Pregenerated sensors for RAP2C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050029Ensembl transcript IDs: ENSMUST00000053593.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCACATTTGCAAAAATAAAACACAGCCAGCCAGAGGCTCGGCGCTaGTTTCCCTCCTGTTACACAGATCTGTCTCTACTACGAACATGC | + |
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Preference number: 1 (lower is better) Translates to: STFAKIKHSQPEARR*FPSCYTDLSLLRTC Trigger: GCATGTTCGTAGTAGAGACAGATCTGTGTAACAGGAGGGAAAGCAGCGCCGAGCCTCTGGCTGGCTGTGTTTTATTTTTGCAAATGTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR GCA 90 bp | TTGAGGGCCAAAGACCTTATGCACTTCATTAGATGTATGGCAACATaGTGTGATAGAGACAGGTTTACCAAGGCTCAGTTCTGCAACCCA | + |
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Preference number: 1 (lower is better) Translates to: LRAKDLMHFIRCMAT*CDRDRFTKAQFCNP Trigger: TGGGTTGCAGAACTGAGCCTTGGTAAACCTGTCTCTATCACAGCATGTTGCCATACATCTAATGAAGTGCATAAGGTCTTTGGCCCTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR TCA 90 bp | TGTATGGTAAACGTGCTAAGCATTACTGTGAAGGTCCGTGGATCTTaGGGGCCAAAGACCTTATGCACTTCATTAGATGTATGGCAACAT | + |
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Preference number: 1 (lower is better) Translates to: CMVNVLSITVKVRGS*GPKTLCTSLDVWQH Trigger: ATGTTGCCATACATCTAATGAAGTGCATAAGGTCTTTGGCCCTCAAGATCCACGGACCTTCACAGTAATGCTTAGCACGTTTACCATACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR TCA 90 bp | ACCTGCGTTATTGGTAAAATGTTCAAGTATTCAGACAAAATGTGCTaGTTAGGTAAACAACATGGAAGGCAATGGCTATTAGAAAGCACA | + |
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Preference number: 1 (lower is better) Translates to: TCVIGKMFKYSDKMC*LGKQHGRQWLLEST Trigger: TGTGCTTTCTAATAGCCATTGCCTTCCATGTTGTTTACCTAATCAGCACATTTTGTCTGAATACTTGAACATTTTACCAATAACGCAGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR TCA 90 bp | CATCATAATAGGTTACATGACTTTATTTGCAGAGCCCTACTGCAGTaGTTTGAACAACTCCTAAACAGATGCCATAATAAAGACAAGACA | + |
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Preference number: 1 (lower is better) Translates to: HHNRLHDFICRALLQ*FEQLLNRCHNKDKT Trigger: TGTCTTGTCTTTATTATGGCATCTGTTTAGGAGTTGTTCAAATCACTGCAGTAGGGCTCTGCAAATAAAGTCATGTAACCTATTATGATG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR-3UTR GCA 90 bp | AATGAACGCTGTGATAGAGAGCGAGGTGACAGAAGGCGAAGAAGGGAAGGACAGGGGCCAAAGACCTTATaGACTTCATTAGATGTATGG | + |
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Preference number: 2 (lower is better) Translates to: NERCDRERGDRRRRREGQGPKTL*TSLDVW Trigger: CCATACATCTAATGAAGTGCATAAGGTCTTTGGCCC...CTGTCCTTCCCTTCTTCGCCTTCTGTCACCTCGCTCTCTATCACAGCGTTCATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR-3UTR GCA 90 bp | TGGATCTTGAGGGCCAAAGACCTTATGCACTTCATTAGATGTATGGCAACATGCACCAAGGCTCAGTTCTaGAACCCAGGTTGTAAAGTT | + |
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Preference number: 2 (lower is better) Translates to: WILRAKDLMHFIRCMATCTKAQF*NPGCKV Trigger: AACTTTACAACCTGGGTTGCAGAACTGAGCCTTGGT...GCATGTTGCCATACATCTAATGAAGTGCATAAGGTCTTTGGCCCTCAAGATCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR CAA 90 bp | ATGTATGGTAAACGTGCTAAGCATTACTGTGAAGGTCCGTGGATCTaGAGGGCCAAAGACCTTATGCACTTCATTAGATGTATGGCAACA | + |
