RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RANGAP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022391

Ensembl transcript IDs: ENSMUST00000052374.13, ENSMUST00000170134.9, ENSMUST00000171115.3, ENSMUST00000230302.2, ENSMUST00000230726.2

Found 264 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAAGACCCTCTCCCTTCCTCTGGTCAAAATATCCAATGGAGATGCTaGCCGAGCTCAGTCCATCCAAGACCCTCAGTCACTGGGGCAGGG +
Preference number: 1 (lower is better)
Translates to: QDPLPSSGQNIQWRC*PSSVHPRPSVTGAG
Trigger: CCCTGCCCCAGTGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTTGACCAGAGGAAGGGAGAGGGTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR GCA 90 bp AGACAAGACCCTCTCCCTTCCTCTGGTCAAAATATCCAATGGAGATaGTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCACTGGGGCA +
Preference number: 1 (lower is better)
Translates to: RQDPLPSSGQNIQWR*WPSSVHPRPSVTGA
Trigger: TGCCCCAGTGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTTGACCAGAGGAAGGGAGAGGGTCTTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR CCA 90 bp GGTGGGACAGGAAGGCAGGGCAGACAGGACAGCCAACGGGGCCTATaGCTAAGTTGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCT +
Preference number: 1 (lower is better)
Translates to: GGTGRQGRQDSQRGL*LSWPKFNNKAAFYP
Trigger: AGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCAACTTAGCCATAGGCCCCGTTGGCTGTCCTGTCTGCCCTGCCTTCCTGTCCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR CCA 90 bp CAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCCTCTaGTCAAAATATCCAATGGAGATGCTGGCCGAGCTCAGTCCATCC +
Preference number: 1 (lower is better)
Translates to: QRTNMTQETRPSPFL*SKYPMEMLAELSPS
Trigger: GGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTTGACCAGAGGAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR-3UTR GCA 90 bp GTTCAGGCATTAGGGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGGGGATTAAAGGCATGTaGCACCACGCCCGGCTGAGT +
Preference number: 2 (lower is better)
Translates to: VQALGDLPFPPQEKNRAGGIKGM*HHARLS
Trigger: ACTCAGCCGGGCGTGGTGGCACATGCCTTTAATCCC...CCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCCCTAATGCCTGAAC
61% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
3UTR-3UTR CCA 90 bp CTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCTTTTTGAATTCCCCAGGCTTTaGTGGGACAGGAAGGCAGGG +
Preference number: 2 (lower is better)
Translates to: LPFPPQEKNRAGPAKVLFEFPRL*WDRKAG
Trigger: CCCTGCCTTCCTGTCCCACCAAAGCCTGGGGAATTC...AAAAAGCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
3UTR CAA 90 bp TGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTaGGTGGGACAGGAAGGCAGGGCAGACAGGACAGCCAACGGGGCC +
Preference number: 2 (lower is better)
Translates to: CYLGTVDTAHRIPQA*VGQEGRADRTANGA
Trigger: GGCCCCGTTGGCTGTCCTGTCTGCCCTGCCTTCCTGTCCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR-3UTR CCA 90 bp CACACAACACAACGGGAAGTAGGAGGTGGCCAAGCAGCCACTTCGGGAAGTCACTTCCCCAGGCTTTGGTaGGACAGGAAGGCAGGGCAG +
Preference number: 2 (lower is better)
Translates to: HTTQREVGGGQAATSGSHFPRLW*DRKAGQ
Trigger: CTGCCCTGCCTTCCTGTCCCACCAAAGCCTGGGGAA...GTGACTTCCCGAAGTGGCTGCTTGGCCACCTCCTACTTCCCGTTGTGTTGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
3UTR-3UTR CCA 90 bp CACACAACACAACGGGAAGTAGGAGGTGGCCAAGCAGCCACTTCGGGAAGTCACCAGCTCCCACTCCCCTaGCTGCTCCTCCAAGTCACA +
Preference number: 2 (lower is better)
Translates to: HTTQREVGGGQAATSGSHQLPLP*LLLQVT
Trigger: TGTGACTTGGAGGAGCAGCCAGGGGAGTGGGAGCTG...GTGACTTCCCGAAGTGGCTGCTTGGCCACCTCCTACTTCCCGTTGTGTTGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
3UTR-3UTR CCA 90 bp GTTCAGGCATTAGGGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCTCCTCCAAGTCACATaGTTAAGGGCAGAGGTTTTT +
Preference number: 2 (lower is better)
Translates to: VQALGDLPFPPQEKNRAGLLQVT*LRAEVF
Trigger: AAAAACCTCTGCCCTTAACCATGTGACTTGGAGGAG...CCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCCCTAATGCCTGAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
3UTR-3UTR CCA 90 bp GAGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCAAGACCCTCAGTCACTaGGGCAGGGCGAGGGACAAG +
Preference number: 2 (lower is better)
Translates to: EHLLPGSIPITHSCLRKPKTLSH*GRARDK
Trigger: CTTGTCCCTCGCCCTGCCCCAGTGACTGAGGGTCTT...GGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
3UTR-3UTR CCA 90 bp CAGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACAAAGACCCTCAGTCACTaGGGCAGGGCGAGGGACAAG +
Preference number: 2 (lower is better)
Translates to: QGDEDLQSRQEVHTHTHTKTLSH*GRARDK
Trigger: CTTGTCCCTCGCCCTGCCCCAGTGACTGAGGGTCTT...TGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR-3UTR CCA 90 bp CCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCAAGACCCTCAGTCACTaGGGCAGGGCGAGGGACAAG +
Preference number: 2 (lower is better)
Translates to: PTQYQRTNMTQETRPSPFKTLSH*GRARDK
Trigger: CTTGTCCCTCGCCCTGCCCCAGTGACTGAGGGTCTT...GAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR-3UTR CCA 90 bp TTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGACAGGAATCAATTCCCCACAGTaGACTTGGGTTAGTCCAGCA +
Preference number: 2 (lower is better)
Translates to: FRHGGHSTQNSPGFGGTGINSPQ*TWVSPA
Trigger: TGCTGGACTAACCCAAGTCCACTGTGGGGAATTGAT...TCCTGTCCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR-3UTR CCA 90 bp AGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTGGAGAAGAACAGGGCTaGGCCAGCCAAGGTGCTTTT +
Preference number: 2 (lower is better)
Translates to: SISYPAPSLLHTPVLENPGEEQG*ASQGAF
Trigger: AAAAGCACCTTGGCTGGCCCAGCCCTGTTCTTCTCC...AGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
3UTR-3UTR CCA 90 bp GAGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCCCCTCTCCCTTCCTCTaGTCAAAATATCCAATGGAG +
Preference number: 2 (lower is better)
Translates to: EHLLPGSIPITHSCLRKPPSPFL*SKYPME
Trigger: CTCCATTGGATATTTTGACCAGAGGAAGGGAGAGGG...GGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCTC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
3UTR-3UTR CCA 90 bp CCCACACACACACACCAAACCAACACAGTATCAAAGGACCAATATGACACAGGACCCTCTCCCTTCCTCTaGTCAAAATATCCAATGGAG +
Preference number: 2 (lower is better)
Translates to: PTHTHQTNTVSKDQYDTGPSPFL*SKYPME
Trigger: CTCCATTGGATATTTTGACCAGAGGAAGGGAGAGGG...TCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR GCA 72 bp CTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTaGTTTTTCCACCTGGTCCTAGAGCCAGGTTACCCC +
Preference number: 3 (lower is better)
Translates to: LPRRRTGLGQPR*FFHLVLEPGYP
Trigger: GGGGTAACCTGGCTCTAGGACCAGGTGGAAAAAGCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
3UTR GCA 72 bp CCTCTCCCTTCCTCTGGTCAAAATATCCAATGGAGATaGTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTC +
Preference number: 3 (lower is better)
Translates to: PLPSSGQNIQWR*WPSSVHPRPSV
Trigger: GACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTTGACCAGAGGAAGGGAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR CCA 72 bp CTCCCTTCCTCTGGTCAAAATATCCAATGGAGATGCTaGCCGAGCTCAGTCCATCCAAGACCCTCAGTCACT +
Preference number: 3 (lower is better)
Translates to: LPSSGQNIQWRC*PSSVHPRPSVT
Trigger: AGTGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTTGACCAGAGGAAGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR CCA 72 bp GGAAGGCAGGGCAGACAGGACAGCCAACGGGGCCTATaGCTAAGTTGGCCTAAGTTTAATAACAAAGCAGCT +
Preference number: 3 (lower is better)
Translates to: GRQGRQDSQRGL*LSWPKFNNKAA
Trigger: AGCTGCTTTGTTATTAAACTTAGGCCAACTTAGCCATAGGCCCCGTTGGCTGTCCTGTCTGCCCTGCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR-3UTR CAA 90 bp TCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTCAGAGAAGAATTCCCCAGGCTTaGGTGGGACAGGAAGGCAGG +
Preference number: 3 (lower is better)
Translates to: SYPAPSLLHTPVLENPQRRIPQA*VGQEGR
Trigger: CCTGCCTTCCTGTCCCACCAAAGCCTGGGGAATTCT...TCTCTGAGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
3UTR TCA 72 bp TCCCCACAGTGGACTTGGGTTAGTCCAGCAGGGAGATaGAGATCTGCAATCCAGACAGGAAGTACATACCCA +
Preference number: 3 (lower is better)
Translates to: SPQWTWVSPAGR*RSAIQTGSTYP
Trigger: TGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCTGCTGGACTAACCCAAGTCCACTGTGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR CCA 72 bp AATATGACACAGGAGACAAGACCCTCTCCCTTCCTCTaGTCAAAATATCCAATGGAGATGCTGGCCGAGCTC +
Preference number: 3 (lower is better)
Translates to: NMTQETRPSPFL*SKYPMEMLAEL
Trigger: GAGCTCGGCCAGCATCTCCATTGGATATTTTGACCAGAGGAAGGGAGAGGGTCTTGTCTCCTGTGTCATATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
3UTR CCA 72 bp GGCAGACAGGACAGCCAACGGGGCCTATGGCTAAGTTaGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCT +
Preference number: 3 (lower is better)
Translates to: GRQDSQRGLWLS*PKFNNKAAFYP
Trigger: AGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCAACTTAGCCATAGGCCCCGTTGGCTGTCCTGTCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp GGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCTCCCCTGACCCTCTCTaGGGAGGCTCTTCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: GTCPSLPRRRTGLGQPRCSPDPL*GGSSSS
Trigger: GGAAGAGGAAGAGCCTCCGCAGAGAGGGTCAGGGGA...GCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp GGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCAGGTGGAGAGGTCTGTaGGAGTCGGGGAGGACAGCA +
Preference number: 4 (lower is better)
Translates to: GTCPSLPRRRTGLGQPRCRWRGL*ESGRTA
Trigger: TGCTGTCCTCCCCGACTCCCACAGACCTCTCCACCT...GCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp GGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCGCTTGCCTTGGGCACTaGACTTGCGGTGACACTCAG +
Preference number: 4 (lower is better)
Translates to: GTCPSLPRRRTGLGQPRCACLGH*TCGDTQ
Trigger: CTGAGTGTCACCGCAAGTCCAGTGCCCAAGGCAAGC...GCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp GGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCTCCTGCCTCACCACGTaGTTCAACACCATCAGGGGG +
Preference number: 4 (lower is better)
Translates to: GTCPSLPRRRTGLGQPRCSCLTT*FNTIRG
Trigger: CCCCCTGATGGTGTTGAACCACGTGGTGAGGCAGGA...GCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp GGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCGGAATGACAGGAAGGTaGAGAGGTCTGTGGGAGTCG +
Preference number: 4 (lower is better)
Translates to: GTCPSLPRRRTGLGQPRCGMTGR*RGLWES
Trigger: CGACTCCCACAGACCTCTCCACCTTCCTGTCATTCC...GCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR TCA 90 bp TCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCACTGGGGAGCAGGCTGGGCTCTTaGGGAGGGCCTCGAAGCCTC +
Preference number: 4 (lower is better)
Translates to: SNGDAGRAQSIQDPQSLGSRLGS*GGPRSL
Trigger: GAGGCTTCGAGGCCCTCCTCAAGAGCCCAGCCTGCT...CCCCAGTGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp GGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCTCGGAGGTATCAGTCTaGTGGACTATCAGCACCGAG +
