Pregenerated sensors for RARS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018848Ensembl transcript IDs: ENSMUST00000018992.4
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGGCTGCTGACTTGGTGTCACGATCAGGGGAGGGTTCTCCAAGTCTaGATATGCAGCCCTAATGGCACAGCCAAAGACTTCCTGCAGGCG | + |
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Preference number: 5 (lower is better) Translates to: GLLTWCHDQGRVLQV*ICSPNGTAKDFLQA Trigger: CGCCTGCAGGAAGTCTTTGGCTGTGCCATTAGGGCTGCATATCCAGACTTGGAGAACCCTCCCCTGATCGTGACACCAAGTCAGCAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS GCA 90 bp | CTGACTTGGTGTCACGATCAGGGGAGGGTTCTCCAAGTCTGGATATaGAGCCCTAATGGCACAGCCAAAGACTTCCTGCAGGCGGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: LTWCHDQGRVLQVWI*SPNGTAKDFLQAAV Trigger: AACAGCCGCCTGCAGGAAGTCTTTGGCTGTGCCATTAGGGCTGCATATCCAGACTTGGAGAACCCTCCCCTGATCGTGACACCAAGTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS CCA 90 bp | CATGGCACTATTACACTGATAGTCTCCAAACTTGGGCTGCTGACTTaGTGTCACGATCAGGGGAGGGTTCTCCAAGTCTGGATATGCAGC | + |
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Preference number: 5 (lower is better) Translates to: HGTITLIVSKLGLLT*CHDQGRVLQVWICS Trigger: GCTGCATATCCAGACTTGGAGAACCCTCCCCTGATCGTGACACCAAGTCAGCAGCCCAAGTTTGGAGACTATCAGTGTAATAGTGCCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS CCA 90 bp | TCTGAGAAATACCCATGGCACTATTACACTGATAGTCTCCAAACTTaGGCTGCTGACTTGGTGTCACGATCAGGGGAGGGTTCTCCAAGT | + |
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Preference number: 5 (lower is better) Translates to: SEKYPWHYYTDSLQT*AADLVSRSGEGSPS Trigger: ACTTGGAGAACCCTCCCCTGATCGTGACACCAAGTCAGCAGCCCAAGTTTGGAGACTATCAGTGTAATAGTGCCATGGGTATTTCTCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS GCA 90 bp | TCCAAGTCTGGATATGCAGCCCTAATGGCACAGCCAAAGACTTCCTaGAGGCGGCTGTTGATGTTAATCATGTTTTTAGTTGGTTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: SKSGYAALMAQPKTS*RRLLMLIMFLVGFL Trigger: GAGAAAACCAACTAAAAACATGATTAACATCAACAGCCGCCTGCAGGAAGTCTTTGGCTGTGCCATTAGGGCTGCATATCCAGACTTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS GCA 90 bp | CTATCGTTAATGGCACAGAACACCCAGGCACGAACACAATTTTTCTaGCATCATCCACTTGCACAAACCCTTTATCTTCAAATTCCTTTA | + |
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Preference number: 5 (lower is better) Translates to: LSLMAQNTQARTQFF*HHPLAQTLYLQIPL Trigger: TAAAGGAATTTGAAGATAAAGGGTTTGTGCAAGTGGATGATGGCAGAAAAATTGTGTTCGTGCCTGGGTGTTCTGTGCCATTAACGATAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS CCA 72 bp | CAGAGGGTGTGGAGAAACAGGTCGTCTAAGATCTTCTaGAGGATCTCGGGGAACCGTAAGATGCACCGCCCC | + |
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Preference number: 6 (lower is better) Translates to: QRVWRNRSSKIF*RISGNRKMHRP Trigger: GGGGCGGTGCATCTTACGGTTCCCCGAGATCCTCCAGAAGATCTTAGACGACCTGTTTCTCCACACCCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS CAA 72 bp | CCCAGCTTCCACTCCTTTTCATGGTCCAAAATGATCTaGGTTTCCCGAGCGGCTCTCTGTAGCATCGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: PSFHSFSWSKMI*VSRAALCSIAS Trigger: TGAGGCGATGCTACAGAGAGCCGCTCGGGAAACCAAGATCATTTTGGACCATGAAAAGGAGTGGAAGCTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS CAA 90 bp | CCATGGCACTATTACACTGATAGTCTCCAAACTTGGGCTGCTGACTaGGTGTCACGATCAGGGGAGGGTTCTCCAAGTCTGGATATGCAG | + |
