Pregenerated sensors for RAP2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036894Ensembl transcript IDs: ENSMUST00000049064.4
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTCTGCAACGTACACCCTCTCAGACCCTGGCTGAAGGCTGGGGATaGTGGCTACACAAGTCAGCCAGGTTCCTCGGACATCCCAGCCAA | + |
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Preference number: 1 (lower is better) Translates to: ALQRTPSQTLAEGWG*WLHKSARFLGHPSQ Trigger: TTGGCTGGGATGTCCGAGGAACCTGGCTGACTTGTGTAGCCAGCATCCCCAGCCTTCAGCCAGGGTCTGAGAGGGTGTACGTTGCAGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CCA 90 bp | CTGCAACGTACACCCTCTCAGACCCTGGCTGAAGGCTGGGGATGCTaGCTACACAAGTCAGCCAGGTTCCTCGGACATCCCAGCCAAGAC | + |
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Preference number: 1 (lower is better) Translates to: LQRTPSQTLAEGWGC*LHKSARFLGHPSQD Trigger: GTCTTGGCTGGGATGTCCGAGGAACCTGGCTGACTTGTGTAGCCAGCATCCCCAGCCTTCAGCCAGGGTCTGAGAGGGTGTACGTTGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CCA 90 bp | ATCTCAAAGCAAGAAGACAATCACATTAAGAGAATCGGGTGCGTTTaGCTTTGTGCACAGAGCGTGGCCAGCGCCCGGCGGCAGACGGCG | + |
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Preference number: 1 (lower is better) Translates to: ISKQEDNHIKRIGCV*LCAQSVASARRQTA Trigger: CGCCGTCTGCCGCCGGGCGCTGGCCACGCTCTGTGCACAAAGCCAAACGCACCCGATTCTCTTAATGTGATTGTCTTCTTGCTTTGAGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR GCA 90 bp | TCTCCAATCTCAAAGCAAGAAGACAATCACATTAAGAGAATCGGGTaGGTTTGGCTTTGTGCACAGAGCGTGGCCAGCGCCCGGCGGCAG | + |
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Preference number: 1 (lower is better) Translates to: SPISKQEDNHIKRIG*VWLCAQSVASARRQ Trigger: CTGCCGCCGGGCGCTGGCCACGCTCTGTGCACAAAGCCAAACGCACCCGATTCTCTTAATGTGATTGTCTTCTTGCTTTGAGATTGGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR TCA 90 bp | AAGCCTGCCCTGCCTTCCATGACCTCTGGGAAGCCTCTGGAGAGGTaGTTAATGCACCAACAATCTAGATCACTGTCCACCTTCAAGTAT | + |
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Preference number: 1 (lower is better) Translates to: KPALPSMTSGKPLER*LMHQQSRSLSTFKY Trigger: ATACTTGAAGGTGGACAGTGATCTAGATTGTTGGTGCATTAATCACCTCTCCAGAGGCTTCCCAGAGGTCATGGAAGGCAGGGCAGGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR TCA 90 bp | TTTGTATACTTGGAAGCAGAATCACATCTGACACTAATGGAGATGTaGGATCCGAGTTGGAGAATAAACAAAGGCCAGGACAGGCAAAAT | + |
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Preference number: 1 (lower is better) Translates to: FVYLEAESHLTLMEM*DPSWRINKGQDRQN Trigger: ATTTTGCCTGTCCTGGCCTTTGTTTATTCTCCAACTCGGATCTCACATCTCCATTAGTGTCAGATGTGATTCTGCTTCCAAGTATACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR GCA 90 bp | AGCAGAGCAGTGCTTCCTCATCTGGACAGTCAGATGCCCTGGCCATACCCTGTGACAAGAACCCAACTTTaGATAGACATCCTCAGAATC | + |
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Preference number: 2 (lower is better) Translates to: SRAVLPHLDSQMPWPYPVTRTQL*IDILRI Trigger: GATTCTGAGGATGTCTATGCAAAGTTGGGTTCTTGT...CACAGGGTATGGCCAGGGCATCTGACTGTCCAGATGAGGAAGCACTGCTCTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR GCA 90 bp | CAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAGGAGAGGGAACCCTCCCCCACTaGCTCCTTCCCCTTCACTTC | + |
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Preference number: 2 (lower is better) Translates to: QHTLPPTFKNCCGQIEGEGTLPH*LLPLHF Trigger: GAAGTGAAGGGGAAGGAGGCAGTGGGGGAGGGTTCC...CTCTCCTTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR GCA 90 bp | CAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAGGAGAGGCTGAAGGCTGGGGATaGTGGCTACACAAGTCAGCC | + |
