Pregenerated sensors for RARS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028292Ensembl transcript IDs: ENSMUST00000029968.14, ENSMUST00000148519.3
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCCTCTGAAGTCCTGGATGATGACGGCGGCAAGCCCCACTCTCTCTaGCGTCTCCTGAGGGTTCTCCAATTGTTTCGTGGTCTTAATGGA | + |
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Preference number: 5 (lower is better) Translates to: ASEVLDDDGGKPHSL*RLLRVLQLFRGLNG Trigger: TCCATTAAGACCACGAAACAATTGGAGAACCCTCAGGAGACGGCAGAGAGAGTGGGGCTTGCCGCCGTCATCATCCAGGACTTCAGAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS GCA 90 bp | GGTCCCTGGTGGCATAGAGAGAGGTCCCATCACTTCGCATCACAGTaGAGACAGAAGAGAGGTCACCAGTCCCAGAGAGATCTACTACAA | + |
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Preference number: 5 (lower is better) Translates to: GPWWHRERSHHFASQ*RQKRGHQSQRDLLQ Trigger: TTGTAGTAGATCTCTCTGGGACTGGTGACCTCTCTTCTGTCTGCACTGTGATGCGAAGTGATGGGACCTCTCTCTATGCCACCAGGGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS TCA 90 bp | TCCCAAAGGGGACATGCTGGCACCTTTCCGCCCAGTCGTAGCCCATaGTCTTCAGCATTTGGAACACTTGCTGAAAATGCCTTCTTTGCC | + |
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Preference number: 5 (lower is better) Translates to: SQRGHAGTFPPSRSP*SSAFGTLAENAFFA Trigger: GGCAAAGAAGGCATTTTCAGCAAGTGTTCCAAATGCTGAAGATCATGGGCTACGACTGGGCGGAAAGGTGCCAGCATGTCCCCTTTGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS GCA 90 bp | TCTTCAATGCTCAAGTCCCGGAATCTCTGCCACAGTGACAGTGCCTaGGTGTCACCCATTTCTAGTCGGTGGAAGAACTCGTGTGCCAAT | + |
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Preference number: 5 (lower is better) Translates to: SSMLKSRNLCHSDSA*VSPISSRWKNSCAN Trigger: ATTGGCACACGAGTTCTTCCACCGACTAGAAATGGGTGACACGCAGGCACTGTCACTGTGGCAGAGATTCCGGGACTTGAGCATTGAAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS GCA 90 bp | CAAAGTATATTCCAAGACGCTTGTAAATCTGGGTGTACTCTTCAATaGTCAAGTCCCGGAATCTCTGCCACAGTGACAGTGCCTGCGTGT | + |
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Preference number: 5 (lower is better) Translates to: QSIFQDACKSGCTLQ*SSPGISATVTVPAC Trigger: ACACGCAGGCACTGTCACTGTGGCAGAGATTCCGGGACTTGAGCATTGAAGAGTACACCCAGATTTACAAGCGTCTTGGAATATACTTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS TCA 90 bp | TTGAAACAGACTGCGGCTCTTGTAAACAAGCAACATTGGAGTCATTaGGATACCCACATCCAAAAGTCTCTTCCAAACTACAGAGGCGGG | + |
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Preference number: 5 (lower is better) Translates to: LKQTAALVNKQHWSH*DTHIQKSLPNYRGG Trigger: CCCGCCTCTGTAGTTTGGAAGAGACTTTTGGATGTGGGTATCTCAATGACTCCAATGTTGCTTGTTTACAAGAGCCGCAGTCTGTTTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS CCA 90 bp | CTCTGCCACAGTGACAGTGCCTGCGTGTCACCCATTTCTAGTCGGTaGAAGAACTCGTGTGCCAATTTTGTTACATTTTTATCATCTGTT | + |
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Preference number: 5 (lower is better) Translates to: LCHSDSACVSPISSR*KNSCANFVTFLSSV Trigger: AACAGATGATAAAAATGTAACAAAATTGGCACACGAGTTCTTCCACCGACTAGAAATGGGTGACACGCAGGCACTGTCACTGTGGCAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS GCA 90 bp | AGTACCTCATCAAACCTGAGAAGATGCTGGAGAATTGAAACAGACTaGGGCTCTTGTAAACAAGCAACATTGGAGTCATTGAGATACCCA | + |