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Preference number: 2 (lower is better) Translates to: MYGKRAKHYCEGPWI*RAKDLMHFIRCMAT Trigger: TGTTGCCATACATCTAATGAAGTGCATAAGGTCTTTGGCCCTCAAGATCCACGGACCTTCACAGTAATGCTTAGCACGTTTACCATACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR-3UTR GCA 90 bp | TTTTACATGTGCAGAAGTCTACCAGATGTCAATGACAAGCCTGATGGGCAAAGCCCAAAGCAGCATCTGTaGAAATTTCCTCTGAGTTTG | + |
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Preference number: 2 (lower is better) Translates to: FYMCRSLPDVNDKPDGQSPKQHL*KFPLSL Trigger: CAAACTCAGAGGAAATTTGCACAGATGCTGCTTTGG...GCTTTGCCCATCAGGCTTGTCATTGACATCTGGTAGACTTCTGCACATGTAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR-3UTR TCA 90 bp | GCTACTCTGAAGGAGCGTTGGGTTTTAAAGTGCAAACTCAAATTAAGTATTTATAAGGTCCGTGGATCTTaGGGGCCAAAGACCTTATGC | + |
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Preference number: 2 (lower is better) Translates to: ATLKERWVLKCKLKLSIYKVRGS*GPKTLC Trigger: GCATAAGGTCTTTGGCCCTCAAGATCCACGGACCTT...ATAAATACTTAATTTGAGTTTGCACTTTAAAACCCAACGCTCCTTCAGAGTAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR-3UTR TCA 90 bp | GCTACTCTGAAGGAGCGTTGGGTTTTAAAGTGCAAACTCAAATTAAGTATTTATAACACGAGCTCGCTTTaGGGGAATCTGATCAGGAAT | + |
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Preference number: 2 (lower is better) Translates to: ATLKERWVLKCKLKLSIYNTSSL*GNLIRN Trigger: ATTCCTGATCAGATTCCCTCAAAGCGAGCTCGTGTT...ATAAATACTTAATTTGAGTTTGCACTTTAAAACCCAACGCTCCTTCAGAGTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR-3UTR CCA 90 bp | GCTACTCTGAAGGAGCGTTGGGTTTTAAAGTGCAAACTCAAATTAAGTATTTATGTAATCTGCTCGGTATaGCCATGGCTGAGGTTTTCT | + |
|
Preference number: 2 (lower is better) Translates to: ATLKERWVLKCKLKLSIYVICSV*PWLRFS Trigger: AGAAAACCTCAGCCATGGCCATACCGAGCAGATTAC...ATAAATACTTAATTTGAGTTTGCACTTTAAAACCCAACGCTCCTTCAGAGTAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR-3UTR TCA 90 bp | GCTACTCTGAAGGAGCGTTGGGTTTTAAAGTGCAAACTCAAATTAAGTATTTATTACCAAAACTGCACTTaGAGAAAAGGGATAGTCCAT | + |
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Preference number: 2 (lower is better) Translates to: ATLKERWVLKCKLKLSIYYQNCT*RKGIVH Trigger: ATGGACTATCCCTTTTCTTCAAGTGCAGTTTTGGTA...ATAAATACTTAATTTGAGTTTGCACTTTAAAACCCAACGCTCCTTCAGAGTAGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR-3UTR CCA 90 bp | GCTACTCTGAAGGAGCGTTGGGTTTTAAAGTGCAAACTCAAATTAAGTATTTATACTTCATTAGATGTATaGCAACATGCTGTGATAGAG | + |
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Preference number: 2 (lower is better) Translates to: ATLKERWVLKCKLKLSIYTSLDV*QHAVIE Trigger: CTCTATCACAGCATGTTGCCATACATCTAATGAAGT...ATAAATACTTAATTTGAGTTTGCACTTTAAAACCCAACGCTCCTTCAGAGTAGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR-3UTR CAA 90 bp | AATGAACGCTGTGATAGAGAGCGAGGTGACAGAAGGCGAAGAAGGGAAGGACAGGAAGGTCCGTGGATCTaGAGGGCCAAAGACCTTATG | + |
|
Preference number: 3 (lower is better) Translates to: NERCDRERGDRRRRREGQEGPWI*RAKDLM Trigger: CATAAGGTCTTTGGCCCTCAAGATCCACGGACCTTC...CTGTCCTTCCCTTCTTCGCCTTCTGTCACCTCGCTCTCTATCACAGCGTTCATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR GCA 72 bp | GCAAAAATAAAACACAGCCAGCCAGAGGCTCGGCGCTaGTTTCCCTCCTGTTACACAGATCTGTCTCTACTA | + |
