Pregenerated sensors for RARRES1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049404Ensembl transcript IDs: ENSMUST00000054825.5
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTTCCCAAAGCAATTGTTaGTCCATCTGCTATGTGGTA | + |
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Preference number: 2 (lower is better) Translates to: YSKVGITLKGNICLRLAVSQSNC*SICYVV Trigger: TACCACATAGCAGATGGATCAACAATTGCTTTGGGA...AACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| 3UTR-3UTR CCA 90 bp | TATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTAGTTCAGCACCACCGTaGTGTTTAGAATATAATAGA | + |
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Preference number: 2 (lower is better) Translates to: YSKVGITLKGNICLRLAVSSAPP*CLEYNR Trigger: TCTATTATATTCTAAACACCACGGTGGTGCTGAACT...AACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| 3UTR-3UTR CAA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCATTCCCAAAGCAATTGTaGATCCATCTGCTATGTGGT | + |
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Preference number: 3 (lower is better) Translates to: TYSKVGITLKGNICLRLAFPKQL*IHLLCG Trigger: ACCACATAGCAGATGGATCAACAATTGCTTTGGGAA...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| 3UTR-3UTR CAA 90 bp | TCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTAATCTTTTCCCAAAGCAATaGTTGATCCATCTGCTATGT | + |
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Preference number: 3 (lower is better) Translates to: SKVGITLKGNICLRLAVNLFPKQ*LIHLLC Trigger: ACATAGCAGATGGATCAACAATTGCTTTGGGAAAAG...ATTAACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR GCA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCACACGCGCGGCCCTCCTaGACGGTGGCCAGCACCCGT | + |
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Preference number: 4 (lower is better) Translates to: TYSKVGITLKGNICLRLAHARPS*TVASTR Trigger: ACGGGTGCTGGCCACCGTGCAGGAGGGCCGCGCGTG...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR CCA 90 bp | TCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTAATGCACCCGTAGCGCGCTaGGCGAGCCCGCGCGGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: SKVGITLKGNICLRLAVNAPVAR*ASPRGS Trigger: ACTTCCGCGCGGGCTCGCCCAGCGCGCTACGGGTGC...ATTAACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR CCA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGGCCCTCCTGCACGGTaGCCAGCACCCGTAGCGCGC | + |
|
Preference number: 4 (lower is better) Translates to: TYSKVGITLKGNICLRLAGPPAR*PAPVAR Trigger: GCGCGCTACGGGTGCTGGCCACCGTGCAGGAGGGCC...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR TCA 90 bp | TCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTAATGGTCCGCGGGCTCAGTaGCAGCAGCGGCCAGTGCGA | + |
|
Preference number: 4 (lower is better) Translates to: SKVGITLKGNICLRLAVNGPRAQ*QQRPVR Trigger: TCGCACTGGCCGCTGCTGTCACTGAGCCCGCGGACC...ATTAACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR GCA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCACCCACGGCCGCGGGCTaGCGGGGGACTTCGGTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: TYSKVGITLKGNICLRLAPTAAG*RGTSVY Trigger: ATACACCGAAGTCCCCCGGCAGCCCGCGGCCGTGGG...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR GCA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGACAGCAGCGGCCAGTaGGAGGCTCGGCAGCAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: TYSKVGITLKGNICLRLADSSGQ*EARQQP Trigger: TGGCTGCTGCCGAGCCTCGCACTGGCCGCTGCTGTC...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR GCA 90 bp | TATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTCGGAAGTTGAAGAAGTaGAGCGCAGCGCGCGCCGCC | + |