Preference number: 4 (lower is better)
Translates to: GTCPSLPRRRTGLGQPRCSEVSV*WTISTE
Trigger: CTCGGTGCTGATAGTCCAGCAGACTGATACCTCCGA...GCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR GCA 90 bp GGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCGGGCTTTGTCACAAATaGCAAGAGCAGGGGTGCAAG +
Preference number: 4 (lower is better)
Translates to: GTCPSLPRRRTGLGQPRCGLCHK*QEQGCK
Trigger: CTTGCACCCCTGCTCTTGGCATTTGTGACAAAGCCC...GCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp GAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCACTGGGGCAGGGCGGCTTGCCTTGGGCACTaGACTTGCGGTGACACTCAG +
Preference number: 4 (lower is better)
Translates to: EMLAELSPSKTLSHWGRAACLGH*TCGDTQ
Trigger: CTGAGTGTCACCGCAAGTCCAGTGCCCAAGGCAAGC...CGCCCTGCCCCAGTGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCTTTTTCTCTGGGGAGGGGAATaGCAGGAAGGTGGAGAGGTC +
Preference number: 4 (lower is better)
Translates to: LPFPPQEKNRAGPAKVLFLWGGE*QEGGEV
Trigger: GACCTCTCCACCTTCCTGTCATTCCCCTCCCCAGAG...AAAAAGCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR TCA 90 bp CAAGACCCTCAGTCACTGGGGCAGGGCGAGGGACAAGAAGCAGCTGCCTTTAAACTAAGGCCTTGGCGATaGCTCTGGCCGCTTCCACGC +
Preference number: 4 (lower is better)
Translates to: QDPQSLGQGEGQEAAAFKLRPWR*LWPLPR
Trigger: GCGTGGAAGCGGCCAGAGTCATCGCCAAGGCCTTAG...TTTAAAGGCAGCTGCTTCTTGTCCCTCGCCCTGCCCCAGTGACTGAGGGTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp TCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCACTGGGGAGGTGGAGAGGTCTGTaGGAGTCGGGGAGGACAGCA +
Preference number: 4 (lower is better)
Translates to: SNGDAGRAQSIQDPQSLGRWRGL*ESGRTA
Trigger: TGCTGTCCTCCCCGACTCCCACAGACCTCTCCACCT...CCCCAGTGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp CTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCTTTTTCTTGGGCACTGGACTTaGGGTGACACTCAGTCAGAG +
Preference number: 4 (lower is better)
Translates to: LPFPPQEKNRAGPAKVLFLGHWT*GDTQSE
Trigger: CTCTGACTGAGTGTCACCGCAAGTCCAGTGCCCAAG...AAAAAGCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp GAGAAGAACAGGGCTGGGCCAGCCAAGGTGCTTTTTCCACCTGGTCCTAGAGCCCTTCTGCCAGTGCAGTaGCTCCGTCATTCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: EKNRAGPAKVLFPPGPRALLPVQ*LRHSPG
Trigger: GCCTGGAGAATGACGGAGCCACTGCACTGGCAGAAG...GGCTCTAGGACCAGGTGGAAAAAGCACCTTGGCTGGCCCAGCCCTGTTCTTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp CTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCTTTTTGTCTGCAGCAGATTGTaGCGGGCAAAGGAGCAGGTT +
Preference number: 4 (lower is better)
Translates to: LPFPPQEKNRAGPAKVLFVCSRL*RAKEQV
Trigger: AACCTGCTCCTTTGCCCGCCACAATCTGCTGCAGAC...AAAAAGCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR TCA 90 bp GTTCAGGCATTAGGGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCCCACCCTTCTCAGTaGAGGTGTTGTCATTTAGGT +
Preference number: 4 (lower is better)
Translates to: VQALGDLPFPPQEKNRAGPHPSQ*RCCHLG
Trigger: ACCTAAATGACAACACCTTCACTGAGAAGGGTGGGG...CCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCCCTAATGCCTGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR TCA 90 bp CAAGACCCTCAGTCACTGGGGCAGGGCGAGGGACAAGAAGCAGCTGCCTTTAAACTCCCTCATCATCACTaGGGGATGCCAGCACCTTGG +
Preference number: 4 (lower is better)
Translates to: QDPQSLGQGEGQEAAAFKLPHHH*GMPAPW
Trigger: CCAAGGTGCTGGCATCCCTCAGTGATGATGAGGGAG...TTTAAAGGCAGCTGCTTCTTGTCCCTCGCCCTGCCCCAGTGACTGAGGGTCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp TTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGACAGGACTCTGGGGAGGGGAATaGCAGGAAGGTGGAGAGGTC +
Preference number: 4 (lower is better)
Translates to: FRHGGHSTQNSPGFGGTGLWGGE*QEGGEV
Trigger: GACCTCTCCACCTTCCTGTCATTCCCCTCCCCAGAG...TCCTGTCCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp TATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGACAGTCAGGGCCAGGGGCTTaGCTTGGGCACTGGACTTGC +
Preference number: 4 (lower is better)
Translates to: YLGTVDTAHRIPQALVGQSGPGA*LGHWTC
Trigger: GCAAGTCCAGTGCCCAAGGCAAGCCCCTGGCCCTGA...CTGTCCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp GTTCAGGCATTAGGGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGAAAAGCTTCTGCCAGTaGAGTGGCTCCGTCATTCTC +
Preference number: 4 (lower is better)
Translates to: VQALGDLPFPPQEKNRAGKSFCQ*SGSVIL
Trigger: GAGAATGACGGAGCCACTGCACTGGCAGAAGCTTTT...CCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCCCTAATGCCTGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR GCA 90 bp TCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCACTGGGGGATCCCAAAAGCTTCTaGCAGTGCAGTGGCTCCGTC +
Preference number: 4 (lower is better)
Translates to: SNGDAGRAQSIQDPQSLGDPKSF*QCSGSV
Trigger: GACGGAGCCACTGCACTGGCAGAAGCTTTTGGGATC...CCCCAGTGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp CACACAACACAACGGGAAGTAGGAGGTGGCCAAGCAGCCACTTCGGGAAGTCACTTGATGGCAAAGGCCTaGGCCAGGGCTGTGACACCA +
Preference number: 4 (lower is better)
Translates to: HTTQREVGGGQAATSGSHLMAKA*ARAVTP
Trigger: TGGTGTCACAGCCCTGGCCCAGGCCTTTGCCATCAA...GTGACTTCCCGAAGTGGCTGCTTGGCCACCTCCTACTTCCCGTTGTGTTGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp CAAGACCCTCAGTCACTGGGGCAGGGCGAGGGACAAGAAGCAGCTGCCTTTAAATCAGCTCCTTTAGCTTaGGCAGGCCACCACGGACAG +
Preference number: 4 (lower is better)
Translates to: QDPQSLGQGEGQEAAAFKSAPLA*AGHHGQ
Trigger: CTGTCCGTGGTGGCCTGCCCAAGCTAAAGGAGCTGA...TTTAAAGGCAGCTGCTTCTTGTCCCTCGCCCTGCCCCAGTGACTGAGGGTCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CTTTCTACCCTTCCCCTAGGCATCAATTCCCCACAGTGGACTTGGGTTAGTCCACTAAGGCCTTGGCGATaGCTCTGGCCGCTTCCACGC +
Preference number: 4 (lower is better)
Translates to: LSTLPLGINSPQWTWVSPLRPWR*LWPLPR
Trigger: GCGTGGAAGCGGCCAGAGTCATCGCCAAGGCCTTAG...TGGACTAACCCAAGTCCACTGTGGGGAATTGATGCCTAGGGGAAGGGTAGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp GAGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCAGCAGGCTGGGCTCTTaGGGAGGGCCTCGAAGCCTC +
Preference number: 4 (lower is better)
Translates to: EHLLPGSIPITHSCLRKPSRLGS*GGPRSL
Trigger: GAGGCTTCGAGGCCCTCCTCAAGAGCCCAGCCTGCT...GGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR TCA 90 bp AGGAGACAAGACCCTCTCCCTTCCTCTGGTCAAAATATCCAATGGAGATGCTGGAGCAGGCTGGGCTCTTaGGGAGGGCCTCGAAGCCTC +
Preference number: 4 (lower is better)
Translates to: RRQDPLPSSGQNIQWRCWSRLGS*GGPRSL
Trigger: GAGGCTTCGAGGCCCTCCTCAAGAGCCCAGCCTGCT...CCAGCATCTCCATTGGATATTTTGACCAGAGGAAGGGAGAGGGTCTTGTCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp TCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCACTGGGGCACCTTCAGGAAGGCTaGAACAACCTTCTCTGGGTC +
Preference number: 4 (lower is better)
Translates to: SNGDAGRAQSIQDPQSLGHLQEG*NNLLWV
Trigger: GACCCAGAGAAGGTTGTTTCAGCCTTCCTGAAGGTG...CCCCAGTGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp TTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGACAGGAACCACGGACAGCATCTaGGATGGCAACGGCACCCTT +
Preference number: 4 (lower is better)
Translates to: FRHGGHSTQNSPGFGGTGTTDSI*DGNGTL
Trigger: AAGGGTGCCGTTGCCATCGCAGATGCTGTCCGTGGT...TCCTGTCCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp GAGAAGAACAGGGCTGGGCCAGCCAAGGTGCTTTTTCCACCTGGTCCTAGAGCCGGGTCTCTGCCAGTTTaGCAATGTCTTCAGAGGCCA +
Preference number: 4 (lower is better)
Translates to: EKNRAGPAKVLFPPGPRAGSLPV*QCLQRP
Trigger: TGGCCTCTGAAGACATTGCCAAACTGGCAGAGACCC...GGCTCTAGGACCAGGTGGAAAAAGCACCTTGGCTGGCCCAGCCCTGTTCTTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp CTTTCTACCCTTCCCCTAGGCATCAATTCCCCACAGTGGACTTGGGTTAGTCCAGGACAGCACGGGAGCTaGCTCCCCACTGTTAGGGTC +
Preference number: 4 (lower is better)
Translates to: LSTLPLGINSPQWTWVSPGQHGS*LPTVRV
Trigger: GACCCTAACAGTGGGGAGCCAGCTCCCGTGCTGTCC...TGGACTAACCCAAGTCCACTGTGGGGAATTGATGCCTAGGGGAAGGGTAGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp CTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGTCAGCACCGAGACCTTaGGACCCAGACGCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: LLFRHGGHSTQNSPGFGGSAPRP*DPDAAA
Trigger: AGCTGCTGCGTCTGGGTCCCAAGGTCTCGGTGCTGA...CCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp CAAGACCCTCAGTCACTGGGGCAGGGCGAGGGACAAGAAGCAGCTGCCTTTAAAGTCTGCAGCAGATTGTaGCGGGCAAAGGAGCAGGTT +
Preference number: 4 (lower is better)
Translates to: QDPQSLGQGEGQEAAAFKVCSRL*RAKEQV
Trigger: AACCTGCTCCTTTGCCCGCCACAATCTGCTGCAGAC...TTTAAAGGCAGCTGCTTCTTGTCCCTCGCCCTGCCCCAGTGACTGAGGGTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGGCACTGGACTTGCGGTaGCACTCAGTCAGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: LLFRHGGHSTQNSPGFGGALDLR*HSVRAA
Trigger: AGCAGCTCTGACTGAGTGTCACCGCAAGTCCAGTGC...CCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp TTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGACAGGACTTGGGCACTGGACTTaGGGTGACACTCAGTCAGAG +
Preference number: 4 (lower is better)
Translates to: FRHGGHSTQNSPGFGGTGLGHWT*GDTQSE
Trigger: CTCTGACTGAGTGTCACCGCAAGTCCAGTGCCCAAG...TCCTGTCCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp CAGCCCAGACACACAACACAACGGGAAGTAGGAGGTGGCCAAGCAGCCACTTCGAAAAGCTTCTGCCAGTaGAGTGGCTCCGTCATTCTC +
Preference number: 4 (lower is better)
Translates to: QPRHTTQREVGGGQAATSKSFCQ*SGSVIL
Trigger: GAGAATGACGGAGCCACTGCACTGGCAGAAGCTTTT...CGAAGTGGCTGCTTGGCCACCTCCTACTTCCCGTTGTGTTGTGTGTCTGGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR GCA 90 bp CTCTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGTCCCCTGACCCTCTCTaGGGAGGCTCTTCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: LCYLGTVDTAHRIPQALVSPDPL*GGSSSS
Trigger: GGAAGAGGAAGAGCCTCCGCAGAGAGGGTCAGGGGA...CACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp TTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGACAGGATGCCAAGAGCAGGGGTaGAAGGGCCTTGGGGAAATA +
Preference number: 4 (lower is better)
Translates to: FRHGGHSTQNSPGFGGTGCQEQG*KGLGEI
Trigger: TATTTCCCCAAGGCCCTTGCACCCCTGCTCTTGGCA...TCCTGTCCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp CTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGCTTCTGCCAGTGCAGTaGCTCCGTCATTCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: LLFRHGGHSTQNSPGFGGLLPVQ*LRHSPG
Trigger: GCCTGGAGAATGACGGAGCCACTGCACTGGCAGAAG...CCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp CTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGTTGATGGCAAAGGCCTaGGCCAGGGCTGTGACACCA +
Preference number: 4 (lower is better)
Translates to: LLFRHGGHSTQNSPGFGGLMAKA*ARAVTP
Trigger: TGGTGTCACAGCCCTGGCCCAGGCCTTTGCCATCAA...CCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp CACACAACACAACGGGAAGTAGGAGGTGGCCAAGCAGCCACTTCGGGAAGTCACTTGAGCAGACCCATGTaGATGAGCAGCCTGGTAAGG +
Preference number: 4 (lower is better)
