Pregenerated sensors for RAP2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051615Ensembl transcript IDs: ENSMUST00000062117.14
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCAGAGGAACAGGGAGAGGGCGTGGTACAGTTTGGCCTGGGGAAGTaGTGCCCAGGCACTATGAAGGGCTGGTGTAAACACTGGGCCTTA | + |
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Preference number: 1 (lower is better) Translates to: PEEQGEGVVQFGLGK*CPGTMKGWCKHWAL Trigger: TAAGGCCCAGTGTTTACACCAGCCCTTCATAGTGCCTGGGCATCACTTCCCCAGGCCAAACTGTACCACGCCCTCTCCCTGTTCCTCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CCA 90 bp | GGCTGGTGTAAACACTGGGCCTTAGGAAGAGCCTGCCCAGATGCCTaGCAAAAGCTCCCACTTCACACCTTGCCCGGCTTTCTCAGGCTT | + |
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Preference number: 1 (lower is better) Translates to: GWCKHWALGRACPDA*QKLPLHTLPGFLRL Trigger: AAGCCTGAGAAAGCCGGGCAAGGTGTGAAGTGGGAGCTTTTGCCAGGCATCTGGGCAGGCTCTTCCTAAGGCCCAGTGTTTACACCAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CCA 90 bp | ACAGAAACACCTAGAAGGCTTCCCAGCACATGCTGGCTTGTCCTGTaGAAGCTGAGGAGCAGAAAGGCGTTGGTTACCGCCGCTGCCACA | + |
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Preference number: 1 (lower is better) Translates to: TETPRRLPSTCWLVL*KLRSRKALVTAAAT Trigger: TGTGGCAGCGGCGGTAACCAACGCCTTTCTGCTCCTCAGCTTCCACAGGACAAGCCAGCATGTGCTGGGAAGCCTTCTAGGTGTTTCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR GCA 90 bp | CGTCAAATGAGGTCACCCTGTAGCTTGGCGGTGGGGCCTTCAGGTTaGAGATGTACAAGGACTGAGGACAGAAGTGGAGGCTGTAGTCAC | + |
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Preference number: 1 (lower is better) Translates to: RQMRSPCSLAVGPSG*RCTRTEDRSGGCSH Trigger: GTGACTACAGCCTCCACTTCTGTCCTCAGTCCTTGTACATCTGCAACCTGAAGGCCCCACCGCCAAGCTACAGGGTGACCTCATTTGACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CCA 90 bp | GCACGCACGCACGCACAAACAAAGCCAGATGTCTGTACTGTCCTGTaGGGTGTCTGCAAACGGGAGCGTGTGGGTGTAACATGGCTTCAT | + |
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Preference number: 1 (lower is better) Translates to: ARTHAQTKPDVCTVL*GVCKRERVGVTWLH Trigger: ATGAAGCCATGTTACACCCACACGCTCCCGTTTGCAGACACCCCACAGGACAGTACAGACATCTGGCTTTGTTTGTGCGTGCGTGCGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR TCA 90 bp | CAGTGGCTTCTGTCACCTCAACAGCAATGCCATCATCACGTCAAATaGGGTCACCCTGTAGCTTGGCGGTGGGGCCTTCAGGTTGCAGAT | + |
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Preference number: 1 (lower is better) Translates to: QWLLSPQQQCHHHVK*GHPVAWRWGLQVAD Trigger: ATCTGCAACCTGAAGGCCCCACCGCCAAGCTACAGGGTGACCTCATTTGACGTGATGATGGCATTGCTGTTGAGGTGACAGAAGCCACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR GCA 90 bp | TTTATCCCCATCTCAGCACCATCATGCACAACTGTCAGTCAGACTTaGACCAGAGGAACAGGGAGAGGGCGTGGTACAGTTTGGCCTGGG | + |
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Preference number: 1 (lower is better) Translates to: FIPISAPSCTTVSQT*TRGTGRGRGTVWPG Trigger: CCCAGGCCAAACTGTACCACGCCCTCTCCCTGTTCCTCTGGTGCAAGTCTGACTGACAGTTGTGCATGATGGTGCTGAGATGGGGATAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR GCA 90 bp | CACCTCTCACGGTGTACAGAAACACCTAGAAGGCTTCCCAGCACATaGTGGCTTGTCCTGTGGAAGCTGAGGAGCAGAAAGGCGTTGGTT | + |
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Preference number: 1 (lower is better) Translates to: HLSRCTETPRRLPST*WLVLWKLRSRKALV Trigger: AACCAACGCCTTTCTGCTCCTCAGCTTCCACAGGACAAGCCAGCATGTGCTGGGAAGCCTTCTAGGTGTTTCTGTACACCGTGAGAGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CCA 90 bp | CTCTCACGGTGTACAGAAACACCTAGAAGGCTTCCCAGCACATGCTaGCTTGTCCTGTGGAAGCTGAGGAGCAGAAAGGCGTTGGTTACC | + |
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Preference number: 1 (lower is better) Translates to: LSRCTETPRRLPSTC*LVLWKLRSRKALVT Trigger: GGTAACCAACGCCTTTCTGCTCCTCAGCTTCCACAGGACAAGCCAGCATGTGCTGGGAAGCCTTCTAGGTGTTTCTGTACACCGTGAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CCA 90 bp | ACTGTCCTGTGGGGTGTCTGCAAACGGGAGCGTGTGGGTGTAACATaGCTTCATTTTCCTTCTGCGATGGTTAATCGGCTACAAGGCTCG | + |
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Preference number: 1 (lower is better) Translates to: TVLWGVCKRERVGVT*LHFPSAMVNRLQGS Trigger: CGAGCCTTGTAGCCGATTAACCATCGCAGAAGGAAAATGAAGCCATGTTACACCCACACGCTCCCGTTTGCAGACACCCCACAGGACAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CCA 90 bp | AAAAAGCAAGCAAGCATCAGTAGTTCTACCCCAGAGAGTGGCAACTaGAGTGCACGGGCAAGCCCTAATTCTACAAAGCAAAGGGTGGGA | + |