|
Preference number: 4 (lower is better) Translates to: YSKVGITLKGNICLRLAVRKLKK*SAARAA Trigger: GGCGGCGCGCGCTGCGCTGCACTTCTTCAACTTCCG...AACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR TCA 90 bp | TATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTCTCCCACATCACGTATaGGCTGCCGAGGAAGGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: YSKVGITLKGNICLRLAVLPHHV*AAEEGQ Trigger: TTGGCCTTCCTCGGCAGCTCATACGTGATGTGGGAG...AACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR TCA 90 bp | TCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTAATGCCGCTCCACACTGCTaGGCTGGACCAAGTAATAGT | + |
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Preference number: 4 (lower is better) Translates to: SKVGITLKGNICLRLAVNAAPHC*AGPSNS Trigger: ACTATTACTTGGTCCAGCTCAGCAGTGTGGAGCGGC...ATTAACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR TCA 90 bp | TCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTAATGACTGTCAGGTATGCTaGTGCTGTGCAGAGGAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: SKVGITLKGNICLRLAVNDCQVC*CCAEES Trigger: AGACTCCTCTGCACAGCATCAGCATACCTGACAGTC...ATTAACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR TCA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCATGGCGGTGCCATAGCTaGTGCTTCCATAGTTCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: TYSKVGITLKGNICLRLAWRCHS*CFHSSR Trigger: TCTGGAACTATGGAAGCATCAGCTATGGCACCGCCA...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR CCA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCATCCAGAGGCTTCTTCTaGGCTCTGCTGCTCTTGACA | + |
|
Preference number: 4 (lower is better) Translates to: TYSKVGITLKGNICLRLASRGFF*ALLLLT Trigger: TGTCAAGAGCAGCAGAGCCCAGAAGAAGCCTCTGGA...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR TCA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGGGTACCAGACCAAGTaGATACGGCAGGGAATGATT | + |
|
Preference number: 4 (lower is better) Translates to: TYSKVGITLKGNICLRLAGYQTK*IRQGMI Trigger: AATCATTCCCTGCCGTATTCACTTGGTCTGGTACCC...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR GCA 90 bp | TCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTAATCCCTCGCAGAACATTTaGCCAAACGTTCACCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: SKVGITLKGNICLRLAVNPSQNI*PNVHLP Trigger: AGGAAGGTGAACGTTTGGGCAAATGTTCTGCGAGGG...ATTAACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR GCA 90 bp | TATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTGGTATGCTGATGCTGTaGAGAGGAGTCTTCAATTGC | + |
|
Preference number: 4 (lower is better) Translates to: YSKVGITLKGNICLRLAVGMLML*RGVFNC Trigger: GCAATTGAAGACTCCTCTGCACAGCATCAGCATACC...AACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR TCA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCACATGAAGCAGAACAGTaGAGTCAAAGTCGATGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: TYSKVGITLKGNICLRLAHEAEQ*SQSRCC Trigger: ACAGCATCGACTTTGACTTCACTGTTCTGCTTCATG...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR TCA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGAATACGGCAGGGAATaGTTTCCTGTGTGGAGAATT | + |