Translates to: HTTQREVGGGQAATSGSHLSRPM*MSSLVR
Trigger: CCTTACCAGGCTGCTCATCCACATGGGTCTGCTCAA...GTGACTTCCCGAAGTGGCTGCTTGGCCACCTCCTACTTCCCGTTGTGTTGTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR TCA 90 bp CTTTCTACCCTTCCCCTAGGCATCAATTCCCCACAGTGGACTTGGGTTAGTCCACGAGGGCATTGCCATTaGGGTCCAGCTTCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: LSTLPLGINSPQWTWVSPRGHCH*GPASPA
Trigger: AGCTGGAGAAGCTGGACCTCAATGGCAATGCCCTCG...TGGACTAACCCAAGTCCACTGTGGGGAATTGATGCCTAGGGGAAGGGTAGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CTCTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGCTGTCCATCACCTCCTaGAGCTGCTCACAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: LCYLGTVDTAHRIPQALVLSITS*SCSQPS
Trigger: AGAGGGCTGTGAGCAGCTTCAGGAGGTGATGGACAG...CACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp CAGCCCAGACACACAACACAACGGGAAGTAGGAGGTGGCCAAGCAGCCACTTCGTTTAGCCAGGGTCTCTaGCAGTTTGGCAATGTCTTC +
Preference number: 4 (lower is better)
Translates to: QPRHTTQREVGGGQAATSFSQGL*QFGNVF
Trigger: GAAGACATTGCCAAACTGGCAGAGACCCTGGCTAAA...CGAAGTGGCTGCTTGGCCACCTCCTACTTCCCGTTGTGTTGTGTGTCTGGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR GCA 90 bp AGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTTCAGGGCCAGGGGCTTaGCTTGGGCACTGGACTTGC +
Preference number: 4 (lower is better)
Translates to: SISYPAPSLLHTPVLENPSGPGA*LGHWTC
Trigger: GCAAGTCCAGTGCCCAAGGCAAGCCCCTGGCCCTGA...AGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp CACACAACACAACGGGAAGTAGGAGGTGGCCAAGCAGCCACTTCGGGAAGTCACAACATGTCACTCCAGTaGCATCGCTTCAGCTCAGAC +
Preference number: 4 (lower is better)
Translates to: HTTQREVGGGQAATSGSHNMSLQ*HRFSSD
Trigger: GTCTGAGCTGAAGCGATGCCACTGGAGTGACATGTT...GTGACTTCCCGAAGTGGCTGCTTGGCCACCTCCTACTTCCCGTTGTGTTGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp CTTTCTACCCTTCCCCTAGGCATCAATTCCCCACAGTGGACTTGGGTTAGTCCATTGATGGCAAAGGCCTaGGCCAGGGCTGTGACACCA +
Preference number: 4 (lower is better)
Translates to: LSTLPLGINSPQWTWVSPLMAKA*ARAVTP
Trigger: TGGTGTCACAGCCCTGGCCCAGGCCTTTGCCATCAA...TGGACTAACCCAAGTCCACTGTGGGGAATTGATGCCTAGGGGAAGGGTAGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp AGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACACGGACAGCACGGGAGCTaGCTCCCCACTGTTAGGGTC +
Preference number: 4 (lower is better)
Translates to: REMKICNPDRKYIPTHTHGQHGS*LPTVRV
Trigger: GACCCTAACAGTGGGGAGCCAGCTCCCGTGCTGTCC...GTGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp AAAATATCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCATCAGCACCGAGACCTTaGGACCCAGACGCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: KISNGDAGRAQSIQDPQSSAPRP*DPDAAA
Trigger: AGCTGCTGCGTCTGGGTCCCAAGGTCTCGGTGCTGA...TGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CAGACAGGAAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGCTAAGGCCTTGGCGATaGCTCTGGCCGCTTCCACGC +
Preference number: 4 (lower is better)
Translates to: QTGSTYPHTHTKPTQYQRLRPWR*LWPLPR
Trigger: GCGTGGAAGCGGCCAGAGTCATCGCCAAGGCCTTAG...CCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTTCCTGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CTCTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGACCGAAGCCTTCCTGTaGACATGTCACTCCAGTGGC +
Preference number: 4 (lower is better)
Translates to: LCYLGTVDTAHRIPQALVTEAFL*TCHSSG
Trigger: GCCACTGGAGTGACATGTTCACAGGAAGGCTTCGGT...CACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CAGACAGGAAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGCTCGCAACAGGGGGTTaGTGGCAAAGGCCTGGGCCA +
Preference number: 4 (lower is better)
Translates to: QTGSTYPHTHTKPTQYQRLATGG*WQRPGP
Trigger: TGGCCCAGGCCTTTGCCATCAACCCCCTGTTGCGAG...CCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTTCCTGTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CAAACCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTCGCAACAGGGGGTTaGTGGCAAAGGCCTGGGCCA +
Preference number: 4 (lower is better)
Translates to: QTNTVSKDQYDTGDKTLSLATGG*WQRPGP
Trigger: TGGCCCAGGCCTTTGCCATCAACCCCCTGTTGCGAG...GGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp AGGAGACAAGACCCTCTCCCTTCCTCTGGTCAAAATATCCAATGGAGATGCTGGCTGTCCATCACCTCCTaGAGCTGCTCACAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: RRQDPLPSSGQNIQWRCWLSITS*SCSQPS
Trigger: AGAGGGCTGTGAGCAGCTTCAGGAGGTGATGGACAG...CCAGCATCTCCATTGGATATTTTGACCAGAGGAAGGGAGAGGGTCTTGTCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CAGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACACTCTGGGGAGGGGAATaGCAGGAAGGTGGAGAGGTC +
Preference number: 4 (lower is better)
Translates to: QGDEDLQSRQEVHTHTHTLWGGE*QEGGEV
Trigger: GACCTCTCCACCTTCCTGTCATTCCCCTCCCCAGAG...TGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp CAGACAGGAAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGTCAGGGCCAGGGGCTTaGCTTGGGCACTGGACTTGC +
Preference number: 4 (lower is better)
Translates to: QTGSTYPHTHTKPTQYQRSGPGA*LGHWTC
Trigger: GCAAGTCCAGTGCCCAAGGCAAGCCCCTGGCCCTGA...CCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTTCCTGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp AGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACACTCCCCTGACCCTCTCTaGGGAGGCTCTTCCTCTTCC +
Preference number: 4 (lower is better)
Translates to: REMKICNPDRKYIPTHTHSPDPL*GGSSSS
Trigger: GGAAGAGGAAGAGCCTCCGCAGAGAGGGTCAGGGGA...GTGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp AAAATATCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCATCAGCTCCTTTAGCTTaGGCAGGCCACCACGGACAG +
Preference number: 4 (lower is better)
Translates to: KISNGDAGRAQSIQDPQSSAPLA*AGHHGQ
Trigger: CTGTCCGTGGTGGCCTGCCCAAGCTAAAGGAGCTGA...TGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp CAGGAAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGACCAGGACAGCACGGGAGCTaGCTCCCCACTGTTAGGGTC +
Preference number: 4 (lower is better)
Translates to: QEVHTHTHTPNQHSIKGPGQHGS*LPTVRV
Trigger: GACCCTAACAGTGGGGAGCCAGCTCCCGTGCTGTCC...TGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp CAGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACAAGGTGGAGAGGTCTGTaGGAGTCGGGGAGGACAGCA +
Preference number: 4 (lower is better)
Translates to: QGDEDLQSRQEVHTHTHTRWRGL*ESGRTA
Trigger: TGCTGTCCTCCCCGACTCCCACAGACCTCTCCACCT...TGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp AGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTCGAGGGCATTGCCATTaGGGTCCAGCTTCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: SISYPAPSLLHTPVLENPRGHCH*GPASPA
Trigger: AGCTGGAGAAGCTGGACCTCAATGGCAATGCCCTCG...AGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR TCA 90 bp CAGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACACTGTCCATCACCTCCTaGAGCTGCTCACAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: QGDEDLQSRQEVHTHTHTLSITS*SCSQPS
Trigger: AGAGGGCTGTGAGCAGCTTCAGGAGGTGATGGACAG...TGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCCTCCCTCATCATCACTaGGGGATGCCAGCACCTTGG +
Preference number: 4 (lower is better)
Translates to: PTQYQRTNMTQETRPSPFLPHHH*GMPAPW
Trigger: CCAAGGTGCTGGCATCCCTCAGTGATGATGAGGGAG...GAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp CTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGAAAAGCTTCTGCCAGTaGAGTGGCTCCGTCATTCTC +
Preference number: 4 (lower is better)
Translates to: LLFRHGGHSTQNSPGFGGKSFCQ*SGSVIL
Trigger: GAGAATGACGGAGCCACTGCACTGGCAGAAGCTTTT...CCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp AAAATATCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCACCGTTCTGTGGCATATaGACCTCTTCCAGAGTCCCG +
Preference number: 4 (lower is better)
Translates to: KISNGDAGRAQSIQDPQSPFCGI*TSSRVP
Trigger: CGGGACTCTGGAAGAGGTGCATATGCCACAGAACGG...TGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp AGGAGACAAGACCCTCTCCCTTCCTCTGGTCAAAATATCCAATGGAGATGCTGGCCGTTCTGTGGCATATaGACCTCTTCCAGAGTCCCG +
Preference number: 4 (lower is better)
Translates to: RRQDPLPSSGQNIQWRCWPFCGI*TSSRVP
Trigger: CGGGACTCTGGAAGAGGTGCATATGCCACAGAACGG...CCAGCATCTCCATTGGATATTTTGACCAGAGGAAGGGAGAGGGTCTTGTCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp TTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGACAGGAATCATCACTGAGGGATaGCAGCACCTTGGCCATATT +
Preference number: 4 (lower is better)
Translates to: FRHGGHSTQNSPGFGGTGIITEG*QHLGHI
Trigger: AATATGGCCAAGGTGCTGGCATCCCTCAGTGATGAT...TCCTGTCCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp ACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCCTCGCTTGCCTTGGGCACTaGACTTGCGGTGACACTCAG +
Preference number: 4 (lower is better)
Translates to: TQYQRTNMTQETRPSPFLACLGH*TCGDTQ
Trigger: CTGAGTGTCACCGCAAGTCCAGTGCCCAAGGCAAGC...GAGGAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp AAACCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTCAGCACCGAGACCTTaGGACCCAGACGCAGCAGCT +
Preference number: 4 (lower is better)
Translates to: KPTQYQRTNMTQETRPSPSAPRP*DPDAAA
Trigger: AGCTGCTGCGTCTGGGTCCCAAGGTCTCGGTGCTGA...GGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp AGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTTCCTGCCTCACCACGTaGTTCAACACCATCAGGGGG +
Preference number: 4 (lower is better)
Translates to: SISYPAPSLLHTPVLENPSCLTT*FNTIRG
Trigger: CCCCCTGATGGTGTTGAACCACGTGGTGAGGCAGGA...AGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp AGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACACTCCTGCCTCACCACGTaGTTCAACACCATCAGGGGG +
Preference number: 4 (lower is better)
Translates to: REMKICNPDRKYIPTHTHSCLTT*FNTIRG
Trigger: CCCCCTGATGGTGTTGAACCACGTGGTGAGGCAGGA...GTGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp TGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATTCCTCGCAACAGGGGGTTaGTGGCAAAGGCCTGGGCCA +
Preference number: 4 (lower is better)
Translates to: WPKFNNKAAFYPSPRHQFLATGG*WQRPGP
Trigger: TGGCCCAGGCCTTTGCCATCAACCCCCTGTTGCGAG...GAATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGGGCAGTCTCCAAAATTaGTCACTTCCACTTGTCGCA +
Preference number: 4 (lower is better)
Translates to: LLFRHGGHSTQNSPGFGGGSLQN*SLPLVA
Trigger: TGCGACAAGTGGAAGTGATCAATTTTGGAGACTGCC...CCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp AAACCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCCGAGGGCATTGCCATTaGGGTCCAGCTTCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: KPTQYQRTNMTQETRPSPRGHCH*GPASPA
Trigger: AGCTGGAGAAGCTGGACCTCAATGGCAATGCCCTCG...GGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp ACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCCTCCAGTTCCACCAGCTGTaGTCCTGCAGTGATGAGTCC +
Preference number: 4 (lower is better)
Translates to: TQYQRTNMTQETRPSPFLQFHQL*SCSDES