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Preference number: 2 (lower is better) Translates to: QHTLPPTFKNCCGQIEGEAEGWG*WLHKSA Trigger: GGCTGACTTGTGTAGCCAGCATCCCCAGCCTTCAGC...CTCTCCTTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CCA 90 bp | CAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAGGAGAGGAAGGCTGGGGATGCTaGCTACACAAGTCAGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: QHTLPPTFKNCCGQIEGEEGWGC*LHKSAR Trigger: CCTGGCTGACTTGTGTAGCCAGCATCCCCAGCCTTC...CTCTCCTTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CAA 90 bp | GGTCCTATTCATCCTGGCTCTTTCAGGAAGATGCTTAAAGTAGTTTaGGGGAAAGCAGAACAGCAGATTCTGGGACATGGTGGGAATTCA | + |
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Preference number: 2 (lower is better) Translates to: GPIHPGSFRKMLKVV*GKAEQQILGHGGNS Trigger: TGAATTCCCACCATGTCCCAGAATCTGCTGTTCTGCTTTCCCCAAAACTACTTTAAGCATCTTCCTGAAAGAGCCAGGATGAATAGGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CAA 90 bp | GGAAGCAGAATCACATCTGACACTAATGGAGATGTGAGATCCGAGTaGGAGAATAAACAAAGGCCAGGACAGGCAAAATGTTCTTCCTGC | + |
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Preference number: 2 (lower is better) Translates to: GSRITSDTNGDVRSE*ENKQRPGQAKCSSC Trigger: GCAGGAAGAACATTTTGCCTGTCCTGGCCTTTGTTTATTCTCCAACTCGGATCTCACATCTCCATTAGTGTCAGATGTGATTCTGCTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR GCA 90 bp | CAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAGGAGAGTCTTCAGCAGAGCAGTaGTTCCTCATCTGGACAGTC | + |
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Preference number: 2 (lower is better) Translates to: QHTLPPTFKNCCGQIEGESSAEQ*FLIWTV Trigger: GACTGTCCAGATGAGGAAGCACTGCTCTGCTGAAGA...CTCTCCTTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CCA 90 bp | AAACACCAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAATGGGAATTCACAGGTTaGCACCGGCTGGAACAGCTG | + |
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Preference number: 2 (lower is better) Translates to: KHQHTLPPTFKNCCGQIEWEFTG*HRLEQL Trigger: CAGCTGTTCCAGCCGGTGCCAACCTGTGAATTCCCA...TTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTGGTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CCA 90 bp | ATCACATCTGACACTAATGGAGATGTGAGATCCGAGTTGGAGAATAAACAAAGGGCAGATTCTGGGACATaGTGGGAATTCACAGGTTGG | + |
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Preference number: 2 (lower is better) Translates to: ITSDTNGDVRSELENKQRADSGT*WEFTGW Trigger: CCAACCTGTGAATTCCCACCATGTCCCAGAATCTGC...CCTTTGTTTATTCTCCAACTCGGATCTCACATCTCCATTAGTGTCAGATGTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CCA 90 bp | TTTAAAGAAACCTGTGATCTCTTTTGGCTTTGCCAAGGGAGTAAATTCCTTAGTCAGTGCTTCCTCATCTaGACAGTCAGATGCCCTGGC | + |
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Preference number: 2 (lower is better) Translates to: FKETCDLFWLCQGSKFLSQCFLI*TVRCPG Trigger: GCCAGGGCATCTGACTGTCCAGATGAGGAAGCACTG...ACTAAGGAATTTACTCCCTTGGCAAAGCCAAAAGAGATCACAGGTTTCTTTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CCA 90 bp | AAACACCAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAGACAGTCAGATGCCCTaGCCATACCCTGTGAGTCTT | + |