|
Preference number: 4 (lower is better) Translates to: TYSKVGITLKGNICLRLAEYGRE*FPVWRI Trigger: AATTCTCCACACAGGAAATCATTCCCTGCCGTATTC...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR TCA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCATGGGTTTTTCATTCTTaGAAAACACCCTCGCAGAAC | + |
|
Preference number: 4 (lower is better) Translates to: TYSKVGITLKGNICLRLAWVFHS*KTPSQN Trigger: GTTCTGCGAGGGTGTTTTTCAAGAATGAAAAACCCA...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR TCA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCATTATCAATGTGTCCATaGCTGTCAGGTATGCTGATG | + |
|
Preference number: 4 (lower is better) Translates to: TYSKVGITLKGNICLRLALSMCP*LSGMLM Trigger: CATCAGCATACCTGACAGTCATGGACACATTGATAA...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR CCA 90 bp | TATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTTTTAAGGGGTTTACCTaGGTACCAGACCAAGTGAAT | + |
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Preference number: 4 (lower is better) Translates to: YSKVGITLKGNICLRLAVFKGFT*VPDQVN Trigger: ATTCACTTGGTCTGGTACCCAGGTAAACCCCTTAAA...AACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS GCA 90 bp | CCCGCGCGGAAGTTGAAGAAGTGCAGCGCAGCGCGCGCCGCCAGCTaGAGGATCCCGCGTGGCAGCCCCACGGCCGCGGGCTGCCGGGGG | + |
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Preference number: 5 (lower is better) Translates to: PARKLKKCSAARAAS*RIPRGSPTAAGCRG Trigger: CCCCCGGCAGCCCGCGGCCGTGGGGCTGCCACGCGGGATCCTGCAGCTGGCGGCGCGCGCTGCGCTGCACTTCTTCAACTTCCGCGCGGG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS TCA 90 bp | CGGTGGCCAGCACCCGTAGCGCGCTGGGCGAGCCCGCGCGGAAGTTaGAGAAGTGCAGCGCAGCGCGCGCCGCCAGCTGCAGGATCCCGC | + |
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Preference number: 5 (lower is better) Translates to: RWPAPVARWASPRGS*RSAAQRAPPAAGSR Trigger: GCGGGATCCTGCAGCTGGCGGCGCGCGCTGCGCTGCACTTCTTCAACTTCCGCGCGGGCTCGCCCAGCGCGCTACGGGTGCTGGCCACCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS GCA 90 bp | AGCACCCGTAGCGCGCTGGGCGAGCCCGCGCGGAAGTTGAAGAAGTaGAGCGCAGCGCGCGCCGCCAGCTGCAGGATCCCGCGTGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: STRSALGEPARKLKK*SAARAASCRIPRGS Trigger: GCTGCCACGCGGGATCCTGCAGCTGGCGGCGCGCGCTGCGCTGCACTTCTTCAACTTCCGCGCGGGCTCGCCCAGCGCGCTACGGGTGCT 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS GCA 90 bp | TTCGGTGTATTCCAGGTCCGCGGGCTCAGTGACAGCAGCGGCCAGTaGGAGGCTCGGCAGCAGCCAGAGGCTCAGCAACAGCGCTGGCAT | + |
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Preference number: 5 (lower is better) Translates to: FGVFQVRGLSDSSGQ*EARQQPEAQQQRWH Trigger: ATGCCAGCGCTGTTGCTGAGCCTCTGGCTGCTGCCGAGCCTCGCACTGGCCGCTGCTGTCACTGAGCCCGCGGACCTGGAATACACCGAA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS TCA 90 bp | TTGTATTGCTCTGTGCTAAATACCAAGTCCACTTCGCAGCCTTCTTaGGGGTTGACCCACGCGCGGCCCTCCTGCACGGTGGCCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: LYCSVLNTKSTSQPS*GLTHARPSCTVAST Trigger: GGTGCTGGCCACCGTGCAGGAGGGCCGCGCGTGGGTCAACCCTCAAGAAGGCTGCGAAGTGGACTTGGTATTTAGCACAGAGCAATACAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS TCA 90 bp | CAAAGTCGATGCTGTCATCATCCGTTTTCAGCCGCTCCACACTGCTaGGCTGGACCAAGTAATAGTGCAGGACCTGGGTTGTCTTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: QSRCCHHPFSAAPHC*AGPSNSAGPGLSSP Trigger: GGGAGAAGACAACCCAGGTCCTGCACTATTACTTGGTCCAGCTCAGCAGTGTGGAGCGGCTGAAAACGGATGATGACAGCATCGACTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS GCA 90 bp | AATAGTGCAGGACCTGGGTTGTCTTCTCCCACATCACGTATGAGCTaGCGAGGAAGGCCAAGTCCCACAGGGGTCTCAGTGAATTATCAA | + |
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Preference number: 5 (lower is better) Translates to: NSAGPGLSSPTSRMS*RGRPSPTGVSVNYQ Trigger: TTGATAATTCACTGAGACCCCTGTGGGACTTGGCCTTCCTCGGCAGCTCATACGTGATGTGGGAGAAGACAACCCAGGTCCTGCACTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS GCA 90 bp | TTGAAAAACACCCTCGCAGAACATTTGCCCAAACGTTCACCTTCCTaGTCGGGGTTGTATTGCTCTGTGCTAAATACCAAGTCCACTTCG | + |
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Preference number: 5 (lower is better) Translates to: LKNTLAEHLPKRSPS*SGLYCSVLNTKSTS Trigger: CGAAGTGGACTTGGTATTTAGCACAGAGCAATACAACCCCGAGCAGGAAGGTGAACGTTTGGGCAAATGTTCTGCGAGGGTGTTTTTCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CCA 90 bp | GCTCTGCTGCTCTTGACAGTGGTAATTGACTTTAAGGGGTTTACCTaGGTACCAGACCAAGTGAATACGGCAGGGAATGATTTCCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: ALLLLTVVIDFKGFT*VPDQVNTAGNDFLC Trigger: ACACAGGAAATCATTCCCTGCCGTATTCACTTGGTCTGGTACCCAGGTAAACCCCTTAAAGTCAATTACCACTGTCAAGAGCAGCAGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS TCA 90 bp | GGGGTCTCAGTGAATTATCAATGTGTCCATGACTGTCAGGTATGCTaGTGCTGTGCAGAGGAGTCTTCAATTGCTTCATCTGCTTGTAAA | + |
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Preference number: 5 (lower is better) Translates to: GVSVNYQCVHDCQVC*CCAEESSIASSACK Trigger: TTTACAAGCAGATGAAGCAATTGAAGACTCCTCTGCACAGCATCAGCATACCTGACAGTCATGGACACATTGATAATTCACTGAGACCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS GCA 90 bp | AAGCCGATAATCCTTCTCTTGTCTCTTCACTTTATCAAAGAGCCGTaGGCACGTTACATTAACGGCCGGTCTGGGTTTTTCATTCTTGAA | + |
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Preference number: 5 (lower is better) Translates to: KPIILLLSLHFIKEP*ARYINGRSGFFILE Trigger: TTCAAGAATGAAAAACCCAGACCGGCCGTTAATGTAACGTGCGCACGGCTCTTTGATAAAGTGAAGAGACAAGAGAAGGATTATCGGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR CAA 90 bp | TATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTAGTGCAGGACCTGGGTaGTCTTCTCCCACATCACGT | + |
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Preference number: 5 (lower is better) Translates to: YSKVGITLKGNICLRLAVSAGPG*SSPTSR Trigger: ACGTGATGTGGGAGAAGACAACCCAGGTCCTGCACT...AACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR CAA 90 bp | TCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTAATCTGCTCGGGGTTGTATaGCTCTGTGCTAAATACCAA | + |
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Preference number: 5 (lower is better) Translates to: SKVGITLKGNICLRLAVNLLGVV*LCAKYQ Trigger: TTGGTATTTAGCACAGAGCAATACAACCCCGAGCAG...ATTAACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR CAA 90 bp | ACTTATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCATGGGCTCTGCTGCTCTaGACAGTGGTAATTGACTTT | + |