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Preference number: 1 (lower is better) Translates to: KKQASISSSTPESGN*SARASPNSTKQRVG Trigger: TCCCACCCTTTGCTTTGTAGAATTAGGGCTTGCCCGTGCACTCCAGTTGCCACTCTCTGGGGTAGAACTACTGATGCTTGCTTGCTTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR TCA 90 bp | CACGAGGACAAATTAAACAAGAGGACCCCCATGGTCTTCAACATCTaGTTGGCTGAGGATACAGTTAAAGCTGAGCCAGTGCTAACGGGG | + |
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Preference number: 1 (lower is better) Translates to: HEDKLNKRTPMVFNI*LAEDTVKAEPVLTG Trigger: CCCCGTTAGCACTGGCTCAGCTTTAACTGTATCCTCAGCCAATCAGATGTTGAAGACCATGGGGGTCCTCTTGTTTAATTTGTCCTCGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR GCA 90 bp | TGTCCTGTGGAAGCTGAGGAGCAGAAAGGCGTTGGTTACCGCCGCTaGCACAGCTTAAAAGAACCCGCAAGTTACACCATAAAAGAAATA | + |
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Preference number: 1 (lower is better) Translates to: CPVEAEEQKGVGYRR*HSLKEPASYTIKEI Trigger: TATTTCTTTTATGGTGTAACTTGCGGGTTCTTTTAAGCTGTGGCAGCGGCGGTAACCAACGCCTTTCTGCTCCTCAGCTTCCACAGGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CCA 90 bp | ATTTATCTGGTTGCTAGGTGGATTGGGCTTTTAAAGAAATATCACTaGGCCAGCTCTCCTTTGCGCCCTGCCATTTCTTGTGCTGACAAG | + |
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Preference number: 1 (lower is better) Translates to: IYLVARWIGLLKKYH*ASSPLRPAISCADK Trigger: CTTGTCAGCACAAGAAATGGCAGGGCGCAAAGGAGAGCTGGCCCAGTGATATTTCTTTAAAAGCCCAATCCACCTAGCAACCAGATAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR GCA 90 bp | TGTGCCATTACTCATGCAAATGATAAAACACTTCATGGCCAAAAATaGCAGAGCTTAAGCACCCTTTCGAAACAGAAGACTCACTCAGGC | + |
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Preference number: 1 (lower is better) Translates to: CAITHANDKTLHGQK*QSLSTLSKQKTHSG Trigger: GCCTGAGTGAGTCTTCTGTTTCGAAAGGGTGCTTAAGCTCTGGCATTTTTGGCCATGAAGTGTTTTATCATTTGCATGAGTAATGGCACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CCA 90 bp | TTTTCTGTGGCAGAGCAGGTGATACAACAGATTCTAAAGCCAGACTaGATCTTCACACAGCCTTGTTCTGACTTTTACTCTATTGAGGAC | + |
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Preference number: 1 (lower is better) Translates to: FSVAEQVIQQILKPD*IFTQPCSDFYSIED Trigger: GTCCTCAATAGAGTAAAAGTCAGAACAAGGCTGTGTGAAGATCCAGTCTGGCTTTAGAATCTGTTGTATCACCTGCTCTGCCACAGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CAA 90 bp | TCAACAGCAATGCCATCATCACGTCAAATGAGGTCACCCTGTAGCTaGGCGGTGGGGCCTTCAGGTTGCAGATGTACAAGGACTGAGGAC | + |
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Preference number: 2 (lower is better) Translates to: STAMPSSRQMRSPCS*AVGPSGCRCTRTED Trigger: GTCCTCAGTCCTTGTACATCTGCAACCTGAAGGCCCCACCGCCAAGCTACAGGGTGACCTCATTTGACGTGATGATGGCATTGCTGTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR TCA 90 bp | TACCGCCGCTGCCACAGCTTAAAAGAACCCGCAAGTTACACCATAAAAGAAATAGCTGGCCATCCGGCCTaGAGGTTGCAGTGCACCGTG | + |
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Preference number: 2 (lower is better) Translates to: YRRCHSLKEPASYTIKEIAGHPA*RLQCTV Trigger: CACGGTGCACTGCAACCTTCAGGCCGGATGGCCAGC...TATTTCTTTTATGGTGTAACTTGCGGGTTCTTTTAAGCTGTGGCAGCGGCGGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CAA 90 bp | GATACAGCAGACTGGATTTCCAAAGCAGGTGAGCCAAGGGTCCCATaGCAACCGTGGCCCTTAAAGGCAGCTTTCACGAACACACACACA | + |
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Preference number: 2 (lower is better) Translates to: DTADWISKAGEPRVP*QPWPLKAAFTNTHT Trigger: TGTGTGTGTGTTCGTGAAAGCTGCCTTTAAGGGCCACGGTTGCAATGGGACCCTTGGCTCACCTGCTTTGGAAATCCAGTCTGCTGTATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR CCA 90 bp | AAGAGCCTGCCCAGATGCCTGGCAAAAGCTCCCACTTCACACCTTGCCCGGCTTATTCTAAAGCCAGACTaGATCTTCACACAGCCTTGT | + |
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Preference number: 2 (lower is better) Translates to: KSLPRCLAKAPTSHLARLILKPD*IFTQPC Trigger: ACAAGGCTGTGTGAAGATCCAGTCTGGCTTTAGAAT...AAGCCGGGCAAGGTGTGAAGTGGGAGCTTTTGCCAGGCATCTGGGCAGGCTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR GCA 90 bp | CACGGGCAAGCCCTAATTCTACAAAGCAAAGGGTGGGAGTTCAAAGCACCTCTCACTGTCAGTCAGACTTaGACCAGAGGAACAGGGAGA | + |