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Preference number: 6 (lower is better) Translates to: PWHYYTDSLQTWAAD*VSRSGEGSPSLDMQ Trigger: CTGCATATCCAGACTTGGAGAACCCTCCCCTGATCGTGACACCAAGTCAGCAGCCCAAGTTTGGAGACTATCAGTGTAATAGTGCCATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS CCA 72 bp | ATTACACTGATAGTCTCCAAACTTGGGCTGCTGACTTaGTGTCACGATCAGGGGAGGGTTCTCCAAGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: ITLIVSKLGLLT*CHDQGRVLQVW Trigger: CCAGACTTGGAGAACCCTCCCCTGATCGTGACACCAAGTCAGCAGCCCAAGTTTGGAGACTATCAGTGTAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS CCA 72 bp | TACCCATGGCACTATTACACTGATAGTCTCCAAACTTaGGCTGCTGACTTGGTGTCACGATCAGGGGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: YPWHYYTDSLQT*AADLVSRSGEG Trigger: ACCCTCCCCTGATCGTGACACCAAGTCAGCAGCCCAAGTTTGGAGACTATCAGTGTAATAGTGCCATGGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS CAA 72 bp | TATTACACTGATAGTCTCCAAACTTGGGCTGCTGACTaGGTGTCACGATCAGGGGAGGGTTCTCCAAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: YYTDSLQTWAAD*VSRSGEGSPSL Trigger: CAGACTTGGAGAACCCTCCCCTGATCGTGACACCAAGTCAGCAGCCCAAGTTTGGAGACTATCAGTGTAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS CAA 72 bp | GACCTGAGGTGGCCAACATGCATCTCCTTAGCTATGTaGGGAGAGGAAAAGTCAACTATAACCTTCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: DLRWPTCISLAM*GEEKSTITFSL Trigger: CAAGGAGAAGGTTATAGTTGACTTTTCCTCTCCCAACATAGCTAAGGAGATGCATGTTGGCCACCTCAGGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS GCA 72 bp | ATGGCACAGAACACCCAGGCACGAACACAATTTTTCTaGCATCATCCACTTGCACAAACCCTTTATCTTCAA | + |
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Preference number: 6 (lower is better) Translates to: MAQNTQARTQFF*HHPLAQTLYLQ Trigger: TTGAAGATAAAGGGTTTGTGCAAGTGGATGATGGCAGAAAAATTGTGTTCGTGCCTGGGTGTTCTGTGCCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS CAA 72 bp | CTAATGGCACAGCCAAAGACTTCCTGCAGGCGGCTGTaGATGTTAATCATGTTTTTAGTTGGTTTTCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: LMAQPKTSCRRL*MLIMFLVGFLL Trigger: AAGGAGAAAACCAACTAAAAACATGATTAACATCAACAGCCGCCTGCAGGAAGTCTTTGGCTGTGCCATTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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| CDS CAA 90 bp | GCCTATACTTCAATTTTAAATTTTCTTCTCGTAACTGTTCCAAACTaGGAGAAGCTTCCAAGCAGCCACAGTTCTTCAGCCGGTCGATCT | + |
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Preference number: 6 (lower is better) Translates to: AYTSILNFLLVTVPN*EKLPSSHSSSAGRS Trigger: AGATCGACCGGCTGAAGAACTGTGGCTGCTTGGAAGCTTCTCCAAGTTTGGAACAGTTACGAGAAGAAAATTTAAAATTGAAGTATAGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018992.4 |
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