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Preference number: 3 (lower is better) Translates to: AKIKHSQPEARR*FPSCYTDLSLL Trigger: TAGTAGAGACAGATCTGTGTAACAGGAGGGAAAGCAGCGCCGAGCCTCTGGCTGGCTGTGTTTTATTTTTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR-3UTR CAA 90 bp | AATGAACGCTGTGATAGAGAGCGAGGTGACAGAAGGCGAAGAAGGGAAGGACAGTACTCTGAAGGAGCGTaGGGTTTTAAAGTGCAAACT | + |
|
Preference number: 3 (lower is better) Translates to: NERCDRERGDRRRRREGQYSEGA*GFKVQT Trigger: AGTTTGCACTTTAAAACCCAACGCTCCTTCAGAGTA...CTGTCCTTCCCTTCTTCGCCTTCTGTCACCTCGCTCTCTATCACAGCGTTCATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR TCA 72 bp | AACGTGCTAAGCATTACTGTGAAGGTCCGTGGATCTTaGGGGCCAAAGACCTTATGCACTTCATTAGATGTA | + |
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Preference number: 3 (lower is better) Translates to: NVLSITVKVRGS*GPKTLCTSLDV Trigger: TACATCTAATGAAGTGCATAAGGTCTTTGGCCCTCAAGATCCACGGACCTTCACAGTAATGCTTAGCACGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR TCA 72 bp | TTTCCCCTGATTCCTGTGATCCTAAGTGAATCCGAGTaGAATTTGCTGCTGAGGTCAATGACAATGAACGCT | + |
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Preference number: 3 (lower is better) Translates to: FPLIPVILSESE*NLLLRSMTMNA Trigger: AGCGTTCATTGTCATTGACCTCAGCAGCAAATTTCACTCGGATTCACTTAGGATCACAGGAATCAGGGGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR CCA 72 bp | TATGGTAAACGTGCTAAGCATTACTGTGAAGGTCCGTaGATCTTGAGGGCCAAAGACCTTATGCACTTCATT | + |
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Preference number: 3 (lower is better) Translates to: YGKRAKHYCEGP*ILRAKDLMHFI Trigger: AATGAAGTGCATAAGGTCTTTGGCCCTCAAGATCCACGGACCTTCACAGTAATGCTTAGCACGTTTACCATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR GCA 72 bp | AAAGACCTTATGCACTTCATTAGATGTATGGCAACATaGTGTGATAGAGACAGGTTTACCAAGGCTCAGTTC | + |
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Preference number: 3 (lower is better) Translates to: KDLMHFIRCMAT*CDRDRFTKAQF Trigger: GAACTGAGCCTTGGTAAACCTGTCTCTATCACAGCATGTTGCCATACATCTAATGAAGTGCATAAGGTCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR-3UTR CAA 90 bp | GCTACTCTGAAGGAGCGTTGGGTTTTAAAGTGCAAACTCAAATTAAGTATTTATGAACAAACATTTCAGTaGCCTCTCACCGTCAAATCC | + |
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Preference number: 3 (lower is better) Translates to: ATLKERWVLKCKLKLSIYEQTFQ*PLTVKS Trigger: GGATTTGACGGTGAGAGGCAACTGAAATGTTTGTTC...ATAAATACTTAATTTGAGTTTGCACTTTAAAACCCAACGCTCCTTCAGAGTAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR TCA 72 bp | AGGTTACATGACTTTATTTGCAGAGCCCTACTGCAGTaGTTTGAACAACTCCTAAACAGATGCCATAATAAA | + |
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Preference number: 3 (lower is better) Translates to: RLHDFICRALLQ*FEQLLNRCHNK Trigger: TTTATTATGGCATCTGTTTAGGAGTTGTTCAAATCACTGCAGTAGGGCTCTGCAAATAAAGTCATGTAACCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR TCA 90 bp | AATGAACGCTGTGATAGAGAGCGAGGTGACAGAAGGCGAAGAAGGGAAGGACAGCAAGTTGTACAACACTaGTCTTGCTTCTCGGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: NERCDRERGDRRRRREGQQVVQH*SCFSGR Trigger: CCTGCCCGAGAAGCAAGATCAGTGTTGTACAACTTG...CTGTCCTTCCCTTCTTCGCCTTCTGTCACCTCGCTCTCTATCACAGCGTTCATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR GCA 90 bp | AGGTTTACCAAGGCTCAGTTCTGCAACCCAGGTTGTAAAGTTCTCCAAAGCAGCAAACTGCTCGGTTCCTaGGGTGTCCAGGATTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: RFTKAQFCNPGCKVLQSSKLLGS*GVQDFQ Trigger: CTGGAAATCCTGGACACCGCAGGAACCGAGCAGTTT...GCTGCTTTGGAGAACTTTACAACCTGGGTTGCAGAACTGAGCCTTGGTAAACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR GCA 90 bp | TGGATCTTGAGGGCCAAAGACCTTATGCACTTCATTAGATGTATGGCAACATGCCTCATGGAGGCAAACTaGTCGGTTCCTGCGGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: WILRAKDLMHFIRCMATCLMEAN*SVPAVS Trigger: GGACACCGCAGGAACCGAGCAGTTTGCCTCCATGAG...GCATGTTGCCATACATCTAATGAAGTGCATAAGGTCTTTGGCCCTCAAGATCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR TCA 90 bp | TGGATCTTGAGGGCCAAAGACCTTATGCACTTCATTAGATGTATGGCAACATGCCAGGATTTCCAGTACTaGCGGGGAAGAGTCCACTTC | + |
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Preference number: 4 (lower is better) Translates to: WILRAKDLMHFIRCMATCQDFQY*RGRVHF Trigger: GAAGTGGACTCTTCCCCGTCAGTACTGGAAATCCTG...GCATGTTGCCATACATCTAATGAAGTGCATAAGGTCTTTGGCCCTCAAGATCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR TCA 90 bp | TTTTACATGTGCAGAAGTCTACCAGATGTCAATGACAAGCCTGATGGGCAAAGCTGTTTCCCACTAGGATaGGTGGGACTTTCTCGTATC | + |
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Preference number: 4 (lower is better) Translates to: FYMCRSLPDVNDKPDGQSCFPLG*VGLSRI Trigger: GATACGAGAAAGTCCCACTCATCCTAGTGGGAAACA...GCTTTGCCCATCAGGCTTGTCATTGACATCTGGTAGACTTCTGCACATGTAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR TCA 90 bp | TGGATCTTGAGGGCCAAAGACCTTATGCACTTCATTAGATGTATGGCAACATGCTTGCTGACGTTTCCATaGAAGGACAGCCCCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: WILRAKDLMHFIRCMATCLLTFP*KDSPIL Trigger: AAGAATGGGGCTGTCCTTTCATGGAAACGTCAGCAA...GCATGTTGCCATACATCTAATGAAGTGCATAAGGTCTTTGGCCCTCAAGATCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| 3UTR CAA 72 bp | AAACGTGCTAAGCATTACTGTGAAGGTCCGTGGATCTaGAGGGCCAAAGACCTTATGCACTTCATTAGATGT | + |
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Preference number: 4 (lower is better) Translates to: KRAKHYCEGPWI*RAKDLMHFIRC Trigger: ACATCTAATGAAGTGCATAAGGTCTTTGGCCCTCAAGATCCACGGACCTTCACAGTAATGCTTAGCACGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR GCA 90 bp | GCTACTCTGAAGGAGCGTTGGGTTTTAAAGTGCAAACTCAAATTAAGTATTTATGTCCCGGTGACAAACTaGACGGTGAGGGCAGATTTG | + |
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Preference number: 4 (lower is better) Translates to: ATLKERWVLKCKLKLSIYVPVTN*TVRADL Trigger: CAAATCTGCCCTCACCGTGCAGTTTGTCACCGGGAC...ATAAATACTTAATTTGAGTTTGCACTTTAAAACCCAACGCTCCTTCAGAGTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR GCA 90 bp | TGGATCTTGAGGGCCAAAGACCTTATGCACTTCATTAGATGTATGGCAACATGCCCACTTCGATCTCTTTaGGGTAGAAATCTTCAATGG | + |
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Preference number: 4 (lower is better) Translates to: WILRAKDLMHFIRCMATCPLRSL*GRNLQW Trigger: CCATTGAAGATTTCTACCGCAAAGAGATCGAAGTGG...GCATGTTGCCATACATCTAATGAAGTGCATAAGGTCTTTGGCCCTCAAGATCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR TCA 90 bp | TTTTACATGTGCAGAAGTCTACCAGATGTCAATGACAAGCCTGATGGGCAAAGCGATCTCTCATTGGCTTaGTATCCTGAAAAGACTGTT | + |