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Preference number: 2 (lower is better) Translates to: KHQHTLPPTFKNCCGQIEDSQMP*PYPVSL Trigger: AAGACTCACAGGGTATGGCCAGGGCATCTGACTGTC...TTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTGGTGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR GCA 90 bp | CAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAGGAGAGTTTGAAACTTTTGCTTaGCGGTGTCAAGCAGCCAAT | + |
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Preference number: 2 (lower is better) Translates to: QHTLPPTFKNCCGQIEGEFETFA*RCQAAN Trigger: ATTGGCTGCTTGACACCGGCAAGCAAAAGTTTCAAA...CTCTCCTTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CCA 90 bp | CAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAGGAGAGTTTCGTCCCCTCTTCTaGCTCCTTCATATGATTTTC | + |
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Preference number: 2 (lower is better) Translates to: QHTLPPTFKNCCGQIEGEFRPLF*LLHMIF Trigger: GAAAATCATATGAAGGAGCCAGAAGAGGGGACGAAA...CTCTCCTTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CCA 90 bp | TTTAAAGAAACCTGTGATCTCTTTTGGCTTTGCCAAGGGAGTAAATTCCTTAGTCAGAACAGCAGATTCTaGGACATGGTGGGAATTCAC | + |
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Preference number: 2 (lower is better) Translates to: FKETCDLFWLCQGSKFLSQNSRF*DMVGIH Trigger: GTGAATTCCCACCATGTCCCAGAATCTGCTGTTCTG...ACTAAGGAATTTACTCCCTTGGCAAAGCCAAAAGAGATCACAGGTTTCTTTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CCA 90 bp | ATCACATCTGACACTAATGGAGATGTGAGATCCGAGTTGGAGAATAAACAAAGGACCTGTGATCTCTTTTaGCTTTGCCAAGGGAGTAAA | + |
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Preference number: 2 (lower is better) Translates to: ITSDTNGDVRSELENKQRTCDLF*LCQGSK Trigger: TTTACTCCCTTGGCAAAGCCAAAAGAGATCACAGGT...CCTTTGTTTATTCTCCAACTCGGATCTCACATCTCCATTAGTGTCAGATGTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR GCA 90 bp | ATCACATCTGACACTAATGGAGATGTGAGATCCGAGTTGGAGAATAAACAAAGGGTCCCAGTTCACATGTaGAATACTTCAGATTGGATA | + |
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Preference number: 2 (lower is better) Translates to: ITSDTNGDVRSELENKQRVPVHM*NTSDWI Trigger: TATCCAATCTGAAGTATTGCACATGTGAACTGGGAC...CCTTTGTTTATTCTCCAACTCGGATCTCACATCTCCATTAGTGTCAGATGTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CCA 90 bp | AAACACCAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAAGGTCCTATTCATCCTaGCTCTTTCAGGAAGATGCT | + |
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Preference number: 2 (lower is better) Translates to: KHQHTLPPTFKNCCGQIERSYSS*LFQEDA Trigger: AGCATCTTCCTGAAAGAGCCAGGATGAATAGGACCT...TTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTGGTGTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR TCA 90 bp | AAACACCAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAACGGGGAAATATGCATaGACCAAAATCAACGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: KHQHTLPPTFKNCCGQIETGKYA*TKINEE Trigger: TTCCTCGTTGATTTTGGTTCATGCATATTTCCCCGT...TTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTGGTGTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR TCA 90 bp | TTTAAAGAAACCTGTGATCTCTTTTGGCTTTGCCAAGGGAGTAAATTCCTTAGTTCTGGCTCCTTCATATaGTTTTCTTGGACCTCTTTC | + |
