RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RAPGEF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062232

Ensembl transcript IDs: ENSMUST00000118100.8, ENSMUST00000118340.7, ENSMUST00000195708.2

Found 689 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GATGCTTCTGGGATAGGGCACTTCACGGGCAAGGCCAGAAGGACATaGGAAGACAGGGTCACTGCCCAGGTCTTCCCTTGGTGCGGCCAA +
Preference number: 1 (lower is better)
Translates to: DASGIGHFTGKARRT*EDRVTAQVFPWCGQ
Trigger: TTGGCCGCACCAAGGGAAGACCTGGGCAGTGACCCTGTCTTCCCATGTCCTTCTGGCCTTGCCCGTGAAGTGCCCTATCCCAGAAGCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CCA 90 bp GGAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTaGTCCACCATCCTCAGATGTGCGTGCCAAGGCTCCAAGGCTTGG +
Preference number: 1 (lower is better)
Translates to: GEEAPCCFKAGKEAN*STILRCACQGSKAW
Trigger: CCAAGCCTTGGAGCCTTGGCACGCACATCTGAGGATGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR GCA 90 bp AAGGCAGGGAAGGAGGCAAACTGGTCCACCATCCTCAGATGTGCGTaGCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTG +
Preference number: 1 (lower is better)
Translates to: KAGKEANWSTILRCA*QGSKAWDVFLCSPL
Trigger: CAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGAGGATGGTGGACCAGTTTGCCTCCTTCCCTGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CCA 90 bp AACTGGTCCACCATCCTCAGATGTGCGTGCCAAGGCTCCAAGGCTTaGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATC +
Preference number: 1 (lower is better)
Translates to: NWSTILRCACQGSKA*DVFLCSPLGGSLWI
Trigger: GATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGAGGATGGTGGACCAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR GCA 90 bp AGAAGGACATGGGAAGACAGGGTCACTGCCCAGGTCTTCCCTTGGTaGGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAG +
Preference number: 1 (lower is better)
Translates to: RRTWEDRVTAQVFPW*GQTLSGIFGFSETQ
Trigger: CTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAGGGAAGACCTGGGCAGTGACCCTGTCTTCCCATGTCCTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CCA 90 bp CCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTTCCCTCCCCTaGCCATGTGCAAACTGTTTTACATTAGAGCCTCACCCACTGGGG +
Preference number: 1 (lower is better)
Translates to: PHKAQTGHTSPSSLP*PCANCFTLEPHPLG
Trigger: CCCCAGTGGGTGAGGCTCTAATGTAAAACAGTTTGCACATGGCCAGGGGAGGGAACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CCA 90 bp CCCACTGGGGAAGGGGCAGGTGAGGAGTCTTGGTATTTAAGTAATTaGCTAACGTTTGATGCTTCTGGGATAGGGCACTTCACGGGCAAG +
Preference number: 1 (lower is better)
Translates to: PTGEGAGEESWYLSN*LTFDASGIGHFTGK
Trigger: CTTGCCCGTGAAGTGCCCTATCCCAGAAGCATCAAACGTTAGCCAATTACTTAAATACCAAGACTCCTCACCTGCCCCTTCCCCAGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CCA 90 bp TGCCCAGGTCTTCCCTTGGTGCGGCCAAACCCTGTCCGGCATATTTaGTTTTTCAGAAACCCAGGCTGGCAATCCTACTTAAGGTTCAAA +
Preference number: 1 (lower is better)
Translates to: CPGLPLVRPNPVRHI*FFRNPGWQSYLRFK
Trigger: TTTGAACCTTAAGTAGGATTGCCAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAGGGAAGACCTGGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR GCA 90 bp CAGCAGCTCAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTaGAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGCAAAG +
Preference number: 1 (lower is better)
Translates to: QQLRGCWAVHFKQQV*KVPGQFLHSISHAK
Trigger: CTTTGCATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTGAGCTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CCA 90 bp ACTGGATTGAAATCTAAGAGGAAGATTGGAATCTCCTTCCAGGCATaGAGAAGGGCCGCCAGAGGGAATCGCCTTGTGACGATCTTGGAA +
Preference number: 1 (lower is better)
Translates to: TGLKSKRKIGISFQA*RRAARGNRLVTILE
Trigger: TTCCAAGATCGTCACAAGGCGATTCCCTCTGGCGGCCCTTCTCCATGCCTGGAAGGAGATTCCAATCTTCCTCTTAGATTTCAATCCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR GCA 90 bp TCAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTaGCAGGGCAATTTCTTCACAGTATTTCACATGCAAAGGGGAAAG +
Preference number: 1 (lower is better)
Translates to: SGAAGLCISSNKSAK*QGNFFTVFHMQRGK
Trigger: CTTTCCCCTTTGCATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CCA 90 bp TACATTAGAGCCTCACCCACTGGGGAAGGGGCAGGTGAGGAGTCTTaGTATTTAAGTAATTGGCTAACGTTTGATGCTTCTGGGATAGGG +
Preference number: 1 (lower is better)
Translates to: YIRASPTGEGAGEES*YLSNWLTFDASGIG
Trigger: CCCTATCCCAGAAGCATCAAACGTTAGCCAATTACTTAAATACCAAGACTCCTCACCTGCCCCTTCCCCAGTGGGTGAGGCTCTAATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR TCA 90 bp CTCCATATGCAGCGTCCCCAAAGCCACTTACAGGTCAGCCTTTGGTaGCTAACCATTTTGCAAAGGCTGGCGTATTTAACCATGTTTGTG +
Preference number: 1 (lower is better)
Translates to: LHMQRPQSHLQVSLW*LTILQRLAYLTMFV
Trigger: CACAAACATGGTTAAATACGCCAGCCTTTGCAAAATGGTTAGTCACCAAAGGCTGACCTGTAAGTGGCTTTGGGGACGCTGCATATGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 90 bp ATCCTCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTaGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAAGGAGCCTGGG +
Preference number: 2 (lower is better)
Translates to: ILRCACQGSKAWDVF*CSPLGGSLWIKEPG
Trigger: CCCAGGCTCCTTGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGAGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 90 bp CAGGCATGGAGAAGGGCCGCCAGAGGGAATCGCCTTGTGACGATCTaGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCA +
Preference number: 2 (lower is better)
Translates to: QAWRRAARGNRLVTI*EFGMILRDVAGSSS
Trigger: TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCACAAGGCGATTCCCTCTGGCGGCCCTTCTCCATGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGATCTCCTTCCAGGCATaGAGAAGGGCCGCCAGAGGG +
Preference number: 2 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLISFQA*RRAARG
Trigger: CCCTCTGGCGGCCCTTCTCCATGCCTGGAAGGAGAT...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 90 bp GGCCAGAAGGACATGGGAAGACAGGGTCACTGCCCAGGTCTTCCCTaGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAAC +
Preference number: 2 (lower is better)
Translates to: GQKDMGRQGHCPGLP*VRPNPVRHIWFFRN
Trigger: GTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAGGGAAGACCTGGGCAGTGACCCTGTCTTCCCATGTCCTTCTGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 90 bp GTCATTCTAGGGCTAGCAGCAGCTATGAGCAGACGGGCGCTACACTaGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACAGGTCA +
Preference number: 2 (lower is better)
Translates to: VILGLAAAMSRRALH*AFSICSVPKATYRS
Trigger: TGACCTGTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCTGCTCATAGCTGCTGCTAGCCCTAGAATGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCAGGGAAGGAGGCAAACTaGTCCACCATCCTCAGATGT +
Preference number: 2 (lower is better)
Translates to: QGLLGCAFQATSLQSARAGKEAN*STILRC
Trigger: ACATCTGAGGATGGTGGACCAGTTTGCCTCCTTCCC...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR TCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTGGAATGATACTGCGTaGCGTGGCAGGCAGCAGCTC +
Preference number: 2 (lower is better)
Translates to: VFVFLGGFETPGSSKASFWNDTA*RGRQQL
Trigger: GAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCA...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACCACCATCCTCAGATGTaGGTGCCAAGGCTCCAAGGC +
Preference number: 2 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNHHPQM*VPRLQG
Trigger: GCCTTGGAGCCTTGGCACGCACATCTGAGGATGGTG...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACTCTTGTGCTCTCCTTTaGGTGGCTCACTGTGGATCA +
Preference number: 2 (lower is better)
Translates to: RRALHLAFSICSVPKATYSCALL*VAHCGS
Trigger: TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGA...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGAGTCTTTGTCTTCCTTaGTGGGTTCGAGACCCCGGG +
Preference number: 2 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLSLCLP*WVRDPG
Trigger: CCCGGGGTCTCGAACCCACCAAGGAAGACAAAGACT...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGAGTCTTTGTCTTCCTTaGTGGGTTCGAGACCCCGGG +
Preference number: 2 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLSLCLP*WVRDPG
Trigger: CCCGGGGTCTCGAACCCACCAAGGAAGACAAAGACT...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR TCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGTGGAATGATACTGCGTaGCGTGGCAGGCAGCAGCTC +
Preference number: 2 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMWNDTA*RGRQQL
Trigger: GAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCA...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACACAGGTCTTCCCTTGGTaGGGCCAAACCCTGTCCGGC +
Preference number: 2 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTQVFPW*GQTLSG
Trigger: GCCGGACAGGGTTTGGCCGCACCAAGGGAAGACCTG...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGGTGCTCTCCTTTGGGTaGCTCACTGTGGATCAAGGA +
Preference number: 2 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLVLSFG*LTVDQG
Trigger: TCCTTGATCCACAGTGAGCCACCCAAAGGAGAGCAC...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGCAAGGCTCCAAGGCTTaGGACGTCTTCTTGTGCTCT +
Preference number: 2 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLQGSKA*DVFLCS
Trigger: AGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGGGGAAGGAGGCAAACTaGTCCACCATCCTCAGATGT +
Preference number: 2 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLGKEAN*STILRC
Trigger: ACATCTGAGGATGGTGGACCAGTTTGCCTCCTTCCC...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACCAGCTCAGGGGCTGCTaGGCTGTGCATTTCAAGCAA +
Preference number: 2 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNQLRGC*AVHFKQ
Trigger: TTGCTTGAAATGCACAGCCCAGCAGCCCCTGAGCTG...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACAAGGCCAGAAGGACATaGGAAGACAGGGTCACTGCC +
Preference number: 2 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNKARRT*EDRVTA
Trigger: GGCAGTGACCCTGTCTTCCCATGTCCTTCTGGCCTT...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 90 bp CTGCCCAGGTCTTCCCTTGGTGCGGCCAAACCCTGTCCGGCATATTaGGTTTTTCAGAAACCCAGGCTGGCAATCCTACTTAAGGTTCAA +
Preference number: 2 (lower is better)
Translates to: LPRSSLGAAKPCPAY*VFQKPRLAILLKVQ
Trigger: TTGAACCTTAAGTAGGATTGCCAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAGGGAAGACCTGGGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR TCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGTCTTGGAATTTGGAATaGTACTGCGTGACGTGGCAG +
Preference number: 2 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRSWNLE*YCVTWQ
Trigger: CTGCCACGTCACGCAGTATCATTCCAAATTCCAAGA...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCATGGGACGTCTTCTTGTaGTCTCCTTTGGGTGGCTCA +
Preference number: 2 (lower is better)
Translates to: VTILEFGMILRDVAGSSSWDVFL*SPLGGS
Trigger: TGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCA...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTGGAGAAGAAGCCCCATaGTGCTTTAAGGCAGGGAAG +
Preference number: 2 (lower is better)
Translates to: VFVFLGGFETPGSSKASFGEEAP*CFKAGK
Trigger: CTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTCC...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACGGGGCTGCTGGGCTGTaGATTTCAAGCAACAAGTCT +
Preference number: 2 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNGAAGL*ISSNKS
Trigger: AGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCC...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR TCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGCAGGTCAGCCTTTGGTaGCTAACCATTTTGCAAAGG +
Preference number: 2 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLQVSLW*LTILQR
Trigger: CCTTTGCAAAATGGTTAGTCACCAAAGGCTGACCTG...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGTGGGACGTCTTCTTGTaGTCTCCTTTGGGTGGCTCA +
Preference number: 2 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMWDVFL*SPLGGS
Trigger: TGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCA...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTCACCATCCTCAGATGTaGGTGCCAAGGCTCCAAGGC +
Preference number: 2 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSHHPQM*VPRLQG
Trigger: GCCTTGGAGCCTTGGCACGCACATCTGAGGATGGTG...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGTCTTGTGCTCTCCTTTaGGTGGCTCACTGTGGATCA +
Preference number: 2 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMSCALL*VAHCGS
Trigger: TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGA...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACACAGCTCAGGGGCTGCTaGGCTGTGCATTTCAAGCAA +
Preference number: 2 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTQLRGC*AVHFKQ
Trigger: TTGCTTGAAATGCACAGCCCAGCAGCCCCTGAGCTG...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAAGGCCAGAAGGACATaGGAAGACAGGGTCACTGCC +
Preference number: 2 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTKARRT*EDRVTA
Trigger: GGCAGTGACCCTGTCTTCCCATGTCCTTCTGGCCTT...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 90 bp TTAAAGACATACTCTCTGGTGCCAATCCAACAAGGGGAGGCTGTCTaGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACACCCCAA +
Preference number: 2 (lower is better)
Translates to: LKTYSLVPIQQGEAV*KEQYKQLAFAPTPQ
Trigger: TTGGGGTGTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGTTGGATTGGCACCAGAGAGTATGTCTTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR TCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGTCTTGGAATTTGGAATaGTACTGCGTGACGTGGCAG +
Preference number: 2 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMSWNLE*YCVTWQ
Trigger: CTGCCACGTCACGCAGTATCATTCCAAATTCCAAGA...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGAACAAGTCTGCAAAGTaGCAGGGCAATTTCTTCACA +
Preference number: 2 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLNKSAK*QGNFFT
Trigger: TGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTT...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGTTGGCCTTCTCCATATaGAGCGTCCCCAAAGCCACT +
Preference number: 2 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPLAFSI*SVPKAT
Trigger: AGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAA...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGGTGCTCTCCTTTGGGTaGCTCACTGTGGATCAAGGA +
Preference number: 2 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPVLSFG*LTVDQG
Trigger: TCCTTGATCCACAGTGAGCCACCCAAAGGAGAGCAC...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTCAGCTCAGGGGCTGCTaGGCTGTGCATTTCAAGCAA +
Preference number: 2 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSQLRGC*AVHFKQ
Trigger: TTGCTTGAAATGCACAGCCCAGCAGCCCCTGAGCTG...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 90 bp CCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACAGGTCAGCCTTaGGTGACTAACCATTTTGCAAAGGCTGGCGTATTTAACCATGTT +
Preference number: 2 (lower is better)
Translates to: PSPYAASPKPLTGQP*VTNHFAKAGVFNHV
Trigger: AACATGGTTAAATACGCCAGCCTTTGCAAAATGGTTAGTCACCAAAGGCTGACCTGTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACTTCAAGCAACAAGTCTaGAAAGTGCCAGGGCAATTT +
Preference number: 2 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNFKQQV*KVPGQF
Trigger: AAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGAA...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTCAAGGCTCCAAGGCTTaGGACGTCTTCTTGTGCTCT +
Preference number: 2 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSQGSKA*DVFLCS
Trigger: AGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 90 bp GACAAGCACTGTACTCAAAGGATTTCATATCAGTCTTTGTCTTCCTaGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTC +
Preference number: 2 (lower is better)
Translates to: DKHCTQRISYQSLSS*VGSRPRVVQRLAFL
Trigger: GAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGACTGATATGAAATCCTTTGAGTACAGTGCTTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR TCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACATCTTGGAATTTGGAATaGTACTGCGTGACGTGGCAG +
Preference number: 2 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTSWNLE*YCVTWQ
Trigger: CTGCCACGTCACGCAGTATCATTCCAAATTCCAAGA...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGCAAGGCTCCAAGGCTTaGGACGTCTTCTTGTGCTCT +
Preference number: 2 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMQGSKA*DVFLCS
Trigger: AGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGGGGAAGGAGGCAAACTaGTCCACCATCCTCAGATGT +
Preference number: 2 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMGKEAN*STILRC
Trigger: ACATCTGAGGATGGTGGACCAGTTTGCCTCCTTCCC...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGCCTGTCCGGCATATTTaGTTTTTCAGAAACCCAGGC +
Preference number: 2 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPPVRHI*FFRNPG
Trigger: GCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGG...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACGCAGGTGAGGAGTCTTaGTATTTAAGTAATTGGCTA +
Preference number: 2 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNAGEES*YLSNWL
Trigger: TAGCCAATTACTTAAATACCAAGACTCCTCACCTGC...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 90 bp AAACAAGTGGACAAGCACTGTACTCAAAGGATTTCATATCAGTCTTaGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTA +
Preference number: 2 (lower is better)
Translates to: KQVDKHCTQRISYQS*SSLVGSRPRVVQRL
Trigger: TAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGACTGATATGAAATCCTTTGAGTACAGTGCTTGTCCACTTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCAGGGGCTGCTGGGCTGTaGATTTCAAGCAACAAGTCT +
Preference number: 2 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAGAAGL*ISSNKS
Trigger: AGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCC...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCAGTGCTCTCCTTTGGGTaGCTCACTGTGGATCAAGGA +
Preference number: 2 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAVLSFG*LTVDQG
Trigger: TCCTTGATCCACAGTGAGCCACCCAAAGGAGAGCAC...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR TCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCAAAGGGGAGGCTGTCTTaGAAGAGCAGTACAAACAGC +
Preference number: 2 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAKGRLS*KSSTNS
Trigger: GCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTT...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAACAAGTCTGCAAAGTaGCAGGGCAATTTCTTCACA +
Preference number: 2 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTNKSAK*QGNFFT
Trigger: TGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTT...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATCCTGTCCGGCATATTTaGTTTTTCAGAAACCCAGGC +
Preference number: 2 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDPVRHI*FFRNPG
Trigger: GCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGG...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTTTCAAGCAACAAGTCTaGAAAGTGCCAGGGCAATTT +
Preference number: 2 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSFKQQV*KVPGQF
Trigger: AAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGAA...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATTTCAGAAACCCAGGCTaGCAATCCTACTTAAGGTTC +
Preference number: 2 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDFRNPG*QSYLRF
Trigger: GAACCTTAAGTAGGATTGCCAGCCTGGGTTTCTGAA...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAGCAGGTGAGGAGTCTTaGTATTTAAGTAATTGGCTA +
Preference number: 2 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTAGEES*YLSNWL
Trigger: TAGCCAATTACTTAAATACCAAGACTCCTCACCTGC...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR GCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATAACAAGTCTGCAAAGTaGCAGGGCAATTTCTTCACA +
Preference number: 2 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDNKSAK*QGNFFT
Trigger: TGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTT...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CCA 72 bp GGGATAGGGCACTTCACGGGCAAGGCCAGAAGGACATaGGAAGACAGGGTCACTGCCCAGGTCTTCCCTTGG +
Preference number: 3 (lower is better)
Translates to: GIGHFTGKARRT*EDRVTAQVFPW
Trigger: CCAAGGGAAGACCTGGGCAGTGACCCTGTCTTCCCATGTCCTTCTGGCCTTGCCCGTGAAGTGCCCTATCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CCA 72 bp GCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTaGTCCACCATCCTCAGATGTGCGTGCCAAGGCTCC +
Preference number: 3 (lower is better)
Translates to: APCCFKAGKEAN*STILRCACQGS
Trigger: GGAGCCTTGGCACGCACATCTGAGGATGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR GCA 72 bp GCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTaGTCTCCTTTGGGTGGCTCACTGTGGATCAAGGAG +
Preference number: 3 (lower is better)
Translates to: ACQGSKAWDVFL*SPLGGSLWIKE
Trigger: CTCCTTGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR GCA 72 bp AAGGAGGCAAACTGGTCCACCATCCTCAGATGTGCGTaGCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGC +
Preference number: 3 (lower is better)
Translates to: KEANWSTILRCA*QGSKAWDVFLC
Trigger: GCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGAGGATGGTGGACCAGTTTGCCTCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR GCA 72 bp AGGGAAGGAGGCAAACTGGTCCACCATCCTCAGATGTaGGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTT +
Preference number: 3 (lower is better)
Translates to: REGGKLVHHPQM*VPRLQGLGRLL
Trigger: AAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGAGGATGGTGGACCAGTTTGCCTCCTTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CCA 72 bp ACCATCCTCAGATGTGCGTGCCAAGGCTCCAAGGCTTaGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCA +
Preference number: 3 (lower is better)
Translates to: TILRCACQGSKA*DVFLCSPLGGS
Trigger: TGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGAGGATGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGGCTTGGGACGTCTTCTaGTGCTCTCCTTTGGGTGGC +
Preference number: 3 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLAWDVF*CSPLGG
Trigger: GCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGC...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR GCA 72 bp TGGGAAGACAGGGTCACTGCCCAGGTCTTCCCTTGGTaGGGCCAAACCCTGTCCGGCATATTTGGTTTTTCA +
Preference number: 3 (lower is better)
Translates to: WEDRVTAQVFPW*GQTLSGIFGFS
Trigger: TGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAGGGAAGACCTGGGCAGTGACCCTGTCTTCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCATTCTTGTGCTCTCCTTaGGGTGGCTCACTGTGGATC +
Preference number: 3 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPFLCSP*GGSLWI
Trigger: GATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAA...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGCCCTGTCCGGCATATTaGGTTTTTCAGAAACCCAGG +
Preference number: 3 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRPCPAY*VFQKPR