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Preference number: 4 (lower is better) Translates to: FYMCRSLPDVNDKPDGQSDLSLA*YPEKTV Trigger: AACAGTCTTTTCAGGATATCAAGCCAATGAGAGATC...GCTTTGCCCATCAGGCTTGTCATTGACATCTGGTAGACTTCTGCACATGTAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR TCA 90 bp | TGGATCTTGAGGGCCAAAGACCTTATGCACTTCATTAGATGTATGGCAACATGCTTCACTCTCACAATCTaGTCTCTCATTGGCTTGATA | + |
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Preference number: 4 (lower is better) Translates to: WILRAKDLMHFIRCMATCFTLTI*SLIGLI Trigger: TATCAAGCCAATGAGAGATCAGATTGTGAGAGTGAA...GCATGTTGCCATACATCTAATGAAGTGCATAAGGTCTTTGGCCCTCAAGATCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR CCA 90 bp | AGGTTTACCAAGGCTCAGTTCTGCAACCCAGGTTGTAAAGTTCTCCAAAGCAGCAATCTGATCTCTCATTaGCTTGATATCCTGAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: RFTKAQFCNPGCKVLQSSNLISH*LDILKR Trigger: TCTTTTCAGGATATCAAGCCAATGAGAGATCAGATT...GCTGCTTTGGAGAACTTTACAACCTGGGTTGCAGAACTGAGCCTTGGTAAACCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR TCA 90 bp | GCTACTCTGAAGGAGCGTTGGGTTTTAAAGTGCAAACTCAAATTAAGTATTTATCTTCTCGGGCAGGGATaGATAGTTCATTTGCCTGAC | + |
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Preference number: 4 (lower is better) Translates to: ATLKERWVLKCKLKLSIYLLGQG*IVHLPD Trigger: GTCAGGCAAATGAACTATTCATCCCTGCCCGAGAAG...ATAAATACTTAATTTGAGTTTGCACTTTAAAACCCAACGCTCCTTCAGAGTAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR TCA 90 bp | GCTACTCTGAAGGAGCGTTGGGTTTTAAAGTGCAAACTCAAATTAAGTATTTATAATAGTTCATTTGCCTaGCGATCTCAGCAAAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: ATLKERWVLKCKLKLSIYNSSFA*RSQQKV Trigger: AACTTTTTGCTGAGATCGTCAGGCAAATGAACTATT...ATAAATACTTAATTTGAGTTTGCACTTTAAAACCCAACGCTCCTTCAGAGTAGC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR CAA 90 bp | GCTACTCTGAAGGAGCGTTGGGTTTTAAAGTGCAAACTCAAATTAAGTATTTATACGGTGAGGGCAGATTaGCCAACCCCTCCGCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: ATLKERWVLKCKLKLSIYTVRAD*PTPPLP Trigger: AGGGAGCGGAGGGGTTGGCAAATCTGCCCTCACCGT...ATAAATACTTAATTTGAGTTTGCACTTTAAAACCCAACGCTCCTTCAGAGTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR CAA 90 bp | TTTTACATGTGCAGAAGTCTACCAGATGTCAATGACAAGCCTGATGGGCAAAGCGGTTCCAGATCCACTTaGTTTCCCACTAGGATGAGT | + |
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Preference number: 5 (lower is better) Translates to: FYMCRSLPDVNDKPDGQSGSRST*FPTRMS Trigger: ACTCATCCTAGTGGGAAACAAAGTGGATCTGGAACC...GCTTTGCCCATCAGGCTTGTCATTGACATCTGGTAGACTTCTGCACATGTAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS TCA 90 bp | GACAACACAAGTTGTACAACACTGATCTTGCTTCTCGGGCAGGGATaGATAGTTCATTTGCCTGACGATCTCAGCAAAAAGTTCATCCAC | + |
