Pregenerated sensors for RAP1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068798Ensembl transcript IDs: ENSMUST00000090678.11, ENSMUST00000199969.5
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAATCTGCTTTCTTCTCCTGTATGCACCTGGCCAACAGGCCATTTaGTTTCTCTTTCTTCATGGAGAACATACAGCAGTATCGCCCTGG | + |
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Preference number: 1 (lower is better) Translates to: AICFLLLYAPGQQAI*FLFLHGEHTAVSPW Trigger: CCAGGGCGATACTGCTGTATGTTCTCCATGAAGAAAGAGAAAGCAAATGGCCTGTTGGCCAGGTGCATACAGGAGAAGAAAGCAGATTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CCA 90 bp | CCTGTATGCACCTGGCCAACAGGCCATTTGCTTTCTCTTTCTTCATaGAGAACATACAGCAGTATCGCCCTGGCTCCATGTCCTACATAT | + |
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Preference number: 1 (lower is better) Translates to: PVCTWPTGHLLSLSS*RTYSSIALAPCPTY Trigger: ATATGTAGGACATGGAGCCAGGGCGATACTGCTGTATGTTCTCCATGAAGAAAGAGAAAGCAAATGGCCTGTTGGCCAGGTGCATACAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR GCA 90 bp | CAGCCAGCAAGCTGCTGTATCCATCTTCACAGCATTCCTCTACACTaGTCATACAGTCAAGTCACACGTCCCTTTTTGTGTTCTGACTTG | + |
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Preference number: 1 (lower is better) Translates to: QPASCCIHLHSIPLH*SYSQVTRPFLCSDL Trigger: CAAGTCAGAACACAAAAAGGGACGTGTGACTTGACTGTATGAGCAGTGTAGAGGAATGCTGTGAAGATGGATACAGCAGCTTGCTGGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR GCA 90 bp | CTTGATTTTCAGGGACAAGGCACAGGGTTTCCTAAGCTTGCAATCTaGTTTCTTCTCCTGTATGCACCTGGCCAACAGGCCATTTGCTTT | + |
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Preference number: 1 (lower is better) Translates to: LDFQGQGTGFPKLAI*FLLLYAPGQQAICF Trigger: AAAGCAAATGGCCTGTTGGCCAGGTGCATACAGGAGAAGAAAGCAGATTGCAAGCTTAGGAAACCCTGTGCCTTGTCCCTGAAAATCAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR TCA 90 bp | TCTACACTGCTCATACAGTCAAGTCACACGTCCCTTTTTGTGTTCTaGCTTGCAACCACTTCCCTCAAGTTCTTCCATCTACTAGAGAGC | + |
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Preference number: 1 (lower is better) Translates to: STLLIQSSHTSLFVF*LATTSLKFFHLLES Trigger: GCTCTCTAGTAGATGGAAGAACTTGAGGGAAGTGGTTGCAAGTCAGAACACAAAAAGGGACGTGTGACTTGACTGTATGAGCAGTGTAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR GCA 90 bp | ACTGCTCATACAGTCAAGTCACACGTCCCTTTTTGTGTTCTGACTTaGAACCACTTCCCTCAAGTTCTTCCATCTACTAGAGAGCAAGTT | + |
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Preference number: 1 (lower is better) Translates to: TAHTVKSHVPFCVLT*NHFPQVLPSTREQV Trigger: AACTTGCTCTCTAGTAGATGGAAGAACTTGAGGGAAGTGGTTGCAAGTCAGAACACAAAAAGGGACGTGTGACTTGACTGTATGAGCAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CCA 90 bp | CATTGGTGGACACACACCAACAAATTAACAATGGCAAGGATTCCCTaGATGAAGTTACAAACTGTGTATGTAGGATTTGCGATAGTCAAA | + |
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Preference number: 1 (lower is better) Translates to: HWWTHTNKLTMARIP*MKLQTVYVGFAIVK Trigger: TTTGACTATCGCAAATCCTACATACACAGTTTGTAACTTCATCCAGGGAATCCTTGCCATTGTTAATTTGTTGGTGTGTGTCCACCAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CCA 90 bp | TTCCAATGTTTCAAACAGTACTTTTTGACATTTCTTCAGGTTGGTTaGATCTTACATTTGAAAGCTGACTTGGTAACTAAAGGGCTGTCC | + |
