Pregenerated sensors for RARG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001288Ensembl transcript IDs: ENSMUST00000043172.15, ENSMUST00000063339.14, ENSMUST00000135466.2
Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGTTTGCTCCCAGAGGCCCAAGCACCTGGCAGAGGAAAAGGCTATaGGAAGGCGGGGCTTCCTCTTGCGTCGGGAGCCTGTGGCCTGAA | + |
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Preference number: 1 (lower is better) Translates to: LFAPRGPSTWQRKRL*EGGASSCVGSLWPE Trigger: TTCAGGCCACAGGCTCCCGACGCAAGAGGAAGCCCCGCCTTCCCATAGCCTTTTCCTCTGCCAGGTGCTTGGGCCTCTGGGAGCAAACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| 3UTR-3UTR GCA 90 bp | TGGAGGGCCCAGGATGAGTGCTGTACTTCAGCAGAGGTACAGACGGGCTCGGGCAAATGGTCAGTCTGCTaGCTGGGGCCCAACCCCACA | + |
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Preference number: 2 (lower is better) Translates to: WRAQDECCTSAEVQTGSGKWSVC*LGPNPT Trigger: TGTGGGGTTGGGCCCCAGGCAGCAGACTGACCATTT...GCCCGAGCCCGTCTGTACCTCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| 3UTR-3UTR CCA 90 bp | TGGAGGGCCCAGGATGAGTGCTGTACTTCAGCAGAGGTACAGACGGGCTCGGGCAGCTCATTAAAAGGGTaGAGAGTGGGCGGGGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: WRAQDECCTSAEVQTGSGSSLKG*RVGGAG Trigger: ACCTGCCCCGCCCACTCTCCACCCTTTTAATGAGCT...GCCCGAGCCCGTCTGTACCTCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| 3UTR-3UTR CCA 90 bp | AATGGAGGGCCCAGGATGAGTGCTGTACTTCAGCAGAGGTACAGACGGGCTCGGGCGGTATCTGGGAAATaGTCAGTCTGCTGCCTGGGG | + |
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Preference number: 2 (lower is better) Translates to: NGGPRMSAVLQQRYRRARAVSGK*SVCCLG Trigger: CCCCAGGCAGCAGACTGACCATTTCCCAGATACCGC...CCGAGCCCGTCTGTACCTCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| 3UTR-3UTR CCA 90 bp | TGGAGGGCCCAGGATGAGTGCTGTACTTCAGCAGAGGTACAGACGGGCTCGGGCGTCACTGGCGGTATCTaGGAAATGGTCAGTCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: WRAQDECCTSAEVQTGSGVTGGI*EMVSLL Trigger: CAGCAGACTGACCATTTCCCAGATACCGCCAGTGAC...GCCCGAGCCCGTCTGTACCTCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| 3UTR-3UTR CCA 90 bp | CAGAGGAAAAGGCTATGGGAAGGCGGGGCTTCCTCTTGCGTCGGGAGCCTGTGGGTCACTGGCGGTATCTaGGAAATGGTCAGTCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: QRKRLWEGGASSCVGSLWVTGGI*EMVSLL Trigger: CAGCAGACTGACCATTTCCCAGATACCGCCAGTGAC...CCACAGGCTCCCGACGCAAGAGGAAGCCCCGCCTTCCCATAGCCTTTTCCTCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| 3UTR-3UTR CCA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAAGGTCAGTCTGCTGCCTaGGGCCCAACCCCACAACGG | + |
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Preference number: 2 (lower is better) Translates to: GMNTGTPRNFGKITSSLKGQSAA*GPTPQR Trigger: CCGTTGTGGGGTTGGGCCCCAGGCAGCAGACTGACC...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| 3UTR-3UTR GCA 90 bp | CCAGAGAAATGGGGGAGCCTGCAGGAATCTTATTTGGCAGCTAAATATAAACTGAGTGTAGGAGGGCCCTaGCTGATGGCTGAGATGAGG | + |
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Preference number: 2 (lower is better) Translates to: PEKWGSLQESYLAAKYKLSVGGP*LMAEMR Trigger: CCTCATCTCAGCCATCAGGCAGGGCCCTCCTACACT...CAGTTTATATTTAGCTGCCAAATAAGATTCCTGCAGGCTCCCCCATTTCTCTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| 3UTR-3UTR TCA 90 bp | CCAGAGAAATGGGGGAGCCTGCAGGAATCTTATTTGGCAGCTAAATATAAACTGATGGAGGGCCCAGGATaGGTGCTGTACTTCAGCAGA | + |
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Preference number: 2 (lower is better) Translates to: PEKWGSLQESYLAAKYKLMEGPG*VLYFSR Trigger: TCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCAT...CAGTTTATATTTAGCTGCCAAATAAGATTCCTGCAGGCTCCCCCATTTCTCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| 3UTR-3UTR GCA 90 bp | CCAGAGAAATGGGGGAGCCTGCAGGAATCTTATTTGGCAGCTAAATATAAACTGTCTAGTGTTCCTGTTTaGTCCCAGAGGCCCAAGCAC | + |
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Preference number: 2 (lower is better) Translates to: PEKWGSLQESYLAAKYKLSSVPV*SQRPKH Trigger: GTGCTTGGGCCTCTGGGAGCAAACAGGAACACTAGA...CAGTTTATATTTAGCTGCCAAATAAGATTCCTGCAGGCTCCCCCATTTCTCTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| 3UTR CCA 72 bp | CCCAGAGGCCCAAGCACCTGGCAGAGGAAAAGGCTATaGGAAGGCGGGGCTTCCTCTTGCGTCGGGAGCCTG | + |
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Preference number: 3 (lower is better) Translates to: PRGPSTWQRKRL*EGGASSCVGSL Trigger: CAGGCTCCCGACGCAAGAGGAAGCCCCGCCTTCCCATAGCCTTTTCCTCTGCCAGGTGCTTGGGCCTCTGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| 3UTR TCA 72 bp | AGTAAGGGAGAGGCTTATATAATGGAGGGCCCAGGATaGGTGCTGTACTTCAGCAGAGGTACAGACGGGCTC | + |