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Preference number: 2 (lower is better) Translates to: FKETCDLFWLCQGSKFLSSGSFI*FSWTSF Trigger: GAAAGAGGTCCAAGAAAATCATATGAAGGAGCCAGA...ACTAAGGAATTTACTCCCTTGGCAAAGCCAAAAGAGATCACAGGTTTCTTTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR GCA 90 bp | ATCACATCTGACACTAATGGAGATGTGAGATCCGAGTTGGAGAATAAACAAAGGCACGAAATGATGAGATaGAACTTGGATGGAGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: ITSDTNGDVRSELENKQRHEMMR*NLDGEK Trigger: TTTTTCTCCATCCAAGTTGCATCTCATCATTTCGTG...CCTTTGTTTATTCTCCAACTCGGATCTCACATCTCCATTAGTGTCAGATGTGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CAA 90 bp | GCCAAGGGAGTAAATTCCTTAGTTAAGACTCTTCAGACATCAGCTTaGCCTCAGGAACCTGTGGTATTATATCTTATAGATACTTTGTTA | + |
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Preference number: 2 (lower is better) Translates to: AKGVNSLVKTLQTSA*PQEPVVLYLIDTLL Trigger: TAACAAAGTATCTATAAGATATAATACCACAGGTTCCTGAGGCAAAGCTGATGTCTGAAGAGTCTTAACTAAGGAATTTACTCCCTTGGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CCA 90 bp | AAACACCAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAACCTTGTGTTAAAACTTaGAACTATGAACAGTTGCTC | + |
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Preference number: 2 (lower is better) Translates to: KHQHTLPPTFKNCCGQIEPCVKT*NYEQLL Trigger: GAGCAACTGTTCATAGTTCCAAGTTTTAACACAAGG...TTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTGGTGTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CAA 90 bp | CAAATAGAAGGAGAGCAAGGGAATCCTCTTCGTCTTGTTTACTTTTaGTTCTCAATCTTTGATTTGGTTCCAAATAAAAACTTTGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: QIEGEQGNPLRLVYF*FSIFDLVPNKNFGR Trigger: CCTTCCAAAGTTTTTATTTGGAACCAAATCAAAGATTGAGAACAAAAAGTAAACAAGACGAAGAGGATTCCCTTGCTCTCCTTCTATTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR GCA 90 bp | AAACACCAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAATCACAATAAAATTTTaGTCTTTGCCTCTGGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: KHQHTLPPTFKNCCGQIEITIKF*SLPLEE Trigger: TTCCTCCAGAGGCAAAGAGCAAAATTTTATTGTGAT...TTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTGGTGTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CCA 72 bp | ACACCCTCTCAGACCCTGGCTGAAGGCTGGGGATGCTaGCTACACAAGTCAGCCAGGTTCCTCGGACATCCC | + |
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Preference number: 3 (lower is better) Translates to: TPSQTLAEGWGC*LHKSARFLGHP Trigger: GGGATGTCCGAGGAACCTGGCTGACTTGTGTAGCCAGCATCCCCAGCCTTCAGCCAGGGTCTGAGAGGGTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR GCA 72 bp | CGTACACCCTCTCAGACCCTGGCTGAAGGCTGGGGATaGTGGCTACACAAGTCAGCCAGGTTCCTCGGACAT | + |
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Preference number: 3 (lower is better) Translates to: RTPSQTLAEGWG*WLHKSARFLGH Trigger: ATGTCCGAGGAACCTGGCTGACTTGTGTAGCCAGCATCCCCAGCCTTCAGCCAGGGTCTGAGAGGGTGTACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CCA 72 bp | CTGCAACGTACACCCTCTCAGACCCTGGCTGAAGGCTaGGGATGCTGGCTACACAAGTCAGCCAGGTTCCTC | + |
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Preference number: 3 (lower is better) Translates to: LQRTPSQTLAEG*GCWLHKSARFL Trigger: GAGGAACCTGGCTGACTTGTGTAGCCAGCATCCCCAGCCTTCAGCCAGGGTCTGAGAGGGTGTACGTTGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CAA 90 bp | AGCAGAGCAGTGCTTCCTCATCTGGACAGTCAGATGCCCTGGCCATACCCTGTGGTGGGAATTCACAGGTaGGCACCGGCTGGAACAGCT | + |
