Pregenerated sensors for RASA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004952Ensembl transcript IDs: ENSMUST00000042135.14, ENSMUST00000100570.10, ENSMUST00000122887.2, ENSMUST00000145294.2
Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCCAGACAGTGGCAAAGCAATGTGAGGTGGACAGCCTGTTCTCCTaGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGGTTC | + |
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Preference number: 1 (lower is better) Translates to: GQTVAKQCEVDSLFS*VKNMGHGDYKSSWF Trigger: GAACCAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCTGTCCACCTCACATTGCTTTGCCACTGTCTGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR TCA 90 bp | AGACAGTGGCAAAGCAATGTGAGGTGGACAGCCTGTTCTCCTGGGTaGAGAATATGGGTCATGGGGACTACAAGAGCAGTTGGTTCTCCC | + |
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Preference number: 1 (lower is better) Translates to: RQWQSNVRWTACSPG*RIWVMGTTRAVGSP Trigger: GGGAGAACCAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCTGTCCACCTCACATTGCTTTGCCACTGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR CAA 90 bp | GGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTaGTCCCTCGCAGACATGGAGAAGACTATGCTGGGTCACAGCCCT | + |
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Preference number: 2 (lower is better) Translates to: GLQEQLVLPRKQVSR*SLADMEKTMLGHSP Trigger: AGGGCTGTGACCCAGCATAGTCTTCTCCATGTCTGCGAGGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR-3UTR CCA 90 bp | ATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCTGGAGAAGACTATGCTaGGTCACAGCCCTCCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: MGTTRAVGSPKEAGVTVVWRRLC*VTALPR Trigger: TCTGGGGAGGGCTGTGACCCAGCATAGTCTTCTCCA...GACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR-3UTR CCA 90 bp | GGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCTCGCAGACATaGAGAAGACTATGCTGGGTC | + |
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Preference number: 2 (lower is better) Translates to: GHGDYKSSWFSQGSRCHGCPSQT*RRLCWV Trigger: GACCCAGCATAGTCTTCTCCATGTCTGCGAGGGACA...ACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR-3UTR TCA 90 bp | ATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCTGGGACAAGGATCCTaGGCATGTCTAGGATCTGCA | + |
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Preference number: 2 (lower is better) Translates to: MGTTRAVGSPKEAGVTVVLGQGS*ACLGSA Trigger: TGCAGATCCTAGACATGCTCAGGATCCTTGTCCCAG...GACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR-3UTR GCA 90 bp | GGGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGAGCATGTCTAGGATCTaGAAACACCTAACAGGGGCT | + |
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Preference number: 2 (lower is better) Translates to: GSWGLQEQLVLPRKQVSRSMSRI*KHLTGA Trigger: AGCCCCTGTTAGGTGTTTGCAGATCCTAGACATGCT...CCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR-3UTR CCA 90 bp | CAGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGTGGAGAAGACTATGCTaGGTCACAGCCCTCCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: QPVLLGEEYGSWGLQEQLWRRLC*VTALPR Trigger: TCTGGGGAGGGCTGTGACCCAGCATAGTCTTCTCCA...CAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR-3UTR TCA 90 bp | TATGGGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACTGGGACAAGGATCCTaGGCATGTCTAGGATCTGCA | + |
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Preference number: 2 (lower is better) Translates to: YGSWGLQEQLVLPRKQVSLGQGS*ACLGSA Trigger: TGCAGATCCTAGACATGCTCAGGATCCTTGTCCCAG...TGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACCCATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR-3UTR GCA 90 bp | AGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGGAGCATGTCTAGGATCTaGAAACACCTAACAGGGGCT | + |
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Preference number: 2 (lower is better) Translates to: SLFSWVKNMGHGDYKSSWSMSRI*KHLTGA Trigger: AGCCCCTGTTAGGTGTTTGCAGATCCTAGACATGCT...CCAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR-3UTR CAA 90 bp | ACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCTCGCAGACCCTCCCCAGAACAGTaGACTGGGACAAGGATCCTG | + |