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Preference number: 5 (lower is better) Translates to: STSSNLRRCWRIETD*GSCKQATLESLRYP Trigger: TGGGTATCTCAATGACTCCAATGTTGCTTGTTTACAAGAGCCGCAGTCTGTTTCAATTCTCCAGCATCTTCTCAGGTTTGATGAGGTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS GCA 72 bp | GTCCTGGATGATGACGGCGGCAAGCCCCACTCTCTCTaGCGTCTCCTGAGGGTTCTCCAATTGTTTCGTGGT | + |
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Preference number: 6 (lower is better) Translates to: VLDDDGGKPHSL*RLLRVLQLFRG Trigger: ACCACGAAACAATTGGAGAACCCTCAGGAGACGGCAGAGAGAGTGGGGCTTGCCGCCGTCATCATCCAGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS GCA 72 bp | GTCTCTTCCAAACTACAGAGGCGGGCATGGGTGTACTaGAGGAAGACTCCAGTGTCCCCACGGCTCTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: VSSKLQRRAWVY*RKTPVSPRLWK Trigger: TTTCCAGAGCCGTGGGGACACTGGAGTCTTCCTGCAGTACACCCATGCCCGCCTCTGTAGTTTGGAAGAGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS TCA 72 bp | GGACATGCTGGCACCTTTCCGCCCAGTCGTAGCCCATaGTCTTCAGCATTTGGAACACTTGCTGAAAATGCC | + |
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Preference number: 6 (lower is better) Translates to: GHAGTFPPSRSP*SSAFGTLAENA Trigger: GGCATTTTCAGCAAGTGTTCCAAATGCTGAAGATCATGGGCTACGACTGGGCGGAAAGGTGCCAGCATGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS CAA 90 bp | ATGCTGGCACCTTTCCGCCCAGTCGTAGCCCATGATCTTCAGCATTaGGAACACTTGCTGAAAATGCCTTCTTTGCCCTTTGTCTGCGAC | + |
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Preference number: 6 (lower is better) Translates to: MLAPFRPVVAHDLQH*EHLLKMPSLPFVCD Trigger: GTCGCAGACAAAGGGCAAAGAAGGCATTTTCAGCAAGTGTTCCAAATGCTGAAGATCATGGGCTACGACTGGGCGGAAAGGTGCCAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS GCA 72 bp | GATGGCTGTCACCACTGTATCACACTTAAGCTTCTCTaGCAATCTCCTGGCTTGGTCTTGAGTGTCTACCTG | + |
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Preference number: 6 (lower is better) Translates to: DGCHHCITLKLL*QSPGLVLSVYL Trigger: CAGGTAGACACTCAAGACCAAGCCAGGAGATTGGCAGAGAAGCTTAAGTGTGATACAGTGGTGACAGCCATC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS GCA 72 bp | TTCCAAGACGCTTGTAAATCTGGGTGTACTCTTCAATaGTCAAGTCCCGGAATCTCTGCCACAGTGACAGTG | + |
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Preference number: 6 (lower is better) Translates to: FQDACKSGCTLQ*SSPGISATVTV Trigger: CACTGTCACTGTGGCAGAGATTCCGGGACTTGAGCATTGAAGAGTACACCCAGATTTACAAGCGTCTTGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS GCA 72 bp | GCCATCTTCAGTAACTTGTTGCAATACTGCCTTCTCTaGCAATCTCCTGGCTTGGTCTTGAGTGTCTACCTG | + |
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Preference number: 6 (lower is better) Translates to: AIFSNLLQYCLL*QSPGLVLSVYL Trigger: CAGGTAGACACTCAAGACCAAGCCAGGAGATTGGCAGAGAAGGCAGTATTGCAACAAGTTACTGAAGATGGC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148519.3 |
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| CDS CAA 72 bp | CCTTTCCGCCCAGTCGTAGCCCATGATCTTCAGCATTaGGAACACTTGCTGAAAATGCCTTCTTTGCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: PFRPVVAHDLQH*EHLLKMPSLPF Trigger: AAAGGGCAAAGAAGGCATTTTCAGCAAGTGTTCCAAATGCTGAAGATCATGGGCTACGACTGGGCGGAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS CAA 90 bp | ATTGAAACAGACTGCGGCTCTTGTAAACAAGCAACATTGGAGTCATaGAGATACCCACATCCAAAAGTCTCTTCCAAACTACAGAGGCGG | + |