Trigger: GGACTCATCACTGCAGGAGCACAGCTGGTGGAACTG...GAGGAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp GAGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCACACTCAGTCAGAGCTaGTGCCAGAATCTTGCCACC +
Preference number: 4 (lower is better)
Translates to: EHLLPGSIPITHSCLRKPTLSQS*CQNLAT
Trigger: GGTGGCAAGATTCTGGCAGCAGCTCTGACTGAGTGT...GGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR GCA 90 bp AGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACACCTTGGGCACTGGACTTaGGGTGACACTCAGTCAGAG +
Preference number: 4 (lower is better)
Translates to: REMKICNPDRKYIPTHTHLGHWT*GDTQSE
Trigger: CTCTGACTGAGTGTCACCGCAAGTCCAGTGCCCAAG...GTGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp AGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTCCGTTCTGTGGCATATaGACCTCTTCCAGAGTCCCG +
Preference number: 4 (lower is better)
Translates to: SISYPAPSLLHTPVLENPPFCGI*TSSRVP
Trigger: CGGGACTCTGGAAGAGGTGCATATGCCACAGAACGG...AGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR GCA 90 bp CAGACAGGAAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGACCACGGACAGCATCTaGGATGGCAACGGCACCCTT +
Preference number: 4 (lower is better)
Translates to: QTGSTYPHTHTKPTQYQRTTDSI*DGNGTL
Trigger: AAGGGTGCCGTTGCCATCGCAGATGCTGTCCGTGGT...CCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTTCCTGTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp AGGAGACAAGACCCTCTCCCTTCCTCTGGTCAAAATATCCAATGGAGATGCTGGTCGGAGGTATCAGTCTaGTGGACTATCAGCACCGAG +
Preference number: 4 (lower is better)
Translates to: RRQDPLPSSGQNIQWRCWSEVSV*WTISTE
Trigger: CTCGGTGCTGATAGTCCAGCAGACTGATACCTCCGA...CCAGCATCTCCATTGGATATTTTGACCAGAGGAAGGGAGAGGGTCTTGTCTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp CAGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACATGCCAAGAGCAGGGGTaGAAGGGCCTTGGGGAAATA +
Preference number: 4 (lower is better)
Translates to: QGDEDLQSRQEVHTHTHTCQEQG*KGLGEI
Trigger: TATTTCCCCAAGGCCCTTGCACCCCTGCTCTTGGCA...TGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp AAACCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCCTTCTGCCAGTGCAGTaGCTCCGTCATTCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: KPTQYQRTNMTQETRPSPLLPVQ*LRHSPG
Trigger: GCCTGGAGAATGACGGAGCCACTGCACTGGCAGAAG...GGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp TCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTCAGAGAGGAATGACAGGAAGGTaGAGAGGTCTGTGGGAGTCG +
Preference number: 4 (lower is better)
Translates to: SYPAPSLLHTPVLENPQRGMTGR*RGLWES
Trigger: CGACTCCCACAGACCTCTCCACCTTCCTGTCATTCC...TCTCTGAGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp ACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCCTCGGAATGACAGGAAGGTaGAGAGGTCTGTGGGAGTCG +
Preference number: 4 (lower is better)
Translates to: TQYQRTNMTQETRPSPFLGMTGR*RGLWES
Trigger: CGACTCCCACAGACCTCTCCACCTTCCTGTCATTCC...GAGGAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp GAGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTTGAGCAGACCCATGTaGATGAGCAGCCTGGTAAGG +
Preference number: 4 (lower is better)
Translates to: EHLLPGSIPITHSCLRKPLSRPM*MSSLVR
Trigger: CCTTACCAGGCTGCTCATCCACATGGGTCTGCTCAA...GGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CCA 90 bp CCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCGTCTGCAGCAGATTGTaGCGGGCAAAGGAGCAGGTT +
Preference number: 4 (lower is better)
Translates to: PTQYQRTNMTQETRPSPFVCSRL*RAKEQV
Trigger: AACCTGCTCCTTTGCCCGCCACAATCTGCTGCAGAC...GAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CTTTCTACCCTTCCCCTAGGCATCAATTCCCCACAGTGGACTTGGGTTAGTCCAGGCAGTCTCCAAAATTaGTCACTTCCACTTGTCGCA +
Preference number: 4 (lower is better)
Translates to: LSTLPLGINSPQWTWVSPGSLQN*SLPLVA
Trigger: TGCGACAAGTGGAAGTGATCAATTTTGGAGACTGCC...TGGACTAACCCAAGTCCACTGTGGGGAATTGATGCCTAGGGGAAGGGTAGAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp CAGGAAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGACCAGATCCCAAAAGCTTCTaGCAGTGCAGTGGCTCCGTC +
Preference number: 4 (lower is better)
Translates to: QEVHTHTHTPNQHSIKGPDPKSF*QCSGSV
Trigger: GACGGAGCCACTGCACTGGCAGAAGCTTTTGGGATC...TGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp CTCTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGATCATCACTGAGGGATaGCAGCACCTTGGCCATATT +
Preference number: 4 (lower is better)
Translates to: LCYLGTVDTAHRIPQALVIITEG*QHLGHI
Trigger: AATATGGCCAAGGTGCTGGCATCCCTCAGTGATGAT...CACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp GTTGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATGCACTGGACTTGCGGTaGCACTCAGTCAGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: VGLSLITKQLSTLPLGINALDLR*HSVRAA
Trigger: AGCAGCTCTGACTGAGTGTCACCGCAAGTCCAGTGC...ATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp TGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATTCGCACTGGACTTGCGGTaGCACTCAGTCAGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: WPKFNNKAAFYPSPRHQFALDLR*HSVRAA
Trigger: AGCAGCTCTGACTGAGTGTCACCGCAAGTCCAGTGC...GAATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp TCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTCAGAGACCCCACCCTTCTCAGTaGAGGTGTTGTCATTTAGGT +
Preference number: 4 (lower is better)
Translates to: SYPAPSLLHTPVLENPQRPHPSQ*RCCHLG
Trigger: ACCTAAATGACAACACCTTCACTGAGAAGGGTGGGG...TCTCTGAGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR TCA 90 bp CAGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACACCCCACCCTTCTCAGTaGAGGTGTTGTCATTTAGGT +
Preference number: 4 (lower is better)
Translates to: QGDEDLQSRQEVHTHTHTPHPSQ*RCCHLG
Trigger: ACCTAAATGACAACACCTTCACTGAGAAGGGTGGGG...TGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CAGACAGGAAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGCACCTTCAGGAAGGCTaGAACAACCTTCTCTGGGTC +
Preference number: 4 (lower is better)
Translates to: QTGSTYPHTHTKPTQYQRHLQEG*NNLLWV
Trigger: GACCCAGAGAAGGTTGTTTCAGCCTTCCTGAAGGTG...CCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTTCCTGTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp GTTGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATACCACGGACAGCATCTaGGATGGCAACGGCACCCTT +
Preference number: 4 (lower is better)
Translates to: VGLSLITKQLSTLPLGINTTDSI*DGNGTL
Trigger: AAGGGTGCCGTTGCCATCGCAGATGCTGTCCGTGGT...ATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp CAGACAGGAAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGGGGCTTTGTCACAAATaGCAAGAGCAGGGGTGCAAG +
Preference number: 4 (lower is better)
Translates to: QTGSTYPHTHTKPTQYQRGLCHK*QEQGCK
Trigger: CTTGCACCCCTGCTCTTGGCATTTGTGACAAAGCCC...CCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTTCCTGTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp AAACCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCGGGTCTCTGCCAGTTTaGCAATGTCTTCAGAGGCCA +
Preference number: 4 (lower is better)
Translates to: KPTQYQRTNMTQETRPSPGSLPV*QCLQRP
Trigger: TGGCCTCTGAAGACATTGCCAAACTGGCAGAGACCC...GGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp CCCACACACACACACCAAACCAACACAGTATCAAAGGACCAATATGACACAGGAGGGTCTCTGCCAGTTTaGCAATGTCTTCAGAGGCCA +
Preference number: 4 (lower is better)
Translates to: PTHTHQTNTVSKDQYDTGGSLPV*QCLQRP
Trigger: TGGCCTCTGAAGACATTGCCAAACTGGCAGAGACCC...TCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp TGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATTCTCAGCTCCTTTAGCTTaGGCAGGCCACCACGGACAG +
Preference number: 4 (lower is better)
Translates to: WPKFNNKAAFYPSPRHQFSAPLA*AGHHGQ
Trigger: CTGTCCGTGGTGGCCTGCCCAAGCTAAAGGAGCTGA...GAATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp CAAACCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCTTGAGCAGACCCATGTaGATGAGCAGCCTGGTAAGG +
Preference number: 4 (lower is better)
Translates to: QTNTVSKDQYDTGDKTLSLSRPM*MSSLVR
Trigger: CCTTACCAGGCTGCTCATCCACATGGGTCTGCTCAA...GGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp GTTGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATACCGAAGCCTTCCTGTaGACATGTCACTCCAGTGGC +
Preference number: 4 (lower is better)
Translates to: VGLSLITKQLSTLPLGINTEAFL*TCHSSG
Trigger: GCCACTGGAGTGACATGTTCACAGGAAGGCTTCGGT...ATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp AAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGACCAATATCTCCCTCATCATCACTaGGGGATGCCAGCACCTTGG +
Preference number: 4 (lower is better)
Translates to: KYIPTHTHQTNTVSKDQYLPHHH*GMPAPW
Trigger: CCAAGGTGCTGGCATCCCTCAGTGATGATGAGGGAG...ATATTGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp GTTGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATCAGTTCCACCAGCTGTaGTCCTGCAGTGATGAGTCC +
Preference number: 4 (lower is better)
Translates to: VGLSLITKQLSTLPLGINQFHQL*SCSDES
Trigger: GGACTCATCACTGCAGGAGCACAGCTGGTGGAACTG...ATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp AGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACACATCATCACTGAGGGATaGCAGCACCTTGGCCATATT +
Preference number: 4 (lower is better)
Translates to: REMKICNPDRKYIPTHTHIITEG*QHLGHI
Trigger: AATATGGCCAAGGTGCTGGCATCCCTCAGTGATGAT...GTGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CCA 90 bp AAACCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCAACATGTCACTCCAGTaGCATCGCTTCAGCTCAGAC +
Preference number: 4 (lower is better)
Translates to: KPTQYQRTNMTQETRPSPNMSLQ*HRFSSD
Trigger: GTCTGAGCTGAAGCGATGCCACTGGAGTGACATGTT...GGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR TCA 90 bp CAGACAGGAAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGGGCAGTCTCCAAAATTaGTCACTTCCACTTGTCGCA +
Preference number: 4 (lower is better)
Translates to: QTGSTYPHTHTKPTQYQRGSLQN*SLPLVA
Trigger: TGCGACAAGTGGAAGTGATCAATTTTGGAGACTGCC...CCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTTCCTGTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp CCCACACACACACACCAAACCAACACAGTATCAAAGGACCAATATGACACAGGATTTAGCCAGGGTCTCTaGCAGTTTGGCAATGTCTTC +
Preference number: 4 (lower is better)
Translates to: PTHTHQTNTVSKDQYDTGFSQGL*QFGNVF
Trigger: GAAGACATTGCCAAACTGGCAGAGACCCTGGCTAAA...TCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp AAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGACCAATATTGCCAAGAGCAGGGGTaGAAGGGCCTTGGGGAAATA +
Preference number: 4 (lower is better)
Translates to: KYIPTHTHQTNTVSKDQYCQEQG*KGLGEI
Trigger: TATTTCCCCAAGGCCCTTGCACCCCTGCTCTTGGCA...ATATTGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp TGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATTCGGGCTTTGTCACAAATaGCAAGAGCAGGGGTGCAAG +
Preference number: 4 (lower is better)
Translates to: WPKFNNKAAFYPSPRHQFGLCHK*QEQGCK