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Preference number: 3 (lower is better) Translates to: TRAVGSPKEAGVTVVPRRPSPEQ*TGTRIL Trigger: CAGGATCCTTGTCCCAGTCAACTGTTCTGGGGAGGG...TCTGCGAGGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR GCA 72 bp | CTCTGCTCTAACACTTCAGCTTCGGTCTGTGGGCGGTaGAGCCCAGAGCACCCTACATCCTTAACTTCCACT | + |
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Preference number: 3 (lower is better) Translates to: LCSNTSASVCGR*SPEHPTSLTST Trigger: AGTGGAAGTTAAGGATGTAGGGTGCTCTGGGCTGCACCGCCCACAGACCGAAGCTGAAGTGTTAGAGCAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000145294.2 |
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| 3UTR-3UTR CAA 90 bp | AGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGGCCCTCCCCAGAACAGTaGACTGGGACAAGGATCCTG | + |
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Preference number: 3 (lower is better) Translates to: SLFSWVKNMGHGDYKSSWPSPEQ*TGTRIL Trigger: CAGGATCCTTGTCCCAGTCAACTGTTCTGGGGAGGG...CCAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR TCA 72 bp | ATCCGACCTAGGAGGCCAGACAGTGGCAAAGCAATGTaGGGTGGACAGCCTGTTCTCCTGGGTGAAGAATAT | + |
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Preference number: 3 (lower is better) Translates to: IRPRRPDSGKAM*GGQPVLLGEEY Trigger: ATATTCTTCACCCAGGAGAACAGGCTGTCCACCTCACATTGCTTTGCCACTGTCTGGCCTCCTAGGTCGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR CCA 72 bp | GGACAGCCTGTTCTCCTGGGTGAAGAATATGGGTCATaGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: GQPVLLGEEYGS*GLQEQLVLPRK Trigger: CTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCTGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR CCA 72 bp | GTGGCAAAGCAATGTGAGGTGGACAGCCTGTTCTCCTaGGTGAAGAATATGGGTCATGGGGACTACAAGAGC | + |
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Preference number: 3 (lower is better) Translates to: VAKQCEVDSLFS*VKNMGHGDYKS Trigger: GCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCTGTCCACCTCACATTGCTTTGCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR TCA 72 bp | CAAAGCAATGTGAGGTGGACAGCCTGTTCTCCTGGGTaGAGAATATGGGTCATGGGGACTACAAGAGCAGTT | + |
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Preference number: 3 (lower is better) Translates to: QSNVRWTACSPG*RIWVMGTTRAV Trigger: AACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCTGTCCACCTCACATTGCTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | GGGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGGGGCTCTCTGGCTGCTaGGCTGGCCAGGCTGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: GSWGLQEQLVLPRKQVSRGLSGC*AGQAGA Trigger: GGCTCCAGCCTGGCCAGCCCAGCAGCCAGAGAGCCC...CCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | CAGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGGGGCTCTCTGGCTGCTaGGCTGGCCAGGCTGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: QPVLLGEEYGSWGLQEQLGLSGC*AGQAGA Trigger: GGCTCCAGCCTGGCCAGCCCAGCAGCCAGAGAGCCC...CAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR TCA 90 bp | GGGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGCACAGGTGGTGCCTGTaGGTTCAAAGCCCGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: GSWGLQEQLVLPRKQVSRHRWCL*VQSPLQ Trigger: CTGCAGCGGGCTTTGAACTCACAGGCACCACCTGTG...CCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR GCA 90 bp | GGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTCGGTCTGTGGGCGGTaGAGCCCAGAGCACCCTACA | + |
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Preference number: 4 (lower is better) Translates to: GHGDYKSSWFSQGSRCHGSVCGR*SPEHPT Trigger: TGTAGGGTGCTCTGGGCTGCACCGCCCACAGACCGA...ACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | GGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCTGCCTTGACGGCTTTTaGACTGGTCAGGCTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: GDYKSSWFSQGSRCHGCPCLDGF*TGQAAA Trigger: GGCTGCAGCCTGACCAGTCCAAAAGCCGTCAAGGCA...GGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | TATGGGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACTGGGCTGGCCAGGCTaGAGCCGTGGGCTTCTCGAA | + |