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Preference number: 3 (lower is better) Translates to: SKGEAYIMEGPG*VLYFSRGTDGL Trigger: GAGCCCGTCTGTACCTCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCATTATATAAGCCTCTCCCTTACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| 3UTR CCA 72 bp | GAATCTTATTTGGCAGCTAAATATAAACTGGGGGCTTaGGGAAAGAAAGGAAGGGGTCACAGAGGCCCTGGG | + |
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Preference number: 3 (lower is better) Translates to: ESYLAAKYKLGA*GKKGRGHRGPG Trigger: CCCAGGGCCTCTGTGACCCCTTCCTTTCTTTCCCCAAGCCCCCAGTTTATATTTAGCTGCCAAATAAGATTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | AGAGTCAGGCGCTCAGGGTGGGGCACAAGGGTGGGCTCAGCCCTCCCTCGGGGGTTGGGGAGGTCAGGCTaGCCCAGGCCCCGGAAGCTA | + |
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Preference number: 4 (lower is better) Translates to: RVRRSGWGTRVGSALPRGLGRSG*PRPRKL Trigger: TAGCTTCCGGGGCCTGGGCCAGCCTGACCTCCCCAA...CCCCCGAGGGAGGGCTGAGCCCACCCTTGTGCCCCACCCTGAGCGCCTGACTCT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000043172.15 |
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| CDS-3UTR TCA 90 bp | AGAGTCAGGCGCTCAGGGTGGGGCACAAGGGTGGGCTCAGCCCTCCCTCGGGGGTCCAGCTGCACCCGGTaGTCTGCACTGGAGTTCGTG | + |
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Preference number: 4 (lower is better) Translates to: RVRRSGWGTRVGSALPRGSSCTR*SALEFV Trigger: CACGAACTCCAGTGCAGATCACCGGGTGCAGCTGGA...CCCCCGAGGGAGGGCTGAGCCCACCCTTGTGCCCCACCCTGAGCGCCTGACTCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR GCA 90 bp | ACACAGAGTCAGGCGCTCAGGGTGGGGCACAAGGGTGGGCTCAGCCCTCCCTCGAGCTGCCAGTGGCTCTaGGTAGTAAGCCGGCCCCGG | + |
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Preference number: 4 (lower is better) Translates to: TQSQALRVGHKGGLSPPSSCQWL*VVSRPR Trigger: CCGGGGCCGGCTTACTACGCAGAGCCACTGGCAGCT...CGAGGGAGGGCTGAGCCCACCCTTGTGCCCCACCCTGAGCGCCTGACTCTGTGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | ACACAGAGTCAGGCGCTCAGGGTGGGGCACAAGGGTGGGCTCAGCCCTCCCTCGCTCTCGGATCAGGGGTaGCATCGGGCCTGGAATCTC | + |
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Preference number: 4 (lower is better) Translates to: TQSQALRVGHKGGLSPPSLSDQG*HRAWNL Trigger: GAGATTCCAGGCCCGATGCCACCCCTGATCCGAGAG...CGAGGGAGGGCTGAGCCCACCCTTGTGCCCCACCCTGAGCGCCTGACTCTGTGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR TCA 90 bp | CCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGTCAGTCTGCTGCCTGGGGCCTGGTGGCCAGCTCGCTaGACTTGTCCCACAGCCCCA | + |
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Preference number: 4 (lower is better) Translates to: PPPVTGGIWEMVSLLPGAWWPAR*TCPTAP Trigger: TGGGGCTGTGGGACAAGTTCAGCGAGCTGGCCACCA...GGCCCCAGGCAGCAGACTGACCATTTCCCAGATACCGCCAGTGACTGGGGGAGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR GCA 90 bp | GGAGAGTGGGCGGGGCAGGTCCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGCGGCGAAGCAGGAGCTaGCAGTGGCTCTGCGTAGTA | + |
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Preference number: 4 (lower is better) Translates to: GEWAGQVLPQSLAVSGKWRRSRS*QWLCVV Trigger: TACTACGCAGAGCCACTGGCAGCTCCTGCTTCGCCG...CCATTTCCCAGATACCGCCAGTGACTGGGGGAGGACCTGCCCCGCCCACTCTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | GGGGGCACTGAGCGCGGCAGATTCATCACACAGAGTCAGGCGCTCAGGGTGGGGCTGCACTGGAGTTCGTaGTGTACTTGCCCAGCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: GGTERGRFITQSQALRVGLHWSS*CTCPAG Trigger: GCCAGCTGGGCAAGTACACCACGAACTCCAGTGCAG...CCCCACCCTGAGCGCCTGACTCTGTGTGATGAATCTGCCGCGCTCAGTGCCCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | TGGAGGGCCCAGGATGAGTGCTGTACTTCAGCAGAGGTACAGACGGGCTCGGGCGAGCTTCGTCCTCACTaGAAGCCTTGGGGTGGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: WRAQDECCTSAEVQTGSGELRPH*KPWGGG Trigger: GCCCCCACCCCAAGGCTTCCAGTGAGGACGAAGCTC...GCCCGAGCCCGTCTGTACCTCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR TCA 90 bp | TCCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGTCAGTCTGCTGCCTGGGGCTCCAGCTGCACCCGGTaGTCTGCACTGGAGTTCGTG | + |
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Preference number: 4 (lower is better) Translates to: SSPSHWRYLGNGQSAAWGSSCTR*SALEFV Trigger: CACGAACTCCAGTGCAGATCACCGGGTGCAGCTGGA...GCCCCAGGCAGCAGACTGACCATTTCCCAGATACCGCCAGTGACTGGGGGAGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR TCA 90 bp | GGAGAGTGGGCGGGGCAGGTCCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGTGCCCCGGAGGTCGGTaGTTTTCATCAGCATCCTTG | + |