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Preference number: 2 (lower is better) Translates to: HGQALILQSKGWEFKAPLTVSQT*TRGTGR Trigger: TCTCCCTGTTCCTCTGGTGCAAGTCTGACTGACAGT...GAGAGGTGCTTTGAACTCCCACCCTTTGCTTTGTAGAATTAGGGCTTGCCCGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR CCA 90 bp | GTACACGTGAGACTACGTGGTTACTTGCACGAGACTGTGGAGCCTGAGAACGCGTGTGATACAGCAGACTaGATTTCCAAAGCAGGTGAG | + |
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Preference number: 2 (lower is better) Translates to: VHVRLRGYLHETVEPENACDTAD*ISKAGE Trigger: CTCACCTGCTTTGGAAATCCAGTCTGCTGTATCACA...CGCGTTCTCAGGCTCCACAGTCTCGTGCAAGTAACCACGTAGTCTCACGTGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CAA 90 bp | AGGTGGATTGGGCTTTTAAAGAAATATCACTGGGCCAGCTCTCCTTaGCGCCCTGCCATTTCTTGTGCTGACAAGTGTCCTTTTCCTGTC | + |
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Preference number: 2 (lower is better) Translates to: RWIGLLKKYHWASSP*RPAISCADKCPFPV Trigger: GACAGGAAAAGGACACTTGTCAGCACAAGAAATGGCAGGGCGCAAAGGAGAGCTGGCCCAGTGATATTTCTTTAAAAGCCCAATCCACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR TCA 90 bp | TTACCGCCGCTGCCACAGCTTAAAAGAACCCGCAAGTTACACCATAAAAGAAATTTTGGCCTGGGGAAGTaGTGCCCAGGCACTATGAAG | + |
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Preference number: 2 (lower is better) Translates to: LPPLPQLKRTRKLHHKRNFGLGK*CPGTMK Trigger: CTTCATAGTGCCTGGGCATCACTTCCCCAGGCCAAA...ATTTCTTTTATGGTGTAACTTGCGGGTTCTTTTAAGCTGTGGCAGCGGCGGTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR GCA 90 bp | ACACACACGCACGCACGCACGCACAAACAAAGCCAGATGTCTGTACTGTCCTGTAACAGAGGGTGGGTGTaGGACTCAATTTTCATAAAC | + |
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Preference number: 2 (lower is better) Translates to: THTHARTHKQSQMSVLSCNRGWV*DSIFIN Trigger: GTTTATGAAAATTGAGTCGCACACCCACCCTCTGTT...ACAGGACAGTACAGACATCTGGCTTTGTTTGTGCGTGCGTGCGTGCGTGTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR CCA 90 bp | TTACCGCCGCTGCCACAGCTTAAAAGAACCCGCAAGTTACACCATAAAAGAAATGTCTGTACTGTCCTGTaGGGTGTCTGCAAACGGGAG | + |
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Preference number: 2 (lower is better) Translates to: LPPLPQLKRTRKLHHKRNVCTVL*GVCKRE Trigger: CTCCCGTTTGCAGACACCCCACAGGACAGTACAGAC...ATTTCTTTTATGGTGTAACTTGCGGGTTCTTTTAAGCTGTGGCAGCGGCGGTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR TCA 90 bp | CACGGGCAAGCCCTAATTCTACAAAGCAAAGGGTGGGAGTTCAAAGCACCTCTCCCTATAATAAAGCTGTaGTACAGCAGACTGGATTTC | + |
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Preference number: 2 (lower is better) Translates to: HGQALILQSKGWEFKAPLPIIKL*YSRLDF Trigger: GAAATCCAGTCTGCTGTATCACAGCTTTATTATAGG...GAGAGGTGCTTTGAACTCCCACCCTTTGCTTTGTAGAATTAGGGCTTGCCCGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR GCA 90 bp | TCAGGGCTCACCCGACACTGTTACAAAACAATAAGCCGTTGTTCATTTTTCAATAGGCTTCCCAGCACATaGTGGCTTGTCCTGTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: SGLTRHCYKTISRCSFFNRLPST*WLVLWK Trigger: CTTCCACAGGACAAGCCAGCATGTGCTGGGAAGCCT...ATTGAAAAATGAACAACGGCTTATTGTTTTGTAACAGTGTCGGGTGAGCCCTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR CCA 90 bp | TACCGCCGCTGCCACAGCTTAAAAGAACCCGCAAGTTACACCATAAAAGAAATACTGGACGGAATACACTaGCTAGAAGCTCCATCCGTT | + |
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Preference number: 2 (lower is better) Translates to: YRRCHSLKEPASYTIKEILDGIH*LEAPSV Trigger: AACGGATGGAGCTTCTAGCCAGTGTATTCCGTCCAG...TATTTCTTTTATGGTGTAACTTGCGGGTTCTTTTAAGCTGTGGCAGCGGCGGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR TCA 90 bp | AGACAAGTTAGAGGTCTCAGAGGTCTCACACTATTTCTACTTCAGCAGATGAAACAGATGTACAAGGACTaGGGACAGAAGTGGAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: RQVRGLRGLTLFLLQQMKQMYKD*GQKWRL Trigger: CAGCCTCCACTTCTGTCCTCAGTCCTTGTACATCTG...TTTCATCTGCTGAAGTAGAAATAGTGTGAGACCTCTGAGACCTCTAACTTGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR TCA 90 bp | TCAGGGCTCACCCGACACTGTTACAAAACAATAAGCCGTTGTTCATTTTTCAATGATGCCCAGGCACTATaGAGGGCTGGTGTAAACACT | + |
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Preference number: 2 (lower is better) Translates to: SGLTRHCYKTISRCSFFNDAQAL*RAGVNT Trigger: AGTGTTTACACCAGCCCTTCATAGTGCCTGGGCATC...ATTGAAAAATGAACAACGGCTTATTGTTTTGTAACAGTGTCGGGTGAGCCCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR GCA 90 bp | GTTTTCAAAATCTACTGCAGCCGTTCTAGAAACCCTGATCACGGTTTAATAGATAAGAGCCTGCCCAGATaGCTGGCAAAAGCTCCCACT | + |