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Preference number: 4 (lower is better) Translates to: YGSWGLQEQLVLPRKQVSLGWPG*SRGLLE Trigger: TTCGAGAAGCCCACGGCTCCAGCCTGGCCAGCCCAG...TGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACCCATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | CAGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGCTGGGCTGGCCAGGCTaGAGCCGTGGGCTTCTCGAA | + |
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Preference number: 4 (lower is better) Translates to: QPVLLGEEYGSWGLQEQLLGWPG*SRGLLE Trigger: TTCGAGAAGCCCACGGCTCCAGCCTGGCCAGCCCAG...CAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR TCA 90 bp | GGGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTGTAGCTCTAGAAGGTaGTGGGGCTCTCTGGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: GSWGLQEQLVLPRKQVSRCSSRR*WGSLAA Trigger: AGCAGCCAGAGAGCCCCATCACCTTCTAGAGCTACA...CCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR GCA 90 bp | ACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCTCGCAGATGTTGGCTTCACTGGTaGGGCCCAGCTCCAGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: TRAVGSPKEAGVTVVPRRCWLHW*GPAPAE Trigger: TTCAGCTGGAGCTGGGCCGCACCAGTGAAGCCAACA...TCTGCGAGGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | ACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCTCGCAGATCCACCTCCACCAGGTaGGTCCATCCACTGAATCCC | + |
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Preference number: 4 (lower is better) Translates to: TRAVGSPKEAGVTVVPRRSTSTR*VHPLNP Trigger: GGGATTCAGTGGATGGACCCACCTGGTGGAGGTGGA...TCTGCGAGGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | GGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGCCTTGACGGCTTTTaGACTGGTCAGGCTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: GHGDYKSSWFSQGSRCHGCLDGF*TGQAAA Trigger: GGCTGCAGCCTGACCAGTCCAAAAGCCGTCAAGGCA...ACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | ATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCTGTTCTGGACCGCCTTaGCCAGCAGAAGCAGCGTGC | + |
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Preference number: 4 (lower is better) Translates to: MGTTRAVGSPKEAGVTVVCSGPP*PAEAAC Trigger: GCACGCTGCTTCTGCTGGCCAAGGCGGTCCAGAACA...GACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042135.14 |
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| CDS-3UTR TCA 90 bp | GGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTCACCAGCAGTGCTTCTaGGGCTCCTTTTTCCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: GHGDYKSSWFSQGSRCHGHQQCF*GSFFQL Trigger: GAGCTGGAAAAAGGAGCCTCAGAAGCACTGCTGGTG...ACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR TCA 90 bp | TATGGGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACACAGGTGGTGCCTGTaGGTTCAAAGCCCGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: YGSWGLQEQLVLPRKQVSHRWCL*VQSPLQ Trigger: CTGCAGCGGGCTTTGAACTCACAGGCACCACCTGTG...TGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACCCATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR TCA 90 bp | GGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTAGCTCTAGAAGGTaGTGGGGCTCTCTGGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: GHGDYKSSWFSQGSRCHGCSSRR*WGSLAA Trigger: AGCAGCCAGAGAGCCCCATCACCTTCTAGAGCTACA...ACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR GCA 90 bp | ATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCTGTTGGCTTCACTGGTaGGGCCCAGCTCCAGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: MGTTRAVGSPKEAGVTVVCWLHW*GPAPAE Trigger: TTCAGCTGGAGCTGGGCCGCACCAGTGAAGCCAACA...GACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR GCA 90 bp | GGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCCAGATAGCGCATCCCTaGCACCTTCAGGAAAGACTC | + |
