Pregenerated sensors for RAP1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052681

Ensembl transcript IDs: ENSMUST00000064667.9, ENSMUST00000220214.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	CAAAGAAAATGGGGGCGAGAGAGACAGCGCAATGGTGCAGAGCACTaGATACTTCCCAGAGGACTCAGGTTCCATTCTCAGCACTACACA	+
Preference number: 1 (lower is better) Translates to: QRKWGRERQRNGAEH*ILPRGLRFHSQHYT Trigger: TGTGTAGTGCTGAGAATGGAACCTGAGTCCTCTGGGAAGTATCCAGTGCTCTGCACCATTGCGCTGTCTCTCTCGCCCCCATTTTCTTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220214.2
3UTR CAA 90 bp	CCTTCCTCCTTTCCCCACAGAGTTACTGAACACCAGCCAAAGGCATaGTCCCTAAGTAATACTGCTTGCTTTATAACATTCTTTCTCAAA	+
Preference number: 2 (lower is better) Translates to: PSSFPHRVTEHQPKA*SLSNTACFITFFLK Trigger: TTTGAGAAAGAATGTTATAAAGCAAGCAGTATTACTTAGGGACAATGCCTTTGGCTGGTGTTCAGTAACTCTGTGGGGAAAGGAGGAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064667.9
CDS-3UTR GCA 90 bp	ATCCATAGTGCAGTACCCAAAGTATTTGAATCCTTCCTCCTTTCCCCACAGAGTCTCATGGCTGTGAATTaGTCCGTTCCTGCAGTGTCC	+
Preference number: 4 (lower is better) Translates to: IHSAVPKVFESFLLSPQSLMAVN*SVPAVS Trigger: GGACACTGCAGGAACGGAGCAATTCACAGCCATGAG...ACTCTGTGGGGAAAGGAGGAAGGATTCAAATACTTTGGGTACTGCACTATGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064667.9
CDS-3UTR TCA 90 bp	ATCCATAGTGCAGTACCCAAAGTATTTGAATCCTTCCTCCTTTCCCCACAGAGTATGTCGACTGTGCTGTaGTGGAGTAAACCAGAGCGA	+
Preference number: 4 (lower is better) Translates to: IHSAVPKVFESFLLSPQSMSTVL*WSKPER Trigger: TCGCTCTGGTTTACTCCATCACAGCACAGTCGACAT...ACTCTGTGGGGAAAGGAGGAAGGATTCAAATACTTTGGGTACTGCACTATGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064667.9
3UTR CAA 72 bp	TTTCCCCACAGAGTTACTGAACACCAGCCAAAGGCATaGTCCCTAAGTAATACTGCTTGCTTTATAACATTC	+
Preference number: 4 (lower is better) Translates to: FPHRVTEHQPKA*SLSNTACFITF Trigger: GAATGTTATAAAGCAAGCAGTATTACTTAGGGACAATGCCTTTGGCTGGTGTTCAGTAACTCTGTGGGGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064667.9
CDS-3UTR CAA 90 bp	ATCCATAGTGCAGTACCCAAAGTATTTGAATCCTTCCTCCTTTCCCCACAGAGTCCTCATGGCTGTGAATaGCTCCGTTCCTGCAGTGTC	+
Preference number: 5 (lower is better) Translates to: IHSAVPKVFESFLLSPQSPHGCE*LRSCSV Trigger: GACACTGCAGGAACGGAGCAATTCACAGCCATGAGG...ACTCTGTGGGGAAAGGAGGAAGGATTCAAATACTTTGGGTACTGCACTATGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064667.9
CDS-3UTR CAA 90 bp	ATCCATAGTGCAGTACCCAAAGTATTTGAATCCTTCCTCCTTTCCCCACAGAGTAGTTGTTCCACTGTCTaGCTAGGTTCTGACCTTGTT	+
Preference number: 5 (lower is better) Translates to: IHSAVPKVFESFLLSPQSSCSTV*LGSDLV Trigger: AACAAGGTCAGAACCTAGCAAGACAGTGGAACAACT...ACTCTGTGGGGAAAGGAGGAAGGATTCAAATACTTTGGGTACTGCACTATGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064667.9

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