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Preference number: 5 (lower is better) Translates to: TYSKVGITLKGNICLRLAWALLL*TVVIDF Trigger: AAAGTCAATTACCACTGTCAAGAGCAGCAGAGCCCA...TGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATAAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR CAA 90 bp | TCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTAATCTGGGTTTTTCATTCTaGAAAAACACCCTCGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: SKVGITLKGNICLRLAVNLGFSF*KNTLAE Trigger: TTCTGCGAGGGTGTTTTTCAAGAATGAAAAACCCAG...ATTAACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR CAA 90 bp | TATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTCAGAGGAGTCTTCAATaGCTTCATCTGCTTGTAAAG | + |
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Preference number: 5 (lower is better) Translates to: YSKVGITLKGNICLRLAVQRSLQ*LHLLVK Trigger: CTTTACAAGCAGATGAAGCAATTGAAGACTCCTCTG...AACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS-3UTR CAA 90 bp | TATTCGAAAGTGGGTATCACGCTAAAAGGAAATATTTGCCTGAGATTAGCAGTTCCGATAATCCTTCTCTaGTCTCTTCACTTTATCAAA | + |
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Preference number: 5 (lower is better) Translates to: YSKVGITLKGNICLRLAVPIILL*SLHFIK Trigger: TTTGATAAAGTGAAGAGACAAGAGAAGGATTATCGG...AACTGCTAATCTCAGGCAAATATTTCCTTTTAGCGTGATACCCACTTTCGAATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CAA 90 bp | ACGGTGGCCAGCACCCGTAGCGCGCTGGGCGAGCCCGCGCGGAAGTaGAAGAAGTGCAGCGCAGCGCGCGCCGCCAGCTGCAGGATCCCG | + |
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Preference number: 6 (lower is better) Translates to: TVASTRSALGEPARK*KKCSAARAASCRIP Trigger: CGGGATCCTGCAGCTGGCGGCGCGCGCTGCGCTGCACTTCTTCAACTTCCGCGCGGGCTCGCCCAGCGCGCTACGGGTGCTGGCCACCGT 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS TCA 72 bp | GGGGGACTTCGGTGTATTCCAGGTCCGCGGGCTCAGTaGCAGCAGCGGCCAGTGCGAGGCTCGGCAGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: GGLRCIPGPRAQ*QQRPVRGSAAA Trigger: GGCTGCTGCCGAGCCTCGCACTGGCCGCTGCTGTCACTGAGCCCGCGGACCTGGAATACACCGAAGTCCCCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS TCA 72 bp | TCTGTGCTAAATACCAAGTCCACTTCGCAGCCTTCTTaGGGGTTGACCCACGCGCGGCCCTCCTGCACGGTG | + |
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Preference number: 6 (lower is better) Translates to: SVLNTKSTSQPS*GLTHARPSCTV Trigger: CACCGTGCAGGAGGGCCGCGCGTGGGTCAACCCTCAAGAAGGCTGCGAAGTGGACTTGGTATTTAGCACAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS TCA 72 bp | GTGCAGGACCTGGGTTGTCTTCTCCCACATCACGTATaGGCTGCCGAGGAAGGCCAAGTCCCACAGGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: VQDLGCLLPHHV*AAEEGQVPQGS Trigger: AGACCCCTGTGGGACTTGGCCTTCCTCGGCAGCTCATACGTGATGTGGGAGAAGACAACCCAGGTCCTGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CAA 72 bp | CTCTGTGCTAAATACCAAGTCCACTTCGCAGCCTTCTaGAGGGTTGACCCACGCGCGGCCCTCCTGCACGGT | + |
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Preference number: 6 (lower is better) Translates to: LCAKYQVHFAAF*RVDPRAALLHG Trigger: ACCGTGCAGGAGGGCCGCGCGTGGGTCAACCCTCAAGAAGGCTGCGAAGTGGACTTGGTATTTAGCACAGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CAA 90 bp | GTTGTATTGCTCTGTGCTAAATACCAAGTCCACTTCGCAGCCTTCTaGAGGGTTGACCCACGCGCGGCCCTCCTGCACGGTGGCCAGCAC | + |