Trigger: CCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGG...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CCA 72 bp AAATCTAAGAGGAAGATTGGAATCTCCTTCCAGGCATaGAGAAGGGCCGCCAGAGGGAATCGCCTTGTGACG +
Preference number: 3 (lower is better)
Translates to: KSKRKIGISFQA*RRAARGNRLVT
Trigger: CGTCACAAGGCGATTCCCTCTGGCGGCCCTTCTCCATGCCTGGAAGGAGATTCCAATCTTCCTCTTAGATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGCAAGGGGAGGCTGTCTaGAAAGAGCAGTACAAACAG +
Preference number: 3 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLQGEAV*KEQYKQ
Trigger: CTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTG...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGCCAAGGCTCCAAGGCTaGGGACGTCTTCTTGTGCTC +
Preference number: 3 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPPRLQG*GRLLVL
Trigger: GAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGAGACGGGCGCTACACTaGGCCTTCTCCATATGCAGC +
Preference number: 3 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPRRALH*AFSICS
Trigger: GCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTCCAAGGCTCCAAGGCTaGGGACGTCTTCTTGTGCTC +
Preference number: 3 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSPRLQG*GRLLVL
Trigger: GAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGCGCCTTGTGACGATCTaGGAATTTGGAATGATACTG +
Preference number: 3 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLRLVTI*EFGMIL
Trigger: CAGTATCATTCCAAATTCCAAGATCGTCACAAGGCG...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR TCA 72 bp CAGCGTCCCCAAAGCCACTTACAGGTCAGCCTTTGGTaGCTAACCATTTTGCAAAGGCTGGCGTATTTAACC +
Preference number: 3 (lower is better)
Translates to: QRPQSHLQVSLW*LTILQRLAYLT
Trigger: GGTTAAATACGCCAGCCTTTGCAAAATGGTTAGTCACCAAAGGCTGACCTGTAAGTGGCTTTGGGGACGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGGCTTGGGACGTCTTCTaGTGCTCTCCTTTGGGTGGC +
Preference number: 3 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMAWDVF*CSPLGG
Trigger: GCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGC...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACCGCCTTGTGACGATCTaGGAATTTGGAATGATACTG +
Preference number: 3 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNRLVTI*EFGMIL
Trigger: CAGTATCATTCCAAATTCCAAGATCGTCACAAGGCG...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR GCA 72 bp AGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTaGAAAGTGCCAGGGCAATTTCTTCACAGTATTTCA +
Preference number: 3 (lower is better)
Translates to: RGCWAVHFKQQV*KVPGQFLHSIS
Trigger: TGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR GCA 72 bp GTACAAACAGCTGGCATTCGCTCCAACACCCCAAGCTaGCTCACTGCAATGCTATCCAGTTATAAATGTTTC +
Preference number: 3 (lower is better)
Translates to: VQTAGIRSNTPS*LTAMLSSYKCF
Trigger: GAAACATTTATAACTGGATAGCATTGCAGTGAGGCAGCTTGGGGTGTTGGAGCGAATGCCAGCTGTTTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CCA 72 bp GAAGGGGCAGGTGAGGAGTCTTGGTATTTAAGTAATTaGCTAACGTTTGATGCTTCTGGGATAGGGCACTTC +
Preference number: 3 (lower is better)
Translates to: EGAGEESWYLSN*LTFDASGIGHF
Trigger: GAAGTGCCCTATCCCAGAAGCATCAAACGTTAGCCAATTACTTAAATACCAAGACTCCTCACCTGCCCCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR GCA 72 bp GCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTaGCAGGGCAATTTCTTCACAGTATTTCACATGCAA +
Preference number: 3 (lower is better)
Translates to: AGLCISSNKSAK*QGNFFTVFHMQ
Trigger: TTGCATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGATTTCATATCAGTCTTaGTCTTCCTTGGTGGGTTCG +
Preference number: 3 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPISYQS*SSLVGS
Trigger: CGAACCCACCAAGGAAGACAAAGACTGATATGAAAT...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCACGCCTTGTGACGATCTaGGAATTTGGAATGATACTG +
Preference number: 3 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLARLVTI*EFGMIL
Trigger: CAGTATCATTCCAAATTCCAAGATCGTCACAAGGCG...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR-3UTR CAA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATAATCTAAGAGGAAGATaGGAATCTCCTTCCAGGCAT +
Preference number: 3 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDNLRGR*ESPSRH
Trigger: ATGCCTGGAAGGAGATTCCAATCTTCCTCTTAGATT...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGCCGGGGCCTCAGTaGGCCGTGCCACCATGCGGG +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTVPGPQ*AVPPCG
Trigger: CCCGCATGGTGGCACGGCCCACTGAGGCCCCGGCAC...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGGCTCCTGCGAAGCCCTaGGGCTGGAAGGGCGCGAGG +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLAPAKP*GWKGAR
Trigger: CCTCGCGCCCTTCCAGCCGCAGGGCTTCGCAGGAGC...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCAGCTCCTGCGAAGCCCTaGGGCTGGAAGGGCGCGAGG +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARAAPAKP*GWKGAR
Trigger: CCTCGCGCCCTTCCAGCCGCAGGGCTTCGCAGGAGC...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCAGGCCTCAGTGGGCCGTaGCACCATGCGGGACCGCTG +
Preference number: 4 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPGLSGP*HHAGPL
Trigger: CAGCGGTCCCGCATGGTGGCACGGCCCACTGAGGCC...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGGCCACTGTGGCTTGCTaGCCGGCCGGCTGGCTGCGG +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLATVAC*PAGWLR
Trigger: CCGCAGCCAGCCGGCCGGGCAGCAAGCCACAGTGGC...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCGCGAGGCGTGGGTCTaGGTCGCTGGGCTTGTGCCA +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLREAWV*VAGLVP
Trigger: TGGCACAAGCCCAGCGACGCAGACCCACGCCTCGCG...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCACTCCCCAGTAGCCCGTaGAAGACGCCCAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARALPSSP*KTPSWP
Trigger: GGGCCAGCTGGGCGTCTTCCACGGGCTACTGGGGAG...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTCGTAGCCTGGAGGTGTaGGAGGCGGCTCCCGGTACC +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTRSLEV*EAAPGT
Trigger: GGTACCGGGAGCCGCCTCCCACACCTCCAGGCTACG...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGTGGGCCGTGCCACCATaGGGGACCGCTGCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLWAVPP*GTAAGP
Trigger: TGGCCCTGCAGCGGTCCCGCATGGTGGCACGGCCCA...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCAGCCACTGTGGCTTGCTaGCCGGCCGGCTGGCTGCGG +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSATVAC*PAGWLR
Trigger: CCGCAGCCAGCCGGCCGGGCAGCAAGCCACAGTGGC...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACGCCACTGTGGCTTGCTaGCCGGCCGGCTGGCTGCGG +
Preference number: 4 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNATVAC*PAGWLR
Trigger: CCGCAGCCAGCCGGCCGGGCAGCAAGCCACAGTGGC...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCACGCGAGGCGTGGGTCTaGGTCGCTGGGCTTGTGCCA +
Preference number: 4 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPREAWV*VAGLVP
Trigger: TGGCACAAGCCCAGCGACGCAGACCCACGCCTCGCG...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTCTCCCCAGTAGCCCGTaGAAGACGCCCAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLLPSSP*KTPSWP
Trigger: GGGCCAGCTGGGCGTCTTCCACGGGCTACTGGGGAG...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTCGTAGCCTGGAGGTGTaGGAGGCGGCTCCCGGTACC +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLRSLEV*EAAPGT
Trigger: GGTACCGGGAGCCGCCTCCCACACCTCCAGGCTACG...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCATGGGCCGTGCCACCATaGGGGACCGCTGCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSWAVPP*GTAAGP
Trigger: TGGCCCTGCAGCGGTCCCGCATGGTGGCACGGCCCA...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 72 bp GGGCTAGCAGCAGCTATGAGCAGACGGGCGCTACACTaGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACT +
Preference number: 4 (lower is better)
Translates to: GLAAAMSRRALH*AFSICSVPKAT
Trigger: AGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCTGCTCATAGCTGCTGCTAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCAAGCCTCCCAGTAAGATaGAGGGCAGAGGGGCTTCCC +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARASLPVR*RAEGLP
Trigger: GGGAAGCCCCTCTGCCCTTCATCTTACTGGGAGGCT...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGTGCCAGCGGCTGCTaGGGCTGTACTTTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLCASGC*GCTFCW
Trigger: CCAGCAGAAAGTACAGCCTCAGCAGCCGCTGGCACA...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCATCCGCCGCTCCATCCTaGCCACACCTAGGTTGCTCT +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARASAAPS*PHLGCS
Trigger: AGAGCAACCTAGGTGTGGGCAGGATGGAGCGGCGGA...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTCACGGGCACCATGCTaGTGCTCTCTGCCTCAGCGG +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLSRAPC*CSLPQR
Trigger: CCGCTGAGGCAGAGAGCAGCAGCATGGTGCCCGTGA...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGGTCCTCCTCCGCTCCTaGGAAGCCCTGCGGCTGGAA +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLVLLRS*EALRLE
Trigger: TTCCAGCCGCAGGGCTTCGCAGGAGCGGAGGAGGAC...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCACACGTGGGTCACCTGTaGGTGCAGGCTGTCAGTGAG +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARAHVGHL*VQAVSE
Trigger: CTCACTGACAGCCTGCACCCACAGGTGACCCACGTG...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTTGGAAGACGCCCAGCTaGCCCGGGATTGGGCTTGTT +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTWKTPS*PGIGLV
Trigger: AACAAGCCCAATCCCGGGCCAGCTGGGCGTCTTCCA...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCATGCTCTCCACAATGCTaGCAGAATGCCTCTGGCGCC +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARACSPQC*QNASGA
Trigger: GGCGCCAGAGGCATTCTGTCAGCATTGTGGAGAGCA...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTTCTGCAGGGAGAGACTaGTTCTCCTGCTGGCCCAGA +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTSAGRD*FSCWPR
Trigger: TCTGGGCCAGCAGGAGAAGCAGTCTCTCCCTGCAGA...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118100.8
CDS-3UTR CCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCACACGTGGGTCACCTGTaGGTGCAGGCTGTCAGTGAG +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSHVGHL*VQAVSE
Trigger: CTCACTGACAGCCTGCACCCACAGGTGACCCACGTG...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCAGACAGGCAGGGCAGCTaGGATGTGCTTGGTCTGCCT +
Preference number: 4 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPDRQGS*DVLGLP
Trigger: AGGCAGACCAAGCACATCCCAGCTGCCCTGCCTGTC...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTTGCACGTGGAGCCACTaGGGAGGTCTCAGACTTGAC +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTCTWSH*GGLRLD
Trigger: GTCAAGTCTGAGACCTCCCCAGTGGCTCCACGTGCA...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGAAGACGCCCAGCTaGCCCGGGATTGGGCTTGTT +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLWKTPS*PGIGLV
Trigger: AACAAGCCCAATCCCGGGCCAGCTGGGCGTCTTCCA...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGGGCGTCACAGCTATGTaGGCAGGCATAGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLGVTAM*AGIGTG
Trigger: ACCTGTCCCTATGCCTGCCCACATAGCTGTGACGCC...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGGGCTTCCTGGCCGGGTaGCAAGGCCCTTCTGGGAAA +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLGFLAG*QGPSGK
Trigger: TTTCCCAGAAGGGCCTTGCCACCCGGCCAGGAAGCC...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGGGCTTCCTGGCCGGGTaGCAAGGCCCTTCTGGGAAA +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLGFLAG*QGPSGK
Trigger: TTTCCCAGAAGGGCCTTGCCACCCGGCCAGGAAGCC...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACAGTCTGCAGGGAGTTTaGAGGACCATGGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: RRALHLAFSICSVPKATYSLQGV*RTMAAG
Trigger: GCCTGCAGCCATGGTCCTCCAAACTCCCTGCAGACT...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118340.7
CDS-3UTR TCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTTCCCAGAGTCGCTGGTaGTGCTACATCCTGAATGGC +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTSQSRW*CYILNG
Trigger: GCCATTCAGGATGTAGCATCACCAGCGACTCTGGGA...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGAGCCTCCCAGTAAGATaGAGGGCAGAGGGGCTTCCC +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLSLPVR*RAEGLP
Trigger: GGGAAGCCCCTCTGCCCTTCATCTTACTGGGAGGCT...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGTGTGCCAGCGGCTGCTaGGGCTGTACTTTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLCASGC*GCTFCW
Trigger: CCAGCAGAAAGTACAGCCTCAGCAGCCGCTGGCACA...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCACCCTCACGATGTCCCTaGTCATCAGAGGGTCTGATG +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARAPSRCP*SSEGLM
Trigger: CATCAGACCCTCTGATGAGCAGGGACATCGTGAGGG...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAGGCCTCAGTGGGCCGTaGCACCATGCGGGACCGCTG +
Preference number: 4 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTGLSGP*HHAGPL
Trigger: CAGCGGTCCCGCATGGTGGCACGGCCCACTGAGGCC...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAGCTCCTGCGAAGCCCTaGGGCTGGAAGGGCGCGAGG +
Preference number: 4 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTAPAKP*GWKGAR
Trigger: CCTCGCGCCCTTCCAGCCGCAGGGCTTCGCAGGAGC...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCAGCTGGGATGTGCTTaGTCTGCCTCAGTCCTACGA +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLQLGCA*SASVLR
Trigger: TCGTAGGACTGAGGCAGACCAAGCACATCCCAGCTG...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCACAGCTGGGATGTGCTTaGTCTGCCTCAGTCCTACGA +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARAQLGCA*SASVLR
Trigger: TCGTAGGACTGAGGCAGACCAAGCACATCCCAGCTG...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCAACATCCAGCACTGTaGCGTTTGCACTGCCCTGAC +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLQHPAL*RLHCPD
Trigger: GTCAGGGCAGTGCAAACGCCACAGTGCTGGATGTTG...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTGGCTGTACTTTCTGCTaGGGCCCTGCACGTGGAGCC +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFGCTFC*GPARGA
Trigger: GGCTCCACGTGCAGGGCCCCAGCAGAAAGTACAGCC...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACGGCTGTACTTTCTGCTaGGGCCCTGCACGTGGAGCC +
Preference number: 4 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNGCTFC*GPARGA
Trigger: GGCTCCACGTGCAGGGCCCCAGCAGAAAGTACAGCC...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGGGCGTCACAGCTATGTaGGCAGGCATAGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRGVTAM*AGIGTG
Trigger: ACCTGTCCCTATGCCTGCCCACATAGCTGTGACGCC...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 72 bp GACATGGGAAGACAGGGTCACTGCCCAGGTCTTCCCTaGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTT +
Preference number: 4 (lower is better)
Translates to: DMGRQGHCPGLP*VRPNPVRHIWF
Trigger: AAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAGGGAAGACCTGGGCAGTGACCCTGTCTTCCCATGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACGCTCATCAGAGGGTCTaGTGCTCTCTCGATGTCTTC +
Preference number: 4 (lower is better)
Translates to: RRALHLAFSICSVPKATYAHQRV*CSLDVF
Trigger: GAAGACATCGAGAGAGCATCAGACCCTCTGATGAGC...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCATCTGCTTGCTTCCTGTaGCGCTCCAAACTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARASACFL*RSKLPS
Trigger: AGAAGGGAGTTTGGAGCGTCACAGGAAGCAAGCAGA...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCATATCCACGGTGCCACTaGGAGCCAGTGCATAACCTT +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARAYPRCH*EPVHNL
Trigger: AAGGTTATGCACTGGCTCTCAGTGGCACCGTGGATA...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTATCCACGGTGCCACTaGGAGCCAGTGCATAACCTT +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLYPRCH*EPVHNL
Trigger: AAGGTTATGCACTGGCTCTCAGTGGCACCGTGGATA...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGTGCTCTCCACAATGCTaGCAGAATGCCTCTGGCGCC +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLCSPQC*QNASGA
Trigger: GGCGCCAGAGGCATTCTGTCAGCATTGTGGAGAGCA...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACGACCCTAAGCTGTATTaGTCAGGCTCCATCAGGGTC +
Preference number: 4 (lower is better)
Translates to: RRALHLAFSICSVPKATYDPKLY*SGSIRV
Trigger: GACCCTGATGGAGCCTGATCAATACAGCTTAGGGTC...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGGGATGTGCTTGGTCTaGCTCAGTCCTACGATGCTA +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTGMCLV*LSPTML
Trigger: TAGCATCGTAGGACTGAGGCAGACCAAGCACATCCC...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCATCCGCCGCTCCATCCTaGCCACACCTAGGTTGCTCT +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSSAAPS*PHLGCS
Trigger: AGAGCAACCTAGGTGTGGGCAGGATGGAGCGGCGGA...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTACATCCTGAATGGCTaGAGGACACGTGGGTCACCT +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLYILNG*RTRGSP
Trigger: AGGTGACCCACGTGTCCTCCAGCCATTCAGGATGTA...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCTTCCACCAAATGCATaGTCAGCCTCTCTGAGGTGC +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLLPPNA*SASLRC
Trigger: GCACCTCAGAGAGGCTGACCATGCATTTGGTGGAAG...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCACAACATCCAGCACTGTaGCGTTTGCACTGCCCTGAC +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSQHPAL*RLHCPD
Trigger: GTCAGGGCAGTGCAAACGCCACAGTGCTGGATGTTG...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGTGCACGTGGAGCCACTaGGGAGGTCTCAGACTTGAC +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLCTWSH*GGLRLD
Trigger: GTCAAGTCTGAGACCTCCCCAGTGGCTCCACGTGCA...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGGGCTGTACTTTCTGCTaGGGCCCTGCACGTGGAGCC +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMGCTFC*GPARGA
Trigger: GGCTCCACGTGCAGGGCCCCAGCAGAAAGTACAGCC...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGCGTAGCCTGGAGGTGTaGGAGGCGGCTCCCGGTACC +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPRSLEV*EAAPGT
Trigger: GGTACCGGGAGCCGCCTCCCACACCTCCAGGCTACG...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACATGGCTGCAGGCAGTTaGCATAGCAACGCACAAGGA +
Preference number: 4 (lower is better)
Translates to: RRALHLAFSICSVPKATYMAAGS*HSNAQG
Trigger: TCCTTGTGCGTTGCTATGCCAACTGCCTGCAGCCAT...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118340.7
CDS-3UTR CCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGGAGTTTGGAGGACCATaGCTGCAGGCAGTTGGCATA +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLEFGGP*LQAVGI
Trigger: TATGCCAACTGCCTGCAGCCATGGTCCTCCAAACTC...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118340.7
3UTR CAA 72 bp AGAAGGGCCGCCAGAGGGAATCGCCTTGTGACGATCTaGGAATTTGGAATGATACTGCGTGACGTGGCAGGC +
Preference number: 4 (lower is better)
Translates to: RRAARGNRLVTI*EFGMILRDVAG
Trigger: GCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCACAAGGCGATTCCCTCTGGCGGCCCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGGCTCATCAGAGGGTCTaGTGCTCTCTCGATGTCTTC +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRAHQRV*CSLDVF
Trigger: GAAGACATCGAGAGAGCATCAGACCCTCTGATGAGC...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCACCTCCACGGAACCATTaGGAATCACTGACCAGGAAT +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARAPPRNH*ESLTRN
Trigger: ATTCCTGGTCAGTGATTCTCAATGGTTCCGTGGAGG...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGCATGGTCAGCCTCTCTaGGGTGCCCTTGATGACGAT +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLHGQPL*GALDDD
Trigger: ATCGTCATCAAGGGCACCTCAGAGAGGCTGACCATG...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGAGCCTCCCAGTAAGATaGAGGGCAGAGGGGCTTCCC +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMSLPVR*RAEGLP
Trigger: GGGAAGCCCCTCTGCCCTTCATCTTACTGGGAGGCT...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGCAACCTCCACGGTGCTaGGCTGAAGGAGGGAGATTT +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLQPPRC*AEGGRF
Trigger: AAATCTCCCTCCTTCAGCTCAGCACCGTGGAGGTTG...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCACAGGGAACAGGGGAATaGCAGGAGGCTGTAAGTTCT +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSQGTGE*QEAVSS
Trigger: AGAACTTACAGCCTCCTGTCATTCCCCTGTTCCCTG...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTCAGGGAACAGGGGAATaGCAGGAGGCTGTAAGTTCT +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLQGTGE*QEAVSS
Trigger: AGAACTTACAGCCTCCTGTCATTCCCCTGTTCCCTG...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACGCCATTCGGCCAACGTaGCGGATTTCTTTTGCAATC +
Preference number: 4 (lower is better)
Translates to: RRALHLAFSICSVPKATYAIRPT*RISFAI
Trigger: GATTGCAAAAGAAATCCGTCACGTTGGCCGAATGGC...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCCATTCGGCCAACGTaGCGGATTTCTTTTGCAATC +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTAIRPT*RISFAI
Trigger: GATTGCAAAAGAAATCCGTCACGTTGGCCGAATGGC...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGAGAGACTGCTTCTCCTaGTGGCCCAGAACTCCATGG +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLRDCFS*WPRTPW
Trigger: CCATGGAGTTCTGGGCCAGCAGGAGAAGCAGTCTCT...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118100.8
CDS-3UTR GCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTAAATGTCAGAAAGACTaGTGCTCCCAGAGTCGCTGG +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTKCQKD*CSQSRW
Trigger: CCAGCGACTCTGGGAGCAGCAGTCTTTCTGACATTT...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGACTCCAATAACTTCTTaGCCACTTCCATCGGGCTGG +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLTPITS*PLPSGW
Trigger: CCAGCCCGATGGAAGTGGGCAAGAAGTTATTGGAGT...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGGGGATGTGCTTGGTCTaGCTCAGTCCTACGATGCTA +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRGMCLV*LSPTML
Trigger: TAGCATCGTAGGACTGAGGCAGACCAAGCACATCCC...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACGATGACCACTTCCTTTaGGGTGGTGTCCTTGCTGAT +
Preference number: 4 (lower is better)
Translates to: RRALHLAFSICSVPKATYDDHFL*GGVLAD
Trigger: ATCAGCAAGGACACCACCGCAAAGGAAGTGGTCATC...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGCTGTGGCGTTTGCACTaGCCTGACTCAGGGACCCCA +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMLWRLH*PDSGTP
Trigger: TGGGGTCCCTGAGTCAGGGCAGTGCAAACGCCACAG...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACGCAAAGGCCGGCAGCTaGTGCATAAATTCCAGTAGT +
Preference number: 4 (lower is better)
Translates to: RRALHLAFSICSVPKATYAKAGS*CINSSS
Trigger: ACTACTGGAATTTATGCACCAGCTGCCGGCCTTTGC...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGCAGCTGGGATGTGCTTaGTCTGCCTCAGTCCTACGA +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLQLGCA*SASVLR