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Preference number: 4 (lower is better) Translates to: GDYKSSWFSQGSRCHGCPQIAHP*HLQERL Trigger: GAGTCTTTCCTGAAGGTGGCAGGGATGCGCTATCTG...GGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR GCA 90 bp | GGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCGCTCGCTTTGCGCAATaGAGACAGCCACTGGTTCAA | + |
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Preference number: 4 (lower is better) Translates to: GDYKSSWFSQGSRCHGCPARFAQ*RQPLVQ Trigger: TTGAACCAGTGGCTGTCTGCATTGCGCAAAGCGAGC...GGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | ACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCTCGCAGACCCAGCTTCACCTCCTaGCACAACAGTTGTACCAGG | + |
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Preference number: 4 (lower is better) Translates to: TRAVGSPKEAGVTVVPRRPSFTS*HNSCTR Trigger: CCTGGTACAACTGTTGTGCCAGGAGGTGAAGCTGGG...TCTGCGAGGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR CAA 72 bp | GAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTaGTCCCTCGCAGACATGGAGAAGACTATGCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: EQLVLPRKQVSR*SLADMEKTMLG Trigger: ACCCAGCATAGTCTTCTCCATGTCTGCGAGGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR TCA 90 bp | GGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCGTCTTGTCACATCCCTaGTCTGTCTTGTCCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: GDYKSSWFSQGSRCHGCPVLSHP*SVLSFW Trigger: CCAGAAGGACAAGACAGATCAGGGATGTGACAAGAC...GGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR GCA 90 bp | GGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTCAGATAGCGCATCCCTaGCACCTTCAGGAAAGACTC | + |
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Preference number: 4 (lower is better) Translates to: GHGDYKSSWFSQGSRCHGQIAHP*HLQERL Trigger: GAGTCTTTCCTGAAGGTGGCAGGGATGCGCTATCTG...ACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR GCA 90 bp | GGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCCTTGAACGAGGAGGATaGAAGAGGGCCTTTGCCTTT | + |
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Preference number: 4 (lower is better) Translates to: GDYKSSWFSQGSRCHGCPLERGG*KRAFAF Trigger: AAAGGCAAAGGCCCTCTTGCATCCTCCTCGTTCAAG...GGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | ATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCAGCCCTCTTCCTGCTaGGCTGAACAAAGTCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: MGTTRAVGSPKEAGVTVVQPSSC*AEQSLW Trigger: CCAGAGACTTTGTTCAGCCCAGCAGGAAGAGGGCTG...GACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| 3UTR CAA 72 bp | GAAGACTATGCTGGGTCACAGCCCTCCCCAGAACAGTaGACTGGGACAAGGATCCTGAGCATGTCTAGGATC | + |
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Preference number: 4 (lower is better) Translates to: EDYAGSQPSPEQ*TGTRILSMSRI Trigger: GATCCTAGACATGCTCAGGATCCTTGTCCCAGTCAACTGTTCTGGGGAGGGCTGTGACCCAGCATAGTCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR TCA 90 bp | AGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGGCACCAGCAGTGCTTCTaGGGCTCCTTTTTCCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: SLFSWVKNMGHGDYKSSWHQQCF*GSFFQL Trigger: GAGCTGGAAAAAGGAGCCTCAGAAGCACTGCTGGTG...CCAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR TCA 90 bp | ACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCTCGCAGACTCTTCCTGCTGGGCTaGACAAAGTCTCTGGACATT | + |
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Preference number: 4 (lower is better) Translates to: TRAVGSPKEAGVTVVPRRLFLLG*TKSLDI Trigger: AATGTCCAGAGACTTTGTTCAGCCCAGCAGGAAGAG...TCTGCGAGGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR TCA 90 bp | ACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCTCGCAGAGTCTTGTCACATCCCTaGTCTGTCTTGTCCTTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: TRAVGSPKEAGVTVVPRRVLSHP*SVLSFW Trigger: CCAGAAGGACAAGACAGATCAGGGATGTGACAAGAC...TCTGCGAGGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | GGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTTGCCTTTGGTCCTGTaGATGAACAATGGTCCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: GHGDYKSSWFSQGSRCHGLPLVL*MNNGPS Trigger: GGAGGGACCATTGTTCATCCACAGGACCAAAGGCAA...ACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | GGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCAAGGTCATGATCCAGTaGGTCATTCCATTCCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: GDYKSSWFSQGSRCHGCPKVMIQ*VIPFLQ Trigger: CTGCAGGAATGGAATGACCCACTGGATCATGACCTT...GGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR GCA 90 bp | CAGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGGCTCGCTTTGCGCAATaGAGACAGCCACTGGTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: QPVLLGEEYGSWGLQEQLARFAQ*RQPLVQ Trigger: TTGAACCAGTGGCTGTCTGCATTGCGCAAAGCGAGC...CAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR TCA 90 bp | GGCTTTGTCAGAGTATACAATGAATTCACTCACATGCATCACACACTTTGCACGCCCTCTCCCAGCCTATaGCCTGCTTGGGAAGGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: GFVRVYNEFTHMHHTLCTPSPSL*PAWEGD Trigger: GTCCCCTTCCCAAGCAGGTCATAGGCTGGGAGAGGG...CGTGCAAAGTGTGTGATGCATGTGAGTGAATTCATTGTATACTCTGACAAAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122887.2 |
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| CDS-3UTR GCA 90 bp | AGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGGCTTGAACGAGGAGGATaGAAGAGGGCCTTTGCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: SLFSWVKNMGHGDYKSSWLERGG*KRAFAF Trigger: AAAGGCAAAGGCCCTCTTGCATCCTCCTCGTTCAAG...CCAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CCA 90 bp | CAGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGATATTGCCTATGTTCTaGACCGCCTTGGCCAGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: QPVLLGEEYGSWGLQEQLILPMF*TALASR Trigger: TCTGCTGGCCAAGGCGGTCCAGAACATAGGCAATAT...CAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042135.14 |
||
| CDS-3UTR CCA 90 bp | AGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGGTTGCCTTTGGTCCTGTaGATGAACAATGGTCCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SLFSWVKNMGHGDYKSSWLPLVL*MNNGPS Trigger: GGAGGGACCATTGTTCATCCACAGGACCAAAGGCAA...CCAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
||
| CDS-3UTR TCA 90 bp | CAGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGAAAGTCTCTGGACATTaGCCGCCACTTTGCCTAGAA | + |
|
Preference number: 4 (lower is better) Translates to: QPVLLGEEYGSWGLQEQLKVSGH*PPLCLE Trigger: TTCTAGGCAAAGTGGCGGTCAATGTCCAGAGACTTT...CAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR TCA 90 bp | AGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGGAAAGTCTCTGGACATTaGCCGCCACTTTGCCTAGAA | + |
|
Preference number: 4 (lower is better) Translates to: SLFSWVKNMGHGDYKSSWKVSGH*PPLCLE Trigger: TTCTAGGCAAAGTGGCGGTCAATGTCCAGAGACTTT...CCAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
||
| CDS-3UTR GCA 90 bp | TCAGGCTTTGTCAGAGTATACAATGAATTCACTCACATGCATCACACACTTTGCTCCCAGCCTATGACCTaGTTGGGAAGGGGACCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SGFVRVYNEFTHMHHTLCSQPMT*LGRGPR Trigger: CCTGGGTCCCCTTCCCAAGCAGGTCATAGGCTGGGA...GCAAAGTGTGTGATGCATGTGAGTGAATTCATTGTATACTCTGACAAAGCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122887.2 |
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| CDS-3UTR CCA 90 bp | GGCTTTGTCAGAGTATACAATGAATTCACTCACATGCATCACACACTTTGCACGGAGTACCTGCAGGCCTaGTTGTCCTTGGGCAGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: GFVRVYNEFTHMHHTLCTEYLQA*LSLGSF Trigger: AAAGCTGCCCAAGGACAACCAGGCCTGCAGGTACTC...CGTGCAAAGTGTGTGATGCATGTGAGTGAATTCATTGTATACTCTGACAAAGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122887.2 |
||
| CDS-3UTR GCA 90 bp | GGCTTTGTCAGAGTATACAATGAATTCACTCACATGCATCACACACTTTGCACGGCTCGCTTTGCGCAATaGAGACAGCCACTGGTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: GFVRVYNEFTHMHHTLCTARFAQ*RQPLVQ Trigger: TTGAACCAGTGGCTGTCTGCATTGCGCAAAGCGAGC...CGTGCAAAGTGTGTGATGCATGTGAGTGAATTCATTGTATACTCTGACAAAGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122887.2 |
||
| CDS-3UTR GCA 90 bp | GGCTTTGTCAGAGTATACAATGAATTCACTCACATGCATCACACACTTTGCACGTCACAGATCTTTCTGTaGCAGGAGTACCTGCAGGCC | + |
|