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Preference number: 3 (lower is better) Translates to: SRAVLPHLDSQMPWPYPVVGIHR*APAGTA Trigger: AGCTGTTCCAGCCGGTGCCAACCTGTGAATTCCCAC...CACAGGGTATGGCCAGGGCATCTGACTGTCCAGATGAGGAAGCACTGCTCTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CCA 72 bp | CAAGAAGACAATCACATTAAGAGAATCGGGTGCGTTTaGCTTTGTGCACAGAGCGTGGCCAGCGCCCGGCGG | + |
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Preference number: 3 (lower is better) Translates to: QEDNHIKRIGCV*LCAQSVASARR Trigger: CCGCCGGGCGCTGGCCACGCTCTGTGCACAAAGCCAAACGCACCCGATTCTCTTAATGTGATTGTCTTCTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CCA 72 bp | TCTCAGATGCTCTGCAACGTACACCCTCTCAGACCCTaGCTGAAGGCTGGGGATGCTGGCTACACAAGTCAG | + |
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Preference number: 3 (lower is better) Translates to: SQMLCNVHPLRP*LKAGDAGYTSQ Trigger: CTGACTTGTGTAGCCAGCATCCCCAGCCTTCAGCCAGGGTCTGAGAGGGTGTACGTTGCAGAGCATCTGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CCA 72 bp | AGGCATCATGGACCTGGCCCGATCCACCTCCCCGCCTaGCACCATATTCACGGAGACTGTAAATCACTGAAT | + |
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Preference number: 3 (lower is better) Translates to: RHHGPGPIHLPA*HHIHGDCKSLN Trigger: ATTCAGTGATTTACAGTCTCCGTGAATATGGTGCCAGGCGGGGAGGTGGATCGGGCCAGGTCCATGATGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CAA 90 bp | AGCAGAGCAGTGCTTCCTCATCTGGACAGTCAGATGCCCTGGCCATACCCTGTGATGCTTAAAGTAGTTTaGGGGAAAGCAGAACAGCAG | + |
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Preference number: 3 (lower is better) Translates to: SRAVLPHLDSQMPWPYPVMLKVV*GKAEQQ Trigger: CTGCTGTTCTGCTTTCCCCAAAACTACTTTAAGCAT...CACAGGGTATGGCCAGGGCATCTGACTGTCCAGATGAGGAAGCACTGCTCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR TCA 72 bp | CTGCCTTCCATGACCTCTGGGAAGCCTCTGGAGAGGTaGTTAATGCACCAACAATCTAGATCACTGTCCACC | + |
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Preference number: 3 (lower is better) Translates to: LPSMTSGKPLER*LMHQQSRSLST Trigger: GGTGGACAGTGATCTAGATTGTTGGTGCATTAATCACCTCTCCAGAGGCTTCCCAGAGGTCATGGAAGGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR GCA 72 bp | TCAAAGCAAGAAGACAATCACATTAAGAGAATCGGGTaGGTTTGGCTTTGTGCACAGAGCGTGGCCAGCGCC | + |
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Preference number: 3 (lower is better) Translates to: SKQEDNHIKRIG*VWLCAQSVASA Trigger: GGCGCTGGCCACGCTCTGTGCACAAAGCCAAACGCACCCGATTCTCTTAATGTGATTGTCTTCTTGCTTTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CAA 90 bp | AGCAGAGCAGTGCTTCCTCATCTGGACAGTCAGATGCCCTGGCCATACCCTGTGCTTCATATGATTTTCTaGGACCTCTTTCCTTGTGTT | + |
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Preference number: 3 (lower is better) Translates to: SRAVLPHLDSQMPWPYPVLHMIF*DLFPCV Trigger: AACACAAGGAAAGAGGTCCAAGAAAATCATATGAAG...CACAGGGTATGGCCAGGGCATCTGACTGTCCAGATGAGGAAGCACTGCTCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR GCA 72 bp | AACAGTAAAGTTCATTACTCTTCTTCAGCAGAGCAGTaGTTCCTCATCTGGACAGTCAGATGCCCTGGCCAT | + |
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Preference number: 3 (lower is better) Translates to: NSKVHYSSSAEQ*FLIWTVRCPGH Trigger: ATGGCCAGGGCATCTGACTGTCCAGATGAGGAAGCACTGCTCTGCTGAAGAAGAGTAATGAACTTTACTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR GCA 72 bp | TTTACAGTACTCAGTAGAAACATGTTTTCAAAAGCCTaGCCTGCCTTCCATGACCTCTGGGAAGCCTCTGGA | + |