Trigger: TCGTAGGACTGAGGCAGACCAAGCACATCCCAGCTG...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCATCCTGTCGGCAAGCTTaGAAAGCTGATCTGGGAGTC +
Preference number: 4 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPSCRQA*KADLGV
Trigger: GACTCCCAGATCAGCTTTCCAAGCTTGCCGACAGGA...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACGTTCAAAGTTCCTCATaGAGAGCTGCGTGGCAACCT +
Preference number: 4 (lower is better)
Translates to: RRALHLAFSICSVPKATYVQSSS*RAAWQP
Trigger: AGGTTGCCACGCAGCTCTCCATGAGGAACTTTGAAC...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACTGCACGTGGAGCCACTaGGGAGGTCTCAGACTTGAC +
Preference number: 4 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNCTWSH*GGLRLD
Trigger: GTCAAGTCTGAGACCTCCCCAGTGGCTCCACGTGCA...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCACTGACAGAATGCCTCTaGCGCCGTTCATCATGCAGA +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSLTECL*RRSSCR
Trigger: TCTGCATGATGAACGGCGCCAGAGGCATTCTGTCAG...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGCTGACAGAATGCCTCTaGCGCCGTTCATCATGCAGA +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRLTECL*RRSSCR
Trigger: TCTGCATGATGAACGGCGCCAGAGGCATTCTGTCAG...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGCGGTCCCCTTGGTCATaGGAAAGCTCCTCTGTGCTA +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLRSPWS*ESSSVL
Trigger: TAGCACAGAGGAGCTTTCCCATGACCAAGGGGACCG...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGCGGTCCCCTTGGTCATaGGAAAGCTCCTCTGTGCTA +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLRSPWS*ESSSVL
Trigger: TAGCACAGAGGAGCTTTCCCATGACCAAGGGGACCG...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCAGTGAGTGTGCCCAAATaGCAGTGTTTCCCAGCTTCT +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARAVSVPK*QCFPAS
Trigger: AGAAGCTGGGAAACACTGCCATTTGGGCACACTCAC...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCAGTGCCGGGGCCTCAGTaGGCCGTGCCACCATGCGGG +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAVPGPQ*AVPPCG
Trigger: CCCGCATGGTGGCACGGCCCACTGAGGCCCCGGCAC...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGACCATTGAGAATCACTaGCCAGGAATCCAGCTCTTC +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLTIENH*PGIQLF
Trigger: GAAGAGCTGGATTCCTGGTCAGTGATTCTCAATGGT...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCATCTGAGGTAAGATGCTaGTCCGGGTCTTGTCGAGTA +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSSEVRC*SGSCRV
Trigger: TACTCGACAAGACCCGGATCAGCATCTTACCTCAGA...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCTGGGCATCTTCATCTaGGCAAAGCGTTTCTGTTTC +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLLGIFI*AKRFCF
Trigger: GAAACAGAAACGCTTTGCTCAGATGAAGATGCCCAG...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCAGTCCGTCTACTTTTaGGTCATTTCCCTCATGGAG +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLQSVYF*VISLME
Trigger: CTCCATGAGGGAAATGACTCAAAAGTAGACGGACTG...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGTCTGCTTGCTTCCTGTaGCGCTCCAAACTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLSACFL*RSKLPS
Trigger: AGAAGGGAGTTTGGAGCGTCACAGGAAGCAAGCAGA...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGGACCCTAAGCTGTATTaGTCAGGCTCCATCAGGGTC +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLDPKLY*SGSIRV
Trigger: GACCCTGATGGAGCCTGATCAATACAGCTTAGGGTC...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCACAGCTTCTCTGGTGCTaGATGGTCTGTATGTTGTCA +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARAQLLWC*MVCMLS
Trigger: TGACAACATACAGACCATTCAGCACCAGAGAAGCTG...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTACTTGCAGCATCCCCTaGATAGTCAAAGTGAGTGTG +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTTCSIP*IVKVSV
Trigger: CACACTCACTTTGACTATTCAGGGGATGCTGCAAGT...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAAAATGTCAGAAAGACTaGTGCTCCCAGAGTCGCTGG +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSKCQKD*CSQSRW
Trigger: CCAGCGACTCTGGGAGCAGCAGTCTTTCTGACATTT...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCACCCTCACGATGTCCCTaGTCATCAGAGGGTCTGATG +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSPSRCP*SSEGLM
Trigger: CATCAGACCCTCTGATGAGCAGGGACATCGTGAGGG...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAAGCTCTTTCCACCACTaGAAACACCATCACGGCACA +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSSSFHH*KHHHGT
Trigger: TGTGCCGTGATGGTGTTTGCAGTGGTGGAAAGAGCT...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGTGCTCTTCCACCAAATaGATGGTCAGCCTCTCTGAG +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRCSSTK*MVSLSE
Trigger: CTCAGAGAGGCTGACCATGCATTTGGTGGAAGAGCA...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTACTCCAATAACTTCTTaGCCACTTCCATCGGGCTGG +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLTPITS*PLPSGW
Trigger: CCAGCCCGATGGAAGTGGGCAAGAAGTTATTGGAGT...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTGATGACCACTTCCTTTaGGGTGGTGTCCTTGCTGAT +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLDDHFL*GGVLAD
Trigger: ATCAGCAAGGACACCACCGCAAAGGAAGTGGTCATC...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGGGCCACTCAGGACATTaGGGTACTTTGCCATGTTTC +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRGHSGH*GTLPCF
Trigger: GAAACATGGCAAAGTACCGCAATGTCCTGAGTGGCC...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACATCACGGGCACCATGCTaGTGCTCTCTGCCTCAGCGG +
Preference number: 4 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTSRAPC*CSLPQR
Trigger: CCGCTGAGGCAGAGAGCAGCAGCATGGTGCCCGTGA...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCAGGCCTCAGTGGGCCGTaGCACCATGCGGGACCGCTG +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAGLSGP*HHAGPL
Trigger: CAGCGGTCCCGCATGGTGGCACGGCCCACTGAGGCC...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGCGCGAGGCGTGGGTCTaGGTCGCTGGGCTTGTGCCA +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMREAWV*VAGLVP
Trigger: TGGCACAAGCCCAGCGACGCAGACCCACGCCTCGCG...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGTGGCTGGAGGACACGTaGGTCACCTGTGGGTGCAGG +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPWLEDT*VTCGCR
Trigger: CCTGCACCCACAGGTGACCCACGTGTCCTCCAGCCA...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAGCAAAGGCCGGCAGCTaGTGCATAAATTCCAGTAGT +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSAKAGS*CINSSS
Trigger: ACTACTGGAATTTATGCACCAGCTGCCGGCCTTTGC...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGCTTCCACCAAATGCATaGTCAGCCTCTCTGAGGTGC +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLLPPNA*SASLRC
Trigger: GCACCTCAGAGAGGCTGACCATGCATTTGGTGGAAG...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTCAAGCCTGCTTCAGTaGCTTTGCTACACGAGTCAA +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLSSLLQ*LCYTSQ
Trigger: TTGACTCGTGTAGCAAAGCCACTGAAGCAGGCTTGA...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACTCAAGCCTGCTTCAGTaGCTTTGCTACACGAGTCAA +
Preference number: 4 (lower is better)
Translates to: RRALHLAFSICSVPKATYSSLLQ*LCYTSQ
Trigger: TTGACTCGTGTAGCAAAGCCACTGAAGCAGGCTTGA...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAAACTCTCTGATGGCCTaGATGACCACTTCCTTTGCG +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSNSLMA*MTTSFA
Trigger: CGCAAAGGAAGTGGTCATCCAGGCCATCAGAGAGTT...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGTCTCGCAGCAGCTCCTaGGCATCTTCATCTGAGCAA +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLSRSSS*ASSSEQ
Trigger: TTGCTCAGATGAAGATGCCCAGGAGCTGCTGCGAGA...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGGAAGCTTTTCCCAGGTaGTTCGTAGTCTTGCCACCG +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLEAFPR*FVVLPP
Trigger: CGGTGGCAAGACTACGAACCACCTGGGAAAAGCTTC...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTCTCCAGCTCCAGGTTaGACAGGTATTGCTTCACTT +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLSPAPG*TGIASL
Trigger: AAGTGAAGCAATACCTGTCCAACCTGGAGCTGGAGA...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTTCTCCAGCTCCAGGTTaGACAGGTATTGCTTCACTT +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTSPAPG*TGIASL
Trigger: AAGTGAAGCAATACCTGTCCAACCTGGAGCTGGAGA...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGTCTCCAGGATTCTTaGGCAATGTGCTGGTTGCTG +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLCLQDS*AMCWLL
Trigger: CAGCAACCAGCACATTGCCCAAGAATCCTGGAGACA...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTGTGGCAAGGCCCTTCTaGGAAATCGGCAATGGGGAT +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFVARPF*EIGNGD
Trigger: ATCCCCATTGCCGATTTCCCAGAAGGGCCTTGCCAC...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCAGTGGCAAGGCCCTTCTaGGAAATCGGCAATGGGGAT +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSVARPF*EIGNGD
Trigger: ATCCCCATTGCCGATTTCCCAGAAGGGCCTTGCCAC...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGTCCCAGAGTCGCTGGTaGTGCTACATCCTGAATGGC +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMSQSRW*CYILNG
Trigger: GCCATTCAGGATGTAGCATCACCAGCGACTCTGGGA...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACCTTTGCTTTTCTTGTTaGCCTTCTCGAGGCCTATCA +
Preference number: 4 (lower is better)
Translates to: RRALHLAFSICSVPKATYLCFSC*PSRGLS
Trigger: TGATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAG...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCACTGGGCATCTTCATCTaGGCAAAGCGTTTCTGTTTC +
Preference number: 4 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPLGIFI*AKRFCF
Trigger: GAAACAGAAACGCTTTGCTCAGATGAAGATGCCCAG...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGCAACCTCCACGGTGCTaGGCTGAAGGAGGGAGATTT +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMQPPRC*AEGGRF
Trigger: AAATCTCCCTCCTTCAGCTCAGCACCGTGGAGGTTG...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTTCAGCTTCTCAAAGTTaGCCAGTCCGTCTACTTTTG +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTSASQS*PVRLLL
Trigger: CAAAAGTAGACGGACTGGTCAACTTTGAGAAGCTGA...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAACAGCTTTTTGGCATTaGGGAAGGAACTACGGCGTA +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSTAFWH*GRNYGV
Trigger: TACGCCGTAGTTCCTTCCTCAATGCCAAAAAGCTGT...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGTGTGCCAGCGGCTGCTaGGGCTGTACTTTCTGCTGG +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPCASGC*GCTFCW
Trigger: CCAGCAGAAAGTACAGCCTCAGCAGCCGCTGGCACA...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTGCTTGCTTCCTGTaGCGCTCCAAACTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFSACFL*RSKLPS
Trigger: AGAAGGGAGTTTGGAGCGTCACAGGAAGCAAGCAGA...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCGATCAAGTTCTCGGTaGTCCTTCACCATTACAATC +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLRSSSR*SFTITI
Trigger: GATTGTAATGGTGAAGGAGCACCGAGAACTTGATCG...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGGGATCCACTACAGAATaGTCTTCCACCAAATGCATG +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLGSTTE*SSTKCM
Trigger: CATGCATTTGGTGGAAGAGCATTCTGTAGTGGATCC...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCAGCCTCAGTCCTACGATaGTATCATCTTGAGACTGAC +
Preference number: 4 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPASVLR*YHLETD
Trigger: GTCAGTCTCAAGATGATAGCATCGTAGGACTGAGGC...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGGCCTCAGTCCTACGATaGTATCATCTTGAGACTGAC +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRASVLR*YHLETD
Trigger: GTCAGTCTCAAGATGATAGCATCGTAGGACTGAGGC...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACGGGATGTGCTTGGTCTaGCTCAGTCCTACGATGCTA +
Preference number: 4 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNGMCLV*LSPTML
Trigger: TAGCATCGTAGGACTGAGGCAGACCAAGCACATCCC...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTGGATCAAACAGGTCTTaGAGGTCCTGGAACAGCTTT +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLGSNRS*RSWNSF
Trigger: AAAGCTGTTCCAGGACCTGCAAGACCTGTTTGATCC...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGACATTGCGGTACTTTaGCATGTTTCTGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTDIAVL*HVSGRI
Trigger: GATCCTTCCAGAAACATGGCAAAGTACCGCAATGTC...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACGACATTGCGGTACTTTaGCATGTTTCTGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: RRALHLAFSICSVPKATYDIAVL*HVSGRI
Trigger: GATCCTTCCAGAAACATGGCAAAGTACCGCAATGTC...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGCTGTGGCGTTTGCACTaGCCTGACTCAGGGACCCCA +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPLWRLH*PDSGTP
Trigger: TGGGGTCCCTGAGTCAGGGCAGTGCAAACGCCACAG...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTTCACGGGCACCATGCTaGTGCTCTCTGCCTCAGCGG +
Preference number: 4 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSSRAPC*CSLPQR
Trigger: CCGCTGAGGCAGAGAGCAGCAGCATGGTGCCCGTGA...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATGTCCTCCTCCGCTCCTaGGAAGCCCTGCGGCTGGAA +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDVLLRS*EALRLE
Trigger: TTCCAGCCGCAGGGCTTCGCAGGAGCGGAGGAGGAC...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTACATCCTGAATGGCTaGAGGACACGTGGGTCACCT +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFYILNG*RTRGSP
Trigger: AGGTGACCCACGTGTCCTCCAGCCATTCAGGATGTA...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACTACATCCTGAATGGCTaGAGGACACGTGGGTCACCT +
Preference number: 4 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNYILNG*RTRGSP
Trigger: AGGTGACCCACGTGTCCTCCAGCCATTCAGGATGTA...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTCGTCGTTTAACACAATaGTTCCAGCTCTTTCCACCA +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTRRLTQ*FQLFPP
Trigger: TGGTGGAAAGAGCTGGAACCATTGTGTTAAACGACG...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTCTTTGTCCATGGTaGGCGAAACACCAAAGCTGT +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARAILCPW*AKHQSC
Trigger: ACAGCTTTGGTGTTTCGCCCACCATGGACAAAGAAT...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTTGTATTCTTTGTCCATaGTGGGCGAAACACCAAAGC +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTCILCP*WAKHQS
Trigger: GCTTTGGTGTTTCGCCCACCATGGACAAAGAATACA...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGGCAATGCAGACAAACTaGCAGTCATCCACCTTAGTC +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRAMQTN*QSSTLV
Trigger: GACTAAGGTGGATGACTGCCAGTTTGTCTGCATTGC...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACCCACTTCCATCGGGCTaGAAAGGAAAGTCCGGTATG +
Preference number: 4 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNPLPSG*KGKSGM
Trigger: CATACCGGACTTTCCTTTCCAGCCCGATGGAAGTGG...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTCCACTTCCATCGGGCTaGAAAGGAAAGTCCGGTATG +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFPLPSG*KGKSGM
Trigger: CATACCGGACTTTCCTTTCCAGCCCGATGGAAGTGG...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCACTTGGAAAGCTGATCTaGGAGTCGGCGTTGTTTGAT +
Preference number: 4 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPLGKLI*ESALFD
Trigger: ATCAAACAACGCCGACTCCCAGATCAGCTTTCCAAG...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCACTTGGAAAGCTGATCTaGGAGTCGGCGTTGTTTGAT +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSLGKLI*ESALFD
Trigger: ATCAAACAACGCCGACTCCCAGATCAGCTTTCCAAG...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCATCCTGTCGGCAAGCTTaGAAAGCTGATCTGGGAGTC +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSSCRQA*KADLGV
Trigger: GACTCCCAGATCAGCTTTCCAAGCTTGCCGACAGGA...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCATTCATCCTCTTCAGCTaGTTTGTTTCCCGCAGGATT +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARAFILFS*FVSRRI
Trigger: AATCCTGCGGGAAACAAACCAGCTGAAGAGGATGAA...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCAGAAGCTTTTCCCAGGTaGTTCGTAGTCTTGCCACCG +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSEAFPR*FVVLPP
Trigger: CGGTGGCAAGACTACGAACCACCTGGGAAAAGCTTC...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCATCTCCAGCTCCAGGTTaGACAGGTATTGCTTCACTT +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSSPAPG*TGIASL
Trigger: AAGTGAAGCAATACCTGTCCAACCTGGAGCTGGAGA...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTTCAGAAAACATCATTTaGTCCATATGGCCACCGGAG +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTSENII*SIWPPE
Trigger: CTCCGGTGGCCATATGGACCAAATGATGTTTTCTGA...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTCAGAAAACATCATTTaGTCCATATGGCCACCGGAG +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLSENII*SIWPPE
Trigger: CTCCGGTGGCCATATGGACCAAATGATGTTTTCTGA...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCACTCCCCAGTAGCCCGTaGAAGACGCCCAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLALPSSP*KTPSWP
Trigger: GGGCCAGCTGGGCGTCTTCCACGGGCTACTGGGGAG...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTGGCTTCCTGGCCGGGTaGCAAGGCCCTTCTGGGAAA +
Preference number: 4 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSGFLAG*QGPSGK
Trigger: TTTCCCAGAAGGGCCTTGCCACCCGGCCAGGAAGCC...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCATCTGAGGTAAGATGCTaGTCCGGGTCTTGTCGAGTA +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSSEVRC*SGSCRV
Trigger: TACTCGACAAGACCCGGATCAGCATCTTACCTCAGA...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGTCATTGTATGGTTTCTaGGGTAAGATGCTGATCCGG +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRSLYGF*GKMLIR
Trigger: CCGGATCAGCATCTTACCTCAGAAACCATACAATGA...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTTTGTTGGTCAGCCTTaGAAACTCTCAGTACCTGAT +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLFVGQP*KLSVPD
Trigger: ATCAGGTACTGAGAGTTTTCAAGGCTGACCAACAAA...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGCAGTCCGTCTACTTTTaGGTCATTTCCCTCATGGAG +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLQSVYF*VISLME
Trigger: CTCCATGAGGGAAATGACTCAAAAGTAGACGGACTG...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGTCAGCTTCTCAAAGTTaGCCAGTCCGTCTACTTTTG +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRSASQS*PVRLLL
Trigger: CAAAAGTAGACGGACTGGTCAACTTTGAGAAGCTGA...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCATGGTTCACACTGCAGTaGCAGTGTCTGAAGACTCTC +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSWFTLQ*QCLKTL
Trigger: GAGAGTCTTCAGACACTGTCACTGCAGTGTGAACCA...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACTGGTTCACACTGCAGTaGCAGTGTCTGAAGACTCTC +
Preference number: 4 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNWFTLQ*QCLKTL
Trigger: GAGAGTCTTCAGACACTGTCACTGCAGTGTGAACCA...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGCAGCTTCTCTGGTGCTaGATGGTCTGTATGTTGTCA +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLQLLWC*MVCMLS
Trigger: TGACAACATACAGACCATTCAGCACCAGAGAAGCTG...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGTGTCTGTGGGAGGCTTaGCGTTGGAAATATTCTTCA +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRCLWEA*RWKYSS
Trigger: TGAAGAATATTTCCAACGTCAAGCCTCCCACAGACA...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTAGCTCTTTCCACCACTaGAAACACCATCACGGCACA +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFSSFHH*KHHHGT
Trigger: TGTGCCGTGATGGTGTTTGCAGTGGTGGAAAGAGCT...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCAAGCTCTTTCCACCACTaGAAACACCATCACGGCACA +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSSSFHH*KHHHGT
Trigger: TGTGCCGTGATGGTGTTTGCAGTGGTGGAAAGAGCT...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTCGATCAAGTTCTCGGTaGTCCTTCACCATTACAATC +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLRSSSR*SFTITI
Trigger: GATTGTAATGGTGAAGGAGCACCGAGAACTTGATCG...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTACTCCAATAACTTCTTaGCCACTTCCATCGGGCTGG +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFTPITS*PLPSGW
Trigger: CCAGCCCGATGGAAGTGGGCAAGAAGTTATTGGAGT...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGGGATCAAACAGGTCTTaGAGGTCCTGGAACAGCTTT +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLGSNRS*RSWNSF
Trigger: AAAGCTGTTCCAGGACCTGCAAGACCTGTTTGATCC...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGGACATTGCGGTACTTTaGCATGTTTCTGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRDIAVL*HVSGRI
Trigger: GATCCTTCCAGAAACATGGCAAAGTACCGCAATGTC...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCACTTGTGGAGAGTTTATaGCAAAAGGAGGCAGATCCT +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSLVESL*QKEADP
Trigger: AGGATCTGCCTCCTTTTGGCATAAACTCTCCACAAG...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACACAATGCTGACAGAATaGCTCTGGCGCCGTTCATCA +
Preference number: 4 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNTMLTE*LWRRSS
Trigger: TGATGAACGGCGCCAGAGGCATTCTGTCAGCATTGT...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTTCCGCCGCTCCATCCTaGCCACACCTAGGTTGCTCT +
Preference number: 4 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSSAAPS*PHLGCS
Trigger: AGAGCAACCTAGGTGTGGGCAGGATGGAGCGGCGGA...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCAGTCCTCCTCCGCTCCTaGGAAGCCCTGCGGCTGGAA +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAVLLRS*EALRLE
Trigger: TTCCAGCCGCAGGGCTTCGCAGGAGCGGAGGAGGAC...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGTTCCTGCAGAACGCTTaGCAAAACTGCTCCTTGGAA +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLFLQNA*QNCSLE
Trigger: TTCCAAGGAGCAGTTTTGGCAAGCGTTCTGCAGGAA...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGGACTGCTTCTCCTGCTaGCCCAGAACTCCATGGTTA +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMDCFSC*PRTPWL
Trigger: TAACCATGGAGTTCTGGGCCAGCAGGAGAAGCAGTC...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118100.8
CDS-3UTR CCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGTGGCTGGAGGACACGTaGGTCACCTGTGGGTGCAGG +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMWLEDT*VTCGCR
Trigger: CCTGCACCCACAGGTGACCCACGTGTCCTCCAGCCA...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCACGTCGTTTAACACAATaGTTCCAGCTCTTTCCACCA +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSRRLTQ*FQLFPP
Trigger: TGGTGGAAAGAGCTGGAACCATTGTGTTAAACGACG...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGTATTCTTTGTCCATaGTGGGCGAAACACCAAAGC +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLCILCP*WAKHQS
Trigger: GCTTTGGTGTTTCGCCCACCATGGACAAAGAATACA...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCATGTATTCTTTGTCCATaGTGGGCGAAACACCAAAGC +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSCILCP*WAKHQS