Preference number: 4 (lower is better) Translates to: GFVRVYNEFTHMHHTLCTSQIFL*QEYLQA Trigger: GGCCTGCAGGTACTCCTGGCACAGAAAGATCTGTGA...CGTGCAAAGTGTGTGATGCATGTGAGTGAATTCATTGTATACTCTGACAAAGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122887.2 |
||
| CDS-3UTR GCA 90 bp | TCAGGCTTTGTCAGAGTATACAATGAATTCACTCACATGCATCACACACTTTGCCTTGAACGAGGAGGATaGAAGAGGGCCTTTGCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: SGFVRVYNEFTHMHHTLCLERGG*KRAFAF Trigger: AAAGGCAAAGGCCCTCTTGCATCCTCCTCGTTCAAG...GCAAAGTGTGTGATGCATGTGAGTGAATTCATTGTATACTCTGACAAAGCCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122887.2 |
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| CDS CCA 90 bp | CAGCCCGTGGGTGAGACACCTGCTTCTGTCGCCCCACGCAGGAGCTaGTATCTTTCCCGCAGAGCAGCCTCCACGCCTAGCAGGTGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: QPVGETPASVAPRRS*YLSRRAASTPSRCL Trigger: CAGGCACCTGCTAGGCGTGGAGGCTGCTCTGCGGGAAAGATACCAGCTCCTGCGTGGGGCGACAGAAGCAGGTGTCTCACCCACGGGCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS CCA 90 bp | GAAGCAGCTGGGCCAGCGAGTCCTCGGGAGCTCCATCACAGCCCGTaGGTGAGACACCTGCTTCTGTCGCCCCACGCAGGAGCTGGTATC | + |
|
Preference number: 5 (lower is better) Translates to: EAAGPASPRELHHSP*VRHLLLSPHAGAGI Trigger: GATACCAGCTCCTGCGTGGGGCGACAGAAGCAGGTGTCTCACCCACGGGCTGTGATGGAGCTCCCGAGGACTCGCTGGCCCAGCTGCTTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
||
| CDS CCA 90 bp | GCTCTAGAAGGTGATGGGGCTCTCTGGCTGCTGGGCTGGCCAGGCTaGAGCCGTGGGCTTCTCGAAGGTCTTGCAGCACACGAAGCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: ALEGDGALWLLGWPG*SRGLLEGLAAHEAA Trigger: AGCTGCTTCGTGTGCTGCAAGACCTTCGAGAAGCCCACGGCTCCAGCCTGGCCAGCCCAGCAGCCAGAGAGCCCCATCACCTTCTAGAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS CCA 90 bp | ACGTCTGTAGCTCTAGAAGGTGATGGGGCTCTCTGGCTGCTGGGCTaGCCAGGCTGGAGCCGTGGGCTTCTCGAAGGTCTTGCAGCACAC | + |
|
Preference number: 5 (lower is better) Translates to: TSVALEGDGALWLLG*PGWSRGLLEGLAAH Trigger: GTGTGCTGCAAGACCTTCGAGAAGCCCACGGCTCCAGCCTGGCCAGCCCAGCAGCCAGAGAGCCCCATCACCTTCTAGAGCTACAGACGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CAA 90 bp | GGGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGCGTAGGAGGCCCCTGTaGTTGGTGCTCGCTTTGCGC | + |
|
Preference number: 5 (lower is better) Translates to: GSWGLQEQLVLPRKQVSRRRRPL*LVLALR Trigger: GCGCAAAGCGAGCACCAACAACAGGGGCCTCCTACG...CCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CAA 90 bp | GGGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGATGTTCTGGACCGCCTaGGCCAGCAGAAGCAGCGTG | + |
|
Preference number: 5 (lower is better) Translates to: GSWGLQEQLVLPRKQVSRMFWTA*ASRSSV Trigger: CACGCTGCTTCTGCTGGCCAAGGCGGTCCAGAACAT...CCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042135.14 |
||
| CDS-3UTR CAA 90 bp | TATGGGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACTCCGGAAGAGGGTGTaGGCTTCACTGGTGCGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: YGSWGLQEQLVLPRKQVSLRKRV*ASLVRP Trigger: GGGCCGCACCAGTGAAGCCAACACCCTCTTCCGGAG...TGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACCCATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CAA 90 bp | ATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCGTAGGAGGCCCCTGTaGTTGGTGCTCGCTTTGCGC | + |
|
Preference number: 5 (lower is better) Translates to: MGTTRAVGSPKEAGVTVVRRRPL*LVLALR Trigger: GCGCAAAGCGAGCACCAACAACAGGGGCCTCCTACG...GACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CAA 90 bp | GGTCATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTCAGGTTGCCCTTGCCTaGACGGCTTTTGGACTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: GHGDYKSSWFSQGSRCHGQVALA*TAFGLV Trigger: GACCAGTCCAAAAGCCGTCAAGGCAAGGGCAACCTG...ACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCATGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CAA 90 bp | ATGGGGACTACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCAGGTTGCCCTTGCCTaGACGGCTTTTGGACTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: MGTTRAVGSPKEAGVTVVQVALA*TAFGLV Trigger: GACCAGTCCAAAAGCCGTCAAGGCAAGGGCAACCTG...GACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGTAGTCCCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CAA 90 bp | ACAAGAGCAGTTGGTTCTCCCAAGGAAGCAGGTGTCACGGTTGTCCCTCGCAGAACATTGACCGCCACTTaGCCTAGAAAGTCATTCCGG | + |