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Preference number: 4 (lower is better) Translates to: GEWAGQVLPQSLAVSGKWCPGGR*FSSASL Trigger: CAAGGATGCTGATGAAAATCACCGACCTCCGGGGCA...CCATTTCCCAGATACCGCCAGTGACTGGGGGAGGACCTGCCCCGCCCACTCTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR GCA 90 bp | GGGGGCACTGAGCGCGGCAGATTCATCACACAGAGTCAGGCGCTCAGGGTGGGGTCTCCTCCGAGCTGGTaGTCTGTGTCTCCACCGATT | + |
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Preference number: 4 (lower is better) Translates to: GGTERGRFITQSQALRVGSPPSW*SVSPPI Trigger: AATCGGTGGAGACACAGAGCACCAGCTCGGAGGAGA...CCCCACCCTGAGCGCCTGACTCTGTGTGATGAATCTGCCGCGCTCAGTGCCCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | ACACAGAGTCAGGCGCTCAGGGTGGGGCACAAGGGTGGGCTCAGCCCTCCCTCGGTGTACTTGCCCAGCTaGCAGAGTGAGGGAAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: TQSQALRVGHKGGLSPPSVYLPS*QSEGKV Trigger: GACTTTTCCCTCACTCTGCCAGCTGGGCAAGTACAC...CGAGGGAGGGCTGAGCCCACCCTTGTGCCCCACCCTGAGCGCCTGACTCTGTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | CAGAGGAAAAGGCTATGGGAAGGCGGGGCTTCCTCTTGCGTCGGGAGCCTGTGGCTCTCGGATCAGGGGTaGCATCGGGCCTGGAATCTC | + |
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Preference number: 4 (lower is better) Translates to: QRKRLWEGGASSCVGSLWLSDQG*HRAWNL Trigger: GAGATTCCAGGCCCGATGCCACCCCTGATCCGAGAG...CCACAGGCTCCCGACGCAAGAGGAAGCCCCGCCTTCCCATAGCCTTTTCCTCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | GGGGGCACTGAGCGCGGCAGATTCATCACACAGAGTCAGGCGCTCAGGGTGGGGGGAAAAGTCTCCTGGTaGGCTTTGCTGACCTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: GGTERGRFITQSQALRVGGKVSW*ALLTLV Trigger: CACCAAGGTCAGCAAAGCCCACCAGGAGACTTTTCC...CCCCACCCTGAGCGCCTGACTCTGTGTGATGAATCTGCCGCGCTCAGTGCCCCC 61% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | GGGGGCACTGAGCGCGGCAGATTCATCACACAGAGTCAGGCGCTCAGGGTGGGGGAGGGAAAAGTCTCCTaGTGGGCTTTGCTGACCTTG | + |
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Preference number: 4 (lower is better) Translates to: GGTERGRFITQSQALRVGEGKVS*WALLTL Trigger: CAAGGTCAGCAAAGCCCACCAGGAGACTTTTCCCTC...CCCCACCCTGAGCGCCTGACTCTGTGTGATGAATCTGCCGCGCTCAGTGCCCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | TGGAGGGCCCAGGATGAGTGCTGTACTTCAGCAGAGGTACAGACGGGCTCGGGCCTGCACTGGAGTTCGTaGTGTACTTGCCCAGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: WRAQDECCTSAEVQTGSGLHWSS*CTCPAG Trigger: GCCAGCTGGGCAAGTACACCACGAACTCCAGTGCAG...GCCCGAGCCCGTCTGTACCTCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | CCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGTCAGTCTGCTGCCTGGGGCCTTGAGCAGCGTGATCTaGTCGGCAATGCTGAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: PPPVTGGIWEMVSLLPGALSSVI*SAMLSP Trigger: AGGGCTCAGCATTGCCGACCAGATCACGCTGCTCAA...GGCCCCAGGCAGCAGACTGACCATTTCCCAGATACCGCCAGTGACTGGGGGAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | CCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGTCAGTCTGCTGCCTGGGGCCGAGGGAAAAGTCTCCTaGTGGGCTTTGCTGACCTTG | + |
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Preference number: 4 (lower is better) Translates to: PPPVTGGIWEMVSLLPGAEGKVS*WALLTL Trigger: CAAGGTCAGCAAAGCCCACCAGGAGACTTTTCCCTC...GGCCCCAGGCAGCAGACTGACCATTTCCCAGATACCGCCAGTGACTGGGGGAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | CAGAGGAAAAGGCTATGGGAAGGCGGGGCTTCCTCTTGCGTCGGGAGCCTGTGGGTGTACTTGCCCAGCTaGCAGAGTGAGGGAAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: QRKRLWEGGASSCVGSLWVYLPS*QSEGKV Trigger: GACTTTTCCCTCACTCTGCCAGCTGGGCAAGTACAC...CCACAGGCTCCCGACGCAAGAGGAAGCCCCGCCTTCCCATAGCCTTTTCCTCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR GCA 90 bp | GCCTGTGGCCTGAATCCGAAAGGCAGTGCTGAGATTTTAGAGTCTAGACCCAGGTGGCGACCCTCTGAGTaGACCTGGGAAGGCGAATGG | + |
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Preference number: 4 (lower is better) Translates to: ACGLNPKGSAEILESRPRWRPSE*TWEGEW Trigger: CCATTCGCCTTCCCAGGTGCACTCAGAGGGTCGCCA...CCTGGGTCTAGACTCTAAAATCTCAGCACTGCCTTTCGGATTCAGGCCACAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043172.15 |
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| CDS-3UTR GCA 90 bp | GGAGAGTGGGCGGGGCAGGTCCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGAATGTCATAGTGTCCTaGTCTGGGGTATACCTTGTA | + |
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Preference number: 4 (lower is better) Translates to: GEWAGQVLPQSLAVSGKWNVIVS*SGVYLV Trigger: TACAAGGTATACCCCAGAGCAGGACACTATGACATT...CCATTTCCCAGATACCGCCAGTGACTGGGGGAGGACCTGCCCCGCCCACTCTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | GCCTGTGGCCTGAATCCGAAAGGCAGTGCTGAGATTTTAGAGTCTAGACCCAGGCCATCTCCTCCGAGCTaGTGCTCTGTGTCTCCACCG | + |