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Preference number: 6 (lower is better) Translates to: VVLLCAKYQVHFAAF*RVDPRAALLHGGQH Trigger: GTGCTGGCCACCGTGCAGGAGGGCCGCGCGTGGGTCAACCCTCAAGAAGGCTGCGAAGTGGACTTGGTATTTAGCACAGAGCAATACAAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS TCA 72 bp | TGCTGTCATCATCCGTTTTCAGCCGCTCCACACTGCTaGGCTGGACCAAGTAATAGTGCAGGACCTGGGTTG | + |
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Preference number: 6 (lower is better) Translates to: CCHHPFSAAPHC*AGPSNSAGPGL Trigger: CAACCCAGGTCCTGCACTATTACTTGGTCCAGCTCAGCAGTGTGGAGCGGCTGAAAACGGATGATGACAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CAA 90 bp | CGCAGAACATTTGCCCAAACGTTCACCTTCCTGCTCGGGGTTGTATaGCTCTGTGCTAAATACCAAGTCCACTTCGCAGCCTTCTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: RRTFAQTFTFLLGVV*LCAKYQVHFAAFLR Trigger: CCTCAAGAAGGCTGCGAAGTGGACTTGGTATTTAGCACAGAGCAATACAACCCCGAGCAGGAAGGTGAACGTTTGGGCAAATGTTCTGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CAA 90 bp | ACCCTCGCAGAACATTTGCCCAAACGTTCACCTTCCTGCTCGGGGTaGTATTGCTCTGTGCTAAATACCAAGTCCACTTCGCAGCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: TLAEHLPKRSPSCSG*YCSVLNTKSTSQPS Trigger: AGAAGGCTGCGAAGTGGACTTGGTATTTAGCACAGAGCAATACAACCCCGAGCAGGAAGGTGAACGTTTGGGCAAATGTTCTGCGAGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS GCA 72 bp | TTGCCCAAACGTTCACCTTCCTGCTCGGGGTTGTATTaGTCTGTGCTAAATACCAAGTCCACTTCGCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: LPKRSPSCSGLY*SVLNTKSTSQP Trigger: AGGCTGCGAAGTGGACTTGGTATTTAGCACAGAGCAATACAACCCCGAGCAGGAAGGTGAACGTTTGGGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CAA 72 bp | TTTGCCCAAACGTTCACCTTCCTGCTCGGGGTTGTATaGCTCTGTGCTAAATACCAAGTCCACTTCGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: FAQTFTFLLGVV*LCAKYQVHFAA Trigger: GGCTGCGAAGTGGACTTGGTATTTAGCACAGAGCAATACAACCCCGAGCAGGAAGGTGAACGTTTGGGCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CAA 90 bp | AGCCGTGCGCACGTTACATTAACGGCCGGTCTGGGTTTTTCATTCTaGAAAAACACCCTCGCAGAACATTTGCCCAAACGTTCACCTTCC | + |
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Preference number: 6 (lower is better) Translates to: SRAHVTLTAGLGFSF*KNTLAEHLPKRSPS Trigger: GGAAGGTGAACGTTTGGGCAAATGTTCTGCGAGGGTGTTTTTCAAGAATGAAAAACCCAGACCGGCCGTTAATGTAACGTGCGCACGGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS GCA 72 bp | ACCCTCGCAGAACATTTGCCCAAACGTTCACCTTCCTaGTCGGGGTTGTATTGCTCTGTGCTAAATACCAAG | + |
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Preference number: 6 (lower is better) Translates to: TLAEHLPKRSPS*SGLYCSVLNTK Trigger: CTTGGTATTTAGCACAGAGCAATACAACCCCGAGCAGGAAGGTGAACGTTTGGGCAAATGTTCTGCGAGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CAA 72 bp | GAACATTTGCCCAAACGTTCACCTTCCTGCTCGGGGTaGTATTGCTCTGTGCTAAATACCAAGTCCACTTCG | + |