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Preference number: 2 (lower is better) Translates to: VFKIYCSRSRNPDHGLIDKSLPR*LAKAPT Trigger: AGTGGGAGCTTTTGCCAGGCATCTGGGCAGGCTCTT...ATCTATTAAACCGTGATCAGGGTTTCTAGAACGGCTGCAGTAGATTTTGAAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR CCA 90 bp | GTTTTCAAAATCTACTGCAGCCGTTCTAGAAACCCTGATCACGGTTTAATAGATGGCTGGTGTAAACACTaGGCCTTAGGAAGAGCCTGC | + |
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Preference number: 2 (lower is better) Translates to: VFKIYCSRSRNPDHGLIDGWCKH*ALGRAC Trigger: GCAGGCTCTTCCTAAGGCCCAGTGTTTACACCAGCC...ATCTATTAAACCGTGATCAGGGTTTCTAGAACGGCTGCAGTAGATTTTGAAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR TCA 90 bp | TTGCGCCCTGCCATTTCTTGTGCTGACAAGTGTCCTTTTCCTGTCCTTGGGTTTTACTCTATTGAGGACTaGTATGTGAGTGAGTTTCAT | + |
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Preference number: 2 (lower is better) Translates to: LRPAISCADKCPFPVLGFYSIED*YVSEFH Trigger: ATGAAACTCACTCACATATCAGTCCTCAATAGAGTA...AAACCCAAGGACAGGAAAAGGACACTTGTCAGCACAAGAAATGGCAGGGCGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR TCA 90 bp | TTACCGCCGCTGCCACAGCTTAAAAGAACCCGCAAGTTACACCATAAAAGAAATTGCCATTTCTTGTGCTaGCAAGTGTCCTTTTCCTGT | + |
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Preference number: 2 (lower is better) Translates to: LPPLPQLKRTRKLHHKRNCHFLC*QVSFSC Trigger: ACAGGAAAAGGACACTTGTCAGCACAAGAAATGGCA...ATTTCTTTTATGGTGTAACTTGCGGGTTCTTTTAAGCTGTGGCAGCGGCGGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR GCA 90 bp | TACCGCCGCTGCCACAGCTTAAAAGAACCCGCAAGTTACACCATAAAAGAAATATCCTACAAACTGCAGTaGAGTAGACAAGGTTACTGT | + |
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Preference number: 2 (lower is better) Translates to: YRRCHSLKEPASYTIKEISYKLQ*SRQGYC Trigger: ACAGTAACCTTGTCTACTGCACTGCAGTTTGTAGGA...TATTTCTTTTATGGTGTAACTTGCGGGTTCTTTTAAGCTGTGGCAGCGGCGGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR GCA 90 bp | AGACAAGTTAGAGGTCTCAGAGGTCTCACACTATTTCTACTTCAGCAGATGAAACTTCATGGCCAAAAATaGCAGAGCTTAAGCACCCTT | + |
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Preference number: 2 (lower is better) Translates to: RQVRGLRGLTLFLLQQMKLHGQK*QSLSTL Trigger: AAGGGTGCTTAAGCTCTGGCATTTTTGGCCATGAAG...TTTCATCTGCTGAAGTAGAAATAGTGTGAGACCTCTGAGACCTCTAACTTGTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR CCA 90 bp | AGACAAGTTAGAGGTCTCAGAGGTCTCACACTATTTCTACTTCAGCAGATGAAATCCATTAACAGAGGGTaGGTGTGCGACTCAATTTTC | + |
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Preference number: 2 (lower is better) Translates to: RQVRGLRGLTLFLLQQMKSINRG*VCDSIF Trigger: GAAAATTGAGTCGCACACCCACCCTCTGTTAATGGA...TTTCATCTGCTGAAGTAGAAATAGTGTGAGACCTCTGAGACCTCTAACTTGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR CCA 90 bp | GTTTTCAAAATCTACTGCAGCCGTTCTAGAAACCCTGATCACGGTTTAATAGATCGTGTGGGTGTAACATaGCTTCATTTTCCTTCTGCG | + |
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Preference number: 2 (lower is better) Translates to: VFKIYCSRSRNPDHGLIDRVGVT*LHFPSA Trigger: CGCAGAAGGAAAATGAAGCCATGTTACACCCACACG...ATCTATTAAACCGTGATCAGGGTTTCTAGAACGGCTGCAGTAGATTTTGAAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR CCA 90 bp | GTTTTCAAAATCTACTGCAGCCGTTCTAGAAACCCTGATCACGGTTTAATAGATCTACAAAGCAAAGGGTaGGAGTTCAAAGCACCTCTC | + |
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Preference number: 2 (lower is better) Translates to: VFKIYCSRSRNPDHGLIDLQSKG*EFKAPL Trigger: GAGAGGTGCTTTGAACTCCCACCCTTTGCTTTGTAG...ATCTATTAAACCGTGATCAGGGTTTCTAGAACGGCTGCAGTAGATTTTGAAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR TCA 90 bp | AGACAAGTTAGAGGTCTCAGAGGTCTCACACTATTTCTACTTCAGCAGATGAAAGGACTGATATGTGAGTaGGTTTCATGTCACGAATTA | + |
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Preference number: 2 (lower is better) Translates to: RQVRGLRGLTLFLLQQMKGLICE*VSCHEL Trigger: TAATTCGTGACATGAAACTCACTCACATATCAGTCC...TTTCATCTGCTGAAGTAGAAATAGTGTGAGACCTCTGAGACCTCTAACTTGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR-3UTR TCA 90 bp | GTTTTCAAAATCTACTGCAGCCGTTCTAGAAACCCTGATCACGGTTTAATAGATTTTCATAAACCCCTATaGGAGACTATTTTCTGTGGC | + |