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Preference number: 4 (lower is better) Translates to: ACGLNPKGSAEILESRPRPSPPS*CSVSPP Trigger: CGGTGGAGACACAGAGCACCAGCTCGGAGGAGATGG...CCTGGGTCTAGACTCTAAAATCTCAGCACTGCCTTTCGGATTCAGGCCACAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | TGGGCGGGGCAGGTCCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGTCAGTCCATAGTGTCCTGCTCTaGGGTATACCTTGTACAGAT | + |
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Preference number: 4 (lower is better) Translates to: WAGQVLPQSLAVSGKWSVHSVLL*GIPCTD Trigger: ATCTGTACAAGGTATACCCCAGAGCAGGACACTATG...GACTGACCATTTCCCAGATACCGCCAGTGACTGGGGGAGGACCTGCCCCGCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | CTAGTGTTCCTGTTTGCTCCCAGAGGCCCAAGCACCTGGCAGAGGAAAAGGCTAGCTCAGCATCTCAAATaGTGGCGACCCTCTGAGTGC | + |
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Preference number: 4 (lower is better) Translates to: LVFLFAPRGPSTWQRKRLAQHLK*WRPSEC Trigger: GCACTCAGAGGGTCGCCACCATTTGAGATGCTGAGC...TAGCCTTTTCCTCTGCCAGGTGCTTGGGCCTCTGGGAGCAAACAGGAACACTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043172.15 |
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| CDS-3UTR CCA 90 bp | TGGAGGGCCCAGGATGAGTGCTGTACTTCAGCAGAGGTACAGACGGGCTCGGGCTTTCATCAGCATCCTTaGGAACATGTAGGGTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: WRAQDECCTSAEVQTGSGFHQHP*EHVGLA Trigger: AGCCAACCCTACATGTTCCCAAGGATGCTGATGAAA...GCCCGAGCCCGTCTGTACCTCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR TCA 90 bp | GCCTGTGGCCTGAATCCGAAAGGCAGTGCTGAGATTTTAGAGTCTAGACCCAGGTGCCCCGGAGGTCGGTaGTTTTCATCAGCATCCTTG | + |
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Preference number: 4 (lower is better) Translates to: ACGLNPKGSAEILESRPRCPGGR*FSSASL Trigger: CAAGGATGCTGATGAAAATCACCGACCTCCGGGGCA...CCTGGGTCTAGACTCTAAAATCTCAGCACTGCCTTTCGGATTCAGGCCACAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR GCA 90 bp | GGAGAGTGGGCGGGGCAGGTCCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGCAGAAGACTTGTCATTaGATACAAAGCATGGCTTAT | + |
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Preference number: 4 (lower is better) Translates to: GEWAGQVLPQSLAVSGKWQKTCH*IQSMAY Trigger: ATAAGCCATGCTTTGTATGCAATGACAAGTCTTCTG...CCATTTCCCAGATACCGCCAGTGACTGGGGGAGGACCTGCCCCGCCCACTCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR TCA 90 bp | CCAGAGAAATGGGGGAGCCTGCAGGAATCTTATTTGGCAGCTAAATATAAACTGTGGTGGCCAGCTCGCTaGACTTGTCCCACAGCCCCA | + |
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Preference number: 4 (lower is better) Translates to: PEKWGSLQESYLAAKYKLWWPAR*TCPTAP Trigger: TGGGGCTGTGGGACAAGTTCAGCGAGCTGGCCACCA...CAGTTTATATTTAGCTGCCAAATAAGATTCCTGCAGGCTCCCCCATTTCTCTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR TCA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAAATGGTGGCGACCCTCTaGGTGCACCTGGGAAGGCGA | + |
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Preference number: 4 (lower is better) Translates to: GMNTGTPRNFGKITSSLKMVATL*VHLGRR Trigger: TCGCCTTCCCAGGTGCACTCAGAGGGTCGCCACCAT...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043172.15 |
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| CDS-3UTR CCA 90 bp | CCAGAGAAATGGGGGAGCCTGCAGGAATCTTATTTGGCAGCTAAATATAAACTGGAGAAGCCATCTCCTTaGGGAGGTCAGGCTGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: PEKWGSLQESYLAAKYKLEKPSP*GGQAGP Trigger: TGGGCCAGCCTGACCTCCCCAAGGAGATGGCTTCTC...CAGTTTATATTTAGCTGCCAAATAAGATTCCTGCAGGCTCCCCCATTTCTCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043172.15 |
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| CDS-3UTR CCA 90 bp | CTAGTGTTCCTGTTTGCTCCCAGAGGCCCAAGCACCTGGCAGAGGAAAAGGCTAATTGCATACAAAGCATaGCTTATAGACCCGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LVFLFAPRGPSTWQRKRLIAYKA*LIDPRR Trigger: CCTCCTCGGGTCTATAAGCCATGCTTTGTATGCAAT...TAGCCTTTTCCTCTGCCAGGTGCTTGGGCCTCTGGGAGCAAACAGGAACACTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS-3UTR CCA 90 bp | CTAGTGTTCCTGTTTGCTCCCAGAGGCCCAAGCACCTGGCAGAGGAAAAGGCTACATAGTGTCCTGCTCTaGGGTATACCTTGTACAGAT | + |
|