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Preference number: 5 (lower is better) Translates to: DNTSCTTLILLLGQG*IVHLPDDLSKKFIH Trigger: GTGGATGAACTTTTTGCTGAGATCGTCAGGCAAATGAACTATTCATCCCTGCCCGAGAAGCAAGATCAGTGTTGTACAACTTGTGTTGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR CAA 90 bp | TTTTACATGTGCAGAAGTCTACCAGATGTCAATGACAAGCCTGATGGGCAAAGCACTGGACAACACAAGTaGTACAACACTGATCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: FYMCRSLPDVNDKPDGQSTGQHK*YNTDLA Trigger: AGCAAGATCAGTGTTGTACAACTTGTGTTGTCCAGT...GCTTTGCCCATCAGGCTTGTCATTGACATCTGGTAGACTTCTGCACATGTAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS TCA 90 bp | AACACTGATCTTGCTTCTCGGGCAGGGATGAATAGTTCATTTGCCTaGCGATCTCAGCAAAAAGTTCATCCACCATTGATTTACTTTTTG | + |
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Preference number: 5 (lower is better) Translates to: NTDLASRAGMNSSFA*RSQQKVHPPLIYFL Trigger: CAAAAAGTAAATCAATGGTGGATGAACTTTTTGCTGAGATCGTCAGGCAAATGAACTATTCATCCCTGCCCGAGAAGCAAGATCAGTGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS-3UTR CAA 90 bp | TGGATCTTGAGGGCCAAAGACCTTATGCACTTCATTAGATGTATGGCAACATGCAAAGTTCATCCACCATaGATTTACTTTTTGCTGACG | + |
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Preference number: 5 (lower is better) Translates to: WILRAKDLMHFIRCMATCKVHPP*IYFLLT Trigger: CGTCAGCAAAAAGTAAATCAATGGTGGATGAACTTT...GCATGTTGCCATACATCTAATGAAGTGCATAAGGTCTTTGGCCCTCAAGATCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS CAA 90 bp | CTGCCTTCGGAAGACATAACCTCTCTCTCTGGTTCCAGATCCACTTaGTTTCCCACTAGGATGAGTGGGACTTTCTCGTATCTCTTCACT | + |
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Preference number: 6 (lower is better) Translates to: LPSEDITSLSGSRST*FPTRMSGTFSYLFT Trigger: AGTGAAGAGATACGAGAAAGTCCCACTCATCCTAGTGGGAAACAAAGTGGATCTGGAACCAGAGAGAGAGGTTATGTCTTCCGAAGGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS TCA 72 bp | CATCCACCATTGATTTACTTTTTGCTGACGTTTCCATaGAAGGACAGCCCCATTCTTGAGCCAGAGCTCTGC | + |
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Preference number: 6 (lower is better) Translates to: HPPLIYFLLTFP*KDSPILEPELC Trigger: GCAGAGCTCTGGCTCAAGAATGGGGCTGTCCTTTCATGGAAACGTCAGCAAAAAGTAAATCAATGGTGGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS CAA 72 bp | GAAGACATAACCTCTCTCTCTGGTTCCAGATCCACTTaGTTTCCCACTAGGATGAGTGGGACTTTCTCGTAT | + |
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Preference number: 6 (lower is better) Translates to: EDITSLSGSRST*FPTRMSGTFSY Trigger: ATACGAGAAAGTCCCACTCATCCTAGTGGGAAACAAAGTGGATCTGGAACCAGAGAGAGAGGTTATGTCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS TCA 72 bp | CTTGCTTCTCGGGCAGGGATGAATAGTTCATTTGCCTaGCGATCTCAGCAAAAAGTTCATCCACCATTGATT | + |
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Preference number: 6 (lower is better) Translates to: LASRAGMNSSFA*RSQQKVHPPLI Trigger: AATCAATGGTGGATGAACTTTTTGCTGAGATCGTCAGGCAAATGAACTATTCATCCCTGCCCGAGAAGCAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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| CDS TCA 72 bp | AGTTGTACAACACTGATCTTGCTTCTCGGGCAGGGATaGATAGTTCATTTGCCTGACGATCTCAGCAAAAAG | + |
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Preference number: 6 (lower is better) Translates to: SCTTLILLLGQG*IVHLPDDLSKK Trigger: CTTTTTGCTGAGATCGTCAGGCAAATGAACTATTCATCCCTGCCCGAGAAGCAAGATCAGTGTTGTACAACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053593.8 |
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