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Preference number: 6 (lower is better) Translates to: EHLPKRSPSCSG*YCSVLNTKSTS Trigger: CGAAGTGGACTTGGTATTTAGCACAGAGCAATACAACCCCGAGCAGGAAGGTGAACGTTTGGGCAAATGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS GCA 72 bp | ATCCTTCTCTTGTCTCTTCACTTTATCAAAGAGCCGTaGGCACGTTACATTAACGGCCGGTCTGGGTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: ILLLSLHFIKEP*ARYINGRSGFF Trigger: GAAAAACCCAGACCGGCCGTTAATGTAACGTGCGCACGGCTCTTTGATAAAGTGAAGAGACAAGAGAAGGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS TCA 72 bp | TTGACTTTAAGGGGTTTACCTGGGTACCAGACCAAGTaGATACGGCAGGGAATGATTTCCTGTGTGGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: LTLRGLPGYQTK*IRQGMISCVEN Trigger: ATTCTCCACACAGGAAATCATTCCCTGCCGTATTCACTTGGTCTGGTACCCAGGTAAACCCCTTAAAGTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CCA 72 bp | CTCTTGACAGTGGTAATTGACTTTAAGGGGTTTACCTaGGTACCAGACCAAGTGAATACGGCAGGGAATGAT | + |
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Preference number: 6 (lower is better) Translates to: LLTVVIDFKGFT*VPDQVNTAGND Trigger: ATCATTCCCTGCCGTATTCACTTGGTCTGGTACCCAGGTAAACCCCTTAAAGTCAATTACCACTGTCAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CAA 72 bp | GTCAGGTATGCTGATGCTGTGCAGAGGAGTCTTCAATaGCTTCATCTGCTTGTAAAGCCGATAATCCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: VRYADAVQRSLQ*LHLLVKPIILL Trigger: GAGAAGGATTATCGGCTTTACAAGCAGATGAAGCAATTGAAGACTCCTCTGCACAGCATCAGCATACCTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CAA 90 bp | TCCATGACTGTCAGGTATGCTGATGCTGTGCAGAGGAGTCTTCAATaGCTTCATCTGCTTGTAAAGCCGATAATCCTTCTCTTGTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: SMTVRYADAVQRSLQ*LHLLVKPIILLLSL Trigger: AAGAGACAAGAGAAGGATTATCGGCTTTACAAGCAGATGAAGCAATTGAAGACTCCTCTGCACAGCATCAGCATACCTGACAGTCATGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS TCA 72 bp | ATACGGCAGGGAATGATTTCCTGTGTGGAGAATTCATaGAGCAGAACAGTGAAGTCAAAGTCGATGCTGTCA | + |
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Preference number: 6 (lower is better) Translates to: IRQGMISCVENS*SRTVKSKSMLS Trigger: TGACAGCATCGACTTTGACTTCACTGTTCTGCTTCATGAATTCTCCACACAGGAAATCATTCCCTGCCGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CAA 72 bp | TTGCTTCATCTGCTTGTAAAGCCGATAATCCTTCTCTaGTCTCTTCACTTTATCAAAGAGCCGTGCGCACGT | + |
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Preference number: 6 (lower is better) Translates to: LLHLLVKPIILL*SLHFIKEPCAR Trigger: ACGTGCGCACGGCTCTTTGATAAAGTGAAGAGACAAGAGAAGGATTATCGGCTTTACAAGCAGATGAAGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS TCA 72 bp | GTGAATTATCAATGTGTCCATGACTGTCAGGTATGCTaGTGCTGTGCAGAGGAGTCTTCAATTGCTTCATCT | + |
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Preference number: 6 (lower is better) Translates to: VNYQCVHDCQVC*CCAEESSIASS Trigger: AGATGAAGCAATTGAAGACTCCTCTGCACAGCATCAGCATACCTGACAGTCATGGACACATTGATAATTCAC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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| CDS CAA 90 bp | AGTCTTCAATTGCTTCATCTGCTTGTAAAGCCGATAATCCTTCTCTaGTCTCTTCACTTTATCAAAGAGCCGTGCGCACGTTACATTAAC | + |
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Preference number: 6 (lower is better) Translates to: SLQLLHLLVKPIILL*SLHFIKEPCARYIN Trigger: GTTAATGTAACGTGCGCACGGCTCTTTGATAAAGTGAAGAGACAAGAGAAGGATTATCGGCTTTACAAGCAGATGAAGCAATTGAAGACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054825.5 |
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