Preference number: 4 (lower is better) Translates to: LVFLFAPRGPSTWQRKRLHSVLL*GIPCTD Trigger: ATCTGTACAAGGTATACCCCAGAGCAGGACACTATG...TAGCCTTTTCCTCTGCCAGGTGCTTGGGCCTCTGGGAGCAAACAGGAACACTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CCA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAAGAGCTTCGTCCTCACTaGAAGCCTTGGGGTGGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: GMNTGTPRNFGKITSSLKELRPH*KPWGGG Trigger: GCCCCCACCCCAAGGCTTCCAGTGAGGACGAAGCTC...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CCA 90 bp | CCAGAGAAATGGGGGAGCCTGCAGGAATCTTATTTGGCAGCTAAATATAAACTGTTTGCCCTGGCCCCCTaGAGCTTCGTCCTCACTGGA | + |
|
Preference number: 4 (lower is better) Translates to: PEKWGSLQESYLAAKYKLFALAP*SFVLTG Trigger: TCCAGTGAGGACGAAGCTCCAGGGGGCCAGGGCAAA...CAGTTTATATTTAGCTGCCAAATAAGATTCCTGCAGGCTCCCCCATTTCTCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CCA 90 bp | CCAGAGAAATGGGGGAGCCTGCAGGAATCTTATTTGGCAGCTAAATATAAACTGAGCAGGAGCTGCCAGTaGCTCTGCGTAGTAAGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: PEKWGSLQESYLAAKYKLSRSCQ*LCVVSR Trigger: CCGGCTTACTACGCAGAGCCACTGGCAGCTCCTGCT...CAGTTTATATTTAGCTGCCAAATAAGATTCCTGCAGGCTCCCCCATTTCTCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063339.14 |
||
| CDS-3UTR GCA 90 bp | CCAGAGAAATGGGGGAGCCTGCAGGAATCTTATTTGGCAGCTAAATATAAACTGTCTCCTCCGAGCTGGTaGTCTGTGTCTCCACCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: PEKWGSLQESYLAAKYKLSPPSW*SVSPPR Trigger: TCTCGGTGGAGACACAGAGCACCAGCTCGGAGGAGA...CAGTTTATATTTAGCTGCCAAATAAGATTCCTGCAGGCTCCCCCATTTCTCTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043172.15 |
||
| CDS-3UTR CCA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAATGGGAAGCCTGCTCCTaGGTAACCAGATCCAGGCCC | + |
|
Preference number: 4 (lower is better) Translates to: GMNTGTPRNFGKITSSLKWEACS*VTRSRP Trigger: GGGCCTGGATCTGGTTACCCAGGAGCAGGCTTCCCA...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043172.15 |
||
| CDS-3UTR CCA 90 bp | CCAGAGAAATGGGGGAGCCTGCAGGAATCTTATTTGGCAGCTAAATATAAACTGACCTGGGAAGGCGAATaGGAAGCCTGCTCCTGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: PEKWGSLQESYLAAKYKLTWEGE*EACSWV Trigger: TACCCAGGAGCAGGCTTCCCATTCGCCTTCCCAGGT...CAGTTTATATTTAGCTGCCAAATAAGATTCCTGCAGGCTCCCCCATTTCTCTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043172.15 |
||
| CDS-3UTR CCA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAACCATCTCCTCCGAGCTaGTGCTCTGTGTCTCCACCG | + |
|
Preference number: 4 (lower is better) Translates to: GMNTGTPRNFGKITSSLKPSPPS*CSVSPP Trigger: CGGTGGAGACACAGAGCACCAGCTCGGAGGAGATGG...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CCA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAATTTGCCCTGGCCCCCTaGAGCTTCGTCCTCACTGGA | + |
|
Preference number: 4 (lower is better) Translates to: GMNTGTPRNFGKITSSLKFALAP*SFVLTG Trigger: TCCAGTGAGGACGAAGCTCCAGGGGGCCAGGGCAAA...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CCA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAATTGAGCAGCGTGATCTaGTCGGCAATGCTGAGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: GMNTGTPRNFGKITSSLKLSSVI*SAMLSP Trigger: AGGGCTCAGCATTGCCGACCAGATCACGCTGCTCAA...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CCA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAAGGAAAAGTCTCCTGGTaGGCTTTGCTGACCTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: GMNTGTPRNFGKITSSLKGKVSW*ALLTLV Trigger: CACCAAGGTCAGCAAAGCCCACCAGGAGACTTTTCC...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CCA 90 bp | CCAGAGAAATGGGGGAGCCTGCAGGAATCTTATTTGGCAGCTAAATATAAACTGATTGCATACAAAGCATaGCTTATAGACCCGAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: PEKWGSLQESYLAAKYKLIAYKA*LIDPRR Trigger: CCTCCTCGGGTCTATAAGCCATGCTTTGTATGCAAT...CAGTTTATATTTAGCTGCCAAATAAGATTCCTGCAGGCTCCCCCATTTCTCTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CCA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAATTTCATCAGCATCCTTaGGAACATGTAGGGTTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: GMNTGTPRNFGKITSSLKFHQHP*EHVGLA Trigger: AGCCAACCCTACATGTTCCCAAGGATGCTGATGAAA...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR GCA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAACAGAAGACTTGTCATTaGATACAAAGCATGGCTTAT | + |
|
Preference number: 4 (lower is better) Translates to: GMNTGTPRNFGKITSSLKQKTCH*IQSMAY Trigger: ATAAGCCATGCTTTGTATGCAATGACAAGTCTTCTG...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS GCA 90 bp | CAGGCTGTGCCCAGGCAAAAGACTCAAGTCCGGCGAAGCAGGAGCTaGCAGTGGCTCTGCGTAGTAAGCCGGCCCCGGGCCCGGCCGCCC | + |
|
Preference number: 5 (lower is better) Translates to: QAVPRQKTQVRRSRS*QWLCVVSRPRARPP Trigger: GGGCGGCCGGGCCCGGGGCCGGCTTACTACGCAGAGCCACTGGCAGCTCCTGCTTCGCCGGACTTGAGTCTTTTGCCTGGGCACAGCCTG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063339.14 |