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Preference number: 3 (lower is better) Translates to: FTVLSRNMFSKA*PAFHDLWEASG Trigger: TCCAGAGGCTTCCCAGAGGTCATGGAAGGCAGGGCAGGCTTTTGAAAACATGTTTCTACTGAGTACTGTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CAA 90 bp | TTTAAAGAAACCTGTGATCTCTTTTGGCTTTGCCAAGGGAGTAAATTCCTTAGTGAGAATCGGGTGCGTTaGGCTTTGTGCACAGAGCGT | + |
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Preference number: 3 (lower is better) Translates to: FKETCDLFWLCQGSKFLSENRVR*ALCTER Trigger: ACGCTCTGTGCACAAAGCCAAACGCACCCGATTCTC...ACTAAGGAATTTACTCCCTTGGCAAAGCCAAAAGAGATCACAGGTTTCTTTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CAA 90 bp | AAACACCAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAATGGAACTATGAACAGTaGCTCAGGGGAACCCTCCCC | + |
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Preference number: 3 (lower is better) Translates to: KHQHTLPPTFKNCCGQIEWNYEQ*LRGTLP Trigger: GGGGAGGGTTCCCCTGAGCAACTGTTCATAGTTCCA...TTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTGGTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR TCA 72 bp | CAGATGCCCTGGCCATACCCTGTGAGTCTTAGGCCTTaGTACTTTTCTCCACTTTTAAAGACTTGGAAACAT | + |
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Preference number: 3 (lower is better) Translates to: QMPWPYPVSLRP*YFSPLLKTWKH Trigger: ATGTTTCCAAGTCTTTAAAAGTGGAGAAAAGTATCAAGGCCTAAGACTCACAGGGTATGGCCAGGGCATCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR TCA 72 bp | TTGGAAGCAGAATCACATCTGACACTAATGGAGATGTaGGATCCGAGTTGGAGAATAAACAAAGGCCAGGAC | + |
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Preference number: 3 (lower is better) Translates to: LEAESHLTLMEM*DPSWRINKGQD Trigger: GTCCTGGCCTTTGTTTATTCTCCAACTCGGATCTCACATCTCCATTAGTGTCAGATGTGATTCTGCTTCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR GCA 72 bp | CTTCAGATTGGATACACTGTAACAAGAACCCAACTTTaGATAGACATCCTCAGAATCGTAATCAGTCCCTGG | + |
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Preference number: 3 (lower is better) Translates to: LQIGYTVTRTQL*IDILRIVISPW Trigger: CCAGGGACTGATTACGATTCTGAGGATGTCTATGCAAAGTTGGGTTCTTGTTACAGTGTATCCAATCTGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR GCA 72 bp | GCAACCCCTCCAACAGTGCTTGACACATCTTCAAAATaGGTCAACACTTTAAATGTGCAACACTTTCATCGA | + |
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Preference number: 3 (lower is better) Translates to: ATPPTVLDTSSK*VNTLNVQHFHR Trigger: TCGATGAAAGTGTTGCACATTTAAAGTGTTGACGCATTTTGAAGATGTGTCAAGCACTGTTGGAGGGGTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CAA 90 bp | ATCACATCTGACACTAATGGAGATGTGAGATCCGAGTTGGAGAATAAACAAAGGGGAATCCTCTTCGTCTaGTTTACTTTTTGTTCTCAA | + |
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Preference number: 3 (lower is better) Translates to: ITSDTNGDVRSELENKQRGILFV*FTFCSQ Trigger: TTGAGAACAAAAAGTAAACAAGACGAAGAGGATTCC...CCTTTGTTTATTCTCCAACTCGGATCTCACATCTCCATTAGTGTCAGATGTGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CCA 72 bp | TGTGAGATCAAAGTTAAGATCACTTCTGACTCGGTGTaGGACATAAACAGACAACATCAAACCAAGACAAAT | + |
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Preference number: 3 (lower is better) Translates to: CEIKVKITSDSV*DINRQHQTKTN Trigger: ATTTGTCTTGGTTTGATGTTGTCTGTTTATGTCCCACACCGAGTCAGAAGTGATCTTAACTTTGATCTCACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR-3UTR CAA 90 bp | AAACACCAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAAACAAGAACCCAACTTaGCATAGACATCCTCAGAAT | + |