Trigger: GCTTTGGTGTTTCGCCCACCATGGACAAAGAATACA...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGCCCTTGATGACGATGTaGCCCTTCCTTGTTCCAGTC +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMPLMTM*PFLVPV
Trigger: GACTGGAACAAGGAAGGGCCACATCGTCATCAAGGG...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCAAACTCTCTGATGGCCTaGATGACCACTTCCTTTGCG +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSNSLMA*MTTSFA
Trigger: CGCAAAGGAAGTGGTCATCCAGGCCATCAGAGAGTT...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACGTTCAAAGTTCCTCATaGAGAGCTGCGTGGCAACCT +
Preference number: 4 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNVQSSS*RAAWQP
Trigger: AGGTTGCCACGCAGCTCTCCATGAGGAACTTTGAAC...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGGTCTGTATGTTGTCATaGGAACCACTTGAGCATGAT +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLVCMLS*EPLEHD
Trigger: ATCATGCTCAAGTGGTTCCCATGACAACATACAGAC...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTCAGAAAACATCATTTaGTCCATATGGCCACCGGAG +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLSENII*SIWPPE
Trigger: CTCCGGTGGCCATATGGACCAAATGATGTTTTCTGA...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAGGCGTCACAGCTATGTaGGCAGGCATAGGGACAGGT +
Preference number: 4 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTGVTAM*AGIGTG
Trigger: ACCTGTCCCTATGCCTGCCCACATAGCTGTGACGCC...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 72 bp TACTCTCTGGTGCCAATCCAACAAGGGGAGGCTGTCTaGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCA +
Preference number: 4 (lower is better)
Translates to: YSLVPIQQGEAV*KEQYKQLAFAP
Trigger: TGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGTTGGATTGGCACCAGAGAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGCCTCCACGGAACCATTaGGAATCACTGACCAGGAAT +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMPPRNH*ESLTRN
Trigger: ATTCCTGGTCAGTGATTCTCAATGGTTCCGTGGAGG...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCAAGTTGGTTTTCACAGTaGTGGACAGGTGTGTGTTAT +
Preference number: 4 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPSWFSQ*WTGVCY
Trigger: ATAACACACACCTGTCCATCACTGTGAAAACCAACT...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTTGGTTTTCACAGTaGTGGACAGGTGTGTGTTAT +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRSWFSQ*WTGVCY
Trigger: ATAACACACACCTGTCCATCACTGTGAAAACCAACT...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGTCATTGTATGGTTTCTaGGGTAAGATGCTGATCCGG +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLSLYGF*GKMLIR
Trigger: CCGGATCAGCATCTTACCTCAGAAACCATACAATGA...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGTCAGCTTCTCAAAGTTaGCCAGTCCGTCTACTTTTG +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLSASQS*PVRLLL
Trigger: CAAAAGTAGACGGACTGGTCAACTTTGAGAAGCTGA...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGGCCATTCGGCCAACGTaGCGGATTTCTTTTGCAATC +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMAIRPT*RISFAI
Trigger: GATTGCAAAAGAAATCCGTCACGTTGGCCGAATGGC...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGTGGTTCACACTGCAGTaGCAGTGTCTGAAGACTCTC +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMWFTLQ*QCLKTL
Trigger: GAGAGTCTTCAGACACTGTCACTGCAGTGTGAACCA...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCAAAAGAAGAATTGCTaGCAATACTGGATCGTGAAG +
Preference number: 4 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLQKKNC*QYWIVK
Trigger: CTTCACGATCCAGTATTGTCAGCAATTCTTCTTTTG...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACACTTGCAGCATCCCCTaGATAGTCAAAGTGAGTGTG +
Preference number: 4 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNTCSIP*IVKVSV
Trigger: CACACTCACTTTGACTATTCAGGGGATGCTGCAAGT...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTGGATCAAACAGGTCTTaGAGGTCCTGGAACAGCTTT +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFGSNRS*RSWNSF
Trigger: AAAGCTGTTCCAGGACCTGCAAGACCTGTTTGATCC...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGGGCCACTCAGGACATTaGGGTACTTTGCCATGTTTC +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMGHSGH*GTLPCF
Trigger: GAAACATGGCAAAGTACCGCAATGTCCTGAGTGGCC...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGCTGTGGCGTTTGCACTaGCCTGACTCAGGGACCCCA +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMLWRLH*PDSGTP
Trigger: TGGGGTCCCTGAGTCAGGGCAGTGCAAACGCCACAG...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTGATTCTTGGGCAATGTaGTGGTTGCTGGTTCACACT +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFDSWAM*WLLVHT
Trigger: AGTGTGAACCAGCAACCAGCACATTGCCCAAGAATC...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGACAATGCTGACAGAATaGCTCTGGCGCCGTTCATCA +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMTMLTE*LWRRSS
Trigger: TGATGAACGGCGCCAGAGGCATTCTGTCAGCATTGT...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTCAGTTTTGTGAAGTCTaGAGGGAGCTGAGATTTAGT +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLQFCEV*RELRFS
Trigger: ACTAAATCTCAGCTCCCTGCAGACTTCACAAAACTG...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGGCAAAGGCCGGCAGCTaGTGCATAAATTCCAGTAGT +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMAKAGS*CINSSS
Trigger: ACTACTGGAATTTATGCACCAGCTGCCGGCCTTTGC...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGCGTCGTTTAACACAATaGTTCCAGCTCTTTCCACCA +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLRRLTQ*FQLFPP
Trigger: TGGTGGAAAGAGCTGGAACCATTGTGTTAAACGACG...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTGCAATGCAGACAAACTaGCAGTCATCCACCTTAGTC +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFAMQTN*QSSTLV
Trigger: GACTAAGGTGGATGACTGCCAGTTTGTCTGCATTGC...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCAAGCCTGCTTCAGTaGCTTTGCTACACGAGTCAA +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFSSLLQ*LCYTSQ
Trigger: TTGACTCGTGTAGCAAAGCCACTGAAGCAGGCTTGA...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGGACAGGCAGGGCAGCTaGGATGTGCTTGGTCTGCCT +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMDRQGS*DVLGLP
Trigger: AGGCAGACCAAGCACATCCCAGCTGCCCTGCCTGTC...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATGACAGGCAGGGCAGCTaGGATGTGCTTGGTCTGCCT +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDDRQGS*DVLGLP
Trigger: AGGCAGACCAAGCACATCCCAGCTGCCCTGCCTGTC...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGTTCATCCTCTTCAGCTaGTTTGTTTCCCGCAGGATT +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLFILFS*FVSRRI
Trigger: AATCCTGCGGGAAACAAACCAGCTGAAGAGGATGAA...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACACAACATCCAGCACTGTaGCGTTTGCACTGCCCTGAC +
Preference number: 4 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTQHPAL*RLHCPD
Trigger: GTCAGGGCAGTGCAAACGCCACAGTGCTGGATGTTG...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGACTTTCCGAGCCATCTaGGCATCTTCATACAGCTTT +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLTFRAI*ASSYSF
Trigger: AAAGCTGTATGAAGATGCCCAGATGGCTCGGAAAGT...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGATCATGCAGAGAGACTaGCACCGAGTCAAAAGAAGA +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLIMQRD*HRVKRR
Trigger: TCTTCTTTTGACTCGGTGCCAGTCTCTCTGCATGAT...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGTTCTCTGGTGCTGAATaGTCTGTATGTTGTCATGGG +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLFSGAE*SVCCHG
Trigger: CCCATGACAACATACAGACCATTCAGCACCAGAGAA...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGTGGAAGACGCCCAGCTaGCCCGGGATTGGGCTTGTT +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMWKTPS*PGIGLV
Trigger: AACAAGCCCAATCCCGGGCCAGCTGGGCGTCTTCCA...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAGTGGCAAGGCCCTTCTaGGAAATCGGCAATGGGGAT +
Preference number: 4 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTVARPF*EIGNGD
Trigger: ATCCCCATTGCCGATTTCCCAGAAGGGCCTTGCCAC...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCAACTATTTCCAGGTCCTaGGGGGTCCTCTCGGCGGGG +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLATISRS*GVLSAG
Trigger: CCCCGCCGAGAGGACCCCCCAGGACCTGGAAATAGT...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCATCATTGTATGGTTTCTaGGGTAAGATGCTGATCCGG +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSSLYGF*GKMLIR
Trigger: CCGGATCAGCATCTTACCTCAGAAACCATACAATGA...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTAGGGTCCATGTTGACTaGTGCCATTCGGCCAACGTG +
Preference number: 4 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSRVHVD*CHSANV
Trigger: CACGTTGGCCGAATGGCATCAGTCAACATGGACCCT...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGTATCCACGGTGCCACTaGGAGCCAGTGCATAACCTT +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPYPRCH*EPVHNL
Trigger: AAGGTTATGCACTGGCTCTCAGTGGCACCGTGGATA...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACGAAGAAATCTCACTGTaGCCTGAATCTGAGAAATTA +
Preference number: 4 (lower is better)
Translates to: RRALHLAFSICSVPKATYEEISL*PESEKL
Trigger: TAATTTCTCAGATTCAGGTCACAGTGAGATTTCTTC...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCAGACAATACTGGATCGTaGAGAAATCTCACTGTGACC +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSDNTGS*RNLTVT
Trigger: GGTCACAGTGAGATTTCTTCACGATCCAGTATTGTC...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGTGCTCTCCACAATGCTaGCAGAATGCCTCTGGCGCC +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMCSPQC*QNASGA
Trigger: GGCGCCAGAGGCATTCTGTCAGCATTGTGGAGAGCA...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGGACCCTAAGCTGTATTaGTCAGGCTCCATCAGGGTC +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPDPKLY*SGSIRV
Trigger: GACCCTGATGGAGCCTGATCAATACAGCTTAGGGTC...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGCAGCTTCTCTGGTGCTaGATGGTCTGTATGTTGTCA +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMQLLWC*MVCMLS
Trigger: TGACAACATACAGACCATTCAGCACCAGAGAAGCTG...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCAGGATCCACTACAGAATaGTCTTCCACCAAATGCATG +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSGSTTE*SSTKCM
Trigger: CATGCATTTGGTGGAAGAGCATTCTGTAGTGGATCC...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGGTGACGGATTTCTTTTaGAATCATCCTCAGCTTCTC +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLVTDFF*NHPQLL
Trigger: GAGAAGCTGAGGATGATTGCAAAAGAAATCCGTCAC...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGGTGACGGATTTCTTTTaGAATCATCCTCAGCTTCTC +
Preference number: 4 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLVTDFF*NHPQLL
Trigger: GAGAAGCTGAGGATGATTGCAAAAGAAATCCGTCAC...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGGATTCTTGGGCAATGTaGTGGTTGCTGGTTCACACT +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMDSWAM*WLLVHT
Trigger: AGTGTGAACCAGCAACCAGCACATTGCCCAAGAATC...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGGTATATACCAGCAGGTaGCAATATCATCAGGATAGT +
Preference number: 4 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRVYTSR*QYHQDS
Trigger: ACTATCCTGATGATATTGGCACCTGCTGGTATATAC...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGCTTGGAAAGCTGATCTaGGAGTCGGCGTTGTTTGAT +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMLGKLI*ESALFD
Trigger: ATCAAACAACGCCGACTCCCAGATCAGCTTTCCAAG...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACATCTCGCAGCAGCTCCTaGGCATCTTCATCTGAGCAA +
Preference number: 4 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTSRSSS*ASSSEQ
Trigger: TTGCTCAGATGAAGATGCCCAGGAGCTGCTGCGAGA...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGGAAGCTTTTCCCAGGTaGTTCGTAGTCTTGCCACCG +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPEAFPR*FVVLPP
Trigger: CGGTGGCAAGACTACGAACCACCTGGGAAAAGCTTC...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTTTTCTTCAAAGCTTGTaGAGAGTTTATGCCAAAAGG +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTFLQSL*RVYAKR
Trigger: CCTTTTGGCATAAACTCTCCACAAGCTTTGAAGAAA...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCATTTCTTCAAAGCTTGTaGAGAGTTTATGCCAAAAGG +
Preference number: 4 (lower is better)
Translates to: QGLLGCAFQATSLQSARAFLQSL*RVYAKR
Trigger: CCTTTTGGCATAAACTCTCCACAAGCTTTGAAGAAA...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 72 bp TATGCAGCGTCCCCAAAGCCACTTACAGGTCAGCCTTaGGTGACTAACCATTTTGCAAAGGCTGGCGTATTT +
Preference number: 4 (lower is better)
Translates to: YAASPKPLTGQP*VTNHFAKAGVF
Trigger: AAATACGCCAGCCTTTGCAAAATGGTTAGTCACCAAAGGCTGACCTGTAAGTGGCTTTGGGGACGCTGCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGCAACCTCCACGGTGCTaGGCTGAAGGAGGGAGATTT +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMQPPRC*AEGGRF
Trigger: AAATCTCCCTCCTTCAGCTCAGCACCGTGGAGGTTG...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGAGGGTCCATGTTGACTaGTGCCATTCGGCCAACGTG +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMRVHVD*CHSANV
Trigger: CACGTTGGCCGAATGGCATCAGTCAACATGGACCCT...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATAGGGTCCATGTTGACTaGTGCCATTCGGCCAACGTG +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDRVHVD*CHSANV
Trigger: CACGTTGGCCGAATGGCATCAGTCAACATGGACCCT...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGTGCAGTGACAGTGTCTaGAGACTCTCCTCATCCATC +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPCSDSV*RLSSSI
Trigger: GATGGATGAGGAGAGTCTTCAGACACTGTCACTGCA...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAGAAGAAATCTCACTGTaGCCTGAATCTGAGAAATTA +
Preference number: 4 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSEEISL*PESEKL
Trigger: TAATTTCTCAGATTCAGGTCACAGTGAGATTTCTTC...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGCAAAAGAAGAATTGCTaGCAATACTGGATCGTGAAG +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLQKKNC*QYWIVK
Trigger: CTTCACGATCCAGTATTGTCAGCAATTCTTCTTTTG...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGCGATCAAGTTCTCGGTaGTCCTTCACCATTACAATC +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMRSSSR*SFTITI
Trigger: GATTGTAATGGTGAAGGAGCACCGAGAACTTGATCG...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACATGCTCTTCCACCAAATaGATGGTCAGCCTCTCTGAG +
Preference number: 4 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTCSSTK*MVSLSE
Trigger: CTCAGAGAGGCTGACCATGCATTTGGTGGAAGAGCA...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGGGATCCACTACAGAATaGTCTTCCACCAAATGCATG +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMGSTTE*SSTKCM
Trigger: CATGCATTTGGTGGAAGAGCATTCTGTAGTGGATCC...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGGATGACCACTTCCTTTaGGGTGGTGTCCTTGCTGAT +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPDDHFL*GGVLAD
Trigger: ATCAGCAAGGACACCACCGCAAAGGAAGTGGTCATC...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCAATCTTGATGAAATaGTTAATGATCTTCATCCTC +
Preference number: 4 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTAILMK*LMIFIL
Trigger: GAGGATGAAGATCATTAAGCATTTCATCAAGATTGC...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGACAATGCTGACAGAATaGCTCTGGCGCCGTTCATCA +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPTMLTE*LWRRSS
Trigger: TGATGAACGGCGCCAGAGGCATTCTGTCAGCATTGT...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGGTCTTCTATGAATGTTaGATCCACTACAGAATGCTC +
Preference number: 4 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLVFYEC*IHYRML
Trigger: GAGCATTCTGTAGTGGATCCAACATTCATAGAAGAC...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAACTCTCTGATGGCCTaGATGACCACTTCCTTTGCG +
Preference number: 4 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTNSLMA*MTTSFA
Trigger: CGCAAAGGAAGTGGTCATCCAGGCCATCAGAGAGTT...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTTCCTGTCGGCAAGCTTaGAAAGCTGATCTGGGAGTC +
Preference number: 4 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSSCRQA*KADLGV
Trigger: GACTCCCAGATCAGCTTTCCAAGCTTGCCGACAGGA...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGTGTCTCCAGGATTCTTaGGCAATGTGCTGGTTGCTG +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPCLQDS*AMCWLL
Trigger: CAGCAACCAGCACATTGCCCAAGAATCCTGGAGACA...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTTTCTTCAAAGCTTGTaGAGAGTTTATGCCAAAAGG +
Preference number: 4 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLFLQSL*RVYAKR
Trigger: CCTTTTGGCATAAACTCTCCACAAGCTTTGAAGAAA...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATCGGTCCCCTTGGTCATaGGAAAGCTCCTCTGTGCTA +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDRSPWS*ESSSVL
Trigger: TAGCACAGAGGAGCTTTCCCATGACCAAGGGGACCG...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCAGTCTGTATGTTGTCATaGGAACCACTTGAGCATGAT +
Preference number: 4 (lower is better)
Translates to: VTILEFGMILRDVAGSSSVCMLS*EPLEHD
Trigger: ATCATGCTCAAGTGGTTCCCATGACAACATACAGAC...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCACATGGTCAGCCTCTCTaGGGTGCCCTTGATGACGAT +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAHGQPL*GALDDD
Trigger: ATCGTCATCAAGGGCACCTCAGAGAGGCTGACCATG...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGCAGTCCGTCTACTTTTaGGTCATTTCCCTCATGGAG +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPQSVYF*VISLME
Trigger: CTCCATGAGGGAAATGACTCAAAAGTAGACGGACTG...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGACAGCTTTTTGGCATTaGGGAAGGAACTACGGCGTA +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPTAFWH*GRNYGV
Trigger: TACGCCGTAGTTCCTTCCTCAATGCCAAAAAGCTGT...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACCAAAAGAAGAATTGCTaGCAATACTGGATCGTGAAG +
Preference number: 4 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNQKKNC*QYWIVK
Trigger: CTTCACGATCCAGTATTGTCAGCAATTCTTCTTTTG...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCACCCTCACGATGTCCCTaGTCATCAGAGGGTCTGATG +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAPSRCP*SSEGLM
Trigger: CATCAGACCCTCTGATGAGCAGGGACATCGTGAGGG...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCAGCAATCTTGATGAAATaGTTAATGATCTTCATCCTC +
Preference number: 4 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPAILMK*LMIFIL
Trigger: GAGGATGAAGATCATTAAGCATTTCATCAAGATTGC...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGTTGCATTCCCTGCAGTaGAAGGCAATCTTGATGAAA +
Preference number: 4 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMLHSLQ*KAILMK
Trigger: TTTCATCAAGATTGCCTTGCACTGCAGGGAATGCAA...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATCCCTTGATGACGATGTaGCCCTTCCTTGTTCCAGTC +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDPLMTM*PFLVPV
Trigger: GACTGGAACAAGGAAGGGCCACATCGTCATCAAGGG...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTGTTCAAAGTTCCTCATaGAGAGCTGCGTGGCAACCT +
Preference number: 4 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSVQSSS*RAAWQP
Trigger: AGGTTGCCACGCAGCTCTCCATGAGGAACTTTGAAC...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
3UTR CAA 72 bp GACAAGCACTGTACTCAAAGGATTTCATATCAGTCTTaGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTT +
Preference number: 4 (lower is better)
Translates to: DKHCTQRISYQS*SSLVGSRPRVV
Trigger: AACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGACTGATATGAAATCCTTTGAGTACAGTGCTTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTCTGGGCATCTTCATCTaGGCAAAGCGTTTCTGTTTC +
Preference number: 4 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSLGIFI*AKRFCF
Trigger: GAAACAGAAACGCTTTGCTCAGATGAAGATGCCCAG...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCACAGGGAACAGGGGAATaGCAGGAGGCTGTAAGTTCT +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAQGTGE*QEAVSS
Trigger: AGAACTTACAGCCTCCTGTCATTCCCCTGTTCCCTG...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGTGCAGTGACAGTGTCTaGAGACTCTCCTCATCCATC +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMCSDSV*RLSSSI
Trigger: GATGGATGAGGAGAGTCTTCAGACACTGTCACTGCA...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATAAATGTCAGAAAGACTaGTGCTCCCAGAGTCGCTGG +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDKCQKD*CSQSRW
Trigger: CCAGCGACTCTGGGAGCAGCAGTCTTTCTGACATTT...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATTGCTCTTCCACCAAATaGATGGTCAGCCTCTCTGAG +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDCSSTK*MVSLSE
Trigger: CTCAGAGAGGCTGACCATGCATTTGGTGGAAGAGCA...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTGCCTCAGTCCTACGATaGTATCATCTTGAGACTGAC +
Preference number: 4 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSASVLR*YHLETD
Trigger: GTCAGTCTCAAGATGATAGCATCGTAGGACTGAGGC...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGGGCCACTCAGGACATTaGGGTACTTTGCCATGTTTC +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMGHSGH*GTLPCF
Trigger: GAAACATGGCAAAGTACCGCAATGTCCTGAGTGGCC...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACACTTGTGGAGAGTTTATaGCAAAAGGAGGCAGATCCT +
Preference number: 4 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTLVESL*QKEADP
Trigger: AGGATCTGCCTCCTTTTGGCATAAACTCTCCACAAG...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGATTCTTTGTCCATGGTaGGCGAAACACCAAAGCTGT +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPILCPW*AKHQSC
Trigger: ACAGCTTTGGTGTTTCGCCCACCATGGACAAAGAAT...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCACCCTTGATGACGATGTaGCCCTTCCTTGTTCCAGTC +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAPLMTM*PFLVPV
Trigger: GACTGGAACAAGGAAGGGCCACATCGTCATCAAGGG...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACCAAATTTCTTCAGGTTaGCACAGCTGGTTTTTGATT +
Preference number: 4 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNQISSG*HSWFLI
Trigger: AATCAAAAACCAGCTGTGCCAACCTGAAGAAATTTG...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTCAAATTTCTTCAGGTTaGCACAGCTGGTTTTTGATT +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFQISSG*HSWFLI
Trigger: AATCAAAAACCAGCTGTGCCAACCTGAAGAAATTTG...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATTGTCTCCAGGATTCTTaGGCAATGTGCTGGTTGCTG +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDCLQDS*AMCWLL
Trigger: CAGCAACCAGCACATTGCCCAAGAATCCTGGAGACA...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCACTGACAGAATGCCTCTaGCGCCGTTCATCATGCAGA +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLALTECL*RRSSCR
Trigger: TCTGCATGATGAACGGCGCCAGAGGCATTCTGTCAG...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCACCTCCACGGAACCATTaGGAATCACTGACCAGGAAT +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAPPRNH*ESLTRN