||
| CDS GCA 90 bp | TGGTGGCGACCCTCTGAGTGCACCTGGGAAGGCGAATGGGAAGCCTaGTCCTGGGTAACCAGATCCAGGCCCCAGGGCACCGGGCGCAAA | + |
|
Preference number: 5 (lower is better) Translates to: WWRPSECTWEGEWEA*SWVTRSRPQGTGRK Trigger: TTTGCGCCCGGTGCCCTGGGGCCTGGATCTGGTTACCCAGGAGCAGGCTTCCCATTCGCCTTCCCAGGTGCACTCAGAGGGTCGCCACCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000135466.2 |
||
| CDS-3UTR CAA 90 bp | GGAGAGTGGGCGGGGCAGGTCCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGAGAGAAGCCATCTCCTaGGGGAGGTCAGGCTGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: GEWAGQVLPQSLAVSGKWREAIS*GRSGWP Trigger: GGGCCAGCCTGACCTCCCCAAGGAGATGGCTTCTCT...CCATTTCCCAGATACCGCCAGTGACTGGGGGAGGACCTGCCCCGCCCACTCTCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043172.15 |
||
| CDS-3UTR CAA 90 bp | AGAGTCAGGCGCTCAGGGTGGGGCACAAGGGTGGGCTCAGCCCTCCCTCGGGGGGTCTCCTGGTGGGCTTaGCTGACCTTGGTGATGAGT | + |
|
Preference number: 5 (lower is better) Translates to: RVRRSGWGTRVGSALPRGVSWWA*LTLVMS Trigger: ACTCATCACCAAGGTCAGCAAAGCCCACCAGGAGAC...CCCCCGAGGGAGGGCTGAGCCCACCCTTGTGCCCCACCCTGAGCGCCTGACTCT 66% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | CCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGTCAGTCTGCTGCCTGGGGCCGCCAGCTCGCTGAACTaGTCCCACAGCCCCAGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: PPPVTGGIWEMVSLLPGAASSLN*SHSPRS Trigger: GGACCTGGGGCTGTGGGACAAGTTCAGCGAGCTGGC...GGCCCCAGGCAGCAGACTGACCATTTCCCAGATACCGCCAGTGACTGGGGGAGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | GGAGAGTGGGCGGGGCAGGTCCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGAGGGGCTCCTGCAGCTaGTCCACCTTCTCGGGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: GEWAGQVLPQSLAVSGKWRGSCS*STFSGS Trigger: AGAGCCCGAGAAGGTGGACAAGCTGCAGGAGCCCCT...CCATTTCCCAGATACCGCCAGTGACTGGGGGAGGACCTGCCCCGCCCACTCTCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS CCA 90 bp | CGACCCTCTGAGTGCACCTGGGAAGGCGAATGGGAAGCCTGCTCCTaGGTAACCAGATCCAGGCCCCAGGGCACCGGGCGCAAAGAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: RPSECTWEGEWEACS*VTRSRPQGTGRKES Trigger: AGACTCTTTGCGCCCGGTGCCCTGGGGCCTGGATCTGGTTACCCAGGAGCAGGCTTCCCATTCGCCTTCCCAGGTGCACTCAGAGGGTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000135466.2 |
||
| CDS-3UTR CAA 90 bp | AGAGTCAGGCGCTCAGGGTGGGGCACAAGGGTGGGCTCAGCCCTCCCTCGGGGGTGGGCTTTGCTGACCTaGGTGATGAGTTCCTCTAAC | + |
|
Preference number: 5 (lower is better) Translates to: RVRRSGWGTRVGSALPRGWALLT*VMSSSN Trigger: GTTAGAGGAACTCATCACCAAGGTCAGCAAAGCCCA...CCCCCGAGGGAGGGCTGAGCCCACCCTTGTGCCCCACCCTGAGCGCCTGACTCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | TGGAGGGCCCAGGATGAGTGCTGTACTTCAGCAGAGGTACAGACGGGCTCGGGCAGGGGCTCCTGCAGCTaGTCCACCTTCTCGGGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: WRAQDECCTSAEVQTGSGRGSCS*STFSGS Trigger: AGAGCCCGAGAAGGTGGACAAGCTGCAGGAGCCCCT...GCCCGAGCCCGTCTGTACCTCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS GCA 90 bp | GTGGTGGGGGTGAGGGAGAGCTGGGTACCATCTCCTCCGAGCTGGTaGTCTGTGTCTCCACCGAGAGAGAAGCCATCTCCTTGGGGAGGT | + |
|
Preference number: 5 (lower is better) Translates to: VVGVRESWVPSPPSW*SVSPPREKPSPWGG Trigger: ACCTCCCCAAGGAGATGGCTTCTCTCTCGGTGGAGACACAGAGCACCAGCTCGGAGGAGATGGTACCCAGCTCTCCCTCACCCCCACCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000135466.2 |
||
| CDS CCA 90 bp | CATCTCAAATGGTGGCGACCCTCTGAGTGCACCTGGGAAGGCGAATaGGAAGCCTGCTCCTGGGTAACCAGATCCAGGCCCCAGGGCACC | + |
|
Preference number: 5 (lower is better) Translates to: HLKWWRPSECTWEGE*EACSWVTRSRPQGT Trigger: GGTGCCCTGGGGCCTGGATCTGGTTACCCAGGAGCAGGCTTCCCATTCGCCTTCCCAGGTGCACTCAGAGGGTCGCCACCATTTGAGATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000135466.2 |
||
| CDS-3UTR CAA 90 bp | AATGGAGGGCCCAGGATGAGTGCTGTACTTCAGCAGAGGTACAGACGGGCTCGGTGGGAACATGTAGGGTaGGCTGGGTCTCCGTCGCCG | + |
|
Preference number: 5 (lower is better) Translates to: NGGPRMSAVLQQRYRRARWEHVG*AGSPSP Trigger: CGGCGACGGAGACCCAGCCAACCCTACATGTTCCCA...CCGAGCCCGTCTGTACCTCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCATT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS GCA 90 bp | CCGGAAGCTAGGGCTCAGCATCTCAAATGGTGGCGACCCTCTGAGTaGACCTGGGAAGGCGAATGGGAAGCCTGCTCCTGGGTAACCAGA | + |
|
Preference number: 5 (lower is better) Translates to: PEARAQHLKWWRPSE*TWEGEWEACSWVTR Trigger: TCTGGTTACCCAGGAGCAGGCTTCCCATTCGCCTTCCCAGGTGCACTCAGAGGGTCGCCACCATTTGAGATGCTGAGCCCTAGCTTCCGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000135466.2 |