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Preference number: 3 (lower is better) Translates to: KHQHTLPPTFKNCCGQIENKNPT*HRHPQN Trigger: ATTCTGAGGATGTCTATGCAAAGTTGGGTTCTTGTT...TTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTGGTGTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR TCA 72 bp | AACAATCTAGATCACTGTCCACCTTCAAGTATTTTCTaGGCTATATACTTGGCAACACTTTTGTTCAAAGCC | + |
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Preference number: 3 (lower is better) Translates to: NNLDHCPPSSIF*AIYLATLLFKA Trigger: GGCTTTGAACAAAAGTGTTGCCAAGTATATAGCTCAGAAAATACTTGAAGGTGGACAGTGATCTAGATTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS-3UTR GCA 90 bp | AGCAGAGCAGTGCTTCCTCATCTGGACAGTCAGATGCCCTGGCCATACCCTGTGGTCGCCGTTGGGCTGTaGCGCGTAGTTCATCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: SRAVLPHLDSQMPWPYPVVAVGL*RVVHLP Trigger: AGGCAGATGAACTACGCGGCACAGCCCAACGGCGAC...CACAGGGTATGGCCAGGGCATCTGACTGTCCAGATGAGGAAGCACTGCTCTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS-3UTR CCA 90 bp | CAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAGGAGAGTGCCTACCAGGATCATaGGTACGCGCTCGTACCGCT | + |
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Preference number: 4 (lower is better) Translates to: QHTLPPTFKNCCGQIEGECLPGS*VRARTA Trigger: AGCGGTACGAGCGCGTACCCATGATCCTGGTAGGCA...CTCTCCTTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS-3UTR CCA 90 bp | AAACACCAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAAGCCCTCGTCGCCGTTaGGCTGTGCCGCGTAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: KHQHTLPPTFKNCCGQIESPRRR*AVPRSS Trigger: TGAACTACGCGGCACAGCCCAACGGCGACGAGGGCT...TTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTGGTGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS-3UTR GCA 90 bp | CAAAGCAAGAAGACAATCACATTAAGAGAATCGGGTGCGTTTGGCTTTGTGCACCCAAGTCCACCTTGTTaGCTACCAGGATCATGGGTA | + |
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Preference number: 4 (lower is better) Translates to: QSKKTITLRESGAFGFVHPSPPC*LPGSWV Trigger: TACCCATGATCCTGGTAGGCAACAAGGTGGACTTGG...GTGCACAAAGCCAAACGCACCCGATTCTCTTAATGTGATTGTCTTCTTGCTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS-3UTR TCA 90 bp | CAAAGCAAGAAGACAATCACATTAAGAGAATCGGGTGCGTTTGGCTTTGTGCACGGTCGTACTTCTCGATaGAGGAACCTGTTACGAACT | + |
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Preference number: 4 (lower is better) Translates to: QSKKTITLRESGAFGFVHGRTSR*RNLLRT Trigger: AGTTCGTAACAGGTTCCTTCATCGAGAAGTACGACC...GTGCACAAAGCCAAACGCACCCGATTCTCTTAATGTGATTGTCTTCTTGCTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS-3UTR GCA 90 bp | ATCACATCTGACACTAATGGAGATGTGAGATCCGAGTTGGAGAATAAACAAAGGCCACCTCGATCTCCTTaGGGTAAAAGTCCTCGATGG | + |
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Preference number: 4 (lower is better) Translates to: ITSDTNGDVRSELENKQRPPRSP*GKSPRW Trigger: CCATCGAGGACTTTTACCGCAAGGAGATCGAGGTGG...CCTTTGTTTATTCTCCAACTCGGATCTCACATCTCCATTAGTGTCAGATGTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CAA 72 bp | CATCCTGGCTCTTTCAGGAAGATGCTTAAAGTAGTTTaGGGGAAAGCAGAACAGCAGATTCTGGGACATGGT | + |