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Preference number: 2 (lower is better) Translates to: VFKIYCSRSRNPDHGLIDFHKPL*ETIFCG Trigger: GCCACAGAAAATAGTCTCTCATAGGGGTTTATGAAA...ATCTATTAAACCGTGATCAGGGTTTCTAGAACGGCTGCAGTAGATTTTGAAAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CCA 72 bp | TGCACCAGAGGAACAGGGAGAGGGCGTGGTACAGTTTaGCCTGGGGAAGTGATGCCCAGGCACTATGAAGGG | + |
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Preference number: 3 (lower is better) Translates to: CTRGTGRGRGTV*PGEVMPRHYEG Trigger: CCCTTCATAGTGCCTGGGCATCACTTCCCCAGGCCAAACTGTACCACGCCCTCTCCCTGTTCCTCTGGTGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR CCA 72 bp | CAGTCAGACTTGCACCAGAGGAACAGGGAGAGGGCGTaGTACAGTTTGGCCTGGGGAAGTGATGCCCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: QSDLHQRNRERA*YSLAWGSDAQA Trigger: TGCCTGGGCATCACTTCCCCAGGCCAAACTGTACCACGCCCTCTCCCTGTTCCTCTGGTGCAAGTCTGACTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR TCA 72 bp | GAGACTACGTGGTTACTTGCACGAGACTGTGGAGCCTaGGAACGCGTAGGCCCTAAGTGCCTCCAGGCTCAC | + |
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Preference number: 3 (lower is better) Translates to: ETTWLLARDCGA*ERVGPKCLQAH Trigger: GTGAGCCTGGAGGCACTTAGGGCCTACGCGTTCTCAGGCTCCACAGTCTCGTGCAAGTAACCACGTAGTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR TCA 72 bp | CAGGGAGAGGGCGTGGTACAGTTTGGCCTGGGGAAGTaGTGCCCAGGCACTATGAAGGGCTGGTGTAAACAC | + |
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Preference number: 3 (lower is better) Translates to: QGEGVVQFGLGK*CPGTMKGWCKH Trigger: GTGTTTACACCAGCCCTTCATAGTGCCTGGGCATCACTTCCCCAGGCCAAACTGTACCACGCCCTCTCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
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| 3UTR GCA 72 bp | AGGTCACCCTGTAGCTTGGCGGTGGGGCCTTCAGGTTaGAGATGTACAAGGACTGAGGACAGAAGTGGAGGC | + |
|
Preference number: 3 (lower is better) Translates to: RSPCSLAVGPSG*RCTRTEDRSGG Trigger: GCCTCCACTTCTGTCCTCAGTCCTTGTACATCTGCAACCTGAAGGCCCCACCGCCAAGCTACAGGGTGACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CCA 72 bp | CCTAGAAGGCTTCCCAGCACATGCTGGCTTGTCCTGTaGAAGCTGAGGAGCAGAAAGGCGTTGGTTACCGCC | + |
|
Preference number: 3 (lower is better) Translates to: PRRLPSTCWLVL*KLRSRKALVTA Trigger: GGCGGTAACCAACGCCTTTCTGCTCCTCAGCTTCCACAGGACAAGCCAGCATGTGCTGGGAAGCCTTCTAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR TCA 72 bp | GCTTCACACCCTTTCCATGTTTGCATGGGCCATCCGTaGCGTGAGGCTGTGGGATCTGTGCAGCCCCTTCTA | + |
|
Preference number: 3 (lower is better) Translates to: ASHPFHVCMGHP*REAVGSVQPLL Trigger: TAGAAGGGGCTGCACAGATCCCACAGCCTCACGTCACGGATGGCCCATGCAAACATGGAAAGGGTGTGAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR GCA 72 bp | GCCCAGATGCCTGGCAAAAGCTCCCACTTCACACCTTaGCCGGCTTTCTCAGGCTTCACACCCTTTCCATGT | + |
|
Preference number: 3 (lower is better) Translates to: AQMPGKSSHFTP*PAFSGFTPFPC Trigger: ACATGGAAAGGGTGTGAAGCCTGAGAAAGCCGGGCAAGGTGTGAAGTGGGAGCTTTTGCCAGGCATCTGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CCA 72 bp | AAACACTGGGCCTTAGGAAGAGCCTGCCCAGATGCCTaGCAAAAGCTCCCACTTCACACCTTGCCCGGCTTT | + |
|
Preference number: 3 (lower is better) Translates to: KHWALGRACPDA*QKLPLHTLPGF Trigger: AAAGCCGGGCAAGGTGTGAAGTGGGAGCTTTTGCCAGGCATCTGGGCAGGCTCTTCCTAAGGCCCAGTGTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR TCA 72 bp | CTGTCACCTCAACAGCAATGCCATCATCACGTCAAATaGGGTCACCCTGTAGCTTGGCGGTGGGGCCTTCAG | + |
|
Preference number: 3 (lower is better) Translates to: LSPQQQCHHHVK*GHPVAWRWGLQ Trigger: CTGAAGGCCCCACCGCCAAGCTACAGGGTGACCTCATTTGACGTGATGATGGCATTGCTGTTGAGGTGACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR TCA 72 bp | ACACCCTTTCCATGTTTGCATGGGCCATCCGTGACGTaGGGCTGTGGGATCTGTGCAGCCCCTTCTAATACG | + |
|
Preference number: 3 (lower is better) Translates to: TPFPCLHGPSVT*GCGICAAPSNT Trigger: CGTATTAGAAGGGGCTGCACAGATCCCACAGCCTCACGTCACGGATGGCCCATGCAAACATGGAAAGGGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR GCA 72 bp | CGGTGTACAGAAACACCTAGAAGGCTTCCCAGCACATaGTGGCTTGTCCTGTGGAAGCTGAGGAGCAGAAAG | + |
|
Preference number: 3 (lower is better) Translates to: RCTETPRRLPST*WLVLWKLRSRK Trigger: CTTTCTGCTCCTCAGCTTCCACAGGACAAGCCAGCATGTGCTGGGAAGCCTTCTAGGTGTTTCTGTACACCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CCA 72 bp | CACGCACAAACAAAGCCAGATGTCTGTACTGTCCTGTaGGGTGTCTGCAAACGGGAGCGTGTGGGTGTAACA | + |