|
Preference number: 5 (lower is better) Translates to: TRAVGSPKEAGVTVVPRRTLTAT*PRKSFR Trigger: CCGGAATGACTTTCTAGGCAAAGTGGCGGTCAATGT...TCTGCGAGGGACAACCGTGACACCTGCTTCCTTGGGAGAACCAACTGCTCTTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CAA 90 bp | AGCCTGTTCTCCTGGGTGAAGAATATGGGTCATGGGGACTACAAGAGCAGTTGGACATTGACCGCCACTTaGCCTAGAAAGTCATTCCGG | + |
|
Preference number: 5 (lower is better) Translates to: SLFSWVKNMGHGDYKSSWTLTAT*PRKSFR Trigger: CCGGAATGACTTTCTAGGCAAAGTGGCGGTCAATGT...CCAACTGCTCTTGTAGTCCCCATGACCCATATTCTTCACCCAGGAGAACAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS-3UTR CAA 90 bp | TTTGTCAGAGTATACAATGAATTCACTCACATGCATCACACACTTTGCACGGCACGTAGGAGGCCCCTGTaGTTGGTGCTCGCTTTGCGC | + |
|
Preference number: 5 (lower is better) Translates to: FVRVYNEFTHMHHTLCTARRRPL*LVLALR Trigger: GCGCAAAGCGAGCACCAACAACAGGGGCCTCCTACG...TGCCGTGCAAAGTGTGTGATGCATGTGAGTGAATTCATTGTATACTCTGACAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122887.2 |
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| CDS-3UTR CAA 90 bp | TTTGTCAGAGTATACAATGAATTCACTCACATGCATCACACACTTTGCACGGCACAGCCTATGACCTGCTaGGGAAGGGGACCCAGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: FVRVYNEFTHMHHTLCTAQPMTC*GRGPRP Trigger: TGGCCTGGGTCCCCTTCCCAAGCAGGTCATAGGCTG...TGCCGTGCAAAGTGTGTGATGCATGTGAGTGAATTCATTGTATACTCTGACAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122887.2 |
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| CDS-3UTR CAA 90 bp | TTTGTCAGAGTATACAATGAATTCACTCACATGCATCACACACTTTGCACGGCATACCTGCAGGCCTGGTaGTCCTTGGGCAGCTTTGCC | + |
|
Preference number: 5 (lower is better) Translates to: FVRVYNEFTHMHHTLCTAYLQAW*SLGSFA Trigger: GGCAAAGCTGCCCAAGGACAACCAGGCCTGCAGGTA...TGCCGTGCAAAGTGTGTGATGCATGTGAGTGAATTCATTGTATACTCTGACAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122887.2 |
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| CDS-3UTR CAA 90 bp | TCAGGCTTTGTCAGAGTATACAATGAATTCACTCACATGCATCACACACTTTGCCAGGCCTGGTTGTCCTaGGGCAGCTTTGCCATAAAT | + |
|
Preference number: 5 (lower is better) Translates to: SGFVRVYNEFTHMHHTLCQAWLS*GSFAIN Trigger: ATTTATGGCAAAGCTGCCCAAGGACAACCAGGCCTG...GCAAAGTGTGTGATGCATGTGAGTGAATTCATTGTATACTCTGACAAAGCCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122887.2 |
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| CDS CCA 72 bp | AGTCCCTCGCCTCAAGCACCGCGCAGCGCAGCCGGCTaGCATGGACCCCTGGCACCACCTCCAGGCGCAGGT | + |
|
Preference number: 6 (lower is better) Translates to: SPSPQAPRSAAG*HGPLAPPPGAG Trigger: ACCTGCGCCTGGAGGTGGTGCCAGGGGTCCATGCCAGCCGGCTGCGCTGCGCGGTGCTTGAGGCGAGGGACT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS CCA 72 bp | TCTGGACCGCCTTGGCCAGCAGAAGCAGCGTGCGGCTaGTGCGGGCATCTGCATGCCGCTCTCGCAGGTGGA | + |
|
Preference number: 6 (lower is better) Translates to: SGPPWPAEAACG*CGHLHAALAGG Trigger: TCCACCTGCGAGAGCGGCATGCAGATGCCCGCACCAGCCGCACGCTGCTTCTGCTGGCCAAGGCGGTCCAGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042135.14 |
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| CDS TCA 72 bp | CAGCGAGTCCTCGGGAGCTCCATCACAGCCCGTGGGTaGGACACCTGCTTCTGTCGCCCCACGCAGGAGCTG | + |
|
Preference number: 6 (lower is better) Translates to: QRVLGSSITARG*DTCFCRPTQEL Trigger: CAGCTCCTGCGTGGGGCGACAGAAGCAGGTGTCTCACCCACGGGCTGTGATGGAGCTCCCGAGGACTCGCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS GCA 72 bp | CTGGCCAGGCTGGAGCCGTGGGCTTCTCGAAGGTCTTaGAGCACACGAAGCAGCTGGGCCAGCGAGTCCTCG | + |
|
Preference number: 6 (lower is better) Translates to: LARLEPWASRRS*STRSSWASESS Trigger: CGAGGACTCGCTGGCCCAGCTGCTTCGTGTGCTGCAAGACCTTCGAGAAGCCCACGGCTCCAGCCTGGCCAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS CCA 72 bp | GGTGATGGGGCTCTCTGGCTGCTGGGCTGGCCAGGCTaGAGCCGTGGGCTTCTCGAAGGTCTTGCAGCACAC | + |
|