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Preference number: 4 (lower is better) Translates to: HPGSFRKMLKVV*GKAEQQILGHG Trigger: ACCATGTCCCAGAATCTGCTGTTCTGCTTTCCCCAAAACTACTTTAAGCATCTTCCTGAAAGAGCCAGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS-3UTR GCA 90 bp | AAACACCAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAGAACCTGTTACGAACTaGACGGTGAGCGCGGACTTG | + |
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Preference number: 4 (lower is better) Translates to: KHQHTLPPTFKNCCGQIEEPVTN*TVSADL Trigger: CAAGTCCGCGCTCACCGTGCAGTTCGTAACAGGTTC...TTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTGGTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| 3UTR CAA 72 bp | GGAGAGCAAGGGAATCCTCTTCGTCTTGTTTACTTTTaGTTCTCAATCTTTGATTTGGTTCCAAATAAAAAC | + |
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Preference number: 4 (lower is better) Translates to: GEQGNPLRLVYF*FSIFDLVPNKN Trigger: GTTTTTATTTGGAACCAAATCAAAGATTGAGAACAAAAAGTAAACAAGACGAAGAGGATTCCCTTGCTCTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS GCA 90 bp | CCTCGCCATAGGAGACCTCACGTTCACCCTCCAAGTCCACCTTGTTaGCTACCAGGATCATGGGTACGCGCTCGTACCGCTTCACGCGGA | + |
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Preference number: 5 (lower is better) Translates to: PRHRRPHVHPPSPPC*LPGSWVRARTASRG Trigger: TCCGCGTGAAGCGGTACGAGCGCGTACCCATGATCCTGGTAGGCAACAAGGTGGACTTGGAGGGTGAACGTGAGGTCTCCTATGGCGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS-3UTR CAA 90 bp | AGCAGAGCAGTGCTTCCTCATCTGGACAGTCAGATGCCCTGGCCATACCCTGTGACTGAGGCTTTGTTTTaGGCCGATGTCTCCATGAAG | + |
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Preference number: 5 (lower is better) Translates to: SRAVLPHLDSQMPWPYPVTEALF*ADVSMK Trigger: CTTCATGGAGACATCGGCCAAAAACAAAGCCTCAGT...CACAGGGTATGGCCAGGGCATCTGACTGTCCAGATGAGGAAGCACTGCTCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS-3UTR CAA 90 bp | CAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAGGAGAGCCCTCCAAGTCCACCTaGTTGCCTACCAGGATCATG | + |
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Preference number: 5 (lower is better) Translates to: QHTLPPTFKNCCGQIEGEPSKST*LPTRIM Trigger: CATGATCCTGGTAGGCAACAAGGTGGACTTGGAGGG...CTCTCCTTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS-3UTR CAA 90 bp | CAAAGCAAGAAGACAATCACATTAAGAGAATCGGGTGCGTTTGGCTTTGTGCACTCATCCACTGAGGCTTaGTTTTTGGCCGATGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: QSKKTITLRESGAFGFVHSSTEA*FLADVS Trigger: GGAGACATCGGCCAAAAACAAAGCCTCAGTGGATGA...GTGCACAAAGCCAAACGCACCCGATTCTCTTAATGTGATTGTCTTCTTGCTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS-3UTR CAA 90 bp | CAACACACATTGCCTCCTACTTTTAAAAACTGTTGTGGGCAAATAGAAGGAGAGTCCAAGTCCACCTTGTaGCCTACCAGGATCATGGGT | + |
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Preference number: 5 (lower is better) Translates to: QHTLPPTFKNCCGQIEGESKSTL*PTRIMG Trigger: ACCCATGATCCTGGTAGGCAACAAGGTGGACTTGGA...CTCTCCTTCTATTTGCCCACAACAGTTTTTAAAAGTAGGAGGCAATGTGTGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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| CDS GCA 72 bp | AGGAGACCTCACGTTCACCCTCCAAGTCCACCTTGTTaGCTACCAGGATCATGGGTACGCGCTCGTACCGCT | + |
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Preference number: 6 (lower is better) Translates to: RRPHVHPPSPPC*LPGSWVRARTA Trigger: AGCGGTACGAGCGCGTACCCATGATCCTGGTAGGCAACAAGGTGGACTTGGAGGGTGAACGTGAGGTCTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049064.4 |
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