|
Preference number: 3 (lower is better) Translates to: HAQTKPDVCTVL*GVCKRERVGVT Trigger: TGTTACACCCACACGCTCCCGTTTGCAGACACCCCACAGGACAGTACAGACATCTGGCTTTGTTTGTGCGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CCA 72 bp | TCCAAAGCAGGTGAGCCAAGGGTCCCATTGCAACCGTaGCCCTTAAAGGCAGCTTTCACGAACACACACACA | + |
|
Preference number: 3 (lower is better) Translates to: SKAGEPRVPLQP*PLKAAFTNTHT Trigger: TGTGTGTGTGTTCGTGAAAGCTGCCTTTAAGGGCCACGGTTGCAATGGGACCCTTGGCTCACCTGCTTTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CCA 72 bp | TGTACAGAAACACCTAGAAGGCTTCCCAGCACATGCTaGCTTGTCCTGTGGAAGCTGAGGAGCAGAAAGGCG | + |
|
Preference number: 3 (lower is better) Translates to: CTETPRRLPSTC*LVLWKLRSRKA Trigger: CGCCTTTCTGCTCCTCAGCTTCCACAGGACAAGCCAGCATGTGCTGGGAAGCCTTCTAGGTGTTTCTGTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR GCA 72 bp | ACAAAGCCAGATGTCTGTACTGTCCTGTGGGGTGTCTaGAAACGGGAGCGTGTGGGTGTAACATGGCTTCAT | + |
|
Preference number: 3 (lower is better) Translates to: TKPDVCTVLWGV*KRERVGVTWLH Trigger: ATGAAGCCATGTTACACCCACACGCTCCCGTTTGCAGACACCCCACAGGACAGTACAGACATCTGGCTTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR GCA 72 bp | ATCTCAGCACCATCATGCACAACTGTCAGTCAGACTTaGACCAGAGGAACAGGGAGAGGGCGTGGTACAGTT | + |
|
Preference number: 3 (lower is better) Translates to: ISAPSCTTVSQT*TRGTGRGRGTV Trigger: AACTGTACCACGCCCTCTCCCTGTTCCTCTGGTGCAAGTCTGACTGACAGTTGTGCATGATGGTGCTGAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR GCA 72 bp | GAAGCTGAGGAGCAGAAAGGCGTTGGTTACCGCCGCTaGCACAGCTTAAAAGAACCCGCAAGTTACACCATA | + |
|
Preference number: 3 (lower is better) Translates to: EAEEQKGVGYRR*HSLKEPASYTI Trigger: TATGGTGTAACTTGCGGGTTCTTTTAAGCTGTGGCAGCGGCGGTAACCAACGCCTTTCTGCTCCTCAGCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR-3UTR CAA 90 bp | TCACTCAGGCAGTGTGTGCCAGCCACTCCGGCCATCAGGGCGGAATGCACACATCGATTAGGCATCAATTaGAAAACTAGAAACGTGTCA | + |
|
Preference number: 3 (lower is better) Translates to: SLRQCVPATPAIRAECTHRLGIN*KTRNVS Trigger: TGACACGTTTCTAGTTTTCAAATTGATGCCTAATCG...ATGTGTGCATTCCGCCCTGATGGCCGGAGTGGCTGGCACACACTGCCTGAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR TCA 72 bp | GGCCAGCTCTCCTTTGCGCCCTGCCATTTCTTGTGCTaGCAAGTGTCCTTTTCCTGTCCTTGGGTTTTTATC | + |
|
Preference number: 3 (lower is better) Translates to: GQLSFAPCHFLC*QVSFSCPWVFI Trigger: GATAAAAACCCAAGGACAGGAAAAGGACACTTGTCAGCACAAGAAATGGCAGGGCGCAAAGGAGAGCTGGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CCA 72 bp | TGGGGTGTCTGCAAACGGGAGCGTGTGGGTGTAACATaGCTTCATTTTCCTTCTGCGATGGTTAATCGGCTA | + |
|
Preference number: 3 (lower is better) Translates to: WGVCKRERVGVT*LHFPSAMVNRL Trigger: TAGCCGATTAACCATCGCAGAAGGAAAATGAAGCCATGTTACACCCACACGCTCCCGTTTGCAGACACCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CCA 72 bp | GTGCACGGGCAAGCCCTAATTCTACAAAGCAAAGGGTaGGAGTTCAAAGCACCTCTCACGGTGTACAGAAAC | + |
|
Preference number: 3 (lower is better) Translates to: VHGQALILQSKG*EFKAPLTVYRN Trigger: GTTTCTGTACACCGTGAGAGGTGCTTTGAACTCCCACCCTTTGCTTTGTAGAATTAGGGCTTGCCCGTGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR-3UTR CAA 90 bp | TTGCGCCCTGCCATTTCTTGTGCTGACAAGTGTCCTTTTCCTGTCCTTGGGTTTCCAGCTACTAAATACTaGGGGTGGGGGAGATTCCAA | + |
|
Preference number: 3 (lower is better) Translates to: LRPAISCADKCPFPVLGFPATKY*GWGRFQ Trigger: TTGGAATCTCCCCCACCCCAAGTATTTAGTAGCTGG...AAACCCAAGGACAGGAAAAGGACACTTGTCAGCACAAGAAATGGCAGGGCGCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR-3UTR CAA 90 bp | TACCGCCGCTGCCACAGCTTAAAAGAACCCGCAAGTTACACCATAAAAGAAATATGGGCCAGCTCTCCTTaGCGCCCTGCCATTTCTTGT | + |
|
Preference number: 3 (lower is better) Translates to: YRRCHSLKEPASYTIKEIWASSP*RPAISC Trigger: ACAAGAAATGGCAGGGCGCAAAGGAGAGCTGGCCCA...TATTTCTTTTATGGTGTAACTTGCGGGTTCTTTTAAGCTGTGGCAGCGGCGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR GCA 72 bp | CTAGAAACGTGTCAGCTGAGCAGAGTCTCCCTGCAATaGTGTTTTACTGGACGGAATACACTGGCTAGAAGC | + |
|
Preference number: 3 (lower is better) Translates to: LETCQLSRVSLQ*CFTGRNTLARS Trigger: GCTTCTAGCCAGTGTATTCCGTCCAGTAAAACAGCATTGCAGGGAGACTCTGCTCAGCTGACACGTTTCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR TCA 72 bp | GCCATCAGGGCGGAATGCACACATGAAAAGCTTCCGTaGTTCTCCAGGAAAGGGAAGATAAGAGGTTTTGTG | + |
