTGGTCATTTGCGGTAACAAAGGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS CAA 72 bp | CAAATGACCAGCGGCACGTCCACATTCTCTTTGGTTTaGTTCTTGAGACAGGACTTGGTGTCTAGGATCTGC | + |
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Preference number: 6 (lower is better) Translates to: QMTSGTSTFSLV*FLRQDLVSRIC Trigger: GCAGATCCTAGACACCAAGTCCTGTCTCAAGAACAAAACCAAAGAGAATGTGGACGTGCCGCTGGTCATTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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| CDS CAA 90 bp | TTGTTACCGCAAATGACCAGCGGCACGTCCACATTCTCTTTGGTTTaGTTCTTGAGACAGGACTTGGTGTCTAGGATCTGCTGTTTGAGC | + |
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Preference number: 6 (lower is better) Translates to: LLPQMTSGTSTFSLV*FLRQDLVSRICCLS Trigger: GCTCAAACAGCAGATCCTAGACACCAAGTCCTGTCTCAAGAACAAAACCAAAGAGAATGTGGACGTGCCGCTGGTCATTTGCGGTAACAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062405.8 |
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