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Preference number: 6 (lower is better) Translates to: IETDCGSCKQATLES*RYPHPKVSSKLQRR Trigger: CCGCCTCTGTAGTTTGGAAGAGACTTTTGGATGTGGGTATCTCAATGACTCCAATGTTGCTTGTTTACAAGAGCCGCAGTCTGTTTCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS CCA 72 bp | AGTGACAGTGCCTGCGTGTCACCCATTTCTAGTCGGTaGAAGAACTCGTGTGCCAATTTTGTTACATTTTTA | + |
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Preference number: 6 (lower is better) Translates to: SDSACVSPISSR*KNSCANFVTFL Trigger: TAAAAATGTAACAAAATTGGCACACGAGTTCTTCCACCGACTAGAAATGGGTGACACGCAGGCACTGTCACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS TCA 72 bp | ACTGCGGCTCTTGTAAACAAGCAACATTGGAGTCATTaGGATACCCACATCCAAAAGTCTCTTCCAAACTAC | + |
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Preference number: 6 (lower is better) Translates to: TAALVNKQHWSH*DTHIQKSLPNY Trigger: GTAGTTTGGAAGAGACTTTTGGATGTGGGTATCTCAATGACTCCAATGTTGCTTGTTTACAAGAGCCGCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS GCA 72 bp | GAGAGATCTACTACAACATTTCCCTCCGCTGTTTTCTaGAGAAGTCCTTTGCTGTCAAGCAACTTTAAGACA | + |
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Preference number: 6 (lower is better) Translates to: ERSTTTFPSAVF*RSPLLSSNFKT Trigger: TGTCTTAAAGTTGCTTGACAGCAAAGGACTTCTGCAGAAAACAGCGGAGGGAAATGTTGTAGTAGATCTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS GCA 72 bp | TCAAACCTGAGAAGATGCTGGAGAATTGAAACAGACTaGGGCTCTTGTAAACAAGCAACATTGGAGTCATTG | + |
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Preference number: 6 (lower is better) Translates to: SNLRRCWRIETD*GSCKQATLESL Trigger: CAATGACTCCAATGTTGCTTGTTTACAAGAGCCGCAGTCTGTTTCAATTCTCCAGCATCTTCTCAGGTTTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS CAA 90 bp | TGCTGGAGAATTGAAACAGACTGCGGCTCTTGTAAACAAGCAACATaGGAGTCATTGAGATACCCACATCCAAAAGTCTCTTCCAAACTA | + |
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Preference number: 6 (lower is better) Translates to: CWRIETDCGSCKQAT*ESLRYPHPKVSSKL Trigger: TAGTTTGGAAGAGACTTTTGGATGTGGGTATCTCAATGACTCCAATGTTGCTTGTTTACAAGAGCCGCAGTCTGTTTCAATTCTCCAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS CAA 90 bp | GCCCATGATCTTCAGCATTTGGAACACTTGCTGAAAATGCCTTCTTaGCCCTTTGTCTGCGACATAAATCATTGTGTCAAAATTGTACTT | + |
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Preference number: 6 (lower is better) Translates to: AHDLQHLEHLLKMPS*PFVCDINHCVKIVL Trigger: AAGTACAATTTTGACACAATGATTTATGTCGCAGACAAAGGGCAAAGAAGGCATTTTCAGCAAGTGTTCCAAATGCTGAAGATCATGGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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| CDS CAA 72 bp | CTTCAGCATTTGGAACACTTGCTGAAAATGCCTTCTTaGCCCTTTGTCTGCGACATAAATCATTGTGTCAAA | + |
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Preference number: 6 (lower is better) Translates to: LQHLEHLLKMPS*PFVCDINHCVK Trigger: TTTGACACAATGATTTATGTCGCAGACAAAGGGCAAAGAAGGCATTTTCAGCAAGTGTTCCAAATGCTGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029968.14 |
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