Trigger: ATTCCTGGTCAGTGATTCTCAATGGTTCCGTGGAGG...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCATCTGAGGTAAGATGCTaGTCCGGGTCTTGTCGAGTA +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLASEVRC*SGSCRV
Trigger: TACTCGACAAGACCCGGATCAGCATCTTACCTCAGA...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGTTTGTTGGTCAGCCTTaGAAACTCTCAGTACCTGAT +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPFVGQP*KLSVPD
Trigger: ATCAGGTACTGAGAGTTTTCAAGGCTGACCAACAAA...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTGCAATCTTGATGAAATaGTTAATGATCTTCATCCTC +
Preference number: 4 (lower is better)
Translates to: VFVFLGGFETPGSSKASFAILMK*LMIFIL
Trigger: GAGGATGAAGATCATTAAGCATTTCATCAAGATTGC...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTATTCTTTGTCCATGGTaGGCGAAACACCAAAGCTGT +
Preference number: 4 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSILCPW*AKHQSC
Trigger: ACAGCTTTGGTGTTTCGCCCACCATGGACAAAGAAT...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGGCAATGCAGACAAACTaGCAGTCATCCACCTTAGTC +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMAMQTN*QSSTLV
Trigger: GACTAAGGTGGATGACTGCCAGTTTGTCTGCATTGC...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTACTTTCCGAGCCATCTaGGCATCTTCATACAGCTTT +
Preference number: 4 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSTFRAI*ASSYSF
Trigger: AAAGCTGTATGAAGATGCCCAGATGGCTCGGAAAGT...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTTTCTCTGGTGCTGAATaGTCTGTATGTTGTCATGGG +
Preference number: 4 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSFSGAE*SVCCHG
Trigger: CCCATGACAACATACAGACCATTCAGCACCAGAGAA...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATCTTTGCTTTTCTTGTTaGCCTTCTCGAGGCCTATCA +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDLCFSC*PSRGLS
Trigger: TGATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAG...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGCTTTGCTTTTCTTGTTaGCCTTCTCGAGGCCTATCA +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMLCFSC*PSRGLS
Trigger: TGATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAG...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGGACAATACTGGATCGTaGAGAAATCTCACTGTGACC +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMDNTGS*RNLTVT
Trigger: GGTCACAGTGAGATTTCTTCACGATCCAGTATTGTC...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCAACTTGCAGCATCCCCTaGATAGTCAAAGTGAGTGTG +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLATCSIP*IVKVSV
Trigger: CACACTCACTTTGACTATTCAGGGGATGCTGCAAGT...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGCTTGTGGAGAGTTTATaGCAAAAGGAGGCAGATCCT +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMLVESL*QKEADP
Trigger: AGGATCTGCCTCCTTTTGGCATAAACTCTCCACAAG...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGAACGCTTGCCAAAACTaGTCCTTGGAAGAAACATGG +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMNACQN*SLEETW
Trigger: CCATGTTTCTTCCAAGGAGCAGTTTTGGCAAGCGTT...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCAACGCCTAAAGCTTCCTaGAGAACGCTTGCCAAAACT +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLATPKAS*RTLAKT
Trigger: AGTTTTGGCAAGCGTTCTGCAGGAAGCTTTAGGCGT...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATACTTTCCGAGCCATCTaGGCATCTTCATACAGCTTT +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDTFRAI*ASSYSF
Trigger: AAAGCTGTATGAAGATGCCCAGATGGCTCGGAAAGT...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGGAAGAAATCTCACTGTaGCCTGAATCTGAGAAATTA +
Preference number: 4 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPEEISL*PESEKL
Trigger: TAATTTCTCAGATTCAGGTCACAGTGAGATTTCTTC...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR TCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCAGACAATACTGGATCGTaGAGAAATCTCACTGTGACC +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLADNTGS*RNLTVT
Trigger: GGTCACAGTGAGATTTCTTCACGATCCAGTATTGTC...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGTTGCATTCCCTGCAGTaGAAGGCAATCTTGATGAAA +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMLHSLQ*KAILMK
Trigger: TTTCATCAAGATTGCCTTGCACTGCAGGGAATGCAA...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGGTGACGGATTTCTTTTaGAATCATCCTCAGCTTCTC +
Preference number: 4 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMVTDFF*NHPQLL
Trigger: GAGAAGCTGAGGATGATTGCAAAAGAAATCCGTCAC...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR GCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATATTAACCTTAGTTGGTaGTCCCTCAGGTTGGATAAG +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDINLSW*SLRLDK
Trigger: CTTATCCAACCTGAGGGAGCACCAACTAAGGTTAAT...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTGTCTTCTATGAATGTTaGATCCACTACAGAATGCTC +
Preference number: 4 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSVFYEC*IHYRML
Trigger: GAGCATTCTGTAGTGGATCCAACATTCATAGAAGAC...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCATTCATCCTCTTCAGCTaGTTTGTTTCCCGCAGGATT +
Preference number: 4 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAFILFS*FVSRRI
Trigger: AATCCTGCGGGAAACAAACCAGCTGAAGAGGATGAA...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATGTCTTCTATGAATGTTaGATCCACTACAGAATGCTC +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDVFYEC*IHYRML
Trigger: GAGCATTCTGTAGTGGATCCAACATTCATAGAAGAC...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CCA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATCAAATTTCTTCAGGTTaGCACAGCTGGTTTTTGATT +
Preference number: 4 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDQISSG*HSWFLI
Trigger: AATCAAAAACCAGCTGTGCCAACCTGAAGAAATTTG...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp GCTGCCCGGCCGGCTGGCTGCGGCTGCAGGCGGCGTCTGGCCCGGTaGCGGGGCCTCAGTGGGCCGTGCCACCATGCGGGACCGCTGCAG +
Preference number: 5 (lower is better)
Translates to: AARPAGCGCRRRLAR*RGLSGPCHHAGPLQ
Trigger: CTGCAGCGGTCCCGCATGGTGGCACGGCCCACTGAGGCCCCGGCACCGGGCCAGACGCCGCCTGCAGCCGCAGCCAGCCGGCCGGGCAGC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp TGTGGCTTGCTGCCCGGCCGGCTGGCTGCGGCTGCAGGCGGCGTCTaGCCCGGTGCCGGGGCCTCAGTGGGCCGTGCCACCATGCGGGAC +
Preference number: 5 (lower is better)
Translates to: CGLLPGRLAAAAGGV*PGAGASVGRATMRD
Trigger: GTCCCGCATGGTGGCACGGCCCACTGAGGCCCCGGCACCGGGCCAGACGCCGCCTGCAGCCGCAGCCAGCCGGCCGGGCAGCAAGCCACA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp GCGCGAGGCGTGGGTCTGCGTCGCTGGGCTTGTGCCACTGTGGCTTaGTGCCCGGCCGGCTGGCTGCGGCTGCAGGCGGCGTCTGGCCCG +
Preference number: 5 (lower is better)
Translates to: ARGVGLRRWACATVA*CPAGWLRLQAASGP
Trigger: CGGGCCAGACGCCGCCTGCAGCCGCAGCCAGCCGGCCGGGCAGCAAGCCACAGTGGCACAAGCCCAGCGACGCAGACCCACGCCTCGCGC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp GGCTGCAGGCGGCGTCTGGCCCGGTGCCGGGGCCTCAGTGGGCCGTaGCACCATGCGGGACCGCTGCAGGGCCACGTTGTAATCCGGGGG +
Preference number: 5 (lower is better)
Translates to: GCRRRLARCRGLSGP*HHAGPLQGHVVIRG
Trigger: CCCCCGGATTACAACGTGGCCCTGCAGCGGTCCCGCATGGTGGCACGGCCCACTGAGGCCCCGGCACCGGGCCAGACGCCGCCTGCAGCC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp CGAGGCGTGGGTCTGCGTCGCTGGGCTTGTGCCACTGTGGCTTGCTaGCCGGCCGGCTGGCTGCGGCTGCAGGCGGCGTCTGGCCCGGTG +
Preference number: 5 (lower is better)
Translates to: RGVGLRRWACATVAC*PAGWLRLQAASGPV
Trigger: CACCGGGCCAGACGCCGCCTGCAGCCGCAGCCAGCCGGCCGGGCAGCAAGCCACAGTGGCACAAGCCCAGCGACGCAGACCCACGCCTCG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp GAAGGGCGCGAGGCGTGGGTCTGCGTCGCTGGGCTTGTGCCACTGTaGCTTGCTGCCCGGCCGGCTGGCTGCGGCTGCAGGCGGCGTCTG +
Preference number: 5 (lower is better)
Translates to: EGREAWVCVAGLVPL*LAARPAGCGCRRRL
Trigger: CAGACGCCGCCTGCAGCCGCAGCCAGCCGGCCGGGCAGCAAGCCACAGTGGCACAAGCCCAGCGACGCAGACCCACGCCTCGCGCCCTTC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp TGGCTGCGGCTGCAGGCGGCGTCTGGCCCGGTGCCGGGGCCTCAGTaGGCCGTGCCACCATGCGGGACCGCTGCAGGGCCACGTTGTAAT +
Preference number: 5 (lower is better)
Translates to: WLRLQAASGPVPGPQ*AVPPCGTAAGPRCN
Trigger: ATTACAACGTGGCCCTGCAGCGGTCCCGCATGGTGGCACGGCCCACTGAGGCCCCGGCACCGGGCCAGACGCCGCCTGCAGCCGCAGCCA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp GCAGACACTTGTTCATCTTCGTCCTCCTCCGCTCCTGCGAAGCCCTaGGGCTGGAAGGGCGCGAGGCGTGGGTCTGCGTCGCTGGGCTTG +
Preference number: 5 (lower is better)
Translates to: ADTCSSSSSSAPAKP*GWKGARRGSASLGL
Trigger: CAAGCCCAGCGACGCAGACCCACGCCTCGCGCCCTTCCAGCCGCAGGGCTTCGCAGGAGCGGAGGAGGACGAAGATGAACAAGTGTCTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp CCATGCGGGACCGCTGCAGGGCCACGTTGTAATCCGGGGGCTTCCTaGCCGGGTGGCAAGGCCCTTCTGGGAAATCGGCAATGGGGATGC +
Preference number: 5 (lower is better)
Translates to: PCGTAAGPRCNPGAS*PGGKALLGNRQWGC
Trigger: GCATCCCCATTGCCGATTTCCCAGAAGGGCCTTGCCACCCGGCCAGGAAGCCCCCGGATTACAACGTGGCCCTGCAGCGGTCCCGCATGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp GCCTGGAGGTGTGGGAGGCGGCTCCCGGTACCTGCCTTCCTTCCGTaGGATGAGTCCCTTGGTAGTGCTCGGCGTCACAGCTATGTGGGC +
Preference number: 5 (lower is better)
Translates to: AWRCGRRLPVPAFLP*DESLGSARRHSYVG
Trigger: GCCCACATAGCTGTGACGCCGAGCACTACCAAGGGACTCATCGCACGGAAGGAAGGCAGGTACCGGGAGCCGCCTCCCACACCTCCAGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp CCCTGGCTGACTTTATGTGGAGGTTGTGGCTGTGCCAGCGGCTGCTaGGGCTGTACTTTCTGCTGGGGCCCTGCACGTGGAGCCACTGGG +
Preference number: 5 (lower is better)
Translates to: PWLTLCGGCGCASGC*GCTFCWGPARGATG
Trigger: CCCAGTGGCTCCACGTGCAGGGCCCCAGCAGAAAGTACAGCCTCAGCAGCCGCTGGCACAGCCACAACCTCCACATAAAGTCAGCCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp GGGCACCTGCAGTCCCTGGCTGACTTTATGTGGAGGTTGTGGCTGTaGCAGCGGCTGCTGAGGCTGTACTTTCTGCTGGGGCCCTGCACG +
Preference number: 5 (lower is better)
Translates to: GHLQSLADFMWRLWL*QRLLRLYFLLGPCT
Trigger: CGTGCAGGGCCCCAGCAGAAAGTACAGCCTCAGCAGCCGCTGGCACAGCCACAACCTCCACATAAAGTCAGCCAGGGACTGCAGGTGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp GACATCCTTCCCACCCCTTCGCTTGATAGTGCCTGTGTCGCCTTCTaGGTCTTCTCCCCAGTAGCCCGTGGAAGACGCCCAGCTGGCCCG +
Preference number: 5 (lower is better)
Translates to: DILPTPSLDSACVAF*VFSPVARGRRPAGP
Trigger: CGGGCCAGCTGGGCGTCTTCCACGGGCTACTGGGGAGAAGACTCAGAAGGCGACACAGGCACTATCAAGCGAAGGGGTGGGAAGGATGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp TGGCTGTGCCAGCGGCTGCTGAGGCTGTACTTTCTGCTGGGGCCCTaGACGTGGAGCCACTGGGGAGGTCTCAGACTTGACAGGCTTTTT +
Preference number: 5 (lower is better)
Translates to: WLCQRLLRLYFLLGP*TWSHWGGLRLDRLF
Trigger: AAAAAGCCTGTCAAGTCTGAGACCTCCCCAGTGGCTCCACGTGCAGGGCCCCAGCAGAAAGTACAGCCTCAGCAGCCGCTGGCACAGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp CGACCGCTGTCAGCAGCATCGAGGGAAGCACGGTCCCCTTGGTCATaGGAAAGCTCCTCTGTGCTAGGAGAAGAGATGACCGTCGCTGCG +
Preference number: 5 (lower is better)
Translates to: RPLSAASREARSPWS*ESSSVLGEEMTVAA
Trigger: CGCAGCGACGGTCATCTCTTCTCCTAGCACAGAGGAGCTTTCCCATGACCAAGGGGACCGTGCTTCCCTCGATGCTGCTGACAGCGGTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp TTCGTGAAGGATAGAGGGACACAGCGGGCACCTGCAGTCCCTGGCTaGCTTTATGTGGAGGTTGTGGCTGTGCCAGCGGCTGCTGAGGCT +
Preference number: 5 (lower is better)
Translates to: FVKDRGTQRAPAVPG*LYVEVVAVPAAAEA
Trigger: AGCCTCAGCAGCCGCTGGCACAGCCACAACCTCCACATAAAGTCAGCCAGGGACTGCAGGTGCCCGCTGTGTCCCTCTATCCTTCACGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp AGGCCTCGGCTTTCAGACACTGGGGCATACGACCCTAAGCTGTATTaGTCAGGCTCCATCAGGGTCCGCCGCTCCATCCTGCCCACACCT +
Preference number: 5 (lower is better)
Translates to: RPRLSDTGAYDPKLY*SGSIRVRRSILPTP
Trigger: AGGTGTGGGCAGGATGGAGCGGCGGACCCTGATGGAGCCTGATCAATACAGCTTAGGGTCGTATGCCCCAGTGTCTGAAAGCCGAGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp GATGTCTTCCTCATCATCGTCATCCTCAGAGTCAACCGCCGTCTCTaGCAGTCCACTCAGGTCCATGTCACCGGCCTCGCTCTCCGTGGC +
Preference number: 5 (lower is better)
Translates to: DVFLIIVILRVNRRL*QSTQVHVTGLALRG
Trigger: GCCACGGAGAGCGAGGCCGGTGACATGGACCTGAGTGGACTGCCAGAGACGGCGGTTGACTCTGAGGATGACGATGATGAGGAAGACATC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp CTCCCACGACCGCTGTCAGCAGCATCGAGGGAAGCACGGTCCCCTTaGTCATGGGAAAGCTCCTCTGTGCTAGGAGAAGAGATGACCGTC +
Preference number: 5 (lower is better)
Translates to: LPRPLSAASREARSP*SWESSSVLGEEMTV
Trigger: GACGGTCATCTCTTCTCCTAGCACAGAGGAGCTTTCCCATGACCAAGGGGACCGTGCTTCCCTCGATGCTGCTGACAGCGGTCGTGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCCAGCACTGTGGCGTTaGCACTGCCCTGACTCAGGG +
Preference number: 5 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLPALWR*HCPDSG
Trigger: CCCTGAGTCAGGGCAGTGCAAACGCCACAGTGCTGG...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp TCCGCCGCTCCATCCTGCCCACACCTAGGTTGCTCTCCACAATGCTaGCAGAATGCCTCTGGCGCCGTTCATCATGCAGAGAGACTGGCA +
Preference number: 5 (lower is better)
Translates to: SAAPSCPHLGCSPQC*QNASGAVHHAERLA
Trigger: TGCCAGTCTCTCTGCATGATGAACGGCGCCAGAGGCATTCTGTCAGCATTGTGGAGAGCAACCTAGGTGTGGGCAGGATGGAGCGGCGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp GTCATGGGAAAGCTCCTCTGTGCTAGGAGAAGAGATGACCGTCGCTaGGGCATACAGGCCTCGGCTTTCAGACACTGGGGCATACGACCC +
Preference number: 5 (lower is better)
Translates to: VMGKLLCARRRDDRR*GIQASAFRHWGIRP
Trigger: GGGTCGTATGCCCCAGTGTCTGAAAGCCGAGGCCTGTATGCCGCAGCGACGGTCATCTCTTCTCCTAGCACAGAGGAGCTTTCCCATGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp ATAGAGGGACACAGCGGGCACCTGCAGTCCCTGGCTGACTTTATGTaGAGGTTGTGGCTGTGCCAGCGGCTGCTGAGGCTGTACTTTCTG +
Preference number: 5 (lower is better)
Translates to: IEGHSGHLQSLADFM*RLWLCQRLLRLYFL
Trigger: CAGAAAGTACAGCCTCAGCAGCCGCTGGCACAGCCACAACCTCCACATAAAGTCAGCCAGGGACTGCAGGTGCCCGCTGTGTCCCTCTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp TTCCGTGCGATGAGTCCCTTGGTAGTGCTCGGCGTCACAGCTATGTaGGCAGGCATAGGGACAGGTTTGGCTTCCTCTGTAGTCACGGGC +
Preference number: 5 (lower is better)
Translates to: FRAMSPLVVLGVTAM*AGIGTGLASSVVTG
Trigger: GCCCGTGACTACAGAGGAAGCCAAACCTGTCCCTATGCCTGCCCACATAGCTGTGACGCCGAGCACTACCAAGGGACTCATCGCACGGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTCCAGCACTGTGGCGTTaGCACTGCCCTGACTCAGGG +
Preference number: 5 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLPALWR*HCPDSG
Trigger: CCCTGAGTCAGGGCAGTGCAAACGCCACAGTGCTGG...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCACCAGCTGGCCCGGGATaGGGCTTGTTCAAGACTCTC +
Preference number: 5 (lower is better)
Translates to: QGLLGCAFQATSLQSARAPAGPG*GLFKTL
Trigger: GAGAGTCTTGAACAAGCCCAATCCCGGGCCAGCTGG...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGTCTGCGTCGCTGGGCTaGTGCCACTGTGGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRSASLG*CHCGLL
Trigger: CAGCAAGCCACAGTGGCACAAGCCCAGCGACGCAGA...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCTGAAGGAGGGAGATTaGGCTCTCTCGCAGCAGCTC +
Preference number: 5 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLLKEGD*ALSQQL
Trigger: GAGCTGCTGCGAGAGAGCCAAATCTCCCTCCTTCAG...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTCTGAAGGAGGGAGATTaGGCTCTCTCGCAGCAGCTC +
Preference number: 5 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTLKEGD*ALSQQL
Trigger: GAGCTGCTGCGAGAGAGCCAAATCTCCCTCCTTCAG...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCAAGGGCAGGGTCCATGTaGACTGATGCCATTCGGCCA +
Preference number: 5 (lower is better)
Translates to: QGLLGCAFQATSLQSARARAGSM*TDAIRP
Trigger: TGGCCGAATGGCATCAGTCAACATGGACCCTGCCCT...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGGGAAGCACGGTCCCCTaGGTCATGGGAAAGCTCCTC +
Preference number: 5 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRGSTVP*VMGKLL
Trigger: GAGGAGCTTTCCCATGACCAAGGGGACCGTGCTTCC...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCACCAGCTGGCCCGGGATaGGGCTTGTTCAAGACTCTC +
Preference number: 5 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSPAGPG*GLFKTL
Trigger: GAGAGTCTTGAACAAGCCCAATCCCGGGCCAGCTGG...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCATTCCCACCCCTTCGCTaGATAGTGCCTGTGTCGCCT +
Preference number: 5 (lower is better)
Translates to: QGLLGCAFQATSLQSARAFPPLR*IVPVSP
Trigger: AGGCGACACAGGCACTATCAAGCGAAGGGGTGGGAA...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGTCTGCGTCGCTGGGCTaGTGCCACTGTGGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLSASLG*CHCGLL
Trigger: CAGCAAGCCACAGTGGCACAAGCCCAGCGACGCAGA...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACAAGTCTGCAGGGAGTTaGGAGGACCATGGCTGCAGG +
Preference number: 5 (lower is better)
Translates to: RRALHLAFSICSVPKATYKSAGS*EDHGCR
Trigger: CCTGCAGCCATGGTCCTCCAAACTCCCTGCAGACTT...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118340.7
CDS GCA 90 bp GGCAAGTCAGGAGTAGTGCTGAAGTCCAGAATCCGGTGGTGTGACTaGAGCAAGTCAGGGTTACTGGAGGACAGCGTTCCACTGACAGGC +
Preference number: 5 (lower is better)
Translates to: GKSGVVLKSRIRWCD*SKSGLLEDSVPLTG
Trigger: GCCTGTCAGTGGAACGCTGTCCTCCAGTAACCCTGACTTGCTGCAGTCACACCACCGGATTCTGGACTTCAGCACTACTCCTGACTTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp TCCATCCTGCCCACACCTAGGTTGCTCTCCACAATGCTGACAGAATaGCTCTGGCGCCGTTCATCATGCAGAGAGACTGGCACCGAGTCA +
Preference number: 5 (lower is better)
Translates to: SILPTPRLLSTMLTE*LWRRSSCRETGTES
Trigger: TGACTCGGTGCCAGTCTCTCTGCATGATGAACGGCGCCAGAGGCATTCTGTCAGCATTGTGGAGAGCAACCTAGGTGTGGGCAGGATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp CTGCTGAGGCTGTACTTTCTGCTGGGGCCCTGCACGTGGAGCCACTaGGGAGGTCTCAGACTTGACAGGCTTTTTGTCTCCAGGATTCTT +
Preference number: 5 (lower is better)
Translates to: LLRLYFLLGPCTWSH*GGLRLDRLFVSRIL
Trigger: AAGAATCCTGGAGACAAAAAGCCTGTCAAGTCTGAGACCTCCCCAGTGGCTCCACGTGCAGGGCCCCAGCAGAAAGTACAGCCTCAGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp CGCCTTCTGAGTCTTCTCCCCAGTAGCCCGTGGAAGACGCCCAGCTaGCCCGGGATTGGGCTTGTTCAAGACTCTCTCTACTTTGATTCT +
Preference number: 5 (lower is better)
Translates to: RLLSLLPSSPWKTPS*PGIGLVQDSLYFDS
Trigger: AGAATCAAAGTAGAGAGAGTCTTGAACAAGCCCAATCCCGGGCCAGCTGGGCGTCTTCCACGGGCTACTGGGGAGAAGACTCAGAAGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGACTGACATCGTCATATaGGCAAAGGCCGGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLTDIVI*AKAGSW
Trigger: CCAGCTGCCGGCCTTTGCCAATATGACGATGTCAGT...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACCCTGCTTCAGTGGCTTaGCTACACGAGTCAACGCTG +
Preference number: 5 (lower is better)
Translates to: RRALHLAFSICSVPKATYPASVA*LHESTL
Trigger: CAGCGTTGACTCGTGTAGCAAAGCCACTGAAGCAGG...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGGGCAGGGTCCATGTaGACTGATGCCATTCGGCCA +
Preference number: 5 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRRAGSM*TDAIRP
Trigger: TGGCCGAATGGCATCAGTCAACATGGACCCTGCCCT...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGGACTTTATGTGGAGGTaGTGGCTGTGCCAGCGGCTG +
Preference number: 5 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRDFMWR*WLCQRL
Trigger: CAGCCGCTGGCACAGCCACAACCTCCACATAAAGTC...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAGACTTTATGTGGAGGTaGTGGCTGTGCCAGCGGCTG +
Preference number: 5 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSDFMWR*WLCQRL
Trigger: CAGCCGCTGGCACAGCCACAACCTCCACATAAAGTC...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCATTCCCACCCCTTCGCTaGATAGTGCCTGTGTCGCCT +
Preference number: 5 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPFPPLR*IVPVSP
Trigger: AGGCGACACAGGCACTATCAAGCGAAGGGGTGGGAA...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTGCGTCGCTGGGCTaGTGCCACTGTGGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: VFVFLGGFETPGSSKASFSASLG*CHCGLL
Trigger: CAGCAAGCCACAGTGGCACAAGCCCAGCGACGCAGA...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp CTGATCTGGGAGTCGGCGTTGTTTGATAACTCCCTCTGGTGTGACTaGGACCTCACAGAGGGAATACTGCTCTGGGGTGGCAGTGACAGC +
Preference number: 5 (lower is better)
Translates to: LIWESALFDNSLWCD*DLTEGILLWGGSDS
Trigger: GCTGTCACTGCCACCCCAGAGCAGTATTCCCTCTGTGAGGTCTCAGTCACACCAGAGGGAGTTATCAAACAACGCCGACTCCCAGATCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAACTGACATCGTCATATaGGCAAAGGCCGGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSTDIVI*AKAGSW
Trigger: CCAGCTGCCGGCCTTTGCCAATATGACGATGTCAGT...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCACCTGCTTCAGTGGCTTaGCTACACGAGTCAACGCTG +
Preference number: 5 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPPASVA*LHESTL
Trigger: CAGCGTTGACTCGTGTAGCAAAGCCACTGAAGCAGG...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGCCAGCACTGTGGCGTTaGCACTGCCCTGACTCAGGG +
Preference number: 5 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMPALWR*HCPDSG
Trigger: CCCTGAGTCAGGGCAGTGCAAACGCCACAGTGCTGG...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACGGAAGCACGGTCCCCTaGGTCATGGGAAAGCTCCTC +
Preference number: 5 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNGSTVP*VMGKLL
Trigger: GAGGAGCTTTCCCATGACCAAGGGGACCGTGCTTCC...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTTGTCATGGGAACCACTaGAGCATGATGTCCAGCTCC +
Preference number: 5 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTCHGNH*SMMSSS
Trigger: GGAGCTGGACATCATGCTCAAGTGGTTCCCATGACA...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAGGCCCGGGATTGGGCTaGTTCAAGACTCTCTCTACT +
Preference number: 5 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSGPGLG*FKTLST
Trigger: AGTAGAGAGAGTCTTGAACAAGCCCAATCCCGGGCC...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp CTTCTCCAGGCAGTCCCTCACGATGTCCCTGCTCATCAGAGGGTCTaGTGCTCTCTCGATGTCTTCCTCATCATCGTCATCCTCAGAGTC +
Preference number: 5 (lower is better)
Translates to: LLQAVPHDVPAHQRV*CSLDVFLIIVILRV
Trigger: GACTCTGAGGATGACGATGATGAGGAAGACATCGAGAGAGCATCAGACCCTCTGATGAGCAGGGACATCGTGAGGGACTGCCTGGAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp ATCTGGCAAGTCAGGAGTAGTGCTGAAGTCCAGAATCCGGTGGTGTaGCTGCAGCAAGTCAGGGTTACTGGAGGACAGCGTTCCACTGAC +
Preference number: 5 (lower is better)
Translates to: IWQVRSSAEVQNPVV*LQQVRVTGGQRSTD
Trigger: GTCAGTGGAACGCTGTCCTCCAGTAACCCTGACTTGCTGCAGTCACACCACCGGATTCTGGACTTCAGCACTACTCCTGACTTGCCAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCACGATGTGGCCCTTCCTaGTTCCAGTCCGATCAAGTT +
Preference number: 5 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSRCGPS*FQSDQV
Trigger: AACTTGATCGGACTGGAACAAGGAAGGGCCACATCG...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCACTGAGGCTCGGGTCATaGAACCACTCCAATAACTTC +
Preference number: 5 (lower is better)
Translates to: QGLLGCAFQATSLQSARALRLGS*NHSNNF
Trigger: GAAGTTATTGGAGTGGTTCAATGACCCGAGCCTCAG...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGCCTGCTTCAGTGGCTTaGCTACACGAGTCAACGCTG +