|
Preference number: 3 (lower is better) Translates to: AIRAECTHEKLP*FSRKGKIRGFV Trigger: CACAAAACCTCTTATCTTCCCTTTCCTGGAGAATCACGGAAGCTTTTCATGTGTGCATTCCGCCCTGATGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CCA 72 bp | TCTCCCTGCAATGCTGTTTTACTGGACGGAATACACTaGCTAGAAGCTCCATCCGTTCCTGACTTCAGTACT | + |
|
Preference number: 3 (lower is better) Translates to: SPCNAVLLDGIH*LEAPSVPDFST Trigger: AGTACTGAAGTCAGGAACGGATGGAGCTTCTAGCCAGTGTATTCCGTCCAGTAAAACAGCATTGCAGGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR-3UTR CAA 90 bp | TCAGGGCTCACCCGACACTGTTACAAAACAATAAGCCGTTGTTCATTTTTCAATGAGCCAAGGGTCCCATaGCAACCGTGGCCCTTAAAG | + |
|
Preference number: 3 (lower is better) Translates to: SGLTRHCYKTISRCSFFNEPRVP*QPWPLK Trigger: CTTTAAGGGCCACGGTTGCAATGGGACCCTTGGCTC...ATTGAAAAATGAACAACGGCTTATTGTTTTGTAACAGTGTCGGGTGAGCCCTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR-3UTR CAA 90 bp | TCAGGGCTCACCCGACACTGTTACAAAACAATAAGCCGTTGTTCATTTTTCAATCTCCCACTTCACACCTaGCCCGGCTTTCTCAGGCTT | + |
|
Preference number: 3 (lower is better) Translates to: SGLTRHCYKTISRCSFFNLPLHT*PGFLRL Trigger: AAGCCTGAGAAAGCCGGGCAAGGTGTGAAGTGGGAG...ATTGAAAAATGAACAACGGCTTATTGTTTTGTAACAGTGTCGGGTGAGCCCTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CCA 72 bp | GCAGAGCAGGTGATACAACAGATTCTAAAGCCAGACTaGATCTTCACACAGCCTTGTTCTGACTTTTACTCT | + |
|
Preference number: 3 (lower is better) Translates to: AEQVIQQILKPD*IFTQPCSDFYS Trigger: AGAGTAAAAGTCAGAACAAGGCTGTGTGAAGATCCAGTCTGGCTTTAGAATCTGTTGTATCACCTGCTCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CCA 72 bp | GTAAATAAAGACCATCCTCTCTCCATTAACAGAGGGTaGGTGTGCGACTCAATTTTCATAAACCCCTATGAG | + |
|
Preference number: 3 (lower is better) Translates to: VNKDHPLSINRG*VCDSIFINPYE Trigger: CTCATAGGGGTTTATGAAAATTGAGTCGCACACCCACCCTCTGTTAATGGAGAGAGGATGGTCTTTATTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR-3UTR CAA 90 bp | GTTTTCAAAATCTACTGCAGCCGTTCTAGAAACCCTGATCACGGTTTAATAGATGGCTCTCCATCTCAGTaGCTTCTGTCTTGTTCAGTA | + |
|
Preference number: 3 (lower is better) Translates to: VFKIYCSRSRNPDHGLIDGSPSQ*LLSCSV Trigger: TACTGAACAAGACAGAAGCAACTGAGATGGAGAGCC...ATCTATTAAACCGTGATCAGGGTTTCTAGAACGGCTGCAGTAGATTTTGAAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CCA 72 bp | GTCAGTTGTATTAGAGTCCAACAATTAACTGTGAACTaGATCTCTGGGGAACCCCAATCAATAACAGTAAGT | + |
|
Preference number: 3 (lower is better) Translates to: VSCIRVQQLTVN*ISGEPQSITVS Trigger: ACTTACTGTTATTGATTGGGGTTCCCCAGAGATCCAGTTCACAGTTAATTGTTGGACTCTAATACAACTGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR-3UTR CAA 90 bp | TCAGGGCTCACCCGACACTGTTACAAAACAATAAGCCGTTGTTCATTTTTCAATACGCAGTATCATCAATaGCTGTTCATTATGAGATTC | + |
|
Preference number: 3 (lower is better) Translates to: SGLTRHCYKTISRCSFFNTQYHQ*LFIMRF Trigger: GAATCTCATAATGAACAGCAATTGATGATACTGCGT...ATTGAAAAATGAACAACGGCTTATTGTTTTGTAACAGTGTCGGGTGAGCCCTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR TCA 72 bp | TTGTTAGTGATCATAGGAATTCTGGTTTCTCTCTCATaGTTATTTTTAGTTTACACAACAGTGGCTTCTGTC | + |
|
Preference number: 3 (lower is better) Translates to: LLVIIGILVSLS*LFLVYTTVASV Trigger: GACAGAAGCCACTGTTGTGTAAACTAAAAATAATCATGAGAGAGAAACCAGAATTCCTATGATCACTAACAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| CDS-3UTR GCA 90 bp | AAGAGCCTGCCCAGATGCCTGGCAAAAGCTCCCACTTCACACCTTGCCCGGCTTCTGCCGCACAATTTCTaGAAAGAGCTCATCCACCAT | + |
|
Preference number: 4 (lower is better) Translates to: KSLPRCLAKAPTSHLARLLPHNF*KELIHH Trigger: ATGGTGGATGAGCTCTTTGCAGAAATTGTGCGGCAG...AAGCCGGGCAAGGTGTGAAGTGGGAGCTTTTGCCAGGCATCTGGGCAGGCTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CAA 72 bp | ATGCCATCATCACGTCAAATGAGGTCACCCTGTAGCTaGGCGGTGGGGCCTTCAGGTTGCAGATGTACAAGG | + |
|
Preference number: 4 (lower is better) Translates to: MPSSRQMRSPCS*AVGPSGCRCTR Trigger: CCTTGTACATCTGCAACCTGAAGGCCCCACCGCCAAGCTACAGGGTGACCTCATTTGACGTGATGATGGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CAA 72 bp | GACTGGATTTCCAAAGCAGGTGAGCCAAGGGTCCCATaGCAACCGTGGCCCTTAAAGGCAGCTTTCACGAAC | + |
|
Preference number: 4 (lower is better) Translates to: DWISKAGEPRVP*QPWPLKAAFTN Trigger: GTTCGTGAAAGCTGCCTTTAAGGGCCACGGTTGCAATGGGACCCTTGGCTCACCTGCTTTGGAAATCCAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| CDS-3UTR GCA 90 bp | AGACAAGTTAGAGGTCTCAGAGGTCTCACACTATTTCTACTTCAGCAGATGAAACGGTCAGGGCGGATTTaGCTACCCCGCCCGAGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: RQVRGLRGLTLFLLQQMKRSGRI*LPRPSP Trigger: TGGGCTCGGGCGGGGTAGGCAAATCCGCCCTGACCG...TTTCATCTGCTGAAGTAGAAATAGTGTGAGACCTCTGAGACCTCTAACTTGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| CDS-3UTR TCA 90 bp | TTGCGCCCTGCCATTTCTTGTGCTGACAAGTGTCCTTTTCCTGTCCTTGGGTTTGGTCGTATTTCTCAATaGAGGTGCCGGTCACGAACT | + |
|
Preference number: 4 (lower is better) Translates to: LRPAISCADKCPFPVLGFGRISQ*RCRSRT Trigger: AGTTCGTGACCGGCACCTTCATTGAGAAATACGACC...AAACCCAAGGACAGGAAAAGGACACTTGTCAGCACAAGAAATGGCAGGGCGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CAA 72 bp | GGGCTTTTAAAGAAATATCACTGGGCCAGCTCTCCTTaGCGCCCTGCCATTTCTTGTGCTGACAAGTGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: GLLKKYHWASSP*RPAISCADKCP Trigger: AGGACACTTGTCAGCACAAGAAATGGCAGGGCGCAAAGGAGAGCTGGCCCAGTGATATTTCTTTAAAAGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| CDS-3UTR GCA 90 bp | AGACAAGTTAGAGGTCTCAGAGGTCTCACACTATTTCTACTTCAGCAGATGAAAGTGCCGGTCACGAACTaGACGGTCAGGGCGGATTTG | + |
|
Preference number: 4 (lower is better) Translates to: RQVRGLRGLTLFLLQQMKVPVTN*TVRADL Trigger: CAAATCCGCCCTGACCGTGCAGTTCGTGACCGGCAC...TTTCATCTGCTGAAGTAGAAATAGTGTGAGACCTCTGAGACCTCTAACTTGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| CDS-3UTR GCA 90 bp | TTACCGCCGCTGCCACAGCTTAAAAGAACCCGCAAGTTACACCATAAAAGAAATCCACCTCGATCTCCTTaGGGTAGAAGTCCTCGATGG | + |
|
Preference number: 4 (lower is better) Translates to: LPPLPQLKRTRKLHHKRNPPRSP*GRSPRW Trigger: CCATCGAGGACTTCTACCGCAAGGAGATCGAGGTGG...ATTTCTTTTATGGTGTAACTTGCGGGTTCTTTTAAGCTGTGGCAGCGGCGGTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| CDS-3UTR CCA 90 bp | AGACAAGTTAGAGGTCTCAGAGGTCTCACACTATTTCTACTTCAGCAGATGAAAAGGCGCGGCCTTCGTTaGAGGACACTTCTCTCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: RQVRGLRGLTLFLLQQMKRRGLR*RTLLSH Trigger: GTGAGAGAGAAGTGTCCTCCAACGAAGGCCGCGCCT...TTTCATCTGCTGAAGTAGAAATAGTGTGAGACCTCTGAGACCTCTAACTTGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| CDS-3UTR TCA 90 bp | AGACAAGTTAGAGGTCTCAGAGGTCTCACACTATTTCTACTTCAGCAGATGAAATGTTCCCGACCAGGATaGCTGGAACCTTCTCATACC | + |
|
Preference number: 4 (lower is better) Translates to: RQVRGLRGLTLFLLQQMKCSRPG*LEPSHT Trigger: GGTATGAGAAGGTTCCAGTCATCCTGGTCGGGAACA...TTTCATCTGCTGAAGTAGAAATAGTGTGAGACCTCTGAGACCTCTAACTTGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| CDS-3UTR CCA 90 bp | AGACAAGTTAGAGGTCTCAGAGGTCTCACACTATTTCTACTTCAGCAGATGAAAACAGGCAGAACAGCATaGGTCATCTTTGTCAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: RQVRGLRGLTLFLLQQMKTGRTA*VIFVRL Trigger: CAGCCTGACAAAGATGACCCATGCTGTTCTGCCTGT...TTTCATCTGCTGAAGTAGAAATAGTGTGAGACCTCTGAGACCTCTAACTTGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| 3UTR CAA 72 bp | CCCTATCTTGTAAACTTAAAGCCAGCTACTAAATACTaGGGGTGGGGGAGATTCCAATGGCTTGTAAGAGAC | + |
|
Preference number: 4 (lower is better) Translates to: PYLVNLKPATKY*GWGRFQWLVRD Trigger: GTCTCTTACAAGCCATTGGAATCTCCCCCACCCCAAGTATTTAGTAGCTGGCTTTAAGTTTACAAGATAGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| CDS-3UTR GCA 90 bp | GTTTTCAAAATCTACTGCAGCCGTTCTAGAAACCCTGATCACGGTTTAATAGATTTTGTCAGGCTGAGCTaGATAGTTCATCTGCCGCAC | + |
|
Preference number: 4 (lower is better) Translates to: VFKIYCSRSRNPDHGLIDFVRLS*IVHLPH Trigger: GTGCGGCAGATGAACTATGCAGCTCAGCCTGACAAA...ATCTATTAAACCGTGATCAGGGTTTCTAGAACGGCTGCAGTAGATTTTGAAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| CDS-3UTR CAA 90 bp | TCACTCAGGCAGTGTGTGCCAGCCACTCCGGCCATCAGGGCGGAATGCACACATTCATCCACCATTGTTTaGCTCTTAGCAGAAGTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: SLRQCVPATPAIRAECTHSSTIV*LLAEVS Trigger: GGAGACTTCTGCTAAGAGCAAAACAATGGTGGATGA...ATGTGTGCATTCCGCCCTGATGGCCGGAGTGGCTGGCACACACTGCCTGAGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||
| CDS-3UTR CAA 90 bp | TTGCGCCCTGCCATTTCTTGTGCTGACAAGTGTCCTTTTCCTGTCCTTGGGTTTAAGGCGCGGCCTTCGTaGGAGGACACTTCTCTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: LRPAISCADKCPFPVLGFKARPS*EDTSLS Trigger: TGAGAGAGAAGTGTCCTCCAACGAAGGCCGCGCCTT...AAACCCAAGGACAGGAAAAGGACACTTGTCAGCACAAGAAATGGCAGGGCGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062117.14 |
||