Preference number: 6 (lower is better) Translates to: GDGALWLLGWPG*SRGLLEGLAAH Trigger: GTGTGCTGCAAGACCTTCGAGAAGCCCACGGCTCCAGCCTGGCCAGCCCAGCAGCCAGAGAGCCCCATCACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS CAA 72 bp | GCTGGCCAGGCTGGAGCCGTGGGCTTCTCGAAGGTCTaGCAGCACACGAAGCAGCTGGGCCAGCGAGTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: AGQAGAVGFSKV*QHTKQLGQRVL Trigger: GAGGACTCGCTGGCCCAGCTGCTTCGTGTGCTGCAAGACCTTCGAGAAGCCCACGGCTCCAGCCTGGCCAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
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| CDS CAA 90 bp | CCGTCCTGGGCCCTGAGTGCCCAGCTTCACCTCCTGGCACAACAGTaGTACCAGGGGCTGGTAGCAGACGGACGGCAGCACTGTCTCGTC | + |
|
Preference number: 6 (lower is better) Translates to: PSWALSAQLHLLAQQ*YQGLVADGRQHCLV Trigger: GACGAGACAGTGCTGCCGTCCGTCTGCTACCAGCCCCTGGTACAACTGTTGTGCCAGGAGGTGAAGCTGGGCACTCAGGGCCCAGGACGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
||
| CDS CAA 72 bp | GCCCTGAGTGCCCAGCTTCACCTCCTGGCACAACAGTaGTACCAGGGGCTGGTAGCAGACGGACGGCAGCAC | + |
|
Preference number: 6 (lower is better) Translates to: ALSAQLHLLAQQ*YQGLVADGRQH Trigger: GTGCTGCCGTCCGTCTGCTACCAGCCCCTGGTACAACTGTTGTGCCAGGAGGTGAAGCTGGGCACTCAGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
||
| CDS CAA 72 bp | CACCTGAGTGCCCAGCTTCACCTCCTGGCACAACAGTaGTACCAGGGGCTGGTAGCAGACGGACGGCAGCAC | + |
|
Preference number: 6 (lower is better) Translates to: HLSAQLHLLAQQ*YQGLVADGRQH Trigger: GTGCTGCCGTCCGTCTGCTACCAGCCCCTGGTACAACTGTTGTGCCAGGAGGTGAAGCTGGGCACTCAGGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145294.2 |
||
| CDS CCA 72 bp | GCCCTAGAGACCGGTGTGTCCATATTGCCTATGTTCTaGACCGCCTTGGCCAGCAGAAGCAGCGTGCGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: ALETGVSILPMF*TALASRSSVRL Trigger: CAGCCGCACGCTGCTTCTGCTGGCCAAGGCGGTCCAGAACATAGGCAATATGGACACACCGGTCTCTAGGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042135.14 |
||
| CDS CAA 90 bp | GGTTCCATCCACGACTCTTTGGCCCTAGAGACCGGTGTGTCCATATaGCCTATGTTCTGGACCGCCTTGGCCAGCAGAAGCAGCGTGCGG | + |
|
Preference number: 6 (lower is better) Translates to: GSIHDSLALETGVSI*PMFWTALASRSSVR Trigger: CCGCACGCTGCTTCTGCTGGCCAAGGCGGTCCAGAACATAGGCAATATGGACACACCGGTCTCTAGGGCCAAAGAGTCGTGGATGGAACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042135.14 |
||
| CDS CAA 72 bp | TCCTCCACCTTCTCCGCAGCCCGGATGCTGGCCAGCTaGATGAAGGTGCTTTTCTTGGAGCTGGACGTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: SSTFSAARMLAS*MKVLFLELDVL Trigger: CAAGACGTCCAGCTCCAAGAAAAGCACCTTCATCAAGCTGGCCAGCATCCGGGCTGCGGAGAAGGTGGAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 ENSMUST00000122887.2 |
||
| CDS CAA 72 bp | CACGACTCTTTGGCCCTAGAGACCGGTGTGTCCATATaGCCTATGTTCTGGACCGCCTTGGCCAGCAGAAGC | + |
|
Preference number: 6 (lower is better) Translates to: HDSLALETGVSI*PMFWTALASRS Trigger: GCTTCTGCTGGCCAAGGCGGTCCAGAACATAGGCAATATGGACACACCGGTCTCTAGGGCCAAAGAGTCGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042135.14 |
||
| CDS CAA 72 bp | CGCACGGTAGGCTGGAGTGGTTCCATCCACGACTCTTaGGCCCTAGAGACCGGTGTGTCCATATTGCCTATG | + |
|
Preference number: 6 (lower is better) Translates to: RTVGWSGSIHDS*ALETGVSILPM Trigger: CATAGGCAATATGGACACACCGGTCTCTAGGGCCAAAGAGTCGTGGATGGAACCACTCCAGCCTACCGTGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042135.14 ENSMUST00000100570.10 |
||
| CDS CAA 90 bp | TCACAGATCTTTCTGTGCCAGGAGTACCTGCAGGCCTGGTTGTCCTaGGGCAGCTTTGCCATAAATAAGCATGTGGCTTTTCAAGCTCCG | + |
|
Preference number: 6 (lower is better) Translates to: SQIFLCQEYLQAWLS*GSFAINKHVAFQAP Trigger: CGGAGCTTGAAAAGCCACATGCTTATTTATGGCAAAGCTGCCCAAGGACAACCAGGCCTGCAGGTACTCCTGGCACAGAAAGATCTGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122887.2 |
||
| CDS CAA 72 bp | CAGATCTTTCTGTGCCAGGAGTACCTGCAGGCCTGGTaGTCCTTGGGCAGCTTTGCCATAAATAAGCATGTG | + |
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Preference number: 6 (lower is better) Translates to: QIFLCQEYLQAW*SLGSFAINKHV Trigger: CACATGCTTATTTATGGCAAAGCTGCCCAAGGACAACCAGGCCTGCAGGTACTCCTGGCACAGAAAGATCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122887.2 |
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