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Preference number: 1 (lower is better) Translates to: FQCFKQYFLTFLQVG*ILHLKADLVTKGLS Trigger: GGACAGCCCTTTAGTTACCAAGTCAGCTTTCAAATGTAAGATCCAACCAACCTGAAGAAATGTCAAAAAGTACTGTTTGAAACATTGGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CAA 90 bp | CTGGTCTCCTTGATTTTCAGGGACAAGGCACAGGGTTTCCTAAGCTaGCAATCTGCTTTCTTCTCCTGTATGCACCTGGCCAACAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: LVSLIFRDKAQGFLS*QSAFFSCMHLANRP Trigger: TGGCCTGTTGGCCAGGTGCATACAGGAGAAGAAAGCAGATTGCAAGCTTAGGAAACCCTGTGCCTTGTCCCTGAAAATCAAGGAGACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR-3UTR TCA 90 bp | CCTAAGCTTGCAATCTGCTTTCTTCTCCTGTATGCACCTGGCCAACAGGCCATTAGCCAAGTGTTCTGCTaGATCCAGGCAGAAAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: PKLAICFLLLYAPGQQAISQVFC*IQAERK Trigger: CTTCCTTTCTGCCTGGATTCAGCAGAACACTTGGCT...AATGGCCTGTTGGCCAGGTGCATACAGGAGAAGAAAGCAGATTGCAAGCTTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CAA 90 bp | TGCAATCTGCTTTCTTCTCCTGTATGCACCTGGCCAACAGGCCATTaGCTTTCTCTTTCTTCATGGAGAACATACAGCAGTATCGCCCTG | + |
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Preference number: 2 (lower is better) Translates to: CNLLSSPVCTWPTGH*LSLSSWRTYSSIAL Trigger: CAGGGCGATACTGCTGTATGTTCTCCATGAAGAAAGAGAAAGCAAATGGCCTGTTGGCCAGGTGCATACAGGAGAAGAAAGCAGATTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CAA 90 bp | AGCATTCCTCTACACTGCTCATACAGTCAAGTCACACGTCCCTTTTaGTGTTCTGACTTGCAACCACTTCCCTCAAGTTCTTCCATCTAC | + |
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Preference number: 2 (lower is better) Translates to: SIPLHCSYSQVTRPF*CSDLQPLPSSSSIY Trigger: GTAGATGGAAGAACTTGAGGGAAGTGGTTGCAAGTCAGAACACAAAAAGGGACGTGTGACTTGACTGTATGAGCAGTGTAGAGGAATGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR-3UTR TCA 90 bp | TGCTTTCTTCTCCTGTATGCACCTGGCCAACAGGCCATTTGCTTTCTCTTTCTTCAAGGATTCCCTGGATaGAGTTACAAACTGTGTATG | + |
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Preference number: 2 (lower is better) Translates to: CFLLLYAPGQQAICFLFLQGFPG*SYKLCM Trigger: CATACACAGTTTGTAACTTCATCCAGGGAATCCTTG...AAGAAAGAGAAAGCAAATGGCCTGTTGGCCAGGTGCATACAGGAGAAGAAAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR-3UTR CCA 90 bp | TGCTTTCTTCTCCTGTATGCACCTGGCCAACAGGCCATTTGCTTTCTCTTTCTTATGGCAAGGATTCCCTaGATGAAGTTACAAACTGTG | + |
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Preference number: 2 (lower is better) Translates to: CFLLLYAPGQQAICFLFLMARIP*MKLQTV Trigger: CACAGTTTGTAACTTCATCCAGGGAATCCTTGCCAT...AAGAAAGAGAAAGCAAATGGCCTGTTGGCCAGGTGCATACAGGAGAAGAAAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CAA 90 bp | TTGACATTTCTTCAGGTTGGTTGGATCTTACATTTGAAAGCTGACTaGGTAACTAAAGGGCTGTCCACACACCTGGCATATCTCAGCAAG | + |
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Preference number: 2 (lower is better) Translates to: LTFLQVGWILHLKAD*VTKGLSTHLAYLSK Trigger: CTTGCTGAGATATGCCAGGTGTGTGGACAGCCCTTTAGTTACCAAGTCAGCTTTCAAATGTAAGATCCAACCAACCTGAAGAAATGTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR-3UTR GCA 90 bp | ATACAGCAGTATCGCCCTGGCTCCATGTCCTACATATGCCCCACCTTTGTAAAATGTGTATGTAGGATTTaGGATAGTCAAAGTCAAACC | + |
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Preference number: 2 (lower is better) Translates to: IQQYRPGSMSYICPTFVKCVCRI*DSQSQT Trigger: GGTTTGACTTTGACTATCGCAAATCCTACATACACA...TTTTACAAAGGTGGGGCATATGTAGGACATGGAGCCAGGGCGATACTGCTGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR-3UTR CCA 90 bp | CCTAAGCTTGCAATCTGCTTTCTTCTCCTGTATGCACCTGGCCAACAGGCCATTCTATTCTATGTCACATaGTGCATCTTACTGTATAGT | + |
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Preference number: 2 (lower is better) Translates to: PKLAICFLLLYAPGQQAILFYVT*CILLYS Trigger: ACTATACAGTAAGATGCACCATGTGACATAGAATAG...AATGGCCTGTTGGCCAGGTGCATACAGGAGAAGAAAGCAGATTGCAAGCTTAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CAA 90 bp | AAACAGTACTTTTTGACATTTCTTCAGGTTGGTTGGATCTTACATTaGAAAGCTGACTTGGTAACTAAAGGGCTGTCCACACACCTGGCA | + |
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Preference number: 2 (lower is better) Translates to: KQYFLTFLQVGWILH*KADLVTKGLSTHLA Trigger: TGCCAGGTGTGTGGACAGCCCTTTAGTTACCAAGTCAGCTTTCAAATGTAAGATCCAACCAACCTGAAGAAATGTCAAAAAGTACTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR-3UTR CCA 90 bp | CAGCAAGGCATGAACACCTTCACACCTAGTTGCAATGAGACCATATCTAGATCCTTAACACTTCATTGGTaGACACACACCAACAAATTA | + |
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Preference number: 2 (lower is better) Translates to: QQGMNTFTPSCNETISRSLTLHW*THTNKL Trigger: TAATTTGTTGGTGTGTGTCCACCAATGAAGTGTTAA...GGATCTAGATATGGTCTCATTGCAACTAGGTGTGAAGGTGTTCATGCCTTGCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR GCA 72 bp | CAGGGACAAGGCACAGGGTTTCCTAAGCTTGCAATCTaGTTTCTTCTCCTGTATGCACCTGGCCAACAGGCC | + |
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Preference number: 3 (lower is better) Translates to: QGQGTGFPKLAI*FLLLYAPGQQA Trigger: GGCCTGTTGGCCAGGTGCATACAGGAGAAGAAAGCAGATTGCAAGCTTAGGAAACCCTGTGCCTTGTCCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR-3UTR CAA 90 bp | CCTAAGCTTGCAATCTGCTTTCTTCTCCTGTATGCACCTGGCCAACAGGCCATTGTCACACGTCCCTTTTaGTGTTCTGACTTGCAACCA | + |
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Preference number: 3 (lower is better) Translates to: PKLAICFLLLYAPGQQAIVTRPF*CSDLQP Trigger: TGGTTGCAAGTCAGAACACAAAAAGGGACGTGTGAC...AATGGCCTGTTGGCCAGGTGCATACAGGAGAAGAAAGCAGATTGCAAGCTTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR-3UTR CAA 90 bp | CCTAAGCTTGCAATCTGCTTTCTTCTCCTGTATGCACCTGGCCAACAGGCCATTTTTTTGTGTTCTGACTaGCAACCACTTCCCTCAAGT | + |
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Preference number: 3 (lower is better) Translates to: PKLAICFLLLYAPGQQAIFLCSD*QPLPSS Trigger: ACTTGAGGGAAGTGGTTGCAAGTCAGAACACAAAAA...AATGGCCTGTTGGCCAGGTGCATACAGGAGAAGAAAGCAGATTGCAAGCTTAGG 47% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR GCA 72 bp | AAGGAAAAGAAAAGCACCTCTGTACAGCCAGCAAGCTaGTGTATCCATCTTCACAGCATTCCTCTACACTGC | + |
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Preference number: 3 (lower is better) Translates to: KEKKSTSVQPAS*CIHLHSIPLHC Trigger: GCAGTGTAGAGGAATGCTGTGAAGATGGATACAGCAGCTTGCTGGCTGTACAGAGGTGCTTTTCTTTTCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CCA 72 bp | CTCTTTCTTCATGGAGAACATACAGCAGTATCGCCCTaGCTCCATGTCCTACATATGCCCCACCTTTGTAAA | + |
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Preference number: 3 (lower is better) Translates to: LFLHGEHTAVSP*LHVLHMPHLCK Trigger: TTTACAAAGGTGGGGCATATGTAGGACATGGAGCCAGGGCGATACTGCTGTATGTTCTCCATGAAGAAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR GCA 72 bp | AGCTGCTGTATCCATCTTCACAGCATTCCTCTACACTaGTCATACAGTCAAGTCACACGTCCCTTTTTGTGT | + |
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Preference number: 3 (lower is better) Translates to: SCCIHLHSIPLH*SYSQVTRPFLC Trigger: ACACAAAAAGGGACGTGTGACTTGACTGTATGAGCAGTGTAGAGGAATGCTGTGAAGATGGATACAGCAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR TCA 72 bp | CTCATACAGTCAAGTCACACGTCCCTTTTTGTGTTCTaGCTTGCAACCACTTCCCTCAAGTTCTTCCATCTA | + |
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Preference number: 3 (lower is better) Translates to: LIQSSHTSLFVF*LATTSLKFFHL Trigger: TAGATGGAAGAACTTGAGGGAAGTGGTTGCAAGTCAGAACACAAAAAGGGACGTGTGACTTGACTGTATGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR GCA 72 bp | ACAGTCAAGTCACACGTCCCTTTTTGTGTTCTGACTTaGAACCACTTCCCTCAAGTTCTTCCATCTACTAGA | + |
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Preference number: 3 (lower is better) Translates to: TVKSHVPFCVLT*NHFPQVLPSTR Trigger: TCTAGTAGATGGAAGAACTTGAGGGAAGTGGTTGCAAGTCAGAACACAAAAAGGGACGTGTGACTTGACTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR GCA 72 bp | TTTCTTCTCCTGTATGCACCTGGCCAACAGGCCATTTaGTTTCTCTTTCTTCATGGAGAACATACAGCAGTA | + |
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Preference number: 3 (lower is better) Translates to: FLLLYAPGQQAI*FLFLHGEHTAV Trigger: TACTGCTGTATGTTCTCCATGAAGAAAGAGAAAGCAAATGGCCTGTTGGCCAGGTGCATACAGGAGAAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR TCA 72 bp | TCACACCTAGTTGCAATGAGACCATATCTAGATCCCTaGGCAAAGATTTACTTTCTAGGACTGGTCTCCTTG | + |
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Preference number: 3 (lower is better) Translates to: SHLVAMRPYLDP*AKIYFLGLVSL Trigger: CAAGGAGACCAGTCCTAGAAAGTAAATCTTTGCTCAGGGATCTAGATATGGTCTCATTGCAACTAGGTGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CCA 72 bp | ACACACACCAACAAATTAACAATGGCAAGGATTCCCTaGATGAAGTTACAAACTGTGTATGTAGGATTTGCG | + |
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Preference number: 3 (lower is better) Translates to: THTNKLTMARIP*MKLQTVYVGFA Trigger: CGCAAATCCTACATACACAGTTTGTAACTTCATCCAGGGAATCCTTGCCATTGTTAATTTGTTGGTGTGTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR TCA 72 bp | TTCCCTCAAGTTCTTCCATCTACTAGAGAGCAAGTTTaGAAATTTTCATTTAACACTTCATTGGTGGACACA | + |
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Preference number: 3 (lower is better) Translates to: FPQVLPSTREQV*KFSFNTSLVDT Trigger: TGTGTCCACCAATGAAGTGTTAAATGAAAATTTTCAAACTTGCTCTCTAGTAGATGGAAGAACTTGAGGGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| CDS-3UTR GCA 90 bp | GCAAGCTGCTGTATCCATCTTCACAGCATTCCTCTACACTGCTCATACAGTCAACCAGGATCTCCAGCATaGACTGTTGGCAATCTACCT | + |
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Preference number: 4 (lower is better) Translates to: ASCCIHLHSIPLHCSYSQPGSPA*TVGNLP Trigger: AGGTAGATTGCCAACAGTGCATGCTGGAGATCCTGG...TTGACTGTATGAGCAGTGTAGAGGAATGCTGTGAAGATGGATACAGCAGCTTGC 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| CDS-3UTR GCA 90 bp | TGTATAGTAGGAATAACTCTATCTAGAGCAGGAGTGCGAGGTCTGTTCCTAGAGAAATTGCTCGGTTCCTaGAGTGTCCAGGATCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: CIVGITLSRAGVRGLFLEKLLGS*SVQDLQ Trigger: CTGGAGATCCTGGACACTGCAGGAACCGAGCAATTT...CTCTAGGAACAGACCTCGCACTCCTGCTCTAGATAGAGTTATTCCTACTATACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CAA 72 bp | CTACACTGCTCATACAGTCAAGTCACACGTCCCTTTTaGTGTTCTGACTTGCAACCACTTCCCTCAAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: LHCSYSQVTRPF*CSDLQPLPSSS Trigger: AGAACTTGAGGGAAGTGGTTGCAAGTCAGAACACAAAAAGGGACGTGTGACTTGACTGTATGAGCAGTGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CAA 72 bp | CTTTCTTCTCCTGTATGCACCTGGCCAACAGGCCATTaGCTTTCTCTTTCTTCATGGAGAACATACAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: LSSPVCTWPTGH*LSLSSWRTYSS Trigger: ACTGCTGTATGTTCTCCATGAAGAAAGAGAAAGCAAATGGCCTGTTGGCCAGGTGCATACAGGAGAAGAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| 3UTR CAA 72 bp | CTTCAGGTTGGTTGGATCTTACATTTGAAAGCTGACTaGGTAACTAAAGGGCTGTCCACACACCTGGCATAT | + |
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Preference number: 4 (lower is better) Translates to: LQVGWILHLKAD*VTKGLSTHLAY Trigger: ATATGCCAGGTGTGTGGACAGCCCTTTAGTTACCAAGTCAGCTTTCAAATGTAAGATCCAACCAACCTGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| CDS-3UTR GCA 90 bp | GGTTCAGTGATGAGGGCAAGTTCGAACTATAATATTTGGTTAGAAATGCTGAAACCAGGATCTCCAGCATaGACTGTTGGCAATCTACCT | + |
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Preference number: 4 (lower is better) Translates to: GSVMRASSNYNIWLEMLKPGSPA*TVGNLP Trigger: AGGTAGATTGCCAACAGTGCATGCTGGAGATCCTGG...TTTCAGCATTTCTAACCAAATATTATAGTTCGAACTTGCCCTCATCACTGAACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199969.5 |
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| CDS-3UTR GCA 90 bp | GGTTCAGTGATGAGGGCAAGTTCGAACTATAATATTTGGTTAGAAATGCTGAAAAAATTGCTCGGTTCCTaGAGTGTCCAGGATCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: GSVMRASSNYNIWLEMLKKLLGS*SVQDLQ Trigger: CTGGAGATCCTGGACACTGCAGGAACCGAGCAATTT...TTTCAGCATTTCTAACCAAATATTATAGTTCGAACTTGCCCTCATCACTGAACC 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000199969.5 |
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| CDS-3UTR CAA 90 bp | TGTATAGTAGGAATAACTCTATCTAGAGCAGGAGTGCGAGGTCTGTTCCTAGAGTTCTGGCCTTGTTCTTaGCCAACTACCCGTTCATCT | + |
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Preference number: 5 (lower is better) Translates to: CIVGITLSRAGVRGLFLEFWPCS*PTTRSS Trigger: AGATGAACGGGTAGTTGGCAAAGAACAAGGCCAGAA...CTCTAGGAACAGACCTCGCACTCCTGCTCTAGATAGAGTTATTCCTACTATACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| CDS-3UTR CAA 90 bp | CATGGTGCATCTTACTGTATAGTAGGAATAACTCTATCTAGAGCAGGAGTGCGAGCAATCTACCTCGACTaGCTTTCTGTAGGAATCTTC | + |
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Preference number: 5 (lower is better) Translates to: HGASYCIVGITLSRAGVRAIYLD*LSVGIF Trigger: GAAGATTCCTACAGAAAGCAAGTCGAGGTAGATTGC...TCGCACTCCTGCTCTAGATAGAGTTATTCCTACTATACAGTAAGATGCACCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090678.11 |
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| CDS-3UTR CAA 90 bp | GGTTCAGTGATGAGGGCAAGTTCGAACTATAATATTTGGTTAGAAATGCTGAAATTCTGGCCTTGTTCTTaGCCAACTACCCGTTCATCT | + |
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Preference number: 5 (lower is better) Translates to: GSVMRASSNYNIWLEMLKFWPCS*PTTRSS Trigger: AGATGAACGGGTAGTTGGCAAAGAACAAGGCCAGAA...TTTCAGCATTTCTAACCAAATATTATAGTTCGAACTTGCCCTCATCACTGAACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199969.5 |
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| CDS-3UTR CAA 90 bp | GGTTCAGTGATGAGGGCAAGTTCGAACTATAATATTTGGTTAGAAATGCTGAAAGCAATCTACCTCGACTaGCTTTCTGTAGGAATCTTC | + |
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Preference number: 5 (lower is better) Translates to: GSVMRASSNYNIWLEMLKAIYLD*LSVGIF Trigger: GAAGATTCCTACAGAAAGCAAGTCGAGGTAGATTGC...TTTCAGCATTTCTAACCAAATATTATAGTTCGAACTTGCCCTCATCACTGAACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199969.5 |
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