Trigger: CTTGCACCCCTGCTCTTGGCATTTGTGACAAAGCCC...GAATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR GCA 90 bp AAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGACCAATATTCGGAGGTATCAGTCTaGTGGACTATCAGCACCGAG +
Preference number: 4 (lower is better)
Translates to: KYIPTHTHQTNTVSKDQYSEVSV*WTISTE
Trigger: CTCGGTGCTGATAGTCCAGCAGACTGATACCTCCGA...ATATTGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS TCA 90 bp GTTAGGGTCCAGGATCTTCCTCGAGGGTGTAGCCGGCTCCTCCCCTaGCCCTCTCTGCGGAGGCTCTTCCTCTTCCTCCTGCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: VRVQDLPRGCSRLLP*PSLRRLFLFLLLLL
Trigger: GAGGAGGAGCAGGAGGAAGAGGAAGAGCCTCCGCAGAGAGGGTCAGGGGAGGAGCCGGCTACACCCTCGAGGAAGATCCTGGACCCTAAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCTTTTTAAGCAGGCTGGGCTCTaGAGGAGGGCCTCGAAGCCT +
Preference number: 5 (lower is better)
Translates to: LPFPPQEKNRAGPAKVLFKQAGL*RRASKP
Trigger: AGGCTTCGAGGCCCTCCTCAAGAGCCCAGCCTGCTT...AAAAAGCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS GCA 90 bp CCAGGCGATTTCTGCCAGCCACAAACACCTTCAGGGCCAGGGGCTTaGCTTGGGCACTGGACTTGCGGTGACACTCAGTCAGAGCTGCTG +
Preference number: 5 (lower is better)
Translates to: PGDFCQPQTPSGPGA*LGHWTCGDTQSELL
Trigger: CAGCAGCTCTGACTGAGTGTCACCGCAAGTCCAGTGCCCAAGGCAAGCCCCTGGCCCTGAAGGTGTTTGTGGCTGGCAGAAATCGCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS-3UTR CAA 90 bp GGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCAGGCTGGGTATGGCCTaGATCTTGTCTTCACTCTTG +
Preference number: 5 (lower is better)
Translates to: GTCPSLPRRRTGLGQPRCRLGMA*ILSSLL
Trigger: CAAGAGTGAAGACAAGATCAAGGCCATACCCAGCCT...GCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS GCA 90 bp GCTCTTGAGGAGGGCCTCGAAGCCTCGCACTCCATCGGGTCCAAATaGGTTGTCACTGAGGTCCAGTTCCACCAGCTGTGCTCCTGCAGT +
Preference number: 5 (lower is better)
Translates to: ALEEGLEASHSIGSK*VVTEVQFHQLCSCS
Trigger: ACTGCAGGAGCACAGCTGGTGGAACTGGACCTCAGTGACAACGCATTTGGACCCGATGGAGTGCGAGGCTTCGAGGCCCTCCTCAAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
ENSMUST00000230726.2
CDS CCA 90 bp CTGGGTCGGAGGTATCAGTCTGCTGGACTATCAGCACCGAGACCTTaGGACCCAGACGCAGCAGCTTCTCTGGGGAGGGGAATGACAGGA +
Preference number: 5 (lower is better)
Translates to: LGRRYQSAGLSAPRP*DPDAAASLGRGMTG
Trigger: TCCTGTCATTCCCCTCCCCAGAGAAGCTGCTGCGTCTGGGTCCCAAGGTCTCGGTGCTGATAGTCCAGCAGACTGATACCTCCGACCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CCA 90 bp GCAGCAGATTGTGGCGGGCAAAGGAGCAGGTTTCCAGCGCGCCATTaGGCTTTGTCACAAATGCCAAGAGCAGGGGTGCAAGGGCCTTGG +
Preference number: 5 (lower is better)
Translates to: AADCGGQRSRFPARH*ALSQMPRAGVQGPW
Trigger: CCAAGGCCCTTGCACCCCTGCTCTTGGCATTTGTGACAAAGCCCAATGGCGCGCTGGAAACCTGCTCCTTTGCCCGCCACAATCTGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp GGTGGGACAGGAAGGCAGGGCAGACAGGACAGCCAACGGGGCCTATGGCTAAGTAGGGTCTCTGCCAGTTaGGCAATGTCTTCAGAGGCC +
Preference number: 5 (lower is better)
Translates to: GGTGRQGRQDSQRGLWLSRVSAS*AMSSEA
Trigger: GGCCTCTGAAGACATTGCCAAACTGGCAGAGACCCT...ACTTAGCCATAGGCCCCGTTGGCTGTCCTGTCTGCCCTGCCTTCCTGTCCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp GGTGGGACAGGAAGGCAGGGCAGACAGGACAGCCAACGGGGCCTATGGCTAAGTTTCTTCTCTAAGGCCTaGGCGATGACTCTGGCCGCT +
Preference number: 5 (lower is better)
Translates to: GGTGRQGRQDSQRGLWLSFFSKA*AMTLAA
Trigger: AGCGGCCAGAGTCATCGCCAAGGCCTTAGAGAAGAA...ACTTAGCCATAGGCCCCGTTGGCTGTCCTGTCTGCCCTGCCTTCCTGTCCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CAAGACCCTCAGTCACTGGGGCAGGGCGAGGGACAAGAAGCAGCTGCCTTTAAAACTCGCAACAGGGGGTaGATGGCAAAGGCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: QDPQSLGQGEGQEAAAFKTRNRG*MAKAWA
Trigger: GGCCCAGGCCTTTGCCATCAACCCCCTGTTGCGAGT...TTTAAAGGCAGCTGCTTCTTGTCCCTCGCCCTGCCCCAGTGACTGAGGGTCTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp GGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCCTGGTAAGGAAGGTGTaGGAATTGAAAGAGGAGCAG +
Preference number: 5 (lower is better)
Translates to: GTCPSLPRRRTGLGQPRCLVRKV*ELKEEQ
Trigger: CTGCTCCTCTTTCAATTCCAACACCTTCCTTACCAG...GCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS GCA 90 bp GGCAAAGGAGCAGGTTTCCAGCGCGCCATTGGGCTTTGTCACAAATaGCAAGAGCAGGGGTGCAAGGGCCTTGGGGAAATAGTCCTGCCT +
Preference number: 5 (lower is better)
Translates to: GKGAGFQRAIGLCHK*QEQGCKGLGEIVLP
Trigger: AGGCAGGACTATTTCCCCAAGGCCCTTGCACCCCTGCTCTTGGCATTTGTGACAAAGCCCAATGGCGCGCTGGAAACCTGCTCCTTTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CCA 90 bp AGGGGGTTGATGGCAAAGGCCTGGGCCAGGGCTGTGACACCAGGATaGTTAATTCCGTTCTGTGGCATATGCACCTCTTCCAGAGTCCCG +
Preference number: 5 (lower is better)
Translates to: RGLMAKAWARAVTPG*LIPFCGICTSSRVP
Trigger: CGGGACTCTGGAAGAGGTGCATATGCCACAGAACGGAATTAACCATCCTGGTGTCACAGCCCTGGCCCAGGCCTTTGCCATCAACCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS-3UTR CAA 90 bp GAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCACTGGGGCAGGGCGCCACAGTTGTTAAGCTaGAGTTCCTGTAGGGTGAAG +
Preference number: 5 (lower is better)
Translates to: EMLAELSPSKTLSHWGRAPQLLS*SSCRVK
Trigger: CTTCACCCTACAGGAACTCAAGCTTAACAACTGTGG...CGCCCTGCCCCAGTGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp GAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCACTGGGGCAGGGCGATGCCCATGCCACAGTaGTTAAGCTTGAGTTCCTGT +
Preference number: 5 (lower is better)
Translates to: EMLAELSPSKTLSHWGRAMPMPQ*LSLSSC
Trigger: ACAGGAACTCAAGCTTAACAACTGTGGCATGGGCAT...CGCCCTGCCCCAGTGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS GCA 90 bp TTCAGGAAGGCTGAAACAACCTTCTCTGGGTCGGAGGTATCAGTCTaGTGGACTATCAGCACCGAGACCTTGGGACCCAGACGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: FRKAETTFSGSEVSV*WTISTETLGPRRSS
Trigger: GCTGCTGCGTCTGGGTCCCAAGGTCTCGGTGCTGATAGTCCAGCAGACTGATACCTCCGACCCAGAGAAGGTTGTTTCAGCCTTCCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS GCA 90 bp TTCCAGCGCGCCATTGGGCTTTGTCACAAATGCCAAGAGCAGGGGTaGAAGGGCCTTGGGGAAATAGTCCTGCCTCACCACGTGGTTCAA +
Preference number: 5 (lower is better)
Translates to: FQRAIGLCHKCQEQG*KGLGEIVLPHHVVQ
Trigger: TTGAACCACGTGGTGAGGCAGGACTATTTCCCCAAGGCCCTTGCACCCCTGCTCTTGGCATTTGTGACAAAGCCCAATGGCGCGCTGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CCA 90 bp AGGAAGGCTGAAACAACCTTCTCTGGGTCGGAGGTATCAGTCTGCTaGACTATCAGCACCGAGACCTTGGGACCCAGACGCAGCAGCTTC +
Preference number: 5 (lower is better)
Translates to: RKAETTFSGSEVSVC*TISTETLGPRRSSF
Trigger: GAAGCTGCTGCGTCTGGGTCCCAAGGTCTCGGTGCTGATAGTCCAGCAGACTGATACCTCCGACCCAGAGAAGGTTGTTTCAGCCTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CTCTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGCTGCTGCCAGAATCTaGCCACCCCCGATGCCCATG +
Preference number: 5 (lower is better)
Translates to: LCYLGTVDTAHRIPQALVAAARI*PPPMPM
Trigger: CATGGGCATCGGGGGTGGCAAGATTCTGGCAGCAGC...CACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CTTTCTACCCTTCCCCTAGGCATCAATTCCCCACAGTGGACTTGGGTTAGTCCAGCTGCTGCCAGAATCTaGCCACCCCCGATGCCCATG +
Preference number: 5 (lower is better)
Translates to: LSTLPLGINSPQWTWVSPAAARI*PPPMPM
Trigger: CATGGGCATCGGGGGTGGCAAGATTCTGGCAGCAGC...TGGACTAACCCAAGTCCACTGTGGGGAATTGATGCCTAGGGGAAGGGTAGAAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp GGGACCTGCCCTTCCCTCCCCAGGAGAAGAACAGGGCTGGGCCAGCCAAGGTGCTTCTCAGTGAAGGTGTaGTCATTTAGGTTGATGACT +
Preference number: 5 (lower is better)
Translates to: GTCPSLPRRRTGLGQPRCFSVKV*SFRLMT
Trigger: AGTCATCAACCTAAATGACAACACCTTCACTGAGAA...GCACCTTGGCTGGCCCAGCCCTGTTCTTCTCCTGGGGAGGGAAGGGCAGGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CAA 90 bp CTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGTTCTCCAGCTCAGCCTaGTCGGCCACAGCCTCAGCA +
Preference number: 5 (lower is better)
Translates to: LLFRHGGHSTQNSPGFGGFSSSA*SATASA
Trigger: TGCTGAGGCTGTGGCCGACAAGGCTGAGCTGGAGAA...CCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CAAGACCCTCAGTCACTGGGGCAGGGCGAGGGACAAGAAGCAGCTGCCTTTAAAGTTTCCAGCGCGCCATaGGGCTTTGTCACAAATGCC +
Preference number: 5 (lower is better)
Translates to: QDPQSLGQGEGQEAAAFKVSSAP*GFVTNA
Trigger: GGCATTTGTGACAAAGCCCAATGGCGCGCTGGAAAC...TTTAAAGGCAGCTGCTTCTTGTCCCTCGCCCTGCCCCAGTGACTGAGGGTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS TCA 90 bp CCTTGTCGGCCACAGCCTCAGCAACAACCAGGGCAGCATCTCTCTTaGTTTCGCAGAACGACAGATTCAGCTCCTTTAGCTTGGGCAGGC +
Preference number: 5 (lower is better)
Translates to: PCRPQPQQQPGQHLS*FRRTTDSAPLAWAG
Trigger: GCCTGCCCAAGCTAAAGGAGCTGAATCTGTCGTTCTGCGAAATCAAGAGAGATGCTGCCCTGGTTGTTGCTGAGGCTGTGGCCGACAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS GCA 90 bp TGGCATATGCACCTCTTCCAGAGTCCCGATGATCCCAAAAGCTTCTaGCAGTGCAGTGGCTCCGTCATTCTCCAGGCGATTTCTGCCAGC +
Preference number: 5 (lower is better)
Translates to: WHMHLFQSPDDPKSF*QCSGSVILQAISAS
Trigger: GCTGGCAGAAATCGCCTGGAGAATGACGGAGCCACTGCACTGGCAGAAGCTTTTGGGATCATCGGGACTCTGGAAGAGGTGCATATGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS CCA 90 bp GGCCTGGGCCAGGGCTGTGACACCAGGATGGTTAATTCCGTTCTGTaGCATATGCACCTCTTCCAGAGTCCCGATGATCCCAAAAGCTTC +
Preference number: 5 (lower is better)
Translates to: GLGQGCDTRMVNSVL*HMHLFQSPDDPKSF
Trigger: GAAGCTTTTGGGATCATCGGGACTCTGGAAGAGGTGCATATGCCACAGAACGGAATTAACCATCCTGGTGTCACAGCCCTGGCCCAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS CCA 90 bp CATTGGGCTTTGTCACAAATGCCAAGAGCAGGGGTGCAAGGGCCTTaGGGAAATAGTCCTGCCTCACCACGTGGTTCAACACCATCAGGG +
Preference number: 5 (lower is better)
Translates to: HWALSQMPRAGVQGP*GNSPASPRGSTPSG
Trigger: CCCTGATGGTGTTGAACCACGTGGTGAGGCAGGACTATTTCCCCAAGGCCCTTGCACCCCTGCTCTTGGCATTTGTGACAAAGCCCAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp TTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGACAGGATTCTTCTCTAAGGCCTaGGCGATGACTCTGGCCGCT +
Preference number: 5 (lower is better)
Translates to: FRHGGHSTQNSPGFGGTGFFSKA*AMTLAA
Trigger: AGCGGCCAGAGTCATCGCCAAGGCCTTAGAGAAGAA...TCCTGTCCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp TCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCACTGGGGGTGTTGTCATTTAGGTaGATGACTCGCAACAGGGGG +
Preference number: 5 (lower is better)
Translates to: SNGDAGRAQSIQDPQSLGVLSFR*MTRNRG
Trigger: CCCCCTGTTGCGAGTCATCAACCTAAATGACAACAC...CCCCAGTGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS GCA 90 bp ATGCACCTCTTCCAGAGTCCCGATGATCCCAAAAGCTTCTGCCAGTaGAGTGGCTCCGTCATTCTCCAGGCGATTTCTGCCAGCCACAAA +
Preference number: 5 (lower is better)
Translates to: MHLFQSPDDPKSFCQ*SGSVILQAISASHK
Trigger: TTTGTGGCTGGCAGAAATCGCCTGGAGAATGACGGAGCCACTGCACTGGCAGAAGCTTTTGGGATCATCGGGACTCTGGAAGAGGTGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS CCA 90 bp TCATTTAGGTTGATGACTCGCAACAGGGGGTTGATGGCAAAGGCCTaGGCCAGGGCTGTGACACCAGGATGGTTAATTCCGTTCTGTGGC +
Preference number: 5 (lower is better)
Translates to: SFRLMTRNRGLMAKA*ARAVTPGWLIPFCG