||
| CDS CCA 90 bp | GCTAGGGCTCAGCATCTCAAATGGTGGCGACCCTCTGAGTGCACCTaGGAAGGCGAATGGGAAGCCTGCTCCTGGGTAACCAGATCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: ARAQHLKWWRPSECT*EGEWEACSWVTRSR Trigger: CCTGGATCTGGTTACCCAGGAGCAGGCTTCCCATTCGCCTTCCCAGGTGCACTCAGAGGGTCGCCACCATTTGAGATGCTGAGCCCTAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000135466.2 |
||
| CDS-3UTR CAA 90 bp | CCAGTCACTGGCGGTATCTGGGAAATGGTCAGTCTGCTGCCTGGGGCCCAACCCGTCTCCTGGTGGGCTTaGCTGACCTTGGTGATGAGT | + |
|
Preference number: 5 (lower is better) Translates to: PVTGGIWEMVSLLPGAQPVSWWA*LTLVMS Trigger: ACTCATCACCAAGGTCAGCAAAGCCCACCAGGAGAC...GGGTTGGGCCCCAGGCAGCAGACTGACCATTTCCCAGATACCGCCAGTGACTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | ACACAGAGTCAGGCGCTCAGGGTGGGGCACAAGGGTGGGCTCAGCCCTCCCTCGTTTTCATCAGCATCCTaGGGAACATGTAGGGTTGGC | + |
|
Preference number: 5 (lower is better) Translates to: TQSQALRVGHKGGLSPPSFSSAS*GTCRVG Trigger: GCCAACCCTACATGTTCCCAAGGATGCTGATGAAAA...CGAGGGAGGGCTGAGCCCACCCTTGTGCCCCACCCTGAGCGCCTGACTCTGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | GGAGAGTGGGCGGGGCAGGTCCTCCCCCAGTCACTGGCGGTATCTGGGAAATGGTTCCTTACAGCTTCCTaGGACATGCCCACTTCGAAA | + |
|
Preference number: 5 (lower is better) Translates to: GEWAGQVLPQSLAVSGKWFLTAS*DMPTSK Trigger: TTTCGAAGTGGGCATGTCCAAGGAAGCTGTAAGGAA...CCATTTCCCAGATACCGCCAGTGACTGGGGGAGGACCTGCCCCGCCCACTCTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | TGGAGGGCCCAGGATGAGTGCTGTACTTCAGCAGAGGTACAGACGGGCTCGGGCTGGGCTTTGCTGACCTaGGTGATGAGTTCCTCTAAC | + |
|
Preference number: 5 (lower is better) Translates to: WRAQDECCTSAEVQTGSGWALLT*VMSSSN Trigger: GTTAGAGGAACTCATCACCAAGGTCAGCAAAGCCCA...GCCCGAGCCCGTCTGTACCTCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | CCAGTCACTGGCGGTATCTGGGAAATGGTCAGTCTGCTGCCTGGGGCCCAACCCATCTTGATGATGCATTaGGTGGCCAGCTCGCTGAAC | + |
|
Preference number: 5 (lower is better) Translates to: PVTGGIWEMVSLLPGAQPILMMH*VASSLN Trigger: GTTCAGCGAGCTGGCCACCAAATGCATCATCAAGAT...GGGTTGGGCCCCAGGCAGCAGACTGACCATTTCCCAGATACCGCCAGTGACTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | TGGAGGGCCCAGGATGAGTGCTGTACTTCAGCAGAGGTACAGACGGGCTCGGGCATCTTGATGATGCATTaGGTGGCCAGCTCGCTGAAC | + |
|
Preference number: 5 (lower is better) Translates to: WRAQDECCTSAEVQTGSGILMMH*VASSLN Trigger: GTTCAGCGAGCTGGCCACCAAATGCATCATCAAGAT...GCCCGAGCCCGTCTGTACCTCTGCTGAAGTACAGCACTCATCCTGGGCCCTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | CCAGTCACTGGCGGTATCTGGGAAATGGTCAGTCTGCTGCCTGGGGCCCAACCCTTCCTTACAGCTTCCTaGGACATGCCCACTTCGAAA | + |
|
Preference number: 5 (lower is better) Translates to: PVTGGIWEMVSLLPGAQPFLTAS*DMPTSK Trigger: TTTCGAAGTGGGCATGTCCAAGGAAGCTGTAAGGAA...GGGTTGGGCCCCAGGCAGCAGACTGACCATTTCCCAGATACCGCCAGTGACTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | CAGAGGAAAAGGCTATGGGAAGGCGGGGCTTCCTCTTGCGTCGGGAGCCTGTGGCGATTTCTGGTGACCTaGTTGATGATACAGTTTTTG | + |
|
Preference number: 5 (lower is better) Translates to: QRKRLWEGGASSCVGSLWRFLVT*LMIQFL Trigger: CAAAAACTGTATCATCAACAAGGTCACCAGAAATCG...CCACAGGCTCCCGACGCAAGAGGAAGCCCCGCCTTCCCATAGCCTTTTCCTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | CAGAGGAAAAGGCTATGGGAAGGCGGGGCTTCCTCTTGCGTCGGGAGCCTGTGGTTTCTGGTGACCTTGTaGATGATACAGTTTTTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: QRKRLWEGGASSCVGSLWFLVTL*MIQFLS Trigger: TGACAAAAACTGTATCATCAACAAGGTCACCAGAAA...CCACAGGCTCCCGACGCAAGAGGAAGCCCCGCCTTCCCATAGCCTTTTCCTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAAGCCAGCTCGCTGAACTaGTCCCACAGCCCCAGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: GMNTGTPRNFGKITSSLKASSLN*SHSPRS Trigger: GGACCTGGGGCTGTGGGACAAGTTCAGCGAGCTGGC...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAATGGGAACATGTAGGGTaGGCTGGGTCTCCGTCGCCG | + |
|
Preference number: 5 (lower is better) Translates to: GMNTGTPRNFGKITSSLKWEHVG*AGSPSP Trigger: CGGCGACGGAGACCCAGCCAACCCTACATGTTCCCA...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | GAGATTTTAGAGTCTAGACCCAGGCTCGCCCCTTCTCCAGCTCTTCTGGTAGGTTTTTCATCAGCATCCTaGGGAACATGTAGGGTTGGC | + |
|
Preference number: 5 (lower is better) Translates to: EILESRPRLAPSPALLVGFSSAS*GTCRVG Trigger: GCCAACCCTACATGTTCCCAAGGATGCTGATGAAAA...ACCTACCAGAAGAGCTGGAGAAGGGGCGAGCCTGGGTCTAGACTCTAAAATCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | GCCTGTGGCCTGAATCCGAAAGGCAGTGCTGAGATTTTAGAGTCTAGACCCAGGCCAGAAGACTTGTCATaGCATACAAAGCATGGCTTA | + |
|
Preference number: 5 (lower is better) Translates to: ACGLNPKGSAEILESRPRPEDLS*HTKHGL Trigger: TAAGCCATGCTTTGTATGCAATGACAAGTCTTCTGG...CCTGGGTCTAGACTCTAAAATCTCAGCACTGCCTTTCGGATTCAGGCCACAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | GCCTGTGGCCTGAATCCGAAAGGCAGTGCTGAGATTTTAGAGTCTAGACCCAGGCGATTTCTGGTGACCTaGTTGATGATACAGTTTTTG | + |
|
Preference number: 5 (lower is better) Translates to: ACGLNPKGSAEILESRPRRFLVT*LMIQFL Trigger: CAAAAACTGTATCATCAACAAGGTCACCAGAAATCG...CCTGGGTCTAGACTCTAAAATCTCAGCACTGCCTTTCGGATTCAGGCCACAGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAACCAGAAGACTTGTCATaGCATACAAAGCATGGCTTA | + |
|
Preference number: 5 (lower is better) Translates to: GMNTGTPRNFGKITSSLKPEDLS*HTKHGL Trigger: TAAGCCATGCTTTGTATGCAATGACAAGTCTTCTGG...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
||
| CDS-3UTR CAA 90 bp | GGGATGAACACAGGCACCCCTAGAAACTTTGGCAAAATAACGAGCTCATTAAAATTTCTGGTGACCTTGTaGATGATACAGTTTTTGTCA | + |
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Preference number: 5 (lower is better) Translates to: GMNTGTPRNFGKITSSLKFLVTL*MIQFLS Trigger: TGACAAAAACTGTATCATCAACAAGGTCACCAGAAA...TTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS CCA 72 bp | CAAAAGACTCAAGTCCGGCGAAGCAGGAGCTGCCAGTaGCTCTGCGTAGTAAGCCGGCCCCGGGCCCGGCCG | + |
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Preference number: 6 (lower is better) Translates to: QKTQVRRSRSCQ*LCVVSRPRARP Trigger: CGGCCGGGCCCGGGGCCGGCTTACTACGCAGAGCCACTGGCAGCTCCTGCTTCGCCGGACTTGAGTCTTTTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063339.14 |
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| CDS GCA 72 bp | CCCAGGCAAAAGACTCAAGTCCGGCGAAGCAGGAGCTaGCAGTGGCTCTGCGTAGTAAGCCGGCCCCGGGCC | + |
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Preference number: 6 (lower is better) Translates to: PRQKTQVRRSRS*QWLCVVSRPRA Trigger: GGCCCGGGGCCGGCTTACTACGCAGAGCCACTGGCAGCTCCTGCTTCGCCGGACTTGAGTCTTTTGCCTGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063339.14 |
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| CDS GCA 72 bp | CCCTCTGAGTGCACCTGGGAAGGCGAATGGGAAGCCTaGTCCTGGGTAACCAGATCCAGGCCCCAGGGCACC | + |
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Preference number: 6 (lower is better) Translates to: PSECTWEGEWEA*SWVTRSRPQGT Trigger: GGTGCCCTGGGGCCTGGATCTGGTTACCCAGGAGCAGGCTTCCCATTCGCCTTCCCAGGTGCACTCAGAGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000135466.2 |
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| CDS CCA 72 bp | TGGTGGCGACCCTCTGAGTGCACCTGGGAAGGCGAATaGGAAGCCTGCTCCTGGGTAACCAGATCCAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: WWRPSECTWEGE*EACSWVTRSRP Trigger: GGGCCTGGATCTGGTTACCCAGGAGCAGGCTTCCCATTCGCCTTCCCAGGTGCACTCAGAGGGTCGCCACCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000135466.2 |
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| CDS CAA 72 bp | GTGCTCTGTGTCTCCACCGAGAGAGAAGCCATCTCCTaGGGGAGGTCAGGCTGGCCCAGGCCCCGGAAGCTA | + |
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Preference number: 6 (lower is better) Translates to: VLCVSTEREAIS*GRSGWPRPRKL Trigger: TAGCTTCCGGGGCCTGGGCCAGCCTGACCTCCCCAAGGAGATGGCTTCTCTCTCGGTGGAGACACAGAGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000135466.2 |
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| CDS GCA 72 bp | GTGAGGGAGAGCTGGGTACCATCTCCTCCGAGCTGGTaGTCTGTGTCTCCACCGAGAGAGAAGCCATCTCCT | + |
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Preference number: 6 (lower is better) Translates to: VRESWVPSPPSW*SVSPPREKPSP Trigger: AGGAGATGGCTTCTCTCTCGGTGGAGACACAGAGCACCAGCTCGGAGGAGATGGTACCCAGCTCTCCCTCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000135466.2 |
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| CDS CCA 72 bp | TTTTCATCAGCATCCTTGGGAACATGTAGGGTTGGCTaGGTCTCCGTCGCCGGGCATAGAGCCTCAGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: FSSASLGTCRVG*VSVAGHRASGL Trigger: AAGCCCTGAGGCTCTATGCCCGGCGACGGAGACCCAGCCAACCCTACATGTTCCCAAGGATGCTGATGAAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 |
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| CDS CAA 72 bp | AGTGAGGGAAAAGTCTCCTGGTGGGCTTTGCTGACCTaGGTGATGAGTTCCTCTAACTGTGGACTCAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: SEGKVSWWALLT*VMSSSNCGLSS Trigger: TGAACTGAGTCCACAGTTAGAGGAACTCATCACCAAGGTCAGCAAAGCCCACCAGGAGACTTTTCCCTCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043172.15 ENSMUST00000063339.14 ENSMUST00000135466.2 |
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