Preference number: 5 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLPASVA*LHESTL
Trigger: CAGCGTTGACTCGTGTAGCAAAGCCACTGAAGCAGG...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTCTTCCTCCCACGGTGTaGGCTTTGCTTTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTLPPTV*ALLFLL
Trigger: CAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAG...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACTTTGCGGTGGTGTCCTaGCTGATCATGATGTACCTG +
Preference number: 5 (lower is better)
Translates to: RRALHLAFSICSVPKATYFAVVS*LIMMYL
Trigger: CAGGTACATCATGATCAGCAAGGACACCACCGCAAA...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACTCCTCTTCAGCTGGTTaGTTTCCCGCAGGATTTCAG +
Preference number: 5 (lower is better)
Translates to: RRALHLAFSICSVPKATYSSSAG*FPAGFQ
Trigger: CTGAAATCCTGCGGGAAACAAACCAGCTGAAGAGGA...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTCCTCTTCAGCTGGTTaGTTTCCCGCAGGATTTCAG +
Preference number: 5 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLSSSAG*FPAGFQ
Trigger: CTGAAATCCTGCGGGAAACAAACCAGCTGAAGAGGA...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAACGTGAGGTCCTTCTaGATGACAGGGAACAGGGGA +
Preference number: 5 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRNVRSF*MTGNRG
Trigger: TCCCCTGTTCCCTGTCATCAAGAAGGACCTCACGTT...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTAGGGCAGGGTCCATGTaGACTGATGCCATTCGGCCA +
Preference number: 5 (lower is better)
Translates to: VFVFLGGFETPGSSKASFRAGSM*TDAIRP
Trigger: TGGCCGAATGGCATCAGTCAACATGGACCCTGCCCT...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTGACTTTATGTGGAGGTaGTGGCTGTGCCAGCGGCTG +
Preference number: 5 (lower is better)
Translates to: VFVFLGGFETPGSSKASFDFMWR*WLCQRL
Trigger: CAGCCGCTGGCACAGCCACAACCTCCACATAAAGTC...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGTCATGGGAACCACTaGAGCATGATGTCCAGCTCC +
Preference number: 5 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLCHGNH*SMMSSS
Trigger: GGAGCTGGACATCATGCTCAAGTGGTTCCCATGACA...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACTTCCCACCCCTTCGCTaGATAGTGCCTGTGTCGCCT +
Preference number: 5 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNFPPLR*IVPVSP
Trigger: AGGCGACACAGGCACTATCAAGCGAAGGGGTGGGAA...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp CACCTGTGGGTGCAGGCTGTCAGTGAGGTGCAGTTTTGTGAAGTCTaGAGGGAGCTGAGATTTAGTGCATTCCGTATGGTAGCCTCTAGG +
Preference number: 5 (lower is better)
Translates to: HLWVQAVSEVQFCEV*RELRFSAFRMVASR
Trigger: CCTAGAGGCTACCATACGGAATGCACTAAATCTCAGCTCCCTGCAGACTTCACAAAACTGCACCTCACTGACAGCCTGCACCCACAGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAACCTCCACGGAACCATaGAGAATCACTGACCAGGAA +
Preference number: 5 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSTSTEP*RITDQE
Trigger: TTCCTGGTCAGTGATTCTCAATGGTTCCGTGGAGGT...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCAACCTCCACGGAACCATaGAGAATCACTGACCAGGAA +
Preference number: 5 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPTSTEP*RITDQE
Trigger: TTCCTGGTCAGTGATTCTCAATGGTTCCGTGGAGGT...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTCTGAGGCTCGGGTCATaGAACCACTCCAATAACTTC +
Preference number: 5 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLLRLGS*NHSNNF
Trigger: GAAGTTATTGGAGTGGTTCAATGACCCGAGCCTCAG...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCTTTGCTTTTCTTGTaGACCTTCTCGAGGCCTATC +
Preference number: 5 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTALLFL*TFSRPI
Trigger: GATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGC...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCACTTCCTCCCACGGTGTaGGCTTTGCTTTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPLPPTV*ALLFLL
Trigger: CAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAG...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTTTGCGGTGGTGTCCTaGCTGATCATGATGTACCTG +
Preference number: 5 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLFAVVS*LIMMYL
Trigger: CAGGTACATCATGATCAGCAAGGACACCACCGCAAA...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCATTTGCGGTGGTGTCCTaGCTGATCATGATGTACCTG +
Preference number: 5 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSFAVVS*LIMMYL
Trigger: CAGGTACATCATGATCAGCAAGGACACCACCGCAAA...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGATACCTTCCACTCAGTaGTATCCTGTCGGCAAGCTT +
Preference number: 5 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLIPSTQ*YPVGKL
Trigger: AAGCTTGCCGACAGGATACAACTGAGTGGAAGGTAT...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACCCAGTCCGTCTACTTTaGAGTCATTTCCCTCATGGA +
Preference number: 5 (lower is better)
Translates to: RRALHLAFSICSVPKATYPVRLL*SHFPHG
Trigger: TCCATGAGGGAAATGACTCAAAAGTAGACGGACTGG...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCACCAGTCCGTCTACTTTaGAGTCATTTCCCTCATGGA +
Preference number: 5 (lower is better)
Translates to: QGLLGCAFQATSLQSARAPVRLL*SHFPHG
Trigger: TCCATGAGGGAAATGACTCAAAAGTAGACGGACTGG...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GAGAAGAAGCCCCATGCTGCTTTAAGGCAGGGAAGGAGGCAAACTGGTCCACCAATCTCCAGCTCCAGGTaGGACAGGTATTGCTTCACT +
Preference number: 5 (lower is better)
Translates to: EKKPHAALRQGRRQTGPPISSSR*DRYCFT
Trigger: AGTGAAGCAATACCTGTCCAACCTGGAGCTGGAGAT...TGGTGGACCAGTTTGCCTCCTTCCCTGCCTTAAAGCAGCATGGGGCTTCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTGACTTGACAGGCTTTTaGTCTCCAGGATTCTTGGGC +
Preference number: 5 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLDLTGF*SPGFLG
Trigger: GCCCAAGAATCCTGGAGACAAAAAGCCTGTCAAGTC...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTTCAAACAGCAGACACTaGTTCATCTTCGTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTSNSRH*FIFVLL
Trigger: GAGGAGGACGAAGATGAACAAGTGTCTGCTGTTTGA...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGTGGTGCTCCCTCAGGTaGGATAAGGCTTCCATTCCA +
Preference number: 5 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLWCSLR*DKASIP
Trigger: TGGAATGGAAGCCTTATCCAACCTGAGGGAGCACCA...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS TCA 90 bp TTGGGCAATGTGCTGGTTGCTGGTTCACACTGCAGTGACAGTGTCTaGAGACTCTCCTCATCCATCTCCAGCTCCAGGTTGGACAGGTAT +
Preference number: 5 (lower is better)
Translates to: LGNVLVAGSHCSDSV*RLSSSISSSRLDRY
Trigger: ATACCTGTCCAACCTGGAGCTGGAGATGGATGAGGAGAGTCTTCAGACACTGTCACTGCAGTGTGAACCAGCAACCAGCACATTGCCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp TCCAGGATTCTTGGGCAATGTGCTGGTTGCTGGTTCACACTGCAGTaGCAGTGTCTGAAGACTCTCCTCATCCATCTCCAGCTCCAGGTT +
Preference number: 5 (lower is better)
Translates to: SRILGQCAGCWFTLQ*QCLKTLLIHLQLQV
Trigger: AACCTGGAGCTGGAGATGGATGAGGAGAGTCTTCAGACACTGTCACTGCAGTGTGAACCAGCAACCAGCACATTGCCCAAGAATCCTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp TTGGTCCATATGGCCACCGGAGGCCCATATACTTGCAGCATCCCCTaGATAGTCAAAGTGAGTGTGCCCAAATGGCAGTGTTTCCCAGCT +
Preference number: 5 (lower is better)
Translates to: LVHMATGGPYTCSIP*IVKVSVPKWQCFPA
Trigger: AGCTGGGAAACACTGCCATTTGGGCACACTCACTTTGACTATTCAGGGGATGCTGCAAGTATATGGGCCTCCGGTGGCCATATGGACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTCGATGTGGCCCTTCCTaGTTCCAGTCCGATCAAGTT +
Preference number: 5 (lower is better)
Translates to: VFVFLGGFETPGSSKASFRCGPS*FQSDQV
Trigger: AACTTGATCGGACTGGAACAAGGAAGGGCCACATCG...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGGTCATCAGTCTTCGTTaGGCTTTAGCTGCACATGCA +
Preference number: 5 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRVISLR*ALAAHA
Trigger: TGCATGTGCAGCTAAAGCCAAACGAAGACTGATGAC...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTGTCATCAGTCTTCGTTaGGCTTTAGCTGCACATGCA +
Preference number: 5 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLVISLR*ALAAHA
Trigger: TGCATGTGCAGCTAAAGCCAAACGAAGACTGATGAC...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAGCTTTGCTTTTCTTGTaGACCTTCTCGAGGCCTATC +
Preference number: 5 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSALLFL*TFSRPI
Trigger: GATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGC...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGTTGGCTTTGCTTTTCTaGTTGACCTTCTCGAGGCCT +
Preference number: 5 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRLALLF*LTFSRP
Trigger: AGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGCCAA...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAATACCTTCCACTCAGTaGTATCCTGTCGGCAAGCTT +
Preference number: 5 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSIPSTQ*YPVGKL
Trigger: AAGCTTGCCGACAGGATACAACTGAGTGGAAGGTAT...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAGGACATTGCGGTACTTaGCCATGTTTCTGGAAGGAT +
Preference number: 5 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSGHCGT*PCFWKD
Trigger: ATCCTTCCAGAAACATGGCAAAGTACCGCAATGTCC...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGGGACATTGCGGTACTTaGCCATGTTTCTGGAAGGAT +
Preference number: 5 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRGHCGT*PCFWKD
Trigger: ATCCTTCCAGAAACATGGCAAAGTACCGCAATGTCC...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCACTCAGCTTCTCAAAGTaGACCAGTCCGTCTACTTTT +
Preference number: 5 (lower is better)
Translates to: QGLLGCAFQATSLQSARALSFSK*TSPSTF
Trigger: AAAAGTAGACGGACTGGTCAACTTTGAGAAGCTGAG...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGCTCAGCTTCTCAAAGTaGACCAGTCCGTCTACTTTT +
Preference number: 5 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLLSFSK*TSPSTF
Trigger: AAAAGTAGACGGACTGGTCAACTTTGAGAAGCTGAG...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCATACAGCTTTTTGGCATaGAGGAAGGAACTACGGCGT +
Preference number: 5 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSYSFLA*RKELRR
Trigger: ACGCCGTAGTTCCTTCCTCAATGCCAAAAAGCTGTA...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGTACAGCTTTTTGGCATaGAGGAAGGAACTACGGCGT +
Preference number: 5 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRYSFLA*RKELRR
Trigger: ACGCCGTAGTTCCTTCCTCAATGCCAAAAAGCTGTA...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACCGGAGGCCCATATACTaGCAGCATCCCCTGAATAGT +
Preference number: 5 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNRRPIY*QHPLNS
Trigger: ACTATTCAGGGGATGCTGCAAGTATATGGGCCTCCG...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGATCAGAAAACATCATTaGGTCCATATGGCCACCGGA +
Preference number: 5 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLIRKHH*VHMATG
Trigger: TCCGGTGGCCATATGGACCAAATGATGTTTTCTGAT...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGGGCCCGGGATTGGGCTaGTTCAAGACTCTCTCTACT +
Preference number: 5 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMGPGLG*FKTLST
Trigger: AGTAGAGAGAGTCTTGAACAAGCCCAATCCCGGGCC...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp TCACTTTCCGAGCCATCTGGGCATCTTCATACAGCTTTTTGGCATTaGGGAAGGAACTACGGCGTACCCGCTTTTTATGCCCGCCTGTCT +
Preference number: 5 (lower is better)
Translates to: SLSEPSGHLHTAFWH*GRNYGVPAFYARLS
Trigger: AGACAGGCGGGCATAAAAAGCGGGTACGCCGTAGTTCCTTCCTCAATGCCAAAAAGCTGTATGAAGATGCCCAGATGGCTCGGAAAGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp CTTCTAATATCTGATCCCCGCGCTTCAAGCCTGCTTCAGTGGCTTTaGTACACGAGTCAACGCTGTCCACGAAGATGCCAAAGCCCTTTT +
Preference number: 5 (lower is better)
Translates to: LLISDPRASSLLQWL*YTSQRCPRRCQSPF
Trigger: AAAAGGGCTTTGGCATCTTCGTGGACAGCGTTGACTCGTGTAGCAAAGCCACTGAAGCAGGCTTGAAGCGCGGGGATCAGATATTAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp GAGTGTGCCCAAATGGCAGTGTTTCCCAGCTTCTCTGGTGCTGAATaGTCTGTATGTTGTCATGGGAACCACTTGAGCATGATGTCCAGC +
Preference number: 5 (lower is better)
Translates to: ECAQMAVFPSFSGAE*SVCCHGNHLSMMSS
Trigger: GCTGGACATCATGCTCAAGTGGTTCCCATGACAACATACAGACCATTCAGCACCAGAGAAGCTGGGAAACACTGCCATTTGGGCACACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCACTTCCCGGGAAGGCTTaGTTAACGTCATCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: VTILEFGMILRDVAGSSSLPGKA*LTSSVF
Trigger: GAAGACTGATGACGTTAACAAAGCCTTCCCGGGAAG...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGTTGGCTTTGCTTTTCTaGTTGACCTTCTCGAGGCCT +
Preference number: 5 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLLALLF*LTFSRP
Trigger: AGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGCCAA...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACTACGATGCTATCATCTaGAGACTGACCAATCCCAAT +
Preference number: 5 (lower is better)
Translates to: RRALHLAFSICSVPKATYYDAII*RLTNPN
Trigger: ATTGGGATTGGTCAGTCTCAAGATGATAGCATCGTA...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGAACGTGAGGTCCTTCTaGATGACAGGGAACAGGGGA +
Preference number: 5 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMNVRSF*MTGNRG
Trigger: TCCCCTGTTCCCTGTCATCAAGAAGGACCTCACGTT...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGCTCAGCTTCTCAAAGTaGACCAGTCCGTCTACTTTT +
Preference number: 5 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRLSFSK*TSPSTF
Trigger: AAAAGTAGACGGACTGGTCAACTTTGAGAAGCTGAG...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTAGGACGCATTTGATATaGTATCTTCTGCTTGCTTCC +
Preference number: 5 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTRTHLI*YLLLAS
Trigger: GGAAGCAAGCAGAAGATACAATATCAAATGCGTCCT...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGTGTCATGGGAACCACTaGAGCATGATGTCCAGCTCC +
Preference number: 5 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMCHGNH*SMMSSS
Trigger: GGAGCTGGACATCATGCTCAAGTGGTTCCCATGACA...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp TCAGCTTGTTTCTTCCTCCCACGGTGTTGGCTTTGCTTTTCTTGTTaGCCTTCTCGAGGCCTATCACCTGTTCTACGTCTACGGCGAGAT +
Preference number: 5 (lower is better)
Translates to: SACFFLPRCWLCFSC*PSRGLSPVLRLRRD
Trigger: ATCTCGCCGTAGACGTAGAACAGGTGATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAGAAACAAGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp AGCTCCCGTCTTACTGACATCGTCATATTGGCAAAGGCCGGCAGCTaGTGCATAAATTCCAGTAGTTGTTCGATGTCATCGTCAGTCCTG +
Preference number: 5 (lower is better)
Translates to: SSRLTDIVILAKAGS*CINSSSCSMSSSVL
Trigger: CAGGACTGACGATGACATCGAACAACTACTGGAATTTATGCACCAGCTGCCGGCCTTTGCCAATATGACGATGTCAGTAAGACGGGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp GAATCACTGACCAGGAATCCAGCTCTTCTCCGTCGTTTAACACAATaGTTCCAGCTCTTTCCACCACTGCAAACACCATCACGGCACAGA +
Preference number: 5 (lower is better)
Translates to: ESLTRNPALLRRLTQ*FQLFPPLQTPSRHR
Trigger: TCTGTGCCGTGATGGTGTTTGCAGTGGTGGAAAGAGCTGGAACCATTGTGTTAAACGACGGAGAAGAGCTGGATTCCTGGTCAGTGATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 90 bp TCCAGCTCCAGGTTGGACAGGTATTGCTTCACTTTCCGAGCCATCTaGGCATCTTCATACAGCTTTTTGGCATTGAGGAAGGAACTACGG +
Preference number: 5 (lower is better)
Translates to: SSSRLDRYCFTFRAI*ASSYSFLALRKELR
Trigger: CCGTAGTTCCTTCCTCAATGCCAAAAAGCTGTATGAAGATGCCCAGATGGCTCGGAAAGTGAAGCAATACCTGTCCAACCTGGAGCTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGCCTTTCATGTATTCTTaGTCCATGGTGGGCGAAACA +
Preference number: 5 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLPFMYS*SMVGET
Trigger: TGTTTCGCCCACCATGGACAAAGAATACATGAAAGG...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGCTTCCCGGGAAGGCTTaGTTAACGTCATCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMLPGKA*LTSSVF
Trigger: GAAGACTGATGACGTTAACAAAGCCTTCCCGGGAAG...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTTCAAATTTCTTCAGGTaGGCACAGCTGGTTTTTGAT +
Preference number: 5 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTSNFFR*AQLVFD
Trigger: ATCAAAAACCAGCTGTGCCAACCTGAAGAAATTTGA...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTCAGTGCAAGGCAATCTaGATGAAATGCTTAATGATC +
Preference number: 5 (lower is better)
Translates to: PRLQGLGRLLVLSFGWLTQCKAI*MKCLMI
Trigger: GATCATTAAGCATTTCATCAAGATTGCCTTGCACTG...AGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGATGGAGTTAAAATTCTaGCATTCCCTGCAGTGCAAG +
Preference number: 5 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRMELKF*HSLQCK
Trigger: CTTGCACTGCAGGGAATGCAAGAATTTTAACTCCAT...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGAGCTTTTCATATTTATaGGGAAGCTTTTCCCAGGTG +
Preference number: 5 (lower is better)
Translates to: QGSKAWDVFLCSPLGGSLSFSYL*GSFSQV
Trigger: CACCTGGGAAAAGCTTCCCAATAAATATGAAAAGCT...CAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp AGACGGGCGCTACACTTGGCCTTCTCCATATGCAGCGTCCCCAAAGCCACTTACAGCTTTTCATATTTATaGGGAAGCTTTTCCCAGGTG +
Preference number: 5 (lower is better)
Translates to: RRALHLAFSICSVPKATYSFSYL*GSFSQV
Trigger: CACCTGGGAAAAGCTTCCCAATAAATATGAAAAGCT...GTAAGTGGCTTTGGGGACGCTGCATATGGAGAAGGCCAAGTGTAGCGCCCGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTCTTTGTCTTCCTTGGTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTACAGCTTTTTGGCATaGAGGAAGGAACTACGGCGT +
Preference number: 5 (lower is better)
Translates to: VFVFLGGFETPGSSKASFYSFLA*RKELRR
Trigger: ACGCCGTAGTTCCTTCCTCAATGCCAAAAAGCTGTA...AAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCACCAAGGAAGACAAAGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGTGGGCAATGTGCTGGTaGCTGGTTCACACTGCAGTG +
Preference number: 5 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPWAMCW*LVHTAV
Trigger: CACTGCAGTGTGAACCAGCAACCAGCACATTGCCCA...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGTATTGTATCTTCTGCTaGCTTCCTGTGACGCTCCAA +
Preference number: 5 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLYCIFC*LPVTLQ
Trigger: TTGGAGCGTCACAGGAAGCAAGCAGAAGATACAATA...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTTGGGTGGCTCACTGTGGATCAAGGACGCATTTGATATaGTATCTTCTGCTTGCTTCC +
Preference number: 5 (lower is better)
Translates to: PRLGTSSCALLWVAHCGSRTHLI*YLLLAS
Trigger: GGAAGCAAGCAGAAGATACAATATCAAATGCGTCCT...TGATCCACAGTGAGCCACCCAAAGGAGAGCACAAGAAGACGTCCCAAGCCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCAGAGTCAAAAGAAGAATaGCTGACAATACTGGATCGT +
Preference number: 5 (lower is better)
Translates to: QGLLGCAFQATSLQSARAESKEE*LTILDR
Trigger: ACGATCCAGTATTGTCAGCAATTCTTCTTTTGACTC...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGGGAAGCACGGTCCCCTaGGTCATGGGAAAGCTCCTC +
Preference number: 5 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMGSTVP*VMGKLL
Trigger: GAGGAGCTTTCCCATGACCAAGGGGACCGTGCTTCC...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGATCAGAAAACATCATTaGGTCCATATGGCCACCGGA +
Preference number: 5 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLIRKHH*VHMATG
Trigger: TCCGGTGGCCATATGGACCAAATGATGTTTTCTGAT...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATCCAGCTGGCCCGGGATaGGGCTTGTTCAAGACTCTC +
Preference number: 5 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDPAGPG*GLFKTL
Trigger: GAGAGTCTTGAACAAGCCCAATCCCGGGCCAGCTGG...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACTCAAACAGCAGACACTaGTTCATCTTCGTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNSNSRH*FIFVLL
Trigger: GAGGAGGACGAAGATGAACAAGTGTCTGCTGTTTGA...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 90 bp AAATCTCACTGTGACCTGAATCTGAGAAATTATCCACGGTGCCACTaGGAGCCAGTGCATAACCTTTCCTTGGAGAGCTCTGAGGTGAGG +
Preference number: 5 (lower is better)
Translates to: KSHCDLNLRNYPRCH*EPVHNLSLESSEVR
Trigger: CCTCACCTCAGAGCTCTCCAAGGAAAGGTTATGCACTGGCTCTCAGTGGCACCGTGGATAATTTCTCAGATTCAGGTCACAGTGAGATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp TCCCGTCTTACTGACATCGTCATATTGGCAAAGGCCGGCAGCTGGTaGATAAATTCCAGTAGTTGTTCGATGTCATCGTCAGTCCTGTCT +
Preference number: 5 (lower is better)
Translates to: SRLTDIVILAKAGSW*INSSSCSMSSSVLS
Trigger: AGACAGGACTGACGATGACATCGAACAACTACTGGAATTTATGCACCAGCTGCCGGCCTTTGCCAATATGACGATGTCAGTAAGACGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp CATGGTGGGCGAAACACCAAAGCTGTTTCCCATGCACAGAATTTCTaGTTTCCCATCCGGATATGTCACCTCCACGGAACCATTGAGAAT +
Preference number: 5 (lower is better)
Translates to: HGGRNTKAVSHAQNF*FPIRICHLHGTIEN
Trigger: ATTCTCAATGGTTCCGTGGAGGTGACATATCCGGATGGGAAAGCAGAAATTCTGTGCATGGGAAACAGCTTTGGTGTTTCGCCCACCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp TGTATTCTTTGTCCATGGTGGGCGAAACACCAAAGCTGTTTCCCATaGACAGAATTTCTGCTTTCCCATCCGGATATGTCACCTCCACGG +
Preference number: 5 (lower is better)
Translates to: CILCPWWAKHQSCFP*TEFLLSHPDMSPPR
Trigger: CCGTGGAGGTGACATATCCGGATGGGAAAGCAGAAATTCTGTGCATGGGAAACAGCTTTGGTGTTTCGCCCACCATGGACAAAGAATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp TTGCTCTCCACAATGCTGACAGAATGCCTCTGGCGCCGTTCATCATaGAGAGAGACTGGCACCGAGTCAAAAGAAGAATTGCTGACAATA +
Preference number: 5 (lower is better)
Translates to: LLSTMLTECLWRRSS*RETGTESKEELLTI
Trigger: TATTGTCAGCAATTCTTCTTTTGACTCGGTGCCAGTCTCTCTGCATGATGAACGGCGCCAGAGGCATTCTGTCAGCATTGTGGAGAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCAGATGTACCTGCTTTGTaGGTCAGCCTTGAAAACTCT +
Preference number: 5 (lower is better)
Translates to: VTILEFGMILRDVAGSSSDVPAL*VSLENS
Trigger: AGAGTTTTCAAGGCTGACCAACAAAGCAGGTACATC...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATCTGAAGGAGGGAGATTaGGCTCTCTCGCAGCAGCTC +
Preference number: 5 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDLKEGD*ALSQQL
Trigger: GAGCTGCTGCGAGAGAGCCAAATCTCCCTCCTTCAG...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACTCAGTAGGCTCAATGTaGCGGAAGAGTTCAAAGTTC +
Preference number: 5 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNSVGSM*RKSSKF
Trigger: GAACTTTGAACTCTTCCGCAACATTGAGCCTACTGA...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGCAGCCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGTCAAATTTCTTCAGGTaGGCACAGCTGGTTTTTGAT +
Preference number: 5 (lower is better)
Translates to: QQPLTSEYYSDWQPSLFRSNFFR*AQLVFD
Trigger: ATCAAAAACCAGCTGTGCCAACCTGAAGAAATTTGA...CCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGGCTGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGATGGAGTTAAAATTCTaGCATTCCCTGCAGTGCAAG +
Preference number: 5 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLMELKF*HSLQCK
Trigger: CTTGCACTGCAGGGAATGCAAGAATTTTAACTCCAT...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGGGACATTGCGGTACTTaGCCATGTTTCTGGAAGGAT +
Preference number: 5 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMGHCGT*PCFWKD
Trigger: ATCCTTCCAGAAACATGGCAAAGTACCGCAATGTCC...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCATATTGTATCTTCTGCTaGCTTCCTGTGACGCTCCAA +
Preference number: 5 (lower is better)
Translates to: VTILEFGMILRDVAGSSSYCIFC*LPVTLQ