Trigger: GCCACAGAACGGAATTAACCATCCTGGTGTCACAGCCCTGGCCCAGGCCTTTGCCATCAACCCCCTGTTGCGAGTCATCAACCTAAATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS-3UTR CAA 90 bp AAAATATCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCATCCACGCCCACCGTGTaGCCCTCCAATCGTAGAGCT +
Preference number: 5 (lower is better)
Translates to: KISNGDAGRAQSIQDPQSSTPTV*PSNRRA
Trigger: AGCTCTACGATTGGAGGGCAACACGGTGGGCGTGGA...TGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp TATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGACAGTTCTTCTCTAAGGCCTaGGCGATGACTCTGGCCGCT +
Preference number: 5 (lower is better)
Translates to: YLGTVDTAHRIPQALVGQFFSKA*AMTLAA
Trigger: AGCGGCCAGAGTCATCGCCAAGGCCTTAGAGAAGAA...CTGTCCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp TCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTCAGAGAAAGCAGGCTGGGCTCTaGAGGAGGGCCTCGAAGCCT +
Preference number: 5 (lower is better)
Translates to: SYPAPSLLHTPVLENPQRKQAGL*RRASKP
Trigger: AGGCTTCGAGGCCCTCCTCAAGAGCCCAGCCTGCTT...TCTCTGAGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CAA 90 bp CAGCCCAGACACACAACACAACGGGAAGTAGGAGGTGGCCAAGCAGCCACTTCGCCACAGTTGTTAAGCTaGAGTTCCTGTAGGGTGAAG +
Preference number: 5 (lower is better)
Translates to: QPRHTTQREVGGGQAATSPQLLS*SSCRVK
Trigger: CTTCACCCTACAGGAACTCAAGCTTAACAACTGTGG...CGAAGTGGCTGCTTGGCCACCTCCTACTTCCCGTTGTGTTGTGTGTCTGGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CAA 90 bp AGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTACTCGCAACAGGGGGTaGATGGCAAAGGCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: SISYPAPSLLHTPVLENPTRNRG*MAKAWA
Trigger: GGCCCAGGCCTTTGCCATCAACCCCCTGTTGCGAGT...AGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CAA 90 bp CAAGACCCTCAGTCACTGGGGCAGGGCGAGGGACAAGAAGCAGCTGCCTTTAAAGTGTTGTCATTTAGGTaGATGACTCGCAACAGGGGG +
Preference number: 5 (lower is better)
Translates to: QDPQSLGQGEGQEAAAFKVLSFR*MTRNRG
Trigger: CCCCCTGTTGCGAGTCATCAACCTAAATGACAACAC...TTTAAAGGCAGCTGCTTCTTGTCCCTCGCCCTGCCCCAGTGACTGAGGGTCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGTCTTCTCCGAGGGCATaGCCATTGAGGTCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: LLFRHGGHSTQNSPGFGGSSPRA*PLRSSF
Trigger: GAAGCTGGACCTCAATGGCAATGCCCTCGGAGAAGA...CCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp TATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGACAGGTTTCCAGCGCGCCATaGGGCTTTGTCACAAATGCC +
Preference number: 5 (lower is better)
Translates to: YLGTVDTAHRIPQALVGQVSSAP*GFVTNA
Trigger: GGCATTTGTGACAAAGCCCAATGGCGCGCTGGAAAC...CTGTCCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp AAAATATCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCAAGCGTCTGCAGCAGATaGTGGCGGGCAAAGGAGCAG +
Preference number: 5 (lower is better)
Translates to: KISNGDAGRAQSIQDPQSSVCSR*WRAKEQ
Trigger: CTGCTCCTTTGCCCGCCACAATCTGCTGCAGACGCT...TGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS TCA 90 bp CATCGATGGCATCCAGCACTGCGGTCTTTACTGAGGCGTCATCCCTaGACACAGATGCCACCTTCAGGAAGGCTGAAACAACCTTCTCTG +
Preference number: 5 (lower is better)
Translates to: HRWHPALRSLLRRHP*TQMPPSGRLKQPSL
Trigger: CAGAGAAGGTTGTTTCAGCCTTCCTGAAGGTGGCATCTGTGTTCAGGGATGACGCCTCAGTAAAGACCGCAGTGCTGGATGCCATCGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS GCA 90 bp GCCAGGGCTGTGACACCAGGATGGTTAATTCCGTTCTGTGGCATATaGACCTCTTCCAGAGTCCCGATGATCCCAAAAGCTTCTGCCAGT +
Preference number: 5 (lower is better)
Translates to: ARAVTPGWLIPFCGI*TSSRVPMIPKASAS
Trigger: ACTGGCAGAAGCTTTTGGGATCATCGGGACTCTGGAAGAGGTGCATATGCCACAGAACGGAATTAACCATCCTGGTGTCACAGCCCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS-3UTR CAA 90 bp CACACAACACAACGGGAAGTAGGAGGTGGCCAAGCAGCCACTTCGGGAAGTCACCCACAGTTGTTAAGCTaGAGTTCCTGTAGGGTGAAG +
Preference number: 5 (lower is better)
Translates to: HTTQREVGGGQAATSGSHPQLLS*SSCRVK
Trigger: CTTCACCCTACAGGAACTCAAGCTTAACAACTGTGG...GTGACTTCCCGAAGTGGCTGCTTGGCCACCTCCTACTTCCCGTTGTGTTGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CAA 90 bp CCCACACACACACACCAAACCAACACAGTATCAAAGGACCAATATGACACAGGAGCTGCTGCCAGAATCTaGCCACCCCCGATGCCCATG +
Preference number: 5 (lower is better)
Translates to: PTHTHQTNTVSKDQYDTGAAARI*PPPMPM
Trigger: CATGGGCATCGGGGGTGGCAAGATTCTGGCAGCAGC...TCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp AGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTAGCGTCTGCAGCAGATaGTGGCGGGCAAAGGAGCAG +
Preference number: 5 (lower is better)
Translates to: SISYPAPSLLHTPVLENPSVCSR*WRAKEQ
Trigger: CTGCTCCTTTGCCCGCCACAATCTGCTGCAGACGCT...AGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CAA 90 bp CAGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACAAGCGTCTGCAGCAGATaGTGGCGGGCAAAGGAGCAG +
Preference number: 5 (lower is better)
Translates to: QGDEDLQSRQEVHTHTHTSVCSR*WRAKEQ
Trigger: CTGCTCCTTTGCCCGCCACAATCTGCTGCAGACGCT...TGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS TCA 90 bp CTAGTGAGATCAGAGCTGGTGGGATCTCAGACCGAAGCCTTCCTGTaGACATGTCACTCCAGTGGCATCGCTTCAGCTCAGACTTCTTCT +
Preference number: 5 (lower is better)
Translates to: LVRSELVGSQTEAFL*TCHSSGIASAQTSS
Trigger: AGAAGAAGTCTGAGCTGAAGCGATGCCACTGGAGTGACATGTTCACAGGAAGGCTTCGGTCTGAGATCCCACCAGCTCTGATCTCACTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
ENSMUST00000230726.2
CDS-3UTR CAA 90 bp AAACCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTCCACGCCCACCGTGTaGCCCTCCAATCGTAGAGCT +
Preference number: 5 (lower is better)
Translates to: KPTQYQRTNMTQETRPSPSTPTV*PSNRRA
Trigger: AGCTCTACGATTGGAGGGCAACACGGTGGGCGTGGA...GGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGAGGGCAGCATCTCTCTaGATTTCGCAGAACGACAGA +
Preference number: 5 (lower is better)
Translates to: LLFRHGGHSTQNSPGFGGRAASL*ISQNDR
Trigger: TCTGTCGTTCTGCGAAATCAAGAGAGATGCTGCCCT...CCCACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp AAAATATCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCAAGGGATGCCAGCACCTaGGCCATATTGAAGCTGTCC +
Preference number: 5 (lower is better)
Translates to: KISNGDAGRAQSIQDPQSRDAST*AILKLS
Trigger: GGACAGCTTCAATATGGCCAAGGTGCTGGCATCCCT...TGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp TCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTCAGAGAAGGGTCTCTGCCAGTTaGGCAATGTCTTCAGAGGCC +
Preference number: 5 (lower is better)
Translates to: SYPAPSLLHTPVLENPQRRVSAS*AMSSEA
Trigger: GGCCTCTGAAGACATTGCCAAACTGGCAGAGACCCT...TCTCTGAGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CAA 90 bp AGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACACAGGGTCTCTGCCAGTTaGGCAATGTCTTCAGAGGCC +
Preference number: 5 (lower is better)
Translates to: REMKICNPDRKYIPTHTHRVSAS*AMSSEA
Trigger: GGCCTCTGAAGACATTGCCAAACTGGCAGAGACCCT...GTGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp GTTGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATAAGCAGGCTGGGCTCTaGAGGAGGGCCTCGAAGCCT +
Preference number: 5 (lower is better)
Translates to: VGLSLITKQLSTLPLGINKQAGL*RRASKP
Trigger: AGGCTTCGAGGCCCTCCTCAAGAGCCCAGCCTGCTT...ATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp ACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCCTCTCTTCTCCGAGGGCATaGCCATTGAGGTCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: TQYQRTNMTQETRPSPFLSSPRA*PLRSSF
Trigger: GAAGCTGGACCTCAATGGCAATGCCCTCGGAGAAGA...GAGGAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp AAAATATCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCAAGCACCTTGGCCATATaGAAGCTGTCCATCACCTCC +
Preference number: 5 (lower is better)
Translates to: KISNGDAGRAQSIQDPQSSTLAI*KLSITS
Trigger: GGAGGTGATGGACAGCTTCAATATGGCCAAGGTGCT...TGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp AGCATCTCTTACCCGGCTCCATCCCTATTACACACTCCTGTCTTAGAAAACCCTAGGGATGCCAGCACCTaGGCCATATTGAAGCTGTCC +
Preference number: 5 (lower is better)
Translates to: SISYPAPSLLHTPVLENPRDAST*AILKLS
Trigger: GGACAGCTTCAATATGGCCAAGGTGCTGGCATCCCT...AGGGTTTTCTAAGACAGGAGTGTGTAATAGGGATGGAGCCGGGTAAGAGATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
CDS-3UTR CAA 90 bp AGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACACGTTTCCAGCGCGCCATaGGGCTTTGTCACAAATGCC +
Preference number: 5 (lower is better)
Translates to: REMKICNPDRKYIPTHTHVSSAP*GFVTNA
Trigger: GGCATTTGTGACAAAGCCCAATGGCGCGCTGGAAAC...GTGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CCA 90 bp CTGGGTATGGCCTTGATCTTGTCTTCACTCTTGAGCAGACCCATGTaGATGAGCAGCCTGGTAAGGAAGGTGTTGGAATTGAAAGAGGAG +
Preference number: 5 (lower is better)
Translates to: LGMALILSSLLSRPM*MSSLVRKVLELKEE
Trigger: CTCCTCTTTCAATTCCAACACCTTCCTTACCAGGCTGCTCATCCACATGGGTCTGCTCAAGAGTGAAGACAAGATCAAGGCCATACCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp AAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGACCAATATACTCGCAACAGGGGGTaGATGGCAAAGGCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: KYIPTHTHQTNTVSKDQYTRNRG*MAKAWA
Trigger: GGCCCAGGCCTTTGCCATCAACCCCCTGTTGCGAGT...ATATTGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp TGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATTCTTCTCCAGCTCAGCCTaGTCGGCCACAGCCTCAGCA +
Preference number: 5 (lower is better)
Translates to: WPKFNNKAAFYPSPRHQFFSSSA*SATASA
Trigger: TGCTGAGGCTGTGGCCGACAAGGCTGAGCTGGAGAA...GAATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CAGGAAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGACCATCTTCTCCGAGGGCATaGCCATTGAGGTCCAGCTTC +
Preference number: 5 (lower is better)
Translates to: QEVHTHTHTPNQHSIKGPSSPRA*PLRSSF
Trigger: GAAGCTGGACCTCAATGGCAATGCCCTCGGAGAAGA...TGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CAAACCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCAGGGATGCCAGCACCTaGGCCATATTGAAGCTGTCC +
Preference number: 5 (lower is better)
Translates to: QTNTVSKDQYDTGDKTLSRDAST*AILKLS
Trigger: GGACAGCTTCAATATGGCCAAGGTGCTGGCATCCCT...GGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CTCTGTTATTTAGGCACGGTGGACACAGCACACAGAATTCCCCAGGCTTTGGTGGGTATGGCCTTGATCTaGTCTTCACTCTTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: LCYLGTVDTAHRIPQALVGMALI*SSLLSR
Trigger: TCTGCTCAAGAGTGAAGACAAGATCAAGGCCATACC...CACCAAAGCCTGGGGAATTCTGTGTGCTGTGTCCACCGTGCCTAAATAACAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp AGGAGACAAGACCCTCTCCCTTCCTCTGGTCAAAATATCCAATGGAGATGCTGGAGGCTGGGTATGGCCTaGATCTTGTCTTCACTCTTG +
Preference number: 5 (lower is better)
Translates to: RRQDPLPSSGQNIQWRCWRLGMA*ILSSLL
Trigger: CAAGAGTGAAGACAAGATCAAGGCCATACCCAGCCT...CCAGCATCTCCATTGGATATTTTGACCAGAGGAAGGGAGAGGGTCTTGTCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp AAAATATCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCAATGCCCATGCCACAGTaGTTAAGCTTGAGTTCCTGT +
Preference number: 5 (lower is better)
Translates to: KISNGDAGRAQSIQDPQSMPMPQ*LSLSSC
Trigger: ACAGGAACTCAAGCTTAACAACTGTGGCATGGGCAT...TGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCGTGTTGTCATTTAGGTaGATGACTCGCAACAGGGGG +
Preference number: 5 (lower is better)
Translates to: PTQYQRTNMTQETRPSPFVLSFR*MTRNRG
Trigger: CCCCCTGTTGCGAGTCATCAACCTAAATGACAACAC...GAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCAGGGCAGCATCTCTCTaGATTTCGCAGAACGACAGA +
Preference number: 5 (lower is better)
Translates to: PTQYQRTNMTQETRPSPFRAASL*ISQNDR
Trigger: TCTGTCGTTCTGCGAAATCAAGAGAGATGCTGCCCT...GAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CAGACAGGAAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGAGCACCTTGGCCATATaGAAGCTGTCCATCACCTCC +
Preference number: 5 (lower is better)
Translates to: QTGSTYPHTHTKPTQYQRSTLAI*KLSITS
Trigger: GGAGGTGATGGACAGCTTCAATATGGCCAAGGTGCT...CCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTTCCTGTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CAAACCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCAGCACCTTGGCCATATaGAAGCTGTCCATCACCTCC +
Preference number: 5 (lower is better)
Translates to: QTNTVSKDQYDTGDKTLSSTLAI*KLSITS
Trigger: GGAGGTGATGGACAGCTTCAATATGGCCAAGGTGCT...GGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp AAAATATCCAATGGAGATGCTGGCCGAGCTCAGTCCATCCAAGACCCTCAGTCATTTAGTTTGAGACCCTaGCCCTTAAAACTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: KISNGDAGRAQSIQDPQSFSLRP*PLKLSC
Trigger: GCAGCTGAGTTTTAAGGGCAAGGGTCTCAAACTAAA...TGACTGAGGGTCTTGGATGGACTGAGCTCGGCCAGCATCTCCATTGGATATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp ACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCCTCATGCCCATGCCACAGTaGTTAAGCTTGAGTTCCTGT +
Preference number: 5 (lower is better)
Translates to: TQYQRTNMTQETRPSPFLMPMPQ*LSLSSC
Trigger: ACAGGAACTCAAGCTTAACAACTGTGGCATGGGCAT...GAGGAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp CAGGGAGATGAAGATCTGCAATCCAGACAGGAAGTACATACCCACACACACACACTGGTAAGGAAGGTGTaGGAATTGAAAGAGGAGCAG +
Preference number: 5 (lower is better)
Translates to: QGDEDLQSRQEVHTHTHTLVRKV*ELKEEQ
Trigger: CTGCTCCTCTTTCAATTCCAACACCTTCCTTACCAG...TGTGTGTGTGTGGGTATGTACTTCCTGTCTGGATTGCAGATCTTCATCTCCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp ACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCCTCTTTAGTTTGAGACCCTaGCCCTTAAAACTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: TQYQRTNMTQETRPSPFLFSLRP*PLKLSC
Trigger: GCAGCTGAGTTTTAAGGGCAAGGGTCTCAAACTAAA...GAGGAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp AAACCAACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCGGTATGGCCTTGATCTaGTCTTCACTCTTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: KPTQYQRTNMTQETRPSPGMALI*SSLLSR
Trigger: TCTGCTCAAGAGTGAAGACAAGATCAAGGCCATACC...GGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGTTGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp GTTGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATAGGCTGGGTATGGCCTaGATCTTGTCTTCACTCTTG +
Preference number: 5 (lower is better)
Translates to: VGLSLITKQLSTLPLGINRLGMA*ILSSLL
Trigger: CAAGAGTGAAGACAAGATCAAGGCCATACCCAGCCT...ATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp ACACAGTATCAAAGGACCAATATGACACAGGAGACAAGACCCTCTCCCTTCCTCTTCTCAGTGAAGGTGTaGTCATTTAGGTTGATGACT +
Preference number: 5 (lower is better)
Translates to: TQYQRTNMTQETRPSPFLFSVKV*SFRLMT
Trigger: AGTCATCAACCTAAATGACAACACCTTCACTGAGAA...GAGGAAGGGAGAGGGTCTTGTCTCCTGTGTCATATTGGTCCTTTGATACTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp AAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGACCAATATAGGGCAGCATCTCTCTaGATTTCGCAGAACGACAGA +
Preference number: 5 (lower is better)
Translates to: KYIPTHTHQTNTVSKDQYRAASL*ISQNDR
Trigger: TCTGTCGTTCTGCGAAATCAAGAGAGATGCTGCCCT...ATATTGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp GTTGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATCTGGTAAGGAAGGTGTaGGAATTGAAAGAGGAGCAG +
Preference number: 5 (lower is better)
Translates to: VGLSLITKQLSTLPLGINLVRKV*ELKEEQ
Trigger: CTGCTCCTCTTTCAATTCCAACACCTTCCTTACCAG...ATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp AAGTACATACCCACACACACACACCAAACCAACACAGTATCAAAGGACCAATATGGTATGGCCTTGATCTaGTCTTCACTCTTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: KYIPTHTHQTNTVSKDQYGMALI*SSLLSR
Trigger: TCTGCTCAAGAGTGAAGACAAGATCAAGGCCATACC...ATATTGGTCCTTTGATACTGTGTTGGTTTGGTGTGTGTGTGTGGGTATGTACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS-3UTR CAA 90 bp TGGCCTAAGTTTAATAACAAAGCAGCTTTCTACCCTTCCCCTAGGCATCAATTCTTCTCAGTGAAGGTGTaGTCATTTAGGTTGATGACT +
Preference number: 5 (lower is better)
Translates to: WPKFNNKAAFYPSPRHQFFSVKV*SFRLMT
Trigger: AGTCATCAACCTAAATGACAACACCTTCACTGAGAA...GAATTGATGCCTAGGGGAAGGGTAGAAAGCTGCTTTGTTATTAAACTTAGGCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 90 bp GCGATTTCTGCCAGCCACAAACACCTTCAGGGCCAGGGGCTTGCCTaGGGCACTGGACTTGCGGTGACACTCAGTCAGAGCTGCTGCCAG +
Preference number: 6 (lower is better)
Translates to: AISASHKHLQGQGLA*GTGLAVTLSQSCCQ
Trigger: CTGGCAGCAGCTCTGACTGAGTGTCACCGCAAGTCCAGTGCCCAAGGCAAGCCCCTGGCCCTGAAGGTGTTTGTGGCTGGCAGAAATCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS TCA 72 bp AGGGCCAGGGGCTTGCCTTGGGCACTGGACTTGCGGTaGCACTCAGTCAGAGCTGCTGCCAGAATCTTGCCA +
Preference number: 6 (lower is better)
Translates to: RARGLPWALDLR*HSVRAAARILP
Trigger: TGGCAAGATTCTGGCAGCAGCTCTGACTGAGTGTCACCGCAAGTCCAGTGCCCAAGGCAAGCCCCTGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS GCA 72 bp GGCACTGGACTTGCGGTGACACTCAGTCAGAGCTGCTaGCAGAATCTTGCCACCCCCGATGCCCATGCCACA +
Preference number: 6 (lower is better)
Translates to: GTGLAVTLSQSC*QNLATPDAHAT
Trigger: TGTGGCATGGGCATCGGGGGTGGCAAGATTCTGGCAGCAGCTCTGACTGAGTGTCACCGCAAGTCCAGTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS GCA 72 bp TTGGGCACTGGACTTGCGGTGACACTCAGTCAGAGCTaGTGCCAGAATCTTGCCACCCCCGATGCCCATGCC +
Preference number: 6 (lower is better)
Translates to: LGTGLAVTLSQS*CQNLATPDAHA
Trigger: GGCATGGGCATCGGGGGTGGCAAGATTCTGGCAGCAGCTCTGACTGAGTGTCACCGCAAGTCCAGTGCCCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS GCA 72 bp CCTTCAGGGCCAGGGGCTTGCCTTGGGCACTGGACTTaGGGTGACACTCAGTCAGAGCTGCTGCCAGAATCT +
Preference number: 6 (lower is better)
Translates to: PSGPGACLGHWT*GDTQSELLPES
Trigger: AGATTCTGGCAGCAGCTCTGACTGAGTGTCACCGCAAGTCCAGTGCCCAAGGCAAGCCCCTGGCCCTGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS CAA 72 bp TTGGCGATGACTCTGGCCGCTTCCACGCCCACCGTGTaGCCCTCCAATCGTAGAGCTTCGAGGCCGTCAAAC +
Preference number: 6 (lower is better)
Translates to: LAMTLAASTPTV*PSNRRASRPSN
Trigger: GTTTGACGGCCTCGAAGCTCTACGATTGGAGGGCAACACGGTGGGCGTGGAAGCGGCCAGAGTCATCGCCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
ENSMUST00000230726.2
CDS CAA 72 bp GAGGTATCAGTCTGCTGGACTATCAGCACCGAGACCTaGGGACCCAGACGCAGCAGCTTCTCTGGGGAGGGG +
Preference number: 6 (lower is better)
Translates to: EVSVCWTISTET*GPRRSSFSGEG
Trigger: CCCCTCCCCAGAGAAGCTGCTGCGTCTGGGTCCCAAGGTCTCGGTGCTGATAGTCCAGCAGACTGATACCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 90 bp TCACTCCAGTGGCATCGCTTCAGCTCAGACTTCTTCTCTAAGGCCTaGGCGATGACTCTGGCCGCTTCCACGCCCACCGTGTTGCCCTCC +
Preference number: 6 (lower is better)
Translates to: SLQWHRFSSDFFSKA*AMTLAASTPTVLPS
Trigger: GGAGGGCAACACGGTGGGCGTGGAAGCGGCCAGAGTCATCGCCAAGGCCTTAGAGAAGAAGTCTGAGCTGAAGCGATGCCACTGGAGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
ENSMUST00000230726.2
CDS CAA 90 bp TCTGGGTCGGAGGTATCAGTCTGCTGGACTATCAGCACCGAGACCTaGGGACCCAGACGCAGCAGCTTCTCTGGGGAGGGGAATGACAGG +
Preference number: 6 (lower is better)
Translates to: SGSEVSVCWTISTET*GPRRSSFSGEGNDR
Trigger: CCTGTCATTCCCCTCCCCAGAGAAGCTGCTGCGTCTGGGTCCCAAGGTCTCGGTGCTGATAGTCCAGCAGACTGATACCTCCGACCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS GCA 72 bp TTCTGCCAGCCACAAACACCTTCAGGGCCAGGGGCTTaGCTTGGGCACTGGACTTGCGGTGACACTCAGTCA +
Preference number: 6 (lower is better)
Translates to: FCQPQTPSGPGA*LGHWTCGDTQS
Trigger: TGACTGAGTGTCACCGCAAGTCCAGTGCCCAAGGCAAGCCCCTGGCCCTGAAGGTGTTTGTGGCTGGCAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS CCA 72 bp AGGTATCAGTCTGCTGGACTATCAGCACCGAGACCTTaGGACCCAGACGCAGCAGCTTCTCTGGGGAGGGGA +
Preference number: 6 (lower is better)
Translates to: RYQSAGLSAPRP*DPDAAASLGRG
Trigger: TCCCCTCCCCAGAGAAGCTGCTGCGTCTGGGTCCCAAGGTCTCGGTGCTGATAGTCCAGCAGACTGATACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 72 bp TGGCATCGCTTCAGCTCAGACTTCTTCTCTAAGGCCTaGGCGATGACTCTGGCCGCTTCCACGCCCACCGTG +
Preference number: 6 (lower is better)
Translates to: WHRFSSDFFSKA*AMTLAASTPTV
Trigger: CACGGTGGGCGTGGAAGCGGCCAGAGTCATCGCCAAGGCCTTAGAGAAGAAGTCTGAGCTGAAGCGATGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
ENSMUST00000230726.2
CDS CAA 72 bp GCCTCGAAGCCTCGCACTCCATCGGGTCCAAATGCGTaGTCACTGAGGTCCAGTTCCACCAGCTGTGCTCCT +
Preference number: 6 (lower is better)
Translates to: ASKPRTPSGPNA*SLRSSSTSCAP
Trigger: AGGAGCACAGCTGGTGGAACTGGACCTCAGTGACAACGCATTTGGACCCGATGGAGTGCGAGGCTTCGAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
ENSMUST00000230726.2
CDS CAA 72 bp GGGCAAAGGAGCAGGTTTCCAGCGCGCCATTGGGCTTaGTCACAAATGCCAAGAGCAGGGGTGCAAGGGCCT +
Preference number: 6 (lower is better)
Translates to: GQRSRFPARHWA*SQMPRAGVQGP
Trigger: AGGCCCTTGCACCCCTGCTCTTGGCATTTGTGACAAAGCCCAATGGCGCGCTGGAAACCTGCTCCTTTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 90 bp TTGAGGAGGGCCTCGAAGCCTCGCACTCCATCGGGTCCAAATGCGTaGTCACTGAGGTCCAGTTCCACCAGCTGTGCTCCTGCAGTGATG +
Preference number: 6 (lower is better)
Translates to: LRRASKPRTPSGPNA*SLRSSSTSCAPAVM
Trigger: CATCACTGCAGGAGCACAGCTGGTGGAACTGGACCTCAGTGACAACGCATTTGGACCCGATGGAGTGCGAGGCTTCGAGGCCCTCCTCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
ENSMUST00000230726.2
CDS CAA 90 bp GCCAGAATCTTGCCACCCCCGATGCCCATGCCACAGTTGTTAAGCTaGAGTTCCTGTAGGGTGAAGCAGGCTGGGCTCTTGAGGAGGGCC +
Preference number: 6 (lower is better)
Translates to: ARILPPPMPMPQLLS*SSCRVKQAGLLRRA
Trigger: GGCCCTCCTCAAGAGCCCAGCCTGCTTCACCCTACAGGAACTCAAGCTTAACAACTGTGGCATGGGCATCGGGGGTGGCAAGATTCTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS CAA 90 bp TGCAGCAGATTGTGGCGGGCAAAGGAGCAGGTTTCCAGCGCGCCATaGGGCTTTGTCACAAATGCCAAGAGCAGGGGTGCAAGGGCCTTG +
Preference number: 6 (lower is better)
Translates to: CSRLWRAKEQVSSAP*GFVTNAKSRGARAL
Trigger: CAAGGCCCTTGCACCCCTGCTCTTGGCATTTGTGACAAAGCCCAATGGCGCGCTGGAAACCTGCTCCTTTGCCCGCCACAATCTGCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 90 bp TCTAAGGCCTTGGCGATGACTCTGGCCGCTTCCACGCCCACCGTGTaGCCCTCCAATCGTAGAGCTTCGAGGCCGTCAAACTCTTCAATC +
Preference number: 6 (lower is better)
Translates to: SKALAMTLAASTPTV*PSNRRASRPSNSSI
Trigger: GATTGAAGAGTTTGACGGCCTCGAAGCTCTACGATTGGAGGGCAACACGGTGGGCGTGGAAGCGGCCAGAGTCATCGCCAAGGCCTTAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
ENSMUST00000230726.2
CDS CAA 90 bp CAGTTGTTAAGCTTGAGTTCCTGTAGGGTGAAGCAGGCTGGGCTCTaGAGGAGGGCCTCGAAGCCTCGCACTCCATCGGGTCCAAATGCG +
Preference number: 6 (lower is better)
Translates to: QLLSLSSCRVKQAGL*RRASKPRTPSGPNA
Trigger: CGCATTTGGACCCGATGGAGTGCGAGGCTTCGAGGCCCTCCTCAAGAGCCCAGCCTGCTTCACCCTACAGGAACTCAAGCTTAACAACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS CAA 90 bp GCCATGGCCACCCCACCCTTCTCAGTGAAGGTGTTGTCATTTAGGTaGATGACTCGCAACAGGGGGTTGATGGCAAAGGCCTGGGCCAGG +
Preference number: 6 (lower is better)
Translates to: AMATPPFSVKVLSFR*MTRNRGLMAKAWAR
Trigger: CCTGGCCCAGGCCTTTGCCATCAACCCCCTGTTGCGAGTCATCAACCTAAATGACAACACCTTCACTGAGAAGGGTGGGGTGGCCATGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS CAA 90 bp GATTGTGGCGGGCAAAGGAGCAGGTTTCCAGCGCGCCATTGGGCTTaGTCACAAATGCCAAGAGCAGGGGTGCAAGGGCCTTGGGGAAAT +
Preference number: 6 (lower is better)
Translates to: DCGGQRSRFPARHWA*SQMPRAGVQGPWGN
Trigger: ATTTCCCCAAGGCCCTTGCACCCCTGCTCTTGGCATTTGTGACAAAGCCCAATGGCGCGCTGGAAACCTGCTCCTTTGCCCGCCACAATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CCA 72 bp TGTGGCGGGCAAAGGAGCAGGTTTCCAGCGCGCCATTaGGCTTTGTCACAAATGCCAAGAGCAGGGGTGCAA +
Preference number: 6 (lower is better)
Translates to: CGGQRSRFPARH*ALSQMPRAGVQ
Trigger: TTGCACCCCTGCTCTTGGCATTTGTGACAAAGCCCAATGGCGCGCTGGAAACCTGCTCCTTTGCCCGCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 72 bp TTGTGGCGGGCAAAGGAGCAGGTTTCCAGCGCGCCATaGGGCTTTGTCACAAATGCCAAGAGCAGGGGTGCA +
Preference number: 6 (lower is better)
Translates to: LWRAKEQVSSAP*GFVTNAKSRGA
Trigger: TGCACCCCTGCTCTTGGCATTTGTGACAAAGCCCAATGGCGCGCTGGAAACCTGCTCCTTTGCCCGCCACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 90 bp GCATCTCTCTTGATTTCGCAGAACGACAGATTCAGCTCCTTTAGCTaGGGCAGGCCACCACGGACAGCATCTGCGATGGCAACGGCACCC +
Preference number: 6 (lower is better)
Translates to: ASLLISQNDRFSSFS*GRPPRTASAMATAP
Trigger: GGGTGCCGTTGCCATCGCAGATGCTGTCCGTGGTGGCCTGCCCAAGCTAAAGGAGCTGAATCTGTCGTTCTGCGAAATCAAGAGAGATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS TCA 72 bp GAGGGCATCGATGGCATCCAGCACTGCGGTCTTTACTaGGGCGTCATCCCTGAACACAGATGCCACCTTCAG +
Preference number: 6 (lower is better)
Translates to: EGIDGIQHCGLY*GVIPEHRCHLQ
Trigger: CTGAAGGTGGCATCTGTGTTCAGGGATGACGCCTCAGTAAAGACCGCAGTGCTGGATGCCATCGATGCCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS GCA 72 bp TGCCTCACCACGTGGTTCAACACCATCAGGGGGCCATaGAGGCTGGGTATGGCCTTGATCTTGTCTTCACTC +
Preference number: 6 (lower is better)
Translates to: CLTTWFNTIRGP*RLGMALILSSL
Trigger: GAGTGAAGACAAGATCAAGGCCATACCCAGCCTGCATGGCCCCCTGATGGTGTTGAACCACGTGGTGAGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS GCA 72 bp GCAGGTTTCCAGCGCGCCATTGGGCTTTGTCACAAATaGCAAGAGCAGGGGTGCAAGGGCCTTGGGGAAATA +
Preference number: 6 (lower is better)
Translates to: AGFQRAIGLCHK*QEQGCKGLGEI
Trigger: TATTTCCCCAAGGCCCTTGCACCCCTGCTCTTGGCATTTGTGACAAAGCCCAATGGCGCGCTGGAAACCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CCA 72 bp TTGATGACTCGCAACAGGGGGTTGATGGCAAAGGCCTaGGCCAGGGCTGTGACACCAGGATGGTTAATTCCG +
Preference number: 6 (lower is better)
Translates to: LMTRNRGLMAKA*ARAVTPGWLIP
Trigger: CGGAATTAACCATCCTGGTGTCACAGCCCTGGCCCAGGCCTTTGCCATCAACCCCCTGTTGCGAGTCATCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS CAA 72 bp TTGCCACCCCCGATGCCCATGCCACAGTTGTTAAGCTaGAGTTCCTGTAGGGTGAAGCAGGCTGGGCTCTTG +
Preference number: 6 (lower is better)
Translates to: LPPPMPMPQLLS*SSCRVKQAGLL
Trigger: CAAGAGCCCAGCCTGCTTCACCCTACAGGAACTCAAGCTTAACAACTGTGGCATGGGCATCGGGGGTGGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS CAA 90 bp GCCTTGTCGGCCACAGCCTCAGCAACAACCAGGGCAGCATCTCTCTaGATTTCGCAGAACGACAGATTCAGCTCCTTTAGCTTGGGCAGG +
Preference number: 6 (lower is better)
Translates to: ALSATASATTRAASL*ISQNDRFSSFSLGR
Trigger: CCTGCCCAAGCTAAAGGAGCTGAATCTGTCGTTCTGCGAAATCAAGAGAGATGCTGCCCTGGTTGTTGCTGAGGCTGTGGCCGACAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS TCA 72 bp CCCTTGCCCTTAAAACTCAGCTGCCCTCCGGCTACCTaGGTTTTAGCCAGGGTCTCTGCCAGTTTGGCAATG +
Preference number: 6 (lower is better)
Translates to: PLPLKLSCPPAT*VLARVSASLAM
Trigger: CATTGCCAAACTGGCAGAGACCCTGGCTAAAACTCAGGTAGCCGGAGGGCAGCTGAGTTTTAAGGGCAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
ENSMUST00000230726.2
CDS TCA 72 bp TCAGAGCTGGTGGGATCTCAGACCGAAGCCTTCCTGTaGACATGTCACTCCAGTGGCATCGCTTCAGCTCAG +
Preference number: 6 (lower is better)
Translates to: SELVGSQTEAFL*TCHSSGIASAQ
Trigger: CTGAGCTGAAGCGATGCCACTGGAGTGACATGTTCACAGGAAGGCTTCGGTCTGAGATCCCACCAGCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
ENSMUST00000230726.2
CDS GCA 72 bp TTCCAGAGTCCCGATGATCCCAAAAGCTTCTGCCAGTaGAGTGGCTCCGTCATTCTCCAGGCGATTTCTGCC +
Preference number: 6 (lower is better)
Translates to: FQSPDDPKSFCQ*SGSVILQAISA
Trigger: GGCAGAAATCGCCTGGAGAATGACGGAGCCACTGCACTGGCAGAAGCTTTTGGGATCATCGGGACTCTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS GCA 72 bp CACCTCTTCCAGAGTCCCGATGATCCCAAAAGCTTCTaGCAGTGCAGTGGCTCCGTCATTCTCCAGGCGATT +
Preference number: 6 (lower is better)
Translates to: HLFQSPDDPKSF*QCSGSVILQAI
Trigger: AATCGCCTGGAGAATGACGGAGCCACTGCACTGGCAGAAGCTTTTGGGATCATCGGGACTCTGGAAGAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS GCA 72 bp GCTGAAACAACCTTCTCTGGGTCGGAGGTATCAGTCTaGTGGACTATCAGCACCGAGACCTTGGGACCCAGA +
Preference number: 6 (lower is better)
Translates to: AETTFSGSEVSV*WTISTETLGPR
Trigger: TCTGGGTCCCAAGGTCTCGGTGCTGATAGTCCAGCAGACTGATACCTCCGACCCAGAGAAGGTTGTTTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CCA 72 bp ATGGCAAAGGCCTGGGCCAGGGCTGTGACACCAGGATaGTTAATTCCGTTCTGTGGCATATGCACCTCTTCC +
Preference number: 6 (lower is better)
Translates to: MAKAWARAVTPG*LIPFCGICTSS
Trigger: GGAAGAGGTGCATATGCCACAGAACGGAATTAACCATCCTGGTGTCACAGCCCTGGCCCAGGCCTTTGCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS CAA 72 bp AACACCATCAGGGGGCCATGCAGGCTGGGTATGGCCTaGATCTTGTCTTCACTCTTGAGCAGACCCATGTGG +
Preference number: 6 (lower is better)
Translates to: NTIRGPCRLGMA*ILSSLLSRPMW
Trigger: CCACATGGGTCTGCTCAAGAGTGAAGACAAGATCAAGGCCATACCCAGCCTGCATGGCCCCCTGATGGTGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 90 bp ACCCTTAGAGCGCACCAGGCAGTCTCCAAAATTGATCACTTCCACTaGTCGCAGAGTCTTCAGAGTCTCAGCCATGGCCACCCCACCCTT +
Preference number: 6 (lower is better)
Translates to: TLRAHQAVSKIDHFH*SQSLQSLSHGHPTL
Trigger: AAGGGTGGGGTGGCCATGGCTGAGACTCTGAAGACTCTGCGACAAGTGGAAGTGATCAATTTTGGAGACTGCCTGGTGCGCTCTAAGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 90 bp GCGATGGCAACGGCACCCTTAGAGCGCACCAGGCAGTCTCCAAAATaGATCACTTCCACTTGTCGCAGAGTCTTCAGAGTCTCAGCCATG +
Preference number: 6 (lower is better)
Translates to: AMATAPLERTRQSPK*ITSTCRRVFRVSAM
Trigger: CATGGCTGAGACTCTGAAGACTCTGCGACAAGTGGAAGTGATCAATTTTGGAGACTGCCTGGTGCGCTCTAAGGGTGCCGTTGCCATCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CCA 72 bp TTGTCACAAATGCCAAGAGCAGGGGTGCAAGGGCCTTaGGGAAATAGTCCTGCCTCACCACGTGGTTCAACA +
Preference number: 6 (lower is better)
Translates to: LSQMPRAGVQGP*GNSPASPRGST
Trigger: TGTTGAACCACGTGGTGAGGCAGGACTATTTCCCCAAGGCCCTTGCACCCCTGCTCTTGGCATTTGTGACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 72 bp TCAGCCATGGCCACCCCACCCTTCTCAGTGAAGGTGTaGTCATTTAGGTTGATGACTCGCAACAGGGGGTTG +
Preference number: 6 (lower is better)
Translates to: SAMATPPFSVKV*SFRLMTRNRGL
Trigger: CAACCCCCTGTTGCGAGTCATCAACCTAAATGACAACACCTTCACTGAGAAGGGTGGGGTGGCCATGGCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 72 bp GCGCACCAGGCAGTCTCCAAAATTGATCACTTCCACTaGTCGCAGAGTCTTCAGAGTCTCAGCCATGGCCAC +
Preference number: 6 (lower is better)
Translates to: AHQAVSKIDHFH*SQSLQSLSHGH
Trigger: GTGGCCATGGCTGAGACTCTGAAGACTCTGCGACAAGTGGAAGTGATCAATTTTGGAGACTGCCTGGTGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS TCA 72 bp CATCCAGCACTGCGGTCTTTACTGAGGCGTCATCCCTaGACACAGATGCCACCTTCAGGAAGGCTGAAACAA +
Preference number: 6 (lower is better)
Translates to: HPALRSLLRRHP*TQMPPSGRLKQ
Trigger: TTGTTTCAGCCTTCCTGAAGGTGGCATCTGTGTTCAGGGATGACGCCTCAGTAAAGACCGCAGTGCTGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 72 bp ACCCCACCCTTCTCAGTGAAGGTGTTGTCATTTAGGTaGATGACTCGCAACAGGGGGTTGATGGCAAAGGCC +
Preference number: 6 (lower is better)
Translates to: TPPFSVKVLSFR*MTRNRGLMAKA
Trigger: GGCCTTTGCCATCAACCCCCTGTTGCGAGTCATCAACCTAAATGACAACACCTTCACTGAGAAGGGTGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2
CDS CAA 72 bp ACGGCACCCTTAGAGCGCACCAGGCAGTCTCCAAAATaGATCACTTCCACTTGTCGCAGAGTCTTCAGAGTC +
Preference number: 6 (lower is better)
Translates to: TAPLERTRQSPK*ITSTCRRVFRV
Trigger: GACTCTGAAGACTCTGCGACAAGTGGAAGTGATCAATTTTGGAGACTGCCTGGTGCGCTCTAAGGGTGCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 72 bp GCCACAGCCTCAGCAACAACCAGGGCAGCATCTCTCTaGATTTCGCAGAACGACAGATTCAGCTCCTTTAGC +
Preference number: 6 (lower is better)
Translates to: ATASATTRAASL*ISQNDRFSSFS
Trigger: GCTAAAGGAGCTGAATCTGTCGTTCTGCGAAATCAAGAGAGATGCTGCCCTGGTTGTTGCTGAGGCTGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 90 bp TTCAGAGTCTCAGCCATGGCCACCCCACCCTTCTCAGTGAAGGTGTaGTCATTTAGGTTGATGACTCGCAACAGGGGGTTGATGGCAAAG +
Preference number: 6 (lower is better)
Translates to: FRVSAMATPPFSVKV*SFRLMTRNRGLMAK
Trigger: CTTTGCCATCAACCCCCTGTTGCGAGTCATCAACCTAAATGACAACACCTTCACTGAGAAGGGTGGGGTGGCCATGGCTGAGACTCTGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS CAA 90 bp AGCAGACCCATGTGGATGAGCAGCCTGGTAAGGAAGGTGTTGGAATaGAAAGAGGAGCAGCTGAAGGCCTTCTTCATGAGGGCATCGATG +
Preference number: 6 (lower is better)
Translates to: SRPMWMSSLVRKVLE*KEEQLKAFFMRASM
Trigger: CATCGATGCCCTCATGAAGAAGGCCTTCAGCTGCTCCTCTTTCAATTCCAACACCTTCCTTACCAGGCTGCTCATCCACATGGGTCTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS TCA 72 bp CCACAGCCTCAGCAACAACCAGGGCAGCATCTCTCTTaGTTTCGCAGAACGACAGATTCAGCTCCTTTAGCT +
Preference number: 6 (lower is better)
Translates to: PQPQQQPGQHLS*FRRTTDSAPLA
Trigger: AGCTAAAGGAGCTGAATCTGTCGTTCTGCGAAATCAAGAGAGATGCTGCCCTGGTTGTTGCTGAGGCTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
CDS GCA 72 bp GTGACACCAGGATGGTTAATTCCGTTCTGTGGCATATaGACCTCTTCCAGAGTCCCGATGATCCCAAAAGCT +
Preference number: 6 (lower is better)
Translates to: VTPGWLIPFCGI*TSSRVPMIPKA
Trigger: AGCTTTTGGGATCATCGGGACTCTGGAAGAGGTGCATATGCCACAGAACGGAATTAACCATCCTGGTGTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000052374.13
ENSMUST00000170134.9
ENSMUST00000171115.3
ENSMUST00000230302.2