Trigger: TTGGAGCGTCACAGGAAGCAAGCAGAAGATACAATA...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp ACAAGGGGAGGCTGTCTTGAAAGAGCAGTACAAACAGCTGGCATTCGCTCCAACTATTGTATCTTCTGCTaGCTTCCTGTGACGCTCCAA +
Preference number: 5 (lower is better)
Translates to: TRGGCLERAVQTAGIRSNYCIFC*LPVTLQ
Trigger: TTGGAGCGTCACAGGAAGCAAGCAGAAGATACAATA...GTTGGAGCGAATGCCAGCTGTTTGTACTGCTCTTTCAAGACAGCCTCCCCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGGTGCATAACCTTTCCTaGGAGAGCTCTGAGGTGAGG +
Preference number: 5 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPVHNLS*ESSEVR
Trigger: CCTCACCTCAGAGCTCTCCAAGGAAAGGTTATGCAC...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCAATCAGAAAACATCATTaGGTCCATATGGCCACCGGA +
Preference number: 5 (lower is better)
Translates to: VTILEFGMILRDVAGSSSIRKHH*VHMATG
Trigger: TCCGGTGGCCATATGGACCAAATGATGTTTTCTGAT...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTGGCCCGGGATTGGGCTaGTTCAAGACTCTCTCTACT +
Preference number: 5 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSGPGLG*FKTLST
Trigger: AGTAGAGAGAGTCTTGAACAAGCCCAATCCCGGGCC...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGCTTCCTGCAGAACGCTaGCCAAAACTGCTCCTTGGA +
Preference number: 5 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPLPAER*PKLLLG
Trigger: TCCAAGGAGCAGTTTTGGCAAGCGTTCTGCAGGAAG...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CAGGGGCTGCTGGGCTGTGCATTTCAAGCAACAAGTCTGCAAAGTGCCAGGGCACTTTCACCTTTCTGGTaGATCTTTCTAAATCTTCTC +
Preference number: 5 (lower is better)
Translates to: QGLLGCAFQATSLQSARALSPFW*IFLNLL
Trigger: GAGAAGATTTAGAAAGATCAACCAGAAAGGTGAAAG...TGCCCTGGCACTTTGCAGACTTGTTGCTTGAAATGCACAGCCCAGCAGCCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS TCA 90 bp GAATTTCTGCTTTCCCATCCGGATATGTCACCTCCACGGAACCATTaGGAATCACTGACCAGGAATCCAGCTCTTCTCCGTCGTTTAACA +
Preference number: 5 (lower is better)
Translates to: EFLLSHPDMSPPRNH*ESLTRNPALLRRLT
Trigger: TGTTAAACGACGGAGAAGAGCTGGATTCCTGGTCAGTGATTCTCAATGGTTCCGTGGAGGTGACATATCCGGATGGGAAAGCAGAAATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATACTGACATCGTCATATaGGCAAAGGCCGGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDTDIVI*AKAGSW
Trigger: CCAGCTGCCGGCCTTTGCCAATATGACGATGTCAGT...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAGATGTGCGTGCCAAGGCTCCAAGGCTTGGGACGTCTTCTTGTGCTCTCCTTCATGTTCTTTTCTACTaGGTTCAAAATACGGCAGTA +
Preference number: 5 (lower is better)
Translates to: SDVRAKAPRLGTSSCALLHVLFY*VQNTAV
Trigger: TACTGCCGTATTTTGAACCAAGTAGAAAAGAACATG...AAGGAGAGCACAAGAAGACGTCCCAAGCCTTGGAGCCTTGGCACGCACATCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGCTGAGGCTCGGGTCATaGAACCACTCCAATAACTTC +
Preference number: 5 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPLRLGS*NHSNNF
Trigger: GAAGTTATTGGAGTGGTTCAATGACCCGAGCCTCAG...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCATACGATGCTATCATCTaGAGACTGACCAATCCCAAT +
Preference number: 5 (lower is better)
Translates to: VTILEFGMILRDVAGSSSYDAII*RLTNPN
Trigger: ATTGGGATTGGTCAGTCTCAAGATGATAGCATCGTA...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGGGTTCGAGACCCCGGGTAGTTCAAAGGCTAGCTTTTCTCATCTTCCAAATGTCAGTAGGCTCAATGTaGCGGAAGAGTTCAAAGTTC +
Preference number: 5 (lower is better)
Translates to: VGSRPRVVQRLAFLIFQMSVGSM*RKSSKF
Trigger: GAACTTTGAACTCTTCCGCAACATTGAGCCTACTGA...CATTTGGAAGATGAGAAAAGCTAGCCTTTGAACTACCCGGGGTCTCGAACCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACATCCTCTTCAGCTGGTTaGTTTCCCGCAGGATTTCAG +
Preference number: 5 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTSSSAG*FPAGFQ
Trigger: CTGAAATCCTGCGGGAAACAAACCAGCTGAAGAGGA...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGCAGTGCAAGGCAATCTaGATGAAATGCTTAATGATC +
Preference number: 5 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLQCKAI*MKCLMI
Trigger: GATCATTAAGCATTTCATCAAGATTGCCTTGCACTG...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGATCTCCAGCTCCAGGTaGGACAGGTATTGCTTCACT +
Preference number: 5 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPISSSR*DRYCFT
Trigger: AGTGAAGCAATACCTGTCCAACCTGGAGCTGGAGAT...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGTGGGCAATGTGCTGGTaGCTGGTTCACACTGCAGTG +
Preference number: 5 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMWAMCW*LVHTAV
Trigger: CACTGCAGTGTGAACCAGCAACCAGCACATTGCCCA...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAGACTTGACAGGCTTTTaGTCTCCAGGATTCTTGGGC +
Preference number: 5 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTDLTGF*SPGFLG
Trigger: GCCCAAGAATCCTGGAGACAAAAAGCCTGTCAAGTC...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTGTGCATAACCTTTCCTaGGAGAGCTCTGAGGTGAGG +
Preference number: 5 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSVHNLS*ESSEVR
Trigger: CCTCACCTCAGAGCTCTCCAAGGAAAGGTTATGCAC...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CTTGGTGCGGCCAAACCCTGTCCGGCATATTTGGTTTTTCAGAAACCCAGGCTGGAGTCAAAAGAAGAATaGCTGACAATACTGGATCGT +
Preference number: 5 (lower is better)
Translates to: LGAAKPCPAYLVFQKPRLESKEE*LTILDR
Trigger: ACGATCCAGTATTGTCAGCAATTCTTCTTTTGACTC...CAGCCTGGGTTTCTGAAAAACCAAATATGCCGGACAGGGTTTGGCCGCACCAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 90 bp CTTCAGACAAGGACAGGATTTTCTTCAAAGCTTGTGGAGAGTTTATaGCAAAAGGAGGCAGATCCTTCACCGGCACCTTCTTTCGTGAAG +
Preference number: 5 (lower is better)
Translates to: LQTRTGFSSKLVESL*QKEADPSPAPSFVK
Trigger: CTTCACGAAAGAAGGTGCCGGTGAAGGATCTGCCTCCTTTTGGCATAAACTCTCCACAAGCTTTGAAGAAAATCCTGTCCTTGTCTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTCTTCCCGGGAAGGCTTaGTTAACGTCATCAGTCTTC +
Preference number: 5 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSLPGKA*LTSSVF
Trigger: GAAGACTGATGACGTTAACAAAGCCTTCCCGGGAAG...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCACAGTGCAAGGCAATCTaGATGAAATGCTTAATGATC +
Preference number: 5 (lower is better)
Translates to: VTILEFGMILRDVAGSSSQCKAI*MKCLMI
Trigger: GATCATTAAGCATTTCATCAAGATTGCCTTGCACTG...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGAACGTGAGGTCCTTCTaGATGACAGGGAACAGGGGA +
Preference number: 5 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMNVRSF*MTGNRG
Trigger: TCCCCTGTTCCCTGTCATCAAGAAGGACCTCACGTT...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GTGACGATCTTGGAATTTGGAATGATACTGCGTGACGTGGCAGGCAGCAGCTCAGAGTCAAAAGAAGAATaGCTGACAATACTGGATCGT +
Preference number: 5 (lower is better)
Translates to: VTILEFGMILRDVAGSSSESKEE*LTILDR
Trigger: ACGATCCAGTATTGTCAGCAATTCTTCTTTTGACTC...TGAGCTGCTGCCTGCCACGTCACGCAGTATCATTCCAAATTCCAAGATCGTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATCGGAGGCCCATATACTaGCAGCATCCCCTGAATAGT +
Preference number: 5 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDRRPIY*QHPLNS
Trigger: ACTATTCAGGGGATGCTGCAAGTATATGGGCCTCCG...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACATCAAACAGCAGACACTaGTTCATCTTCGTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTSNSRH*FIFVLL
Trigger: GAGGAGGACGAAGATGAACAAGTGTCTGCTGTTTGA...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp CCCCTCACATCTGAGTACTACTCGGATTGGCAGCCTTCACTTTTCCGGAGTCTGTGTGTCGATAATTGTTaGTCTTTCACCTTTCTGGTT +
Preference number: 5 (lower is better)
Translates to: PLTSEYYSDWQPSLFRSLCVDNC*SFTFLV
Trigger: AACCAGAAAGGTGAAAGACAAACAATTATCGACACA...CAGACTCCGGAAAAGTGAAGGCTGCCAATCCGAGTAGTACTCAGATGTGAGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS CCA 90 bp GGAAAGGAAAGTCCGGTATGTCAACAGGAAGTCTTCTATGAATGTTaGATCCACTACAGAATGCTCTTCCACCAAATGCATGGTCAGCCT +
Preference number: 5 (lower is better)
Translates to: GKESPVCQQEVFYEC*IHYRMLFHQMHGQP
Trigger: AGGCTGACCATGCATTTGGTGGAAGAGCATTCTGTAGTGGATCCAACATTCATAGAAGACTTCCTGTTGACATACCGGACTTTCCTTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTGCTTTGCTTTTCTTGTaGACCTTCTCGAGGCCTATC +
Preference number: 5 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSALLFL*TFSRPI
Trigger: GATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGC...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTTTGGCTTTGCTTTTCTaGTTGACCTTCTCGAGGCCT +
Preference number: 5 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSLALLF*LTFSRP
Trigger: AGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGCCAA...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATCTTCCTCCCACGGTGTaGGCTTTGCTTTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDLPPTV*ALLFLL
Trigger: CAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAG...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATGACTTGACAGGCTTTTaGTCTCCAGGATTCTTGGGC +
Preference number: 5 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDDLTGF*SPGFLG
Trigger: GCCCAAGAATCCTGGAGACAAAAAGCCTGTCAAGTC...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTTGCCAAAACTGCTCCTaGGAAGAAACATGGACTCCT +
Preference number: 5 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSCQNCS*EETWTP
Trigger: AGGAGTCCATGTTTCTTCCAAGGAGCAGTTTTGGCA...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACAAGTCCTAGTCTGTCTGTGGGAGGCTaGACGTTGGAAATATTCTTC +
Preference number: 5 (lower is better)
Translates to: LNNTILPHKAQTGHTSPSLSVGG*TLEIFF
Trigger: GAAGAATATTTCCAACGTCAAGCCTCCCACAGACAG...ACTAGGACTTGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTGGCAGCCTTCACTTTTCCGGAGTCTGTGCAAAAACAACACAAGAATAGACCGTACGATGCTATCATCTaGAGACTGACCAATCCCAAT +
Preference number: 5 (lower is better)
Translates to: LAAFTFPESVQKQHKNRPYDAII*RLTNPN
Trigger: ATTGGGATTGGTCAGTCTCAAGATGATAGCATCGTA...CGGTCTATTCTTGTGTTGTTTTTGCACAGACTCCGGAAAAGTGAAGGCTGCCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGCCAGTCCGTCTACTTTaGAGTCATTTCCCTCATGGA +
Preference number: 5 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMPVRLL*SHFPHG
Trigger: TCCATGAGGGAAATGACTCAAAAGTAGACGGACTGG...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCAATCTCCAGCTCCAGGTaGGACAGGTATTGCTTCACT +
Preference number: 5 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAISSSR*DRYCFT
Trigger: AGTGAAGCAATACCTGTCCAACCTGGAGCTGGAGAT...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGCCTTTCATGTATTCTTaGTCCATGGTGGGCGAAACA +
Preference number: 5 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMPFMYS*SMVGET
Trigger: TGTTTCGCCCACCATGGACAAAGAATACATGAAAGG...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGGATGTACCTGCTTTGTaGGTCAGCCTTGAAAACTCT +
Preference number: 5 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMDVPAL*VSLENS
Trigger: AGAGTTTTCAAGGCTGACCAACAAAGCAGGTACATC...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TTTAATGGAAAAATCCAAGATCAGCAGCCCCTCACATCTGAGTACTACTCGGATGATGTACCTGCTTTGTaGGTCAGCCTTGAAAACTCT +
Preference number: 5 (lower is better)
Translates to: FNGKIQDQQPLTSEYYSDDVPAL*VSLENS
Trigger: AGAGTTTTCAAGGCTGACCAACAAAGCAGGTACATC...ATCCGAGTAGTACTCAGATGTGAGGGGCTGCTGATCTTGGATTTTTCCATTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GGTTTGTCTTTCTATATGCACATGAGGTCCATAGCCTATAGAGTAAAACTGGCAATACCTTCCACTCAGTaGTATCCTGTCGGCAAGCTT +
Preference number: 5 (lower is better)
Translates to: GLSFYMHMRSIAYRVKLAIPSTQ*YPVGKL
Trigger: AAGCTTGCCGACAGGATACAACTGAGTGGAAGGTAT...TGCCAGTTTTACTCTATAGGCTATGGACCTCATGTGCATATAGAAAGACAAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp GACACACTCTTAAATAACACCATCCTGCCTCATAAGGCTCAGACAGGACACACACATGTTCTTTTCTACTaGGTTCAAAATACGGCAGTA +
Preference number: 5 (lower is better)
Translates to: DTLLNNTILPHKAQTGHTHVLFY*VQNTAV
Trigger: TACTGCCGTATTTTGAACCAAGTAGAAAAGAACATG...TGTGTGTCCTGTCTGAGCCTTATGAGGCAGGATGGTGTTATTTAAGAGTGTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGTCAAATTTCTTCAGGTaGGCACAGCTGGTTTTTGAT +
Preference number: 5 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMSNFFR*AQLVFD
Trigger: ATCAAAAACCAGCTGTGCCAACCTGAAGAAATTTGA...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS-3UTR CAA 90 bp TCAAGCAACAAGTCTGCAAAGTGCCAGGGCAATTTCTTCACAGTATTTCACATGCATGTTCTTTTCTACTaGGTTCAAAATACGGCAGTA +
Preference number: 5 (lower is better)
Translates to: SSNKSAKCQGNFFTVFHMHVLFY*VQNTAV
Trigger: TACTGCCGTATTTTGAACCAAGTAGAAAAGAACATG...CATGTGAAATACTGTGAAGAAATTGCCCTGGCACTTTGCAGACTTGTTGCTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp CTGCAGGCGGCGTCTGGCCCGGTGCCGGGGCCTCAGTaGGCCGTGCCACCATGCGGGACCGCTGCAGGGCCA +
Preference number: 6 (lower is better)
Translates to: LQAASGPVPGPQ*AVPPCGTAAGP
Trigger: TGGCCCTGCAGCGGTCCCGCATGGTGGCACGGCCCACTGAGGCCCCGGCACCGGGCCAGACGCCGCCTGCAG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp GGCGCGAGGCGTGGGTCTGCGTCGCTGGGCTTGTGCCACTGTGGCTaGCTGCCCGGCCGGCTGGCTGCGGCTGCAGGCGGCGTCTGGCCC +
Preference number: 6 (lower is better)
Translates to: GARRGSASLGLCHCG*LPGRLAAAAGGVWP
Trigger: GGGCCAGACGCCGCCTGCAGCCGCAGCCAGCCGGCCGGGCAGCAAGCCACAGTGGCACAAGCCCAGCGACGCAGACCCACGCCTCGCGCC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp CGGCGTCTGGCCCGGTGCCGGGGCCTCAGTGGGCCGTaGCACCATGCGGGACCGCTGCAGGGCCACGTTGTA +
Preference number: 6 (lower is better)
Translates to: RRLARCRGLSGP*HHAGPLQGHVV
Trigger: TACAACGTGGCCCTGCAGCGGTCCCGCATGGTGGCACGGCCCACTGAGGCCCCGGCACCGGGCCAGACGCCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp CGTGGGTCTGCGTCGCTGGGCTTGTGCCACTGTGGCTaGCTGCCCGGCCGGCTGGCTGCGGCTGCAGGCGGC +
Preference number: 6 (lower is better)
Translates to: RGSASLGLCHCG*LPGRLAAAAGG
Trigger: GCCGCCTGCAGCCGCAGCCAGCCGGCCGGGCAGCAAGCCACAGTGGCACAAGCCCAGCGACGCAGACCCACG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp GGTCTGCGTCGCTGGGCTTGTGCCACTGTGGCTTGCTaGCCGGCCGGCTGGCTGCGGCTGCAGGCGGCGTCT +
Preference number: 6 (lower is better)
Translates to: GLRRWACATVAC*PAGWLRLQAAS
Trigger: AGACGCCGCCTGCAGCCGCAGCCAGCCGGCCGGGCAGCAAGCCACAGTGGCACAAGCCCAGCGACGCAGACC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp TCTTCGTCCTCCTCCGCTCCTGCGAAGCCCTGCGGCTaGAAGGGCGCGAGGCGTGGGTCTGCGTCGCTGGGC +
Preference number: 6 (lower is better)
Translates to: SSSSSAPAKPCG*KGARRGSASLG
Trigger: GCCCAGCGACGCAGACCCACGCCTCGCGCCCTTCCAGCCGCAGGGCTTCGCAGGAGCGGAGGAGGACGAAGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp GAAGCCCTGCGGCTGGAAGGGCGCGAGGCGTGGGTCTaGGTCGCTGGGCTTGTGCCACTGTGGCTTGCTGCC +
Preference number: 6 (lower is better)
Translates to: EALRLEGREAWV*VAGLVPLWLAA
Trigger: GGCAGCAAGCCACAGTGGCACAAGCCCAGCGACGCAGACCCACGCCTCGCGCCCTTCCAGCCGCAGGGCTTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp ACCGCTGCAGGGCCACGTTGTAATCCGGGGGCTTCCTaGCCGGGTGGCAAGGCCCTTCTGGGAAATCGGCAA +
Preference number: 6 (lower is better)
Translates to: TAAGPRCNPGAS*PGGKALLGNRQ
Trigger: TTGCCGATTTCCCAGAAGGGCCTTGCCACCCGGCCAGGAAGCCCCCGGATTACAACGTGGCCCTGCAGCGGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp CAGCGGCTGCTGAGGCTGTACTTTCTGCTGGGGCCCTaGACGTGGAGCCACTGGGGAGGTCTCAGACTTGAC +
Preference number: 6 (lower is better)
Translates to: QRLLRLYFLLGP*TWSHWGGLRLD
Trigger: GTCAAGTCTGAGACCTCCCCAGTGGCTCCACGTGCAGGGCCCCAGCAGAAAGTACAGCCTCAGCAGCCGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp CACAGCGGGCACCTGCAGTCCCTGGCTGACTTTATGTaGAGGTTGTGGCTGTGCCAGCGGCTGCTGAGGCTG +
Preference number: 6 (lower is better)
Translates to: HSGHLQSLADFM*RLWLCQRLLRL
Trigger: CAGCCTCAGCAGCCGCTGGCACAGCCACAACCTCCACATAAAGTCAGCCAGGGACTGCAGGTGCCCGCTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp GGAGGCGGCTCCCGGTACCTGCCTTCCTTCCGTGCGATGAGTCCCTaGGTAGTGCTCGGCGTCACAGCTATGTGGGCAGGCATAGGGACA +
Preference number: 6 (lower is better)
Translates to: GGGSRYLPSFRAMSP*VVLGVTAMWAGIGT
Trigger: TGTCCCTATGCCTGCCCACATAGCTGTGACGCCGAGCACTACCAAGGGACTCATCGCACGGAAGGAAGGCAGGTACCGGGAGCCGCCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp GGACACAGCGGGCACCTGCAGTCCCTGGCTGACTTTATGTGGAGGTaGTGGCTGTGCCAGCGGCTGCTGAGGCTGTACTTTCTGCTGGGG +
Preference number: 6 (lower is better)
Translates to: GHSGHLQSLADFMWR*WLCQRLLRLYFLLG
Trigger: CCCCAGCAGAAAGTACAGCCTCAGCAGCCGCTGGCACAGCCACAACCTCCACATAAAGTCAGCCAGGGACTGCAGGTGCCCGCTGTGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp CTGTGTCGCCTTCTGAGTCTTCTCCCCAGTAGCCCGTaGAAGACGCCCAGCTGGCCCGGGATTGGGCTTGTT +
Preference number: 6 (lower is better)
Translates to: LCRLLSLLPSSP*KTPSWPGIGLV
Trigger: AACAAGCCCAATCCCGGGCCAGCTGGGCGTCTTCCACGGGCTACTGGGGAGAAGACTCAGAAGGCGACACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp TCCCGGTACCTGCCTTCCTTCCGTGCGATGAGTCCCTaGGTAGTGCTCGGCGTCACAGCTATGTGGGCAGGC +
Preference number: 6 (lower is better)
Translates to: SRYLPSFRAMSP*VVLGVTAMWAG
Trigger: GCCTGCCCACATAGCTGTGACGCCGAGCACTACCAAGGGACTCATCGCACGGAAGGAAGGCAGGTACCGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp GATAGAGGGACACAGCGGGCACCTGCAGTCCCTGGCTaGCTTTATGTGGAGGTTGTGGCTGTGCCAGCGGCT +
Preference number: 6 (lower is better)
Translates to: DRGTQRAPAVPG*LYVEVVAVPAA
Trigger: AGCCGCTGGCACAGCCACAACCTCCACATAAAGTCAGCCAGGGACTGCAGGTGCCCGCTGTGTCCCTCTATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp CCCACCCCTTCGCTTGATAGTGCCTGTGTCGCCTTCTaGGTCTTCTCCCCAGTAGCCCGTGGAAGACGCCCA +
Preference number: 6 (lower is better)
Translates to: PTPSLDSACVAF*VFSPVARGRRP
Trigger: TGGGCGTCTTCCACGGGCTACTGGGGAGAAGACTCAGAAGGCGACACAGGCACTATCAAGCGAAGGGGTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp ATCAGGGTCCGCCGCTCCATCCTGCCCACACCTAGGTaGCTCTCCACAATGCTGACAGAATGCCTCTGGCGC +
Preference number: 6 (lower is better)
Translates to: IRVRRSILPTPR*LSTMLTECLWR
Trigger: GCGCCAGAGGCATTCTGTCAGCATTGTGGAGAGCAACCTAGGTGTGGGCAGGATGGAGCGGCGGACCCTGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp TCAGGCTCCATCAGGGTCCGCCGCTCCATCCTGCCCACACCTAGGTaGCTCTCCACAATGCTGACAGAATGCCTCTGGCGCCGTTCATCA +
Preference number: 6 (lower is better)
Translates to: SGSIRVRRSILPTPR*LSTMLTECLWRRSS
Trigger: TGATGAACGGCGCCAGAGGCATTCTGTCAGCATTGTGGAGAGCAACCTAGGTGTGGGCAGGATGGAGCGGCGGACCCTGATGGAGCCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp GCTCCCACGACCGCTGTCAGCAGCATCGAGGGAAGCACGGTCCCCTaGGTCATGGGAAAGCTCCTCTGTGCTAGGAGAAGAGATGACCGT +
Preference number: 6 (lower is better)
Translates to: APTTAVSSIEGSTVP*VMGKLLCARRRDDR
Trigger: ACGGTCATCTCTTCTCCTAGCACAGAGGAGCTTTCCCATGACCAAGGGGACCGTGCTTCCCTCGATGCTGCTGACAGCGGTCGTGGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp GTAGTGCTCGGCGTCACAGCTATGTGGGCAGGCATAGGGACAGGTTaGGCTTCCTCTGTAGTCACGGGCACCATGCTGCTGCTCTCTGCC +
Preference number: 6 (lower is better)
Translates to: VVLGVTAMWAGIGTG*ASSVVTGTMLLLSA
Trigger: GGCAGAGAGCAGCAGCATGGTGCCCGTGACTACAGAGGAAGCCAAACCTGTCCCTATGCCTGCCCACATAGCTGTGACGCCGAGCACTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp ACTTTATGTGGAGGTTGTGGCTGTGCCAGCGGCTGCTaGGGCTGTACTTTCTGCTGGGGCCCTGCACGTGGA +
Preference number: 6 (lower is better)
Translates to: TLCGGCGCASGC*GCTFCWGPARG
Trigger: TCCACGTGCAGGGCCCCAGCAGAAAGTACAGCCTCAGCAGCCGCTGGCACAGCCACAACCTCCACATAAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp CTGTCTGAGCAACATCCAGCACTGTGGCGTTTGCACTaGCCTGACTCAGGGACCCCAGACTCCGCCACTTCT +
Preference number: 6 (lower is better)
Translates to: LSEQHPALWRLH*PDSGTPDSATS
Trigger: AGAAGTGGCGGAGTCTGGGGTCCCTGAGTCAGGGCAGTGCAAACGCCACAGTGCTGGATGTTGCTCAGACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp CAGTCCCTGGCTGACTTTATGTGGAGGTTGTGGCTGTaGCAGCGGCTGCTGAGGCTGTACTTTCTGCTGGGG +
Preference number: 6 (lower is better)
Translates to: QSLADFMWRLWL*QRLLRLYFLLG
Trigger: CCCCAGCAGAAAGTACAGCCTCAGCAGCCGCTGGCACAGCCACAACCTCCACATAAAGTCAGCCAGGGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp AAGCTCCTCTGTGCTAGGAGAAGAGATGACCGTCGCTaGGGCATACAGGCCTCGGCTTTCAGACACTGGGGC +
Preference number: 6 (lower is better)
Translates to: KLLCARRRDDRR*GIQASAFRHWG
Trigger: GCCCCAGTGTCTGAAAGCCGAGGCCTGTATGCCGCAGCGACGGTCATCTCTTCTCCTAGCACAGAGGAGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp TTCCTCTGTAGTCACGGGCACCATGCTGCTGCTCTCTaGCTCAGCGGAGACATCCTTCCCACCCCTTCGCTT +
Preference number: 6 (lower is better)
Translates to: FLCSHGHHAAAL*LSGDILPTPSL
Trigger: AAGCGAAGGGGTGGGAAGGATGTCTCCGCTGAGGCAGAGAGCAGCAGCATGGTGCCCGTGACTACAGAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp CTCATCATCGTCATCCTCAGAGTCAACCGCCGTCTCTaGCAGTCCACTCAGGTCCATGTCACCGGCCTCGCT +
Preference number: 6 (lower is better)
Translates to: LIIVILRVNRRL*QSTQVHVTGLA
Trigger: AGCGAGGCCGGTGACATGGACCTGAGTGGACTGCCAGAGACGGCGGTTGACTCTGAGGATGACGATGATGAG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp CCGCTGTCAGCAGCATCGAGGGAAGCACGGTCCCCTTaGTCATGGGAAAGCTCCTCTGTGCTAGGAGAAGAG +
Preference number: 6 (lower is better)
Translates to: PLSAASREARSP*SWESSSVLGEE
Trigger: CTCTTCTCCTAGCACAGAGGAGCTTTCCCATGACCAAGGGGACCGTGCTTCCCTCGATGCTGCTGACAGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp AGTCTTCTCCCCAGTAGCCCGTGGAAGACGCCCAGCTaGCCCGGGATTGGGCTTGTTCAAGACTCTCTCTAC +
Preference number: 6 (lower is better)
Translates to: SLLPSSPWKTPS*PGIGLVQDSLY
Trigger: GTAGAGAGAGTCTTGAACAAGCCCAATCCCGGGCCAGCTGGGCGTCTTCCACGGGCTACTGGGGAGAAGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp GGCGTCACAGCTATGTGGGCAGGCATAGGGACAGGTTaGGCTTCCTCTGTAGTCACGGGCACCATGCTGCTG +
Preference number: 6 (lower is better)
Translates to: GVTAMWAGIGTG*ASSVVTGTMLL
Trigger: CAGCAGCATGGTGCCCGTGACTACAGAGGAAGCCAAACCTGTCCCTATGCCTGCCCACATAGCTGTGACGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp GAACTACGGCGTACCCGCTTTTTATGCCCGCCTGTCTaGGCAACATCCAGCACTGTGGCGTTTGCACTGCCC +
Preference number: 6 (lower is better)
Translates to: ELRRTRFLCPPV*ATSSTVAFALP
Trigger: GGGCAGTGCAAACGCCACAGTGCTGGATGTTGCTCAGACAGGCGGGCATAAAAAGCGGGTACGCCGTAGTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp CACCTGCAGTCCCTGGCTGACTTTATGTGGAGGTTGTaGCTGTGCCAGCGGCTGCTGAGGCTGTACTTTCTG +
Preference number: 6 (lower is better)
Translates to: HLQSLADFMWRL*LCQRLLRLYFL
Trigger: CAGAAAGTACAGCCTCAGCAGCCGCTGGCACAGCCACAACCTCCACATAAAGTCAGCCAGGGACTGCAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp TCTGCCTCAGCGGAGACATCCTTCCCACCCCTTCGCTaGATAGTGCCTGTGTCGCCTTCTGAGTCTTCTCCC +
Preference number: 6 (lower is better)
Translates to: SASAETSFPPLR*IVPVSPSESSP
Trigger: GGGAGAAGACTCAGAAGGCGACACAGGCACTATCAAGCGAAGGGGTGGGAAGGATGTCTCCGCTGAGGCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp GCCCTGCACGTGGAGCCACTGGGGAGGTCTCAGACTTaGCAGGCTTTTTGTCTCCAGGATTCTTGGGCAATG +
Preference number: 6 (lower is better)
Translates to: ALHVEPLGRSQT*QAFCLQDSWAM
Trigger: CATTGCCCAAGAATCCTGGAGACAAAAAGCCTGTCAAGTCTGAGACCTCCCCAGTGGCTCCACGTGCAGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp CCATCCTGCCCACACCTAGGTTGCTCTCCACAATGCTaGCAGAATGCCTCTGGCGCCGTTCATCATGCAGAG +
Preference number: 6 (lower is better)
Translates to: PSCPHLGCSPQC*QNASGAVHHAE
Trigger: CTCTGCATGATGAACGGCGCCAGAGGCATTCTGTCAGCATTGTGGAGAGCAACCTAGGTGTGGGCAGGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp CTTTCAGACACTGGGGCATACGACCCTAAGCTGTATTaGTCAGGCTCCATCAGGGTCCGCCGCTCCATCCTG +
Preference number: 6 (lower is better)
Translates to: LSDTGAYDPKLY*SGSIRVRRSIL
Trigger: CAGGATGGAGCGGCGGACCCTGATGGAGCCTGATCAATACAGCTTAGGGTCGTATGCCCCAGTGTCTGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp CCAGTAGCCCGTGGAAGACGCCCAGCTGGCCCGGGATaGGGCTTGTTCAAGACTCTCTCTACTTTGATTCTG +
Preference number: 6 (lower is better)
Translates to: PVARGRRPAGPG*GLFKTLSTLIL
Trigger: CAGAATCAAAGTAGAGAGAGTCTTGAACAAGCCCAATCCCGGGCCAGCTGGGCGTCTTCCACGGGCTACTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp CCTGCACGTGGAGCCACTGGGGAGGTCTCAGACTTGACAGGCTTTTaGTCTCCAGGATTCTTGGGCAATGTGCTGGTTGCTGGTTCACAC +
Preference number: 6 (lower is better)
Translates to: PARGATGEVSDLTGF*SPGFLGNVLVAGSH
Trigger: GTGTGAACCAGCAACCAGCACATTGCCCAAGAATCCTGGAGACAAAAAGCCTGTCAAGTCTGAGACCTCCCCAGTGGCTCCACGTGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp TGCAAACACCATCACGGCACAGAGCTCCCGTCTTACTaGCATCGTCATATTGGCAAAGGCCGGCAGCTGGTG +
Preference number: 6 (lower is better)
Translates to: CKHHHGTELPSY*HRHIGKGRQLV
Trigger: CACCAGCTGCCGGCCTTTGCCAATATGACGATGTCAGTAAGACGGGAGCTCTGTGCCGTGATGGTGTTTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp GAGTCGGCGTTGTTTGATAACTCCCTCTGGTGTGACTaGGACCTCACAGAGGGAATACTGCTCTGGGGTGGC +
Preference number: 6 (lower is better)
Translates to: ESALFDNSLWCD*DLTEGILLWGG
Trigger: GCCACCCCAGAGCAGTATTCCCTCTGTGAGGTCTCAGTCACACCAGAGGGAGTTATCAAACAACGCCGACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp TCTGATCCCCGCGCTTCAAGCCTGCTTCAGTGGCTTTaGTACACGAGTCAACGCTGTCCACGAAGATGCCAA +
Preference number: 6 (lower is better)
Translates to: SDPRASSLLQWL*YTSQRCPRRCQ
Trigger: TTGGCATCTTCGTGGACAGCGTTGACTCGTGTAGCAAAGCCACTGAAGCAGGCTTGAAGCGCGGGGATCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp CCCTCTGGTGTGACTGAGACCTCACAGAGGGAATACTaGTCTGGGGTGGCAGTGACAGCAAACTCTCTGATG +
Preference number: 6 (lower is better)
Translates to: PSGVTETSQREY*SGVAVTANSLM
Trigger: CATCAGAGAGTTTGCTGTCACTGCCACCCCAGAGCAGTATTCCCTCTGTGAGGTCTCAGTCACACCAGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp ATGGTCAGCCTCTCTGAGGTGCCCTTGATGACGATGTaGCCCTTCCTTGTTCCAGTCCGATCAAGTTCTCGG +
Preference number: 6 (lower is better)
Translates to: MVSLSEVPLMTM*PFLVPVRSSSR
Trigger: CCGAGAACTTGATCGGACTGGAACAAGGAAGGGCCACATCGTCATCAAGGGCACCTCAGAGAGGCTGACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp GGCAAGTCAGGAGTAGTGCTGAAGTCCAGAATCCGGTaGTGTGACTGCAGCAAGTCAGGGTTACTGGAGGAC +
Preference number: 6 (lower is better)
Translates to: GKSGVVLKSRIR*CDCSKSGLLED
Trigger: GTCCTCCAGTAACCCTGACTTGCTGCAGTCACACCACCGGATTCTGGACTTCAGCACTACTCCTGACTTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp ATGAGTCCCTTGGTAGTGCTCGGCGTCACAGCTATGTaGGCAGGCATAGGGACAGGTTTGGCTTCCTCTGTA +
Preference number: 6 (lower is better)
Translates to: MSPLVVLGVTAM*AGIGTGLASSV
Trigger: TACAGAGGAAGCCAAACCTGTCCCTATGCCTGCCCACATAGCTGTGACGCCGAGCACTACCAAGGGACTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp GCAGTCCCTCACGATGTCCCTGCTCATCAGAGGGTCTaGTGCTCTCTCGATGTCTTCCTCATCATCGTCATC +
Preference number: 6 (lower is better)
Translates to: AVPHDVPAHQRV*CSLDVFLIIVI
Trigger: GATGACGATGATGAGGAAGACATCGAGAGAGCATCAGACCCTCTGATGAGCAGGGACATCGTGAGGGACTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp GTGCATAACCTTTCCTTGGAGAGCTCTGAGGTGAGGTaGGGGGCGATGAGAGCTGAGAGGACGCATTTGATA +
Preference number: 6 (lower is better)
Translates to: VHNLSLESSEVR*GAMRAERTHLI
Trigger: TATCAAATGCGTCCTCTCAGCTCTCATCGCCCCCCACCTCACCTCAGAGCTCTCCAAGGAAAGGTTATGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp GTCTTCTCCCCAGTAGCCCGTGGAAGACGCCCAGCTGGCCCGGGATaGGGCTTGTTCAAGACTCTCTCTACTTTGATTCTGTCTGTTATA +
Preference number: 6 (lower is better)
Translates to: VFSPVARGRRPAGPG*GLFKTLSTLILSVI
Trigger: TATAACAGACAGAATCAAAGTAGAGAGAGTCTTGAACAAGCCCAATCCCGGGCCAGCTGGGCGTCTTCCACGGGCTACTGGGGAGAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp AGAATGCTCTTCCACCAAATGCATGGTCAGCCTCTCTaGGGTGCCCTTGATGACGATGTGGCCCTTCCTTGT +
Preference number: 6 (lower is better)
Translates to: RMLFHQMHGQPL*GALDDDVALPC
Trigger: ACAAGGAAGGGCCACATCGTCATCAAGGGCACCTCAGAGAGGCTGACCATGCATTTGGTGGAAGAGCATTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp ATGGCCACCGGAGGCCCATATACTTGCAGCATCCCCTaGATAGTCAAAGTGAGTGTGCCCAAATGGCAGTGT +
Preference number: 6 (lower is better)
Translates to: MATGGPYTCSIP*IVKVSVPKWQC
Trigger: ACACTGCCATTTGGGCACACTCACTTTGACTATTCAGGGGATGCTGCAAGTATATGGGCCTCCGGTGGCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp CAGTTTTGTGAAGTCTGCAGGGAGTTTGGAGGACCATaGCTGCAGGCAGTTGGCATAGCAACGCACAAGGAA +
Preference number: 6 (lower is better)
Translates to: QFCEVCREFGGP*LQAVGIATHKE
Trigger: TTCCTTGTGCGTTGCTATGCCAACTGCCTGCAGCCATGGTCCTCCAAACTCCCTGCAGACTTCACAAAACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118340.7
CDS CAA 72 bp GCTTTCCCATCCGGATATGTCACCTCCACGGAACCATaGAGAATCACTGACCAGGAATCCAGCTCTTCTCCG +
Preference number: 6 (lower is better)
Translates to: AFPSGYVTSTEP*RITDQESSSSP
Trigger: CGGAGAAGAGCTGGATTCCTGGTCAGTGATTCTCAATGGTTCCGTGGAGGTGACATATCCGGATGGGAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp ACTACCCGCGTCACCTTATCCCTGAGGCTCGGGTCATaGAACCACTCCAATAACTTCTTGCCCACTTCCATC +
Preference number: 6 (lower is better)
Translates to: TTRVTLSLRLGS*NHSNNFLPTSI
Trigger: GATGGAAGTGGGCAAGAAGTTATTGGAGTGGTTCAATGACCCGAGCCTCAGGGATAAGGTGACGCGGGTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp ATGGCCTGGATGACCACTTCCTTTGCGGTGGTGTCCTaGCTGATCATGATGTACCTGCTTTGTTGGTCAGCC +
Preference number: 6 (lower is better)
Translates to: MAWMTTSFAVVS*LIMMYLLCWSA
Trigger: GGCTGACCAACAAAGCAGGTACATCATGATCAGCAAGGACACCACCGCAAAGGAAGTGGTCATCCAGGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp CACAGTAATACTACCCGCGTCACCTTATCCCTGAGGCTCGGGTCATaGAACCACTCCAATAACTTCTTGCCCACTTCCATCGGGCTGGAA +
Preference number: 6 (lower is better)
Translates to: HSNTTRVTLSLRLGS*NHSNNFLPTSIGLE
Trigger: TTCCAGCCCGATGGAAGTGGGCAAGAAGTTATTGGAGTGGTTCAATGACCCGAGCCTCAGGGATAAGGTGACGCGGGTAGTATTACTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp TTCACTTTCCGAGCCATCTGGGCATCTTCATACAGCTTTTTGGCATaGAGGAAGGAACTACGGCGTACCCGCTTTTTATGCCCGCCTGTC +
Preference number: 6 (lower is better)
Translates to: FTFRAIWASSYSFLA*RKELRRTRFLCPPV
Trigger: GACAGGCGGGCATAAAAAGCGGGTACGCCGTAGTTCCTTCCTCAATGCCAAAAAGCTGTATGAAGATGCCCAGATGGCTCGGAAAGTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp TCCCCAGTAGCCCGTGGAAGACGCCCAGCTGGCCCGGGATTGGGCTaGTTCAAGACTCTCTCTACTTTGATTCTGTCTGTTATATTTTGT +
Preference number: 6 (lower is better)
Translates to: SPVARGRRPAGPGLG*FKTLSTLILSVIFC
Trigger: ACAAAATATAACAGACAGAATCAAAGTAGAGAGAGTCTTGAACAAGCCCAATCCCGGGCCAGCTGGGCGTCTTCCACGGGCTACTGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp CCACTCAGTTGTATCCTGTCGGCAAGCTTGGAAAGCTaGTCTGGGAGTCGGCGTTGTTTGATAACTCCCTCT +
Preference number: 6 (lower is better)
Translates to: PLSCILSASLES*SGSRRCLITPS
Trigger: AGAGGGAGTTATCAAACAACGCCGACTCCCAGATCAGCTTTCCAAGCTTGCCGACAGGATACAACTGAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp TCCTCATCCATCTCCAGCTCCAGGTTGGACAGGTATTaGTTCACTTTCCGAGCCATCTGGGCATCTTCATAC +
Preference number: 6 (lower is better)
Translates to: SSSISSSRLDRY*FTFRAIWASSY
Trigger: GTATGAAGATGCCCAGATGGCTCGGAAAGTGAAGCAATACCTGTCCAACCTGGAGCTGGAGATGGATGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp GAGTCATTTCCCTCATGGAGAAACGTGAGGTCCTTCTaGATGACAGGGAACAGGGGAATGACAGGAGGCTGT +
Preference number: 6 (lower is better)
Translates to: ESFPSWRNVRSF*MTGNRGMTGGC
Trigger: ACAGCCTCCTGTCATTCCCCTGTTCCCTGTCATCAAGAAGGACCTCACGTTTCTCCATGAGGGAAATGACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp TCATTTGGTCCATATGGCCACCGGAGGCCCATATACTaGCAGCATCCCCTGAATAGTCAAAGTGAGTGTGCC +
Preference number: 6 (lower is better)
Translates to: SFGPYGHRRPIY*QHPLNSQSECA
Trigger: GGCACACTCACTTTGACTATTCAGGGGATGCTGCAAGTATATGGGCCTCCGGTGGCCATATGGACCAAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp TTCAGCTTGTTTCTTCCTCCCACGGTGTTGGCTTTGCTTTTCTTGTaGACCTTCTCGAGGCCTATCACCTGTTCTACGTCTACGGCGAGA +
Preference number: 6 (lower is better)
Translates to: FSLFLPPTVLALLFL*TFSRPITCSTSTAR
Trigger: TCTCGCCGTAGACGTAGAACAGGTGATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAGAAACAAGCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp TTCTTCAGCTTGTTTCTTCCTCCCACGGTGTTGGCTTTGCTTTTCTaGTTGACCTTCTCGAGGCCTATCACCTGTTCTACGTCTACGGCG +
Preference number: 6 (lower is better)
Translates to: FFSLFLPPTVLALLF*LTFSRPITCSTSTA
Trigger: CGCCGTAGACGTAGAACAGGTGATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAGAAACAAGCTGAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp GGATCAAACAGGTCTTGCAGGTCCTGGAACAGCTTTTCATATTTATaGGGAAGCTTTTCCCAGGTGGTTCGTAGTCTTGCCACCGGTGCC +
Preference number: 6 (lower is better)
Translates to: GSNRSCRSWNSFSYL*GSFSQVVRSLATGA
Trigger: GGCACCGGTGGCAAGACTACGAACCACCTGGGAAAAGCTTCCCAATAAATATGAAAAGCTGTTCCAGGACCTGCAAGACCTGTTTGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp GAGCCATCTGGGCATCTTCATACAGCTTTTTGGCATTaGGGAAGGAACTACGGCGTACCCGCTTTTTATGCC +
Preference number: 6 (lower is better)
Translates to: EPSGHLHTAFWH*GRNYGVPAFYA
Trigger: GGCATAAAAAGCGGGTACGCCGTAGTTCCTTCCTCAATGCCAAAAAGCTGTATGAAGATGCCCAGATGGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp TGCCCAAATGGCAGTGTTTCCCAGCTTCTCTGGTGCTaGATGGTCTGTATGTTGTCATGGGAACCACTTGAG +
Preference number: 6 (lower is better)
Translates to: CPNGSVSQLLWC*MVCMLSWEPLE
Trigger: CTCAAGTGGTTCCCATGACAACATACAGACCATTCAGCACCAGAGAAGCTGGGAAACACTGCCATTTGGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp CGAAACACCAAAGCTGTTTCCCATGCACAGAATTTCTaGTTTCCCATCCGGATATGTCACCTCCACGGAACC +
Preference number: 6 (lower is better)
Translates to: RNTKAVSHAQNF*FPIRICHLHGT
Trigger: GGTTCCGTGGAGGTGACATATCCGGATGGGAAAGCAGAAATTCTGTGCATGGGAAACAGCTTTGGTGTTTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp AATGTTGGATCCACTACAGAATGCTCTTCCACCAAATaGATGGTCAGCCTCTCTGAGGTGCCCTTGATGACG +
Preference number: 6 (lower is better)
Translates to: NVGSTTECSSTK*MVSLSEVPLMT
Trigger: CGTCATCAAGGGCACCTCAGAGAGGCTGACCATGCATTTGGTGGAAGAGCATTCTGTAGTGGATCCAACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp ACAATGCTGACAGAATGCCTCTGGCGCCGTTCATCATaGAGAGAGACTGGCACCGAGTCAAAAGAAGAATTG +
Preference number: 6 (lower is better)
Translates to: TMLTECLWRRSS*RETGTESKEEL
Trigger: CAATTCTTCTTTTGACTCGGTGCCAGTCTCTCTGCATGATGAACGGCGCCAGAGGCATTCTGTCAGCATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp GTGCAGGCTGTCAGTGAGGTGCAGTTTTGTGAAGTCTaGAGGGAGCTGAGATTTAGTGCATTCCGTATGGTA +
Preference number: 6 (lower is better)
Translates to: VQAVSEVQFCEV*RELRFSAFRMV
Trigger: TACCATACGGAATGCACTAAATCTCAGCTCCCTGCAGACTTCACAAAACTGCACCTCACTGACAGCCTGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195708.2
CDS CAA 72 bp CGAGCCATCTGGGCATCTTCATACAGCTTTTTGGCATaGAGGAAGGAACTACGGCGTACCCGCTTTTTATGC +
Preference number: 6 (lower is better)
Translates to: RAIWASSYSFLA*RKELRRTRFLC
Trigger: GCATAAAAAGCGGGTACGCCGTAGTTCCTTCCTCAATGCCAAAAAGCTGTATGAAGATGCCCAGATGGCTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp ACTTTCCGAGCCATCTGGGCATCTTCATACAGCTTTTaGGCATTGAGGAAGGAACTACGGCGTACCCGCTTT +
Preference number: 6 (lower is better)
Translates to: TFRAIWASSYSF*ALRKELRRTRF
Trigger: AAAGCGGGTACGCCGTAGTTCCTTCCTCAATGCCAAAAAGCTGTATGAAGATGCCCAGATGGCTCGGAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp TATTGCTTCACTTTCCGAGCCATCTGGGCATCTTCATACAGCTTTTaGGCATTGAGGAAGGAACTACGGCGTACCCGCTTTTTATGCCCG +
Preference number: 6 (lower is better)
Translates to: YCFTFRAIWASSYSF*ALRKELRRTRFLCP
Trigger: CGGGCATAAAAAGCGGGTACGCCGTAGTTCCTTCCTCAATGCCAAAAAGCTGTATGAAGATGCCCAGATGGCTCGGAAAGTGAAGCAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp CAGAAAACATCATTTGGTCCATATGGCCACCGGAGGCCCATATACTaGCAGCATCCCCTGAATAGTCAAAGTGAGTGTGCCCAAATGGCA +
Preference number: 6 (lower is better)
Translates to: QKTSFGPYGHRRPIY*QHPLNSQSECAQMA
Trigger: TGCCATTTGGGCACACTCACTTTGACTATTCAGGGGATGCTGCAAGTATATGGGCCTCCGGTGGCCATATGGACCAAATGATGTTTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp TTCTTCCTCCCACGGTGTTGGCTTTGCTTTTCTTGTTaGCCTTCTCGAGGCCTATCACCTGTTCTACGTCTA +
Preference number: 6 (lower is better)
Translates to: FFLPRCWLCFSC*PSRGLSPVLRL
Trigger: TAGACGTAGAACAGGTGATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp CTGCTTTGTTGGTCAGCCTTGAAAACTCTCAGTACCTaGTCTGGCAAGTCAGGAGTAGTGCTGAAGTCCAGA +
Preference number: 6 (lower is better)
Translates to: LLCWSALKTLST*SGKSGVVLKSR
Trigger: TCTGGACTTCAGCACTACTCCTGACTTGCCAGATCAGGTACTGAGAGTTTTCAAGGCTGACCAACAAAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp TGTGACCTGAATCTGAGAAATTATCCACGGTGCCACTaGGAGCCAGTGCATAACCTTTCCTTGGAGAGCTCT +
Preference number: 6 (lower is better)
Translates to: CDLNLRNYPRCH*EPVHNLSLESS
Trigger: AGAGCTCTCCAAGGAAAGGTTATGCACTGGCTCTCAGTGGCACCGTGGATAATTTCTCAGATTCAGGTCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp CAGCTGGGATGTGCTTGGTCTGCCTCAGTCCTACGATaGTATCATCTTGAGACTGACCAATCCCAATATCAT +
Preference number: 6 (lower is better)
Translates to: QLGCAWSASVLR*YHLETDQSQYH
Trigger: ATGATATTGGGATTGGTCAGTCTCAAGATGATAGCATCGTAGGACTGAGGCAGACCAAGCACATCCCAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp ACCACTCCAATAACTTCTTGCCCACTTCCATCGGGCTaGAAAGGAAAGTCCGGTATGTCAACAGGAAGTCTT +
Preference number: 6 (lower is better)
Translates to: TTPITSCPLPSG*KGKSGMSTGSL
Trigger: AAGACTTCCTGTTGACATACCGGACTTTCCTTTCCAGCCCGATGGAAGTGGGCAAGAAGTTATTGGAGTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp AGAATGCCTCTGGCGCCGTTCATCATGCAGAGAGACTaGCACCGAGTCAAAAGAAGAATTGCTGACAATACT +
Preference number: 6 (lower is better)
Translates to: RMPLAPFIMQRD*HRVKRRIADNT
Trigger: AGTATTGTCAGCAATTCTTCTTTTGACTCGGTGCCAGTCTCTCTGCATGATGAACGGCGCCAGAGGCATTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp CAAATGGCAGTGTTTCCCAGCTTCTCTGGTGCTGAATaGTCTGTATGTTGTCATGGGAACCACTTGAGCATG +
Preference number: 6 (lower is better)
Translates to: QMAVFPSFSGAE*SVCCHGNHLSM
Trigger: CATGCTCAAGTGGTTCCCATGACAACATACAGACCATTCAGCACCAGAGAAGCTGGGAAACACTGCCATTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp TTTCTTCCTCCCACGGTGTTGGCTTTGCTTTTCTTGTaGACCTTCTCGAGGCCTATCACCTGTTCTACGTCT +
Preference number: 6 (lower is better)
Translates to: FLPPTVLALLFL*TFSRPITCSTS
Trigger: AGACGTAGAACAGGTGATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp TTGTTTCTTCCTCCCACGGTGTTGGCTTTGCTTTTCTaGTTGACCTTCTCGAGGCCTATCACCTGTTCTACG +
Preference number: 6 (lower is better)
Translates to: LFLPPTVLALLF*LTFSRPITCST
Trigger: CGTAGAACAGGTGATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAGAAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp TTCTTCAGCTTGTTTCTTCCTCCCACGGTGTTGGCTTaGCTTTTCTTGTTGACCTTCTCGAGGCCTATCACC +
Preference number: 6 (lower is better)
Translates to: FFSLFLPPTVLA*LFLLTFSRPIT
Trigger: GGTGATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAGAAACAAGCTGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp AGAATTTCTGCTTTCCCATCCGGATATGTCACCTCCACGGAACCATaGAGAATCACTGACCAGGAATCCAGCTCTTCTCCGTCGTTTAAC +
Preference number: 6 (lower is better)
Translates to: RISAFPSGYVTSTEP*RITDQESSSSPSFN
Trigger: GTTAAACGACGGAGAAGAGCTGGATTCCTGGTCAGTGATTCTCAATGGTTCCGTGGAGGTGACATATCCGGATGGGAAAGCAGAAATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp TGGCAGTCATCCACCTTAGTCCTCATGACTCCTTTCATGTATTCTTaGTCCATGGTGGGCGAAACACCAAAGCTGTTTCCCATGCACAGA +
Preference number: 6 (lower is better)
Translates to: WQSSTLVLMTPFMYS*SMVGETPKLFPMHR
Trigger: TCTGTGCATGGGAAACAGCTTTGGTGTTTCGCCCACCATGGACAAAGAATACATGAAAGGAGTCATGAGGACTAAGGTGGATGACTGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp TCTACTTTTGAGTCATTTCCCTCATGGAGAAACGTGAGGTCCTTCTaGATGACAGGGAACAGGGGAATGACAGGAGGCTGTAAGTTCTGG +
Preference number: 6 (lower is better)
Translates to: STFESFPSWRNVRSF*MTGNRGMTGGCKFW
Trigger: CCAGAACTTACAGCCTCCTGTCATTCCCCTGTTCCCTGTCATCAAGAAGGACCTCACGTTTCTCCATGAGGGAAATGACTCAAAAGTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp TCGAGTATTTTCTTCAGCTTGTTTCTTCCTCCCACGGTGTTGGCTTaGCTTTTCTTGTTGACCTTCTCGAGGCCTATCACCTGTTCTACG +
Preference number: 6 (lower is better)
Translates to: SSIFFSLFLPPTVLA*LFLLTFSRPITCST
Trigger: CGTAGAACAGGTGATAGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAGAAACAAGCTGAAGAAAATACTCGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp ACTGACATCGTCATATTGGCAAAGGCCGGCAGCTGGTaGATAAATTCCAGTAGTTGTTCGATGTCATCGTCA +
Preference number: 6 (lower is better)
Translates to: TDIVILAKAGSW*INSSSCSMSSS
Trigger: TGACGATGACATCGAACAACTACTGGAATTTATGCACCAGCTGCCGGCCTTTGCCAATATGACGATGTCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp CTTACTGACATCGTCATATTGGCAAAGGCCGGCAGCTaGTGCATAAATTCCAGTAGTTGTTCGATGTCATCG +
Preference number: 6 (lower is better)
Translates to: LTDIVILAKAGS*CINSSSCSMSS
Trigger: CGATGACATCGAACAACTACTGGAATTTATGCACCAGCTGCCGGCCTTTGCCAATATGACGATGTCAGTAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp AGGTTGGACAGGTATTGCTTCACTTTCCGAGCCATCTaGGCATCTTCATACAGCTTTTTGGCATTGAGGAAG +
Preference number: 6 (lower is better)
Translates to: RLDRYCFTFRAI*ASSYSFLALRK
Trigger: CTTCCTCAATGCCAAAAAGCTGTATGAAGATGCCCAGATGGCTCGGAAAGTGAAGCAATACCTGTCCAACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp TCCACCTTAGTCCTCATGACTCCTTTCATGTATTCTTaGTCCATGGTGGGCGAAACACCAAAGCTGTTTCCC +
Preference number: 6 (lower is better)
Translates to: STLVLMTPFMYS*SMVGETPKLFP
Trigger: GGGAAACAGCTTTGGTGTTTCGCCCACCATGGACAAAGAATACATGAAAGGAGTCATGAGGACTAAGGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp AGGTCTTGCAGGTCCTGGAACAGCTTTTCATATTTATaGGGAAGCTTTTCCCAGGTGGTTCGTAGTCTTGCC +
Preference number: 6 (lower is better)
Translates to: RSCRSWNSFSYL*GSFSQVVRSLA
Trigger: GGCAAGACTACGAACCACCTGGGAAAAGCTTCCCAATAAATATGAAAAGCTGTTCCAGGACCTGCAAGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp AGTATTTTCTTCAGCTTGTTTCTTCCTCCCACGGTGTaGGCTTTGCTTTTCTTGTTGACCTTCTCGAGGCCT +
Preference number: 6 (lower is better)
Translates to: SIFFSLFLPPTV*ALLFLLTFSRP
Trigger: AGGCCTCGAGAAGGTCAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAGAAACAAGCTGAAGAAAATACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp CGCCCAGCTGGCCCGGGATTGGGCTTGTTCAAGACTCTCTCTACTTaGATTCTGTCTGTTATATTTTGTGCTATGATCAGAAAACATCAT +
Preference number: 6 (lower is better)
Translates to: RPAGPGLGLFKTLST*ILSVIFCAMIRKHH
Trigger: ATGATGTTTTCTGATCATAGCACAAAATATAACAGACAGAATCAAAGTAGAGAGAGTCTTGAACAAGCCCAATCCCGGGCCAGCTGGGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp GTGCTTGGTCTGCCTCAGTCCTACGATGCTATCATCTaGAGACTGACCAATCCCAATATCATTGTATGGTTT +
Preference number: 6 (lower is better)
Translates to: VLGLPQSYDAII*RLTNPNIIVWF
Trigger: AAACCATACAATGATATTGGGATTGGTCAGTCTCAAGATGATAGCATCGTAGGACTGAGGCAGACCAAGCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp TTGATTCTGTCTGTTATATTTTGTGCTATGATCAGAAAACATCATTaGGTCCATATGGCCACCGGAGGCCCATATACTTGCAGCATCCCC +
Preference number: 6 (lower is better)
Translates to: LILSVIFCAMIRKHH*VHMATGGPYTCSIP
Trigger: GGGGATGCTGCAAGTATATGGGCCTCCGGTGGCCATATGGACCAAATGATGTTTTCTGATCATAGCACAAAATATAACAGACAGAATCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp AGTCCGGTATGTCAACAGGAAGTCTTCTATGAATGTTaGATCCACTACAGAATGCTCTTCCACCAAATGCAT +
Preference number: 6 (lower is better)
Translates to: SPVCQQEVFYEC*IHYRMLFHQMH
Trigger: ATGCATTTGGTGGAAGAGCATTCTGTAGTGGATCCAACATTCATAGAAGACTTCCTGTTGACATACCGGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp GGCCCGGGATTGGGCTTGTTCAAGACTCTCTCTACTTaGATTCTGTCTGTTATATTTTGTGCTATGATCAGA +
Preference number: 6 (lower is better)
Translates to: GPGLGLFKTLST*ILSVIFCAMIR
Trigger: TCTGATCATAGCACAAAATATAACAGACAGAATCAAAGTAGAGAGAGTCTTGAACAAGCCCAATCCCGGGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS TCA 72 bp TCCCAATATCATTGTATGGTTTCTGAGGTAAGATGCTaGTCCGGGTCTTGTCGAGTATTTTCTTCAGCTTGT +
Preference number: 6 (lower is better)
Translates to: SQYHCMVSEVRC*SGSCRVFSSAC
Trigger: ACAAGCTGAAGAAAATACTCGACAAGACCCGGATCAGCATCTTACCTCAGAAACCATACAATGATATTGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS GCA 72 bp TTGCATTCCCTGCAGTGCAAGGCAATCTTGATGAAATaGTTAATGATCTTCATCCTCTTCAGCTGGTTTGTT +
Preference number: 6 (lower is better)
Translates to: LHSLQCKAILMK*LMIFILFSWFV
Trigger: AACAAACCAGCTGAAGAGGATGAAGATCATTAAGCATTTCATCAAGATTGCCTTGCACTGCAGGGAATGCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CCA 72 bp ATGTTTCTGGAAGGATCAAACAGGTCTTGCAGGTCCTaGAACAGCTTTTCATATTTATTGGGAAGCTTTTCC +
Preference number: 6 (lower is better)
Translates to: MFLEGSNRSCRS*NSFSYLLGSFS
Trigger: GGAAAAGCTTCCCAATAAATATGAAAAGCTGTTCCAGGACCTGCAAGACCTGTTTGATCCTTCCAGAAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp TCTGTTATATTTTGTGCTATGATCAGAAAACATCATTaGGTCCATATGGCCACCGGAGGCCCATATACTTGC +
Preference number: 6 (lower is better)
Translates to: SVIFCAMIRKHH*VHMATGGPYTC
Trigger: GCAAGTATATGGGCCTCCGGTGGCCATATGGACCAAATGATGTTTTCTGATCATAGCACAAAATATAACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp GATTTGAGTTTAAATAAATCATCTATGTATTCAGTAGGCTCAATGTaGCGGAAGAGTTCAAAGTTCCTCATGGAGAGCTGCGTGGCAACC +
Preference number: 6 (lower is better)
Translates to: DLSLNKSSMYSVGSM*RKSSKFLMESCVAT
Trigger: GGTTGCCACGCAGCTCTCCATGAGGAACTTTGAACTCTTCCGCAACATTGAGCCTACTGAATACATAGATGATTTATTTAAACTCAAATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 90 bp GGGCTTGTTCAAGACTCTCTCTACTTTGATTCTGTCTGTTATATTTaGTGCTATGATCAGAAAACATCATTTGGTCCATATGGCCACCGG +
Preference number: 6 (lower is better)
Translates to: GLVQDSLYFDSVCYI*CYDQKTSFGPYGHR
Trigger: CCGGTGGCCATATGGACCAAATGATGTTTTCTGATCATAGCACAAAATATAACAGACAGAATCAAAGTAGAGAGAGTCTTGAACAAGCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2
CDS CAA 72 bp TTAAATAAATCATCTATGTATTCAGTAGGCTCAATGTaGCGGAAGAGTTCAAAGTTCCTCATGGAGAGCTGC +
Preference number: 6 (lower is better)
Translates to: LNKSSMYSVGSM*RKSSKFLMESC
Trigger: GCAGCTCTCCATGAGGAACTTTGAACTCTTCCGCAACATTGAGCCTACTGAATACATAGATGATTTATTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118100.8
ENSMUST00000118340.7
